2026-05-01T01:29:08,983 Created temporary directory: /tmp/pip-ephem-wheel-cache-yy4bkjct 2026-05-01T01:29:08,985 Created temporary directory: /tmp/pip-build-tracker-007cnmow 2026-05-01T01:29:08,985 Initialized build tracking at /tmp/pip-build-tracker-007cnmow 2026-05-01T01:29:08,986 Created build tracker: /tmp/pip-build-tracker-007cnmow 2026-05-01T01:29:08,986 Entered build tracker: /tmp/pip-build-tracker-007cnmow 2026-05-01T01:29:08,987 Created temporary directory: /tmp/pip-wheel-jqknxj9s 2026-05-01T01:29:08,990 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-01T01:29:08,992 Created temporary directory: /tmp/pip-ephem-wheel-cache-_k6g_w5g 2026-05-01T01:29:09,017 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-01T01:29:09,020 2 location(s) to search for versions of fibsem: 2026-05-01T01:29:09,020 * https://pypi.org/simple/fibsem/ 2026-05-01T01:29:09,020 * https://www.piwheels.org/simple/fibsem/ 2026-05-01T01:29:09,021 Fetching project page and analyzing links: https://pypi.org/simple/fibsem/ 2026-05-01T01:29:09,022 Getting page https://pypi.org/simple/fibsem/ 2026-05-01T01:29:09,023 Found index url https://pypi.org/simple 2026-05-01T01:29:09,250 Fetched page https://pypi.org/simple/fibsem/ as application/vnd.pypi.simple.v1+json 2026-05-01T01:29:09,260 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/4c/cf/0ed2a796e278cf9de3d52e287cc7d8d9892c21c0a00920a9ff30f5033a56/fibsem-0.2.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,261 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ad/73/b8cf8db0dba6e191be400b025e534b4f6d7d18c39d86428101720ee58e4e/fibsem-0.2.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,262 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d7/30/b93e42954d23659272a1b8ac6f3dd60da6eff0df55fc4d31bb515f6934eb/fibsem-0.2.2a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,262 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/c8/8f/4bfbe20bfa2ca615b74ad68a1317c1b61df9a93f5f8c9df9e223c9b20623/fibsem-0.2.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,263 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/7c/63/681df259de02d04424d8e71530649f0949504d5b31aaf5086651b5804d0c/fibsem-0.2.3a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,263 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/36/98/67400e49fe61d7e9e58d04099a516c039d4493a9ce346276a2cb37774dcd/fibsem-0.2.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,264 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/39/cc/5b8579067af3dc74509ceaba38d5117cde72f44a85ca8bcc56f5ebee7260/fibsem-0.2.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,265 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/43/13/625dba2d4741c02a3e6c970399a725b644b9a058dadb2f5fea9e9420b4e3/fibsem-0.2.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,265 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/87/1d/1562b356490f6c485f927c52d4b36e774bd5b9588d7a8da4a3dc9432db01/fibsem-0.3.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,266 Found link https://files.pythonhosted.org/packages/ad/3e/400c07e0574bbab09f711951db2f6ad3f367a8feff8f6cbafa7af89fd67a/fibsem-0.3.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a0 2026-05-01T01:29:09,267 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/df/fb/4bad22a49352a49befdb7d1513163de5d8d1a4cfb0e60fa3ac4c67f20482/fibsem-0.3.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,268 Found link https://files.pythonhosted.org/packages/4e/58/d870caa49f7754b016226db2b7f0ec101164622fc2e82511e7bae7f95af6/fibsem-0.3.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a1 2026-05-01T01:29:09,269 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/05/51/0a0cc14778c2ae7f68a601aa26821327fc35e08bc81546ba6e3d10bc704f/fibsem-0.3.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,270 Found link https://files.pythonhosted.org/packages/fc/2b/fea39a412194d35634c6d7f2e0768021aa0f024b880a17251a3f377e1c5c/fibsem-0.3.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0 2026-05-01T01:29:09,270 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/32/8b/d53be8a146bfa866e850b13e6b80977d4c1bc527852fc4d0c0cfe0b6fc56/fibsem-0.3.1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,271 Found link https://files.pythonhosted.org/packages/52/84/03322d031fa283e8c468f6e706d59b3efe59dbb4e2341ffa012c5f68c127/fibsem-0.3.1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.1 2026-05-01T01:29:09,272 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/07/65/22b4f873c57c647b123c552214de8f533f12706e6ff2b419f08b02c6f421/fibsem-0.3.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,273 Found link https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2a1 2026-05-01T01:29:09,273 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/f1/9d/ddd526104faf19ad44ad941b136dc14a30e289abdfdffba15bc11d34580d/fibsem-0.3.2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,274 Found link https://files.pythonhosted.org/packages/ef/10/13c01c548f92955d5069ea9caebdd1023f876a338bc336ac42356f609ee3/fibsem-0.3.2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2 2026-05-01T01:29:09,275 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/11/d6/ca062c93720e61354700869b036fbf65a1c66d5ce32d7d6c4bc341aacc1b/fibsem-0.3.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,276 Found link https://files.pythonhosted.org/packages/4e/ae/8048dff3e2eeb2c922176c5c412f1aed2346897e814bb76d175a9c1cd82e/fibsem-0.3.3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.3 2026-05-01T01:29:09,277 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/21/59/9dd2fd247baf0dcb2eed618b0f769f5bc1536091bc1496b73c0938f40c46/fibsem-0.3.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,278 Found link https://files.pythonhosted.org/packages/9f/62/1216f24d3f73e3d59fdd03335ac32354d65b09adf33df98bbe0e5557435c/fibsem-0.3.4.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.4 2026-05-01T01:29:09,278 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/33/da/3b0edd81d35e70a37a7c6971bc14cf6f1319bbb2f6134a154a8b28438ae7/fibsem-0.3.5a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,279 Found link https://files.pythonhosted.org/packages/3d/9c/ab22b6240afebb565dc876215d16bc04f542f0ff2e613c67b4672f9204c2/fibsem-0.3.5a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5a0 2026-05-01T01:29:09,280 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/0f/a4/5e57da3c16013f96e4561ad7e626c80effe866291c940fec4e5fbae41422/fibsem-0.3.5a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,281 Found link https://files.pythonhosted.org/packages/f9/e9/9befd7e3843a21457f35f510c64de8e6838290535a98a395fa6e5908bf02/fibsem-0.3.5a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5a1 2026-05-01T01:29:09,282 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/75/eb/25cdfe7f1f81b41f7fbbd9cf96b56a98d7f4742591e5c3a8fb339a069a7d/fibsem-0.3.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,282 Found link https://files.pythonhosted.org/packages/8a/7e/10d7149bc1716834fedc742963e72fcc96bd285123f16709977bcb2684e9/fibsem-0.3.5.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5 2026-05-01T01:29:09,283 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ae/f8/9c2df761ed582f1c2c92c7c46b6ee4aa2a8f1619d6e401de8385fc6e00e9/fibsem-0.4.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,284 Found link https://files.pythonhosted.org/packages/64/12/714c2603b3b3b4ebcfac53ade0c2ed0d224ab2a8bd917afd9fe00d5413d5/fibsem-0.4.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0a0 2026-05-01T01:29:09,284 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/95/33/9eefd81e39af42a7532203895ed23f99a09f414d85b6e9284aa476b102bc/fibsem-0.4.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,285 Found link https://files.pythonhosted.org/packages/1e/5e/26a692b01fbe9c5364137c3148600c9e2233781c9a0e34c8bfe1da84893d/fibsem-0.4.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0a1 2026-05-01T01:29:09,286 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ec/ff/909e849d3be278770eb1508a10e2f939921f5ab95efa8c89a151c4521fa2/fibsem-0.4.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,287 Found link https://files.pythonhosted.org/packages/89/99/54e5d7dcca80171de48c15cffa723ebf5faf35d9200751a7b14f034219c9/fibsem-0.4.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0 2026-05-01T01:29:09,288 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/b7/54/92008c36160b8efa013e845b339c19a50667ab80d8cd211a0b0136e4a378/fibsem-0.4.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,289 Found link https://files.pythonhosted.org/packages/09/b9/b86de8ca0eac74efc8b1e2377d831c85ab8d262ad6adf5bdb8bf88d709ea/fibsem-0.4.1a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a0 2026-05-01T01:29:09,290 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/b0/20/91878a10a278dbf43d56e655b3713730fd3a0a6335ced331bd4af4fc874e/fibsem-0.4.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,290 Found link https://files.pythonhosted.org/packages/e5/17/b068e52e2c71cdc8828a5f0f31a356c0b7e09cb265efc2ffa08b2ab70ec9/fibsem-0.4.1a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a1 2026-05-01T01:29:09,291 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/eb/f7/bc7aef2af42dbf3f5648ddd9c4c7930481ede0645e443a87d87e23dc3f08/fibsem-0.4.1a2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,292 Found link https://files.pythonhosted.org/packages/9e/83/be802fe2f6e6fb705ebac5145db3d3a939d1b5e1327cb5bb8ad45c5f4305/fibsem-0.4.1a2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a2 2026-05-01T01:29:09,293 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/15/82/c99977c3335d171af14c03d2f53a4a1bd048224ed87c01f80bc24340b105/fibsem-0.4.1a3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,294 Found link https://files.pythonhosted.org/packages/f9/e9/54e857b1e5bb2b435024c52d8abb0b427ef158d26586e52a86f434714e0c/fibsem-0.4.1a3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a3 2026-05-01T01:29:09,294 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d0/9c/60e16a3d93af71b12812af969a172d1b9d369b960f60943f10ece0a2d167/fibsem-0.4.1a4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,295 Found link https://files.pythonhosted.org/packages/19/7c/6056a88900926891a94bffde93b3a015c9c4dc5dfa9befff3f3933894309/fibsem-0.4.1a4.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a4 2026-05-01T01:29:09,296 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/cd/02/ca02f2a1e3bac94c02272882d51d877790d68389669e5d1c60307b88f496/fibsem-0.5.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,296 Found link https://files.pythonhosted.org/packages/f6/6b/60043dfe9472157e09ffa3670331b8abeb3bd75dc02a8099505558e5e93f/fibsem-0.5.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.0a0 2026-05-01T01:29:09,297 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/22/f7/5f10026a07d6a57a0076edd43b8cb2aa6c99ca7627d73d4148a79b4ce0b7/fibsem-0.5.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,298 Found link https://files.pythonhosted.org/packages/66/de/006e53849fac7a6e5d6668db30c6cd33d4422d4a5249fbe74b30d1fe7c19/fibsem-0.5.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.0 2026-05-01T01:29:09,299 Fetching project page and analyzing links: https://www.piwheels.org/simple/fibsem/ 2026-05-01T01:29:09,300 Getting page https://www.piwheels.org/simple/fibsem/ 2026-05-01T01:29:09,301 Found index url https://www.piwheels.org/simple 2026-05-01T01:29:09,473 Fetched page https://www.piwheels.org/simple/fibsem/ as text/html 2026-05-01T01:29:09,480 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a4-py3-none-any.whl#sha256=2f04e69d16c03c706c43703b5ce41458efa13fe47eaa337b74e0d806509d3612 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,480 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a3-py3-none-any.whl#sha256=620cc24270b7a249a18139807818849e86a947f852c570645bc9f2c3b71db009 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,481 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a2-py3-none-any.whl#sha256=5557b81b8968a7f877b11c83853ed170098f2ee12566d77d98858c338aafc987 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,482 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a1-py3-none-any.whl#sha256=434323dc920982d3a11a05f9a371b789c651c079f5b3f52b4e0f9767e023a66d (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,482 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a0-py3-none-any.whl#sha256=8cdf5947bf8ac28f8c66c56b535af7e4642d6ef9e668f3d3b7c2152ded7de2a9 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,483 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0-py3-none-any.whl#sha256=d51667917771fa9625169eb96dbaca2b235a8ab7dc5f1ad678102966817c27b7 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,484 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0a1-py3-none-any.whl#sha256=35162b65a87e942fdae287f95d40ff34365a9fc9e91bce94cc45ebc8282649f4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,484 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0a0-py3-none-any.whl#sha256=ca3bfce078100cd46e8df58808fc5047703e27d0a7caee586a6752762440536f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,485 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5-py3-none-any.whl#sha256=f8cb477984f69afce9e1c14235d4b8e40a1f277935b6f52ef50c0eca324cd39e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,485 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5a1-py3-none-any.whl#sha256=77b52127685127a616d9707a30d4cb10f49b742d812f27d3e89e5c56bfdce097 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,486 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5a0-py3-none-any.whl#sha256=d78b21af3febbdf8bf524f0bc121a306f875d0db18bac01bcca54e4e9a1e51e2 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:29:09,486 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.4-py3-none-any.whl#sha256=935ab1545a500df6e9fec6103fc7f2bbcd2709303844c87d666bb1d16193beab (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,487 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.3-py3-none-any.whl#sha256=a7b254be73ea431bbe9eba8b7fd7b425ad830568cfbf5ec0b574b350178d2e76 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,487 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.2-py3-none-any.whl#sha256=8dad9ff09be4720143e8d4a3866d6b17ed08c732b68f47dd110d400bfe2be28e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,488 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.2a1-py3-none-any.whl#sha256=f5309995df9eadda9e861edc7dd4d07452210426b10d4c4da4c2b405eb8e2ac4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,489 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.1-py3-none-any.whl#sha256=72ca906da40a31401ad7636438566ad77e6d6ef434c85d4517c7411645c41027 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,489 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0-py3-none-any.whl#sha256=61d366cbae13eecb465c904050eba503bb875f93c6e743eedcfae3ca9cf5e2ac (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,490 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0a1-py3-none-any.whl#sha256=21ae6ee6be3ad2f8832a6d457a20aea2627a25340a672d8a42f9f0488d8a710c (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,490 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0a0-py3-none-any.whl#sha256=4e29ec9054961edc9242d2cb332c01000bcb0574069ad23261e41ac7f1489a4f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:29:09,491 Skipping link: not a file: https://www.piwheels.org/simple/fibsem/ 2026-05-01T01:29:09,492 Skipping link: not a file: https://pypi.org/simple/fibsem/ 2026-05-01T01:29:09,515 Given no hashes to check 1 links for project 'fibsem': discarding no candidates 2026-05-01T01:29:09,535 Collecting fibsem==0.5.0a0 2026-05-01T01:29:09,537 Created temporary directory: /tmp/pip-unpack-xvyy1_ar 2026-05-01T01:29:09,778 Downloading fibsem-0.5.0a0.tar.gz (10.4 MB) 2026-05-01T01:29:12,428 Added fibsem==0.5.0a0 from https://files.pythonhosted.org/packages/f6/6b/60043dfe9472157e09ffa3670331b8abeb3bd75dc02a8099505558e5e93f/fibsem-0.5.0a0.tar.gz to build tracker '/tmp/pip-build-tracker-007cnmow' 2026-05-01T01:29:12,436 Created temporary directory: /tmp/pip-build-env-9rkx946_ 2026-05-01T01:29:12,440 Installing build dependencies: started 2026-05-01T01:29:12,441 Running command pip subprocess to install build dependencies 2026-05-01T01:29:13,623 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-01T01:29:14,062 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-01T01:29:14,085 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-01T01:29:15,909 Collecting setuptools>=45 2026-05-01T01:29:16,013 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-01T01:29:16,283 Collecting wheel 2026-05-01T01:29:16,312 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-01T01:29:16,655 Collecting setuptools_scm[toml]>=6.2 2026-05-01T01:29:16,670 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-01T01:29:16,855 Collecting packaging>=24.0 2026-05-01T01:29:16,910 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-01T01:29:16,996 Collecting vcs-versioning>=1.0.0.dev0 2026-05-01T01:29:17,013 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-01T01:29:20,072 Installing collected packages: setuptools, packaging, wheel, vcs-versioning, setuptools_scm 2026-05-01T01:29:23,461 Creating /tmp/pip-build-env-9rkx946_/overlay/local/bin 2026-05-01T01:29:23,463 changing mode of /tmp/pip-build-env-9rkx946_/overlay/local/bin/wheel to 755 2026-05-01T01:29:23,762 changing mode of /tmp/pip-build-env-9rkx946_/overlay/local/bin/vcs-versioning to 755 2026-05-01T01:29:23,869 changing mode of /tmp/pip-build-env-9rkx946_/overlay/local/bin/setuptools-scm to 755 2026-05-01T01:29:23,904 Successfully installed packaging-26.2 setuptools-82.0.1 setuptools_scm-10.0.5 vcs-versioning-1.1.1 wheel-0.47.0 2026-05-01T01:29:24,199 Installing build dependencies: finished with status 'done' 2026-05-01T01:29:24,205 Getting requirements to build wheel: started 2026-05-01T01:29:24,207 Running command Getting requirements to build wheel 2026-05-01T01:29:24,839 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-05-01T01:29:24,879 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-01T01:29:24,879 !! 2026-05-01T01:29:24,881 ******************************************************************************** 2026-05-01T01:29:24,881 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-01T01:29:24,883 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-01T01:29:24,883 or your builds will no longer be supported. 2026-05-01T01:29:24,884 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:29:24,885 ******************************************************************************** 2026-05-01T01:29:24,886 !! 2026-05-01T01:29:24,886 corresp(dist, value, root_dir) 2026-05-01T01:29:24,955 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:29:24,956 !! 2026-05-01T01:29:24,957 ******************************************************************************** 2026-05-01T01:29:24,957 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:29:24,958 License :: OSI Approved :: MIT License 2026-05-01T01:29:24,959 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:29:24,960 ******************************************************************************** 2026-05-01T01:29:24,960 !! 2026-05-01T01:29:24,961 dist._finalize_license_expression() 2026-05-01T01:29:24,963 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:29:24,963 !! 2026-05-01T01:29:24,965 ******************************************************************************** 2026-05-01T01:29:24,965 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:29:24,967 License :: OSI Approved :: MIT License 2026-05-01T01:29:24,968 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:29:24,968 ******************************************************************************** 2026-05-01T01:29:24,970 !! 2026-05-01T01:29:24,970 self._finalize_license_expression() 2026-05-01T01:29:24,972 running egg_info 2026-05-01T01:29:24,980 writing fibsem.egg-info/PKG-INFO 2026-05-01T01:29:24,989 writing dependency_links to fibsem.egg-info/dependency_links.txt 2026-05-01T01:29:24,991 writing entry points to fibsem.egg-info/entry_points.txt 2026-05-01T01:29:24,997 writing requirements to fibsem.egg-info/requires.txt 2026-05-01T01:29:24,998 writing top-level names to fibsem.egg-info/top_level.txt 2026-05-01T01:29:25,036 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-01T01:29:25,036 return get_active_overrides().subprocess_timeout 2026-05-01T01:29:25,043 listing git files failed - pretending there aren't any 2026-05-01T01:29:25,052 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2026-05-01T01:29:25,121 reading manifest template 'MANIFEST.in' 2026-05-01T01:29:25,123 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-05-01T01:29:25,125 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-05-01T01:29:25,126 warning: no previously-included files matching '*.ui' found under directory '*' 2026-05-01T01:29:25,127 adding license file 'LICENSE' 2026-05-01T01:29:25,141 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2026-05-01T01:29:25,247 Getting requirements to build wheel: finished with status 'done' 2026-05-01T01:29:25,250 Created temporary directory: /tmp/pip-modern-metadata-niwybb7o 2026-05-01T01:29:25,252 Preparing metadata (pyproject.toml): started 2026-05-01T01:29:25,253 Running command Preparing metadata (pyproject.toml) 2026-05-01T01:29:25,843 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-05-01T01:29:25,881 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-01T01:29:25,882 !! 2026-05-01T01:29:25,883 ******************************************************************************** 2026-05-01T01:29:25,883 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-01T01:29:25,884 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-01T01:29:25,884 or your builds will no longer be supported. 2026-05-01T01:29:25,885 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:29:25,886 ******************************************************************************** 2026-05-01T01:29:25,887 !! 2026-05-01T01:29:25,887 corresp(dist, value, root_dir) 2026-05-01T01:29:25,954 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:29:25,954 !! 2026-05-01T01:29:25,956 ******************************************************************************** 2026-05-01T01:29:25,956 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:29:25,957 License :: OSI Approved :: MIT License 2026-05-01T01:29:25,958 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:29:25,959 ******************************************************************************** 2026-05-01T01:29:25,960 !! 2026-05-01T01:29:25,961 dist._finalize_license_expression() 2026-05-01T01:29:25,962 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:29:25,962 !! 2026-05-01T01:29:25,964 ******************************************************************************** 2026-05-01T01:29:25,964 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:29:25,965 License :: OSI Approved :: MIT License 2026-05-01T01:29:25,966 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:29:25,967 ******************************************************************************** 2026-05-01T01:29:25,968 !! 2026-05-01T01:29:25,969 self._finalize_license_expression() 2026-05-01T01:29:25,970 running dist_info 2026-05-01T01:29:25,983 creating /tmp/pip-modern-metadata-niwybb7o/fibsem.egg-info 2026-05-01T01:29:25,984 writing /tmp/pip-modern-metadata-niwybb7o/fibsem.egg-info/PKG-INFO 2026-05-01T01:29:25,993 writing dependency_links to /tmp/pip-modern-metadata-niwybb7o/fibsem.egg-info/dependency_links.txt 2026-05-01T01:29:25,995 writing entry points to /tmp/pip-modern-metadata-niwybb7o/fibsem.egg-info/entry_points.txt 2026-05-01T01:29:26,001 writing requirements to /tmp/pip-modern-metadata-niwybb7o/fibsem.egg-info/requires.txt 2026-05-01T01:29:26,002 writing top-level names to /tmp/pip-modern-metadata-niwybb7o/fibsem.egg-info/top_level.txt 2026-05-01T01:29:26,004 writing manifest file '/tmp/pip-modern-metadata-niwybb7o/fibsem.egg-info/SOURCES.txt' 2026-05-01T01:29:26,037 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-01T01:29:26,037 return get_active_overrides().subprocess_timeout 2026-05-01T01:29:26,043 listing git files failed - pretending there aren't any 2026-05-01T01:29:26,051 reading manifest file '/tmp/pip-modern-metadata-niwybb7o/fibsem.egg-info/SOURCES.txt' 2026-05-01T01:29:26,052 reading manifest template 'MANIFEST.in' 2026-05-01T01:29:26,054 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-05-01T01:29:26,054 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-05-01T01:29:26,055 warning: no previously-included files matching '*.ui' found under directory '*' 2026-05-01T01:29:26,056 adding license file 'LICENSE' 2026-05-01T01:29:26,059 writing manifest file '/tmp/pip-modern-metadata-niwybb7o/fibsem.egg-info/SOURCES.txt' 2026-05-01T01:29:26,060 creating '/tmp/pip-modern-metadata-niwybb7o/fibsem-0.5.0a0.dist-info' 2026-05-01T01:29:26,191 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-01T01:29:26,196 Source in /tmp/pip-wheel-jqknxj9s/fibsem_373d12724db746ffb2c2a7ad7e6dc9a5 has version 0.5.0a0, which satisfies requirement fibsem==0.5.0a0 from https://files.pythonhosted.org/packages/f6/6b/60043dfe9472157e09ffa3670331b8abeb3bd75dc02a8099505558e5e93f/fibsem-0.5.0a0.tar.gz 2026-05-01T01:29:26,197 Removed fibsem==0.5.0a0 from https://files.pythonhosted.org/packages/f6/6b/60043dfe9472157e09ffa3670331b8abeb3bd75dc02a8099505558e5e93f/fibsem-0.5.0a0.tar.gz from build tracker '/tmp/pip-build-tracker-007cnmow' 2026-05-01T01:29:26,204 Created temporary directory: /tmp/pip-unpack-z_wxjlwd 2026-05-01T01:29:26,204 Building wheels for collected packages: fibsem 2026-05-01T01:29:26,209 Created temporary directory: /tmp/pip-wheel-it1onyzx 2026-05-01T01:29:26,209 Destination directory: /tmp/pip-wheel-it1onyzx 2026-05-01T01:29:26,211 Building wheel for fibsem (pyproject.toml): started 2026-05-01T01:29:26,212 Running command Building wheel for fibsem (pyproject.toml) 2026-05-01T01:29:26,795 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-05-01T01:29:26,832 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-01T01:29:26,832 !! 2026-05-01T01:29:26,834 ******************************************************************************** 2026-05-01T01:29:26,834 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-01T01:29:26,835 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-01T01:29:26,836 or your builds will no longer be supported. 2026-05-01T01:29:26,837 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:29:26,837 ******************************************************************************** 2026-05-01T01:29:26,838 !! 2026-05-01T01:29:26,839 corresp(dist, value, root_dir) 2026-05-01T01:29:26,905 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:29:26,906 !! 2026-05-01T01:29:26,907 ******************************************************************************** 2026-05-01T01:29:26,908 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:29:26,909 License :: OSI Approved :: MIT License 2026-05-01T01:29:26,910 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:29:26,910 ******************************************************************************** 2026-05-01T01:29:26,911 !! 2026-05-01T01:29:26,911 dist._finalize_license_expression() 2026-05-01T01:29:26,917 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:29:26,918 !! 2026-05-01T01:29:26,919 ******************************************************************************** 2026-05-01T01:29:26,919 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:29:26,920 License :: OSI Approved :: MIT License 2026-05-01T01:29:26,921 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:29:26,921 ******************************************************************************** 2026-05-01T01:29:26,922 !! 2026-05-01T01:29:26,923 self._finalize_license_expression() 2026-05-01T01:29:26,923 running bdist_wheel 2026-05-01T01:29:26,948 running build 2026-05-01T01:29:26,949 running build_py 2026-05-01T01:29:26,951 creating build/lib/fibsem 2026-05-01T01:29:26,954 copying fibsem/config.py -> build/lib/fibsem 2026-05-01T01:29:26,957 copying fibsem/constants.py -> build/lib/fibsem 2026-05-01T01:29:26,960 copying fibsem/transformations.py -> build/lib/fibsem 2026-05-01T01:29:26,962 copying fibsem/movement.py -> build/lib/fibsem 2026-05-01T01:29:26,964 copying fibsem/microscope.py -> build/lib/fibsem 2026-05-01T01:29:26,970 copying fibsem/__init__.py -> build/lib/fibsem 2026-05-01T01:29:26,972 copying fibsem/structures.py -> build/lib/fibsem 2026-05-01T01:29:26,976 copying fibsem/logo.py -> build/lib/fibsem 2026-05-01T01:29:26,979 copying fibsem/gis.py -> build/lib/fibsem 2026-05-01T01:29:26,981 copying fibsem/utils.py -> build/lib/fibsem 2026-05-01T01:29:26,984 copying fibsem/alignment.py -> build/lib/fibsem 2026-05-01T01:29:26,988 copying fibsem/configuration.py -> build/lib/fibsem 2026-05-01T01:29:26,990 copying fibsem/calibration.py -> build/lib/fibsem 2026-05-01T01:29:26,993 copying fibsem/validation.py -> build/lib/fibsem 2026-05-01T01:29:26,996 copying fibsem/conversions.py -> build/lib/fibsem 2026-05-01T01:29:26,998 copying fibsem/acquire.py -> build/lib/fibsem 2026-05-01T01:29:27,000 running egg_info 2026-05-01T01:29:27,014 writing fibsem.egg-info/PKG-INFO 2026-05-01T01:29:27,023 writing dependency_links to fibsem.egg-info/dependency_links.txt 2026-05-01T01:29:27,025 writing entry points to fibsem.egg-info/entry_points.txt 2026-05-01T01:29:27,031 writing requirements to fibsem.egg-info/requires.txt 2026-05-01T01:29:27,032 writing top-level names to fibsem.egg-info/top_level.txt 2026-05-01T01:29:27,060 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-01T01:29:27,061 return get_active_overrides().subprocess_timeout 2026-05-01T01:29:27,067 listing git files failed - pretending there aren't any 2026-05-01T01:29:27,075 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2026-05-01T01:29:27,097 reading manifest template 'MANIFEST.in' 2026-05-01T01:29:27,100 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-05-01T01:29:27,102 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-05-01T01:29:27,104 warning: no previously-included files matching '*.ui' found under directory '*' 2026-05-01T01:29:27,104 adding license file 'LICENSE' 2026-05-01T01:29:27,119 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2026-05-01T01:29:27,123 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications' is absent from the `packages` configuration. 2026-05-01T01:29:27,123 !! 2026-05-01T01:29:27,124 ******************************************************************************** 2026-05-01T01:29:27,125 ############################ 2026-05-01T01:29:27,125 # Package would be ignored # 2026-05-01T01:29:27,125 ############################ 2026-05-01T01:29:27,126 Python recognizes 'fibsem.applications' as an importable package[^1], 2026-05-01T01:29:27,126 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,127 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,127 package, please make sure that 'fibsem.applications' is explicitly added 2026-05-01T01:29:27,128 to the `packages` configuration field. 2026-05-01T01:29:27,129 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,129 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,130 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,131 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,133 If you don't want 'fibsem.applications' to be distributed and are 2026-05-01T01:29:27,133 already explicitly excluding 'fibsem.applications' via 2026-05-01T01:29:27,134 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,134 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,135 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,137 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,139 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,139 even if it does not contain any `.py` files. 2026-05-01T01:29:27,140 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,141 directory, all directories are treated like packages. 2026-05-01T01:29:27,141 ******************************************************************************** 2026-05-01T01:29:27,143 !! 2026-05-01T01:29:27,143 check.warn(importable) 2026-05-01T01:29:27,144 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella' is absent from the `packages` configuration. 2026-05-01T01:29:27,144 !! 2026-05-01T01:29:27,146 ******************************************************************************** 2026-05-01T01:29:27,146 ############################ 2026-05-01T01:29:27,147 # Package would be ignored # 2026-05-01T01:29:27,147 ############################ 2026-05-01T01:29:27,148 Python recognizes 'fibsem.applications.autolamella' as an importable package[^1], 2026-05-01T01:29:27,148 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,150 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,150 package, please make sure that 'fibsem.applications.autolamella' is explicitly added 2026-05-01T01:29:27,151 to the `packages` configuration field. 2026-05-01T01:29:27,152 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,153 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,154 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,155 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,156 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,156 If you don't want 'fibsem.applications.autolamella' to be distributed and are 2026-05-01T01:29:27,157 already explicitly excluding 'fibsem.applications.autolamella' via 2026-05-01T01:29:27,157 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,158 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,158 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,159 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,160 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,161 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,162 even if it does not contain any `.py` files. 2026-05-01T01:29:27,162 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,163 directory, all directories are treated like packages. 2026-05-01T01:29:27,163 ******************************************************************************** 2026-05-01T01:29:27,164 !! 2026-05-01T01:29:27,165 check.warn(importable) 2026-05-01T01:29:27,165 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.compat' is absent from the `packages` configuration. 2026-05-01T01:29:27,166 !! 2026-05-01T01:29:27,167 ******************************************************************************** 2026-05-01T01:29:27,167 ############################ 2026-05-01T01:29:27,168 # Package would be ignored # 2026-05-01T01:29:27,169 ############################ 2026-05-01T01:29:27,169 Python recognizes 'fibsem.applications.autolamella.compat' as an importable package[^1], 2026-05-01T01:29:27,170 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,170 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,171 package, please make sure that 'fibsem.applications.autolamella.compat' is explicitly added 2026-05-01T01:29:27,172 to the `packages` configuration field. 2026-05-01T01:29:27,173 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,173 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,174 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,175 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,176 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,176 If you don't want 'fibsem.applications.autolamella.compat' to be distributed and are 2026-05-01T01:29:27,177 already explicitly excluding 'fibsem.applications.autolamella.compat' via 2026-05-01T01:29:27,177 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,178 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,179 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,180 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,181 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,183 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,183 even if it does not contain any `.py` files. 2026-05-01T01:29:27,183 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,184 directory, all directories are treated like packages. 2026-05-01T01:29:27,184 ******************************************************************************** 2026-05-01T01:29:27,185 !! 2026-05-01T01:29:27,185 check.warn(importable) 2026-05-01T01:29:27,186 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.protocol' is absent from the `packages` configuration. 2026-05-01T01:29:27,186 !! 2026-05-01T01:29:27,187 ******************************************************************************** 2026-05-01T01:29:27,187 ############################ 2026-05-01T01:29:27,188 # Package would be ignored # 2026-05-01T01:29:27,188 ############################ 2026-05-01T01:29:27,189 Python recognizes 'fibsem.applications.autolamella.protocol' as an importable package[^1], 2026-05-01T01:29:27,189 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,190 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,190 package, please make sure that 'fibsem.applications.autolamella.protocol' is explicitly added 2026-05-01T01:29:27,191 to the `packages` configuration field. 2026-05-01T01:29:27,192 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,192 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,192 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,193 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,195 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,196 If you don't want 'fibsem.applications.autolamella.protocol' to be distributed and are 2026-05-01T01:29:27,196 already explicitly excluding 'fibsem.applications.autolamella.protocol' via 2026-05-01T01:29:27,197 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,197 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,198 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,199 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,200 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,201 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,202 even if it does not contain any `.py` files. 2026-05-01T01:29:27,202 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,203 directory, all directories are treated like packages. 2026-05-01T01:29:27,203 ******************************************************************************** 2026-05-01T01:29:27,204 !! 2026-05-01T01:29:27,205 check.warn(importable) 2026-05-01T01:29:27,205 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.protocol.legacy' is absent from the `packages` configuration. 2026-05-01T01:29:27,206 !! 2026-05-01T01:29:27,207 ******************************************************************************** 2026-05-01T01:29:27,207 ############################ 2026-05-01T01:29:27,208 # Package would be ignored # 2026-05-01T01:29:27,209 ############################ 2026-05-01T01:29:27,209 Python recognizes 'fibsem.applications.autolamella.protocol.legacy' as an importable package[^1], 2026-05-01T01:29:27,209 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,210 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,211 package, please make sure that 'fibsem.applications.autolamella.protocol.legacy' is explicitly added 2026-05-01T01:29:27,211 to the `packages` configuration field. 2026-05-01T01:29:27,212 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,212 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,212 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,213 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,214 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,215 If you don't want 'fibsem.applications.autolamella.protocol.legacy' to be distributed and are 2026-05-01T01:29:27,215 already explicitly excluding 'fibsem.applications.autolamella.protocol.legacy' via 2026-05-01T01:29:27,215 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,216 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,216 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,217 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,218 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,220 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,221 even if it does not contain any `.py` files. 2026-05-01T01:29:27,221 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,222 directory, all directories are treated like packages. 2026-05-01T01:29:27,222 ******************************************************************************** 2026-05-01T01:29:27,223 !! 2026-05-01T01:29:27,224 check.warn(importable) 2026-05-01T01:29:27,225 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.tools' is absent from the `packages` configuration. 2026-05-01T01:29:27,225 !! 2026-05-01T01:29:27,226 ******************************************************************************** 2026-05-01T01:29:27,227 ############################ 2026-05-01T01:29:27,227 # Package would be ignored # 2026-05-01T01:29:27,227 ############################ 2026-05-01T01:29:27,228 Python recognizes 'fibsem.applications.autolamella.tools' as an importable package[^1], 2026-05-01T01:29:27,228 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,229 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,230 package, please make sure that 'fibsem.applications.autolamella.tools' is explicitly added 2026-05-01T01:29:27,230 to the `packages` configuration field. 2026-05-01T01:29:27,231 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,232 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,232 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,233 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,234 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,236 If you don't want 'fibsem.applications.autolamella.tools' to be distributed and are 2026-05-01T01:29:27,236 already explicitly excluding 'fibsem.applications.autolamella.tools' via 2026-05-01T01:29:27,236 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,237 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,237 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,238 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,238 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,239 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,240 even if it does not contain any `.py` files. 2026-05-01T01:29:27,240 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,240 directory, all directories are treated like packages. 2026-05-01T01:29:27,241 ******************************************************************************** 2026-05-01T01:29:27,241 !! 2026-05-01T01:29:27,242 check.warn(importable) 2026-05-01T01:29:27,242 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.ui' is absent from the `packages` configuration. 2026-05-01T01:29:27,242 !! 2026-05-01T01:29:27,243 ******************************************************************************** 2026-05-01T01:29:27,244 ############################ 2026-05-01T01:29:27,244 # Package would be ignored # 2026-05-01T01:29:27,244 ############################ 2026-05-01T01:29:27,245 Python recognizes 'fibsem.applications.autolamella.ui' as an importable package[^1], 2026-05-01T01:29:27,245 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,246 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,247 package, please make sure that 'fibsem.applications.autolamella.ui' is explicitly added 2026-05-01T01:29:27,247 to the `packages` configuration field. 2026-05-01T01:29:27,248 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,249 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,249 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,250 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,251 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,252 If you don't want 'fibsem.applications.autolamella.ui' to be distributed and are 2026-05-01T01:29:27,253 already explicitly excluding 'fibsem.applications.autolamella.ui' via 2026-05-01T01:29:27,253 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,254 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,254 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,255 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,256 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,258 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,258 even if it does not contain any `.py` files. 2026-05-01T01:29:27,259 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,259 directory, all directories are treated like packages. 2026-05-01T01:29:27,260 ******************************************************************************** 2026-05-01T01:29:27,261 !! 2026-05-01T01:29:27,261 check.warn(importable) 2026-05-01T01:29:27,261 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.ui.tests' is absent from the `packages` configuration. 2026-05-01T01:29:27,262 !! 2026-05-01T01:29:27,262 ******************************************************************************** 2026-05-01T01:29:27,263 ############################ 2026-05-01T01:29:27,263 # Package would be ignored # 2026-05-01T01:29:27,264 ############################ 2026-05-01T01:29:27,264 Python recognizes 'fibsem.applications.autolamella.ui.tests' as an importable package[^1], 2026-05-01T01:29:27,264 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,265 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,265 package, please make sure that 'fibsem.applications.autolamella.ui.tests' is explicitly added 2026-05-01T01:29:27,266 to the `packages` configuration field. 2026-05-01T01:29:27,267 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,267 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,267 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,268 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,269 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,270 If you don't want 'fibsem.applications.autolamella.ui.tests' to be distributed and are 2026-05-01T01:29:27,270 already explicitly excluding 'fibsem.applications.autolamella.ui.tests' via 2026-05-01T01:29:27,271 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,272 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,272 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,273 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,275 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,276 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,277 even if it does not contain any `.py` files. 2026-05-01T01:29:27,277 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,278 directory, all directories are treated like packages. 2026-05-01T01:29:27,278 ******************************************************************************** 2026-05-01T01:29:27,279 !! 2026-05-01T01:29:27,280 check.warn(importable) 2026-05-01T01:29:27,280 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows' is absent from the `packages` configuration. 2026-05-01T01:29:27,281 !! 2026-05-01T01:29:27,282 ******************************************************************************** 2026-05-01T01:29:27,283 ############################ 2026-05-01T01:29:27,283 # Package would be ignored # 2026-05-01T01:29:27,284 ############################ 2026-05-01T01:29:27,284 Python recognizes 'fibsem.applications.autolamella.workflows' as an importable package[^1], 2026-05-01T01:29:27,285 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,286 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,286 package, please make sure that 'fibsem.applications.autolamella.workflows' is explicitly added 2026-05-01T01:29:27,287 to the `packages` configuration field. 2026-05-01T01:29:27,288 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,288 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,289 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,290 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,290 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,291 If you don't want 'fibsem.applications.autolamella.workflows' to be distributed and are 2026-05-01T01:29:27,292 already explicitly excluding 'fibsem.applications.autolamella.workflows' via 2026-05-01T01:29:27,292 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,293 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,293 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,294 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,295 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,296 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,296 even if it does not contain any `.py` files. 2026-05-01T01:29:27,297 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,297 directory, all directories are treated like packages. 2026-05-01T01:29:27,298 ******************************************************************************** 2026-05-01T01:29:27,298 !! 2026-05-01T01:29:27,299 check.warn(importable) 2026-05-01T01:29:27,299 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows.legacy' is absent from the `packages` configuration. 2026-05-01T01:29:27,300 !! 2026-05-01T01:29:27,300 ******************************************************************************** 2026-05-01T01:29:27,301 ############################ 2026-05-01T01:29:27,301 # Package would be ignored # 2026-05-01T01:29:27,302 ############################ 2026-05-01T01:29:27,302 Python recognizes 'fibsem.applications.autolamella.workflows.legacy' as an importable package[^1], 2026-05-01T01:29:27,303 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,303 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,304 package, please make sure that 'fibsem.applications.autolamella.workflows.legacy' is explicitly added 2026-05-01T01:29:27,304 to the `packages` configuration field. 2026-05-01T01:29:27,305 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,306 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,306 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,307 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,308 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,309 If you don't want 'fibsem.applications.autolamella.workflows.legacy' to be distributed and are 2026-05-01T01:29:27,309 already explicitly excluding 'fibsem.applications.autolamella.workflows.legacy' via 2026-05-01T01:29:27,310 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,310 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,311 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,312 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,313 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,314 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,314 even if it does not contain any `.py` files. 2026-05-01T01:29:27,314 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,315 directory, all directories are treated like packages. 2026-05-01T01:29:27,315 ******************************************************************************** 2026-05-01T01:29:27,316 !! 2026-05-01T01:29:27,316 check.warn(importable) 2026-05-01T01:29:27,317 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows.tasks' is absent from the `packages` configuration. 2026-05-01T01:29:27,317 !! 2026-05-01T01:29:27,318 ******************************************************************************** 2026-05-01T01:29:27,318 ############################ 2026-05-01T01:29:27,318 # Package would be ignored # 2026-05-01T01:29:27,319 ############################ 2026-05-01T01:29:27,319 Python recognizes 'fibsem.applications.autolamella.workflows.tasks' as an importable package[^1], 2026-05-01T01:29:27,320 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,321 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,321 package, please make sure that 'fibsem.applications.autolamella.workflows.tasks' is explicitly added 2026-05-01T01:29:27,321 to the `packages` configuration field. 2026-05-01T01:29:27,322 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,322 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,323 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,324 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,324 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,325 If you don't want 'fibsem.applications.autolamella.workflows.tasks' to be distributed and are 2026-05-01T01:29:27,326 already explicitly excluding 'fibsem.applications.autolamella.workflows.tasks' via 2026-05-01T01:29:27,326 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,326 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,327 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,328 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,329 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,330 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,330 even if it does not contain any `.py` files. 2026-05-01T01:29:27,331 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,331 directory, all directories are treated like packages. 2026-05-01T01:29:27,332 ******************************************************************************** 2026-05-01T01:29:27,333 !! 2026-05-01T01:29:27,333 check.warn(importable) 2026-05-01T01:29:27,334 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.chat' is absent from the `packages` configuration. 2026-05-01T01:29:27,334 !! 2026-05-01T01:29:27,335 ******************************************************************************** 2026-05-01T01:29:27,336 ############################ 2026-05-01T01:29:27,336 # Package would be ignored # 2026-05-01T01:29:27,336 ############################ 2026-05-01T01:29:27,337 Python recognizes 'fibsem.chat' as an importable package[^1], 2026-05-01T01:29:27,337 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,338 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,338 package, please make sure that 'fibsem.chat' is explicitly added 2026-05-01T01:29:27,338 to the `packages` configuration field. 2026-05-01T01:29:27,339 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,339 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,340 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,340 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,341 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,342 If you don't want 'fibsem.chat' to be distributed and are 2026-05-01T01:29:27,342 already explicitly excluding 'fibsem.chat' via 2026-05-01T01:29:27,342 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,343 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,343 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,344 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,345 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,346 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,347 even if it does not contain any `.py` files. 2026-05-01T01:29:27,347 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,348 directory, all directories are treated like packages. 2026-05-01T01:29:27,349 ******************************************************************************** 2026-05-01T01:29:27,350 !! 2026-05-01T01:29:27,350 check.warn(importable) 2026-05-01T01:29:27,351 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.config' is absent from the `packages` configuration. 2026-05-01T01:29:27,351 !! 2026-05-01T01:29:27,352 ******************************************************************************** 2026-05-01T01:29:27,353 ############################ 2026-05-01T01:29:27,353 # Package would be ignored # 2026-05-01T01:29:27,354 ############################ 2026-05-01T01:29:27,354 Python recognizes 'fibsem.config' as an importable package[^1], 2026-05-01T01:29:27,354 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,355 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,356 package, please make sure that 'fibsem.config' is explicitly added 2026-05-01T01:29:27,358 to the `packages` configuration field. 2026-05-01T01:29:27,359 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,359 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,360 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,361 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,362 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,363 If you don't want 'fibsem.config' to be distributed and are 2026-05-01T01:29:27,363 already explicitly excluding 'fibsem.config' via 2026-05-01T01:29:27,364 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,364 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,364 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,365 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,366 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,367 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,367 even if it does not contain any `.py` files. 2026-05-01T01:29:27,367 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,368 directory, all directories are treated like packages. 2026-05-01T01:29:27,368 ******************************************************************************** 2026-05-01T01:29:27,369 !! 2026-05-01T01:29:27,369 check.warn(importable) 2026-05-01T01:29:27,370 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation' is absent from the `packages` configuration. 2026-05-01T01:29:27,370 !! 2026-05-01T01:29:27,371 ******************************************************************************** 2026-05-01T01:29:27,371 ############################ 2026-05-01T01:29:27,372 # Package would be ignored # 2026-05-01T01:29:27,372 ############################ 2026-05-01T01:29:27,373 Python recognizes 'fibsem.correlation' as an importable package[^1], 2026-05-01T01:29:27,373 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,374 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,375 package, please make sure that 'fibsem.correlation' is explicitly added 2026-05-01T01:29:27,376 to the `packages` configuration field. 2026-05-01T01:29:27,377 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,378 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,379 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,380 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,380 If you don't want 'fibsem.correlation' to be distributed and are 2026-05-01T01:29:27,381 already explicitly excluding 'fibsem.correlation' via 2026-05-01T01:29:27,381 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,382 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,382 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,383 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,384 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,386 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,387 even if it does not contain any `.py` files. 2026-05-01T01:29:27,387 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,388 directory, all directories are treated like packages. 2026-05-01T01:29:27,388 ******************************************************************************** 2026-05-01T01:29:27,389 !! 2026-05-01T01:29:27,390 check.warn(importable) 2026-05-01T01:29:27,390 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.pyto' is absent from the `packages` configuration. 2026-05-01T01:29:27,390 !! 2026-05-01T01:29:27,391 ******************************************************************************** 2026-05-01T01:29:27,391 ############################ 2026-05-01T01:29:27,392 # Package would be ignored # 2026-05-01T01:29:27,392 ############################ 2026-05-01T01:29:27,392 Python recognizes 'fibsem.correlation.pyto' as an importable package[^1], 2026-05-01T01:29:27,392 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,393 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,394 package, please make sure that 'fibsem.correlation.pyto' is explicitly added 2026-05-01T01:29:27,394 to the `packages` configuration field. 2026-05-01T01:29:27,395 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,395 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,395 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,396 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,397 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,398 If you don't want 'fibsem.correlation.pyto' to be distributed and are 2026-05-01T01:29:27,398 already explicitly excluding 'fibsem.correlation.pyto' via 2026-05-01T01:29:27,399 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,399 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,400 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,401 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,402 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,404 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,404 even if it does not contain any `.py` files. 2026-05-01T01:29:27,405 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,405 directory, all directories are treated like packages. 2026-05-01T01:29:27,406 ******************************************************************************** 2026-05-01T01:29:27,407 !! 2026-05-01T01:29:27,407 check.warn(importable) 2026-05-01T01:29:27,408 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.pyto.test' is absent from the `packages` configuration. 2026-05-01T01:29:27,408 !! 2026-05-01T01:29:27,409 ******************************************************************************** 2026-05-01T01:29:27,410 ############################ 2026-05-01T01:29:27,410 # Package would be ignored # 2026-05-01T01:29:27,410 ############################ 2026-05-01T01:29:27,411 Python recognizes 'fibsem.correlation.pyto.test' as an importable package[^1], 2026-05-01T01:29:27,412 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,413 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,413 package, please make sure that 'fibsem.correlation.pyto.test' is explicitly added 2026-05-01T01:29:27,414 to the `packages` configuration field. 2026-05-01T01:29:27,415 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,415 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,415 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,416 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,417 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,417 If you don't want 'fibsem.correlation.pyto.test' to be distributed and are 2026-05-01T01:29:27,418 already explicitly excluding 'fibsem.correlation.pyto.test' via 2026-05-01T01:29:27,418 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,419 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,419 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,420 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,420 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,422 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,422 even if it does not contain any `.py` files. 2026-05-01T01:29:27,422 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,423 directory, all directories are treated like packages. 2026-05-01T01:29:27,423 ******************************************************************************** 2026-05-01T01:29:27,424 !! 2026-05-01T01:29:27,424 check.warn(importable) 2026-05-01T01:29:27,425 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.ui' is absent from the `packages` configuration. 2026-05-01T01:29:27,426 !! 2026-05-01T01:29:27,427 ******************************************************************************** 2026-05-01T01:29:27,427 ############################ 2026-05-01T01:29:27,428 # Package would be ignored # 2026-05-01T01:29:27,428 ############################ 2026-05-01T01:29:27,429 Python recognizes 'fibsem.correlation.ui' as an importable package[^1], 2026-05-01T01:29:27,430 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,431 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,432 package, please make sure that 'fibsem.correlation.ui' is explicitly added 2026-05-01T01:29:27,432 to the `packages` configuration field. 2026-05-01T01:29:27,433 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,434 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,434 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,435 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,436 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,437 If you don't want 'fibsem.correlation.ui' to be distributed and are 2026-05-01T01:29:27,438 already explicitly excluding 'fibsem.correlation.ui' via 2026-05-01T01:29:27,438 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,439 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,439 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,441 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,442 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,443 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,443 even if it does not contain any `.py` files. 2026-05-01T01:29:27,444 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,444 directory, all directories are treated like packages. 2026-05-01T01:29:27,445 ******************************************************************************** 2026-05-01T01:29:27,445 !! 2026-05-01T01:29:27,446 check.warn(importable) 2026-05-01T01:29:27,446 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.ui.qt' is absent from the `packages` configuration. 2026-05-01T01:29:27,447 !! 2026-05-01T01:29:27,447 ******************************************************************************** 2026-05-01T01:29:27,448 ############################ 2026-05-01T01:29:27,448 # Package would be ignored # 2026-05-01T01:29:27,449 ############################ 2026-05-01T01:29:27,449 Python recognizes 'fibsem.correlation.ui.qt' as an importable package[^1], 2026-05-01T01:29:27,449 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,450 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,451 package, please make sure that 'fibsem.correlation.ui.qt' is explicitly added 2026-05-01T01:29:27,451 to the `packages` configuration field. 2026-05-01T01:29:27,452 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,452 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,453 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,454 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,456 If you don't want 'fibsem.correlation.ui.qt' to be distributed and are 2026-05-01T01:29:27,456 already explicitly excluding 'fibsem.correlation.ui.qt' via 2026-05-01T01:29:27,457 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,457 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,458 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,459 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,460 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,462 even if it does not contain any `.py` files. 2026-05-01T01:29:27,462 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,463 directory, all directories are treated like packages. 2026-05-01T01:29:27,463 ******************************************************************************** 2026-05-01T01:29:27,464 !! 2026-05-01T01:29:27,464 check.warn(importable) 2026-05-01T01:29:27,465 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection' is absent from the `packages` configuration. 2026-05-01T01:29:27,465 !! 2026-05-01T01:29:27,467 ******************************************************************************** 2026-05-01T01:29:27,467 ############################ 2026-05-01T01:29:27,468 # Package would be ignored # 2026-05-01T01:29:27,468 ############################ 2026-05-01T01:29:27,469 Python recognizes 'fibsem.detection' as an importable package[^1], 2026-05-01T01:29:27,470 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,471 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,471 package, please make sure that 'fibsem.detection' is explicitly added 2026-05-01T01:29:27,471 to the `packages` configuration field. 2026-05-01T01:29:27,472 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,472 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,473 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,473 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,474 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,475 If you don't want 'fibsem.detection' to be distributed and are 2026-05-01T01:29:27,475 already explicitly excluding 'fibsem.detection' via 2026-05-01T01:29:27,476 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,476 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,477 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,477 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,478 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,480 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,480 even if it does not contain any `.py` files. 2026-05-01T01:29:27,480 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,481 directory, all directories are treated like packages. 2026-05-01T01:29:27,481 ******************************************************************************** 2026-05-01T01:29:27,482 !! 2026-05-01T01:29:27,483 check.warn(importable) 2026-05-01T01:29:27,484 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection.test_images' is absent from the `packages` configuration. 2026-05-01T01:29:27,484 !! 2026-05-01T01:29:27,485 ******************************************************************************** 2026-05-01T01:29:27,486 ############################ 2026-05-01T01:29:27,486 # Package would be ignored # 2026-05-01T01:29:27,487 ############################ 2026-05-01T01:29:27,487 Python recognizes 'fibsem.detection.test_images' as an importable package[^1], 2026-05-01T01:29:27,488 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,489 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,489 package, please make sure that 'fibsem.detection.test_images' is explicitly added 2026-05-01T01:29:27,490 to the `packages` configuration field. 2026-05-01T01:29:27,491 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,491 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,492 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,493 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,494 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,495 If you don't want 'fibsem.detection.test_images' to be distributed and are 2026-05-01T01:29:27,495 already explicitly excluding 'fibsem.detection.test_images' via 2026-05-01T01:29:27,496 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,497 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,497 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,498 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,499 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,500 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,500 even if it does not contain any `.py` files. 2026-05-01T01:29:27,501 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,501 directory, all directories are treated like packages. 2026-05-01T01:29:27,501 ******************************************************************************** 2026-05-01T01:29:27,502 !! 2026-05-01T01:29:27,502 check.warn(importable) 2026-05-01T01:29:27,503 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection.test_images.serial' is absent from the `packages` configuration. 2026-05-01T01:29:27,503 !! 2026-05-01T01:29:27,504 ******************************************************************************** 2026-05-01T01:29:27,505 ############################ 2026-05-01T01:29:27,505 # Package would be ignored # 2026-05-01T01:29:27,506 ############################ 2026-05-01T01:29:27,506 Python recognizes 'fibsem.detection.test_images.serial' as an importable package[^1], 2026-05-01T01:29:27,507 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,508 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,508 package, please make sure that 'fibsem.detection.test_images.serial' is explicitly added 2026-05-01T01:29:27,509 to the `packages` configuration field. 2026-05-01T01:29:27,510 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,510 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,511 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,512 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,513 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,514 If you don't want 'fibsem.detection.test_images.serial' to be distributed and are 2026-05-01T01:29:27,514 already explicitly excluding 'fibsem.detection.test_images.serial' via 2026-05-01T01:29:27,515 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,515 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,516 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,517 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,518 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,519 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,520 even if it does not contain any `.py` files. 2026-05-01T01:29:27,520 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,521 directory, all directories are treated like packages. 2026-05-01T01:29:27,521 ******************************************************************************** 2026-05-01T01:29:27,522 !! 2026-05-01T01:29:27,523 check.warn(importable) 2026-05-01T01:29:27,524 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.imaging' is absent from the `packages` configuration. 2026-05-01T01:29:27,524 !! 2026-05-01T01:29:27,525 ******************************************************************************** 2026-05-01T01:29:27,526 ############################ 2026-05-01T01:29:27,526 # Package would be ignored # 2026-05-01T01:29:27,527 ############################ 2026-05-01T01:29:27,527 Python recognizes 'fibsem.imaging' as an importable package[^1], 2026-05-01T01:29:27,527 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,528 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,528 package, please make sure that 'fibsem.imaging' is explicitly added 2026-05-01T01:29:27,529 to the `packages` configuration field. 2026-05-01T01:29:27,529 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,530 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,530 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,531 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,532 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,532 If you don't want 'fibsem.imaging' to be distributed and are 2026-05-01T01:29:27,533 already explicitly excluding 'fibsem.imaging' via 2026-05-01T01:29:27,533 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,534 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,534 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,535 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,536 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,538 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,538 even if it does not contain any `.py` files. 2026-05-01T01:29:27,539 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,540 directory, all directories are treated like packages. 2026-05-01T01:29:27,540 ******************************************************************************** 2026-05-01T01:29:27,541 !! 2026-05-01T01:29:27,542 check.warn(importable) 2026-05-01T01:29:27,543 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.imaging.tests' is absent from the `packages` configuration. 2026-05-01T01:29:27,543 !! 2026-05-01T01:29:27,544 ******************************************************************************** 2026-05-01T01:29:27,544 ############################ 2026-05-01T01:29:27,545 # Package would be ignored # 2026-05-01T01:29:27,545 ############################ 2026-05-01T01:29:27,546 Python recognizes 'fibsem.imaging.tests' as an importable package[^1], 2026-05-01T01:29:27,546 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,547 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,548 package, please make sure that 'fibsem.imaging.tests' is explicitly added 2026-05-01T01:29:27,548 to the `packages` configuration field. 2026-05-01T01:29:27,550 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,550 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,551 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,552 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,553 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,554 If you don't want 'fibsem.imaging.tests' to be distributed and are 2026-05-01T01:29:27,554 already explicitly excluding 'fibsem.imaging.tests' via 2026-05-01T01:29:27,554 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,555 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,555 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,556 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,556 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,557 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,558 even if it does not contain any `.py` files. 2026-05-01T01:29:27,558 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,559 directory, all directories are treated like packages. 2026-05-01T01:29:27,559 ******************************************************************************** 2026-05-01T01:29:27,560 !! 2026-05-01T01:29:27,560 check.warn(importable) 2026-05-01T01:29:27,560 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.microscopes' is absent from the `packages` configuration. 2026-05-01T01:29:27,561 !! 2026-05-01T01:29:27,562 ******************************************************************************** 2026-05-01T01:29:27,562 ############################ 2026-05-01T01:29:27,563 # Package would be ignored # 2026-05-01T01:29:27,563 ############################ 2026-05-01T01:29:27,564 Python recognizes 'fibsem.microscopes' as an importable package[^1], 2026-05-01T01:29:27,564 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,566 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,566 package, please make sure that 'fibsem.microscopes' is explicitly added 2026-05-01T01:29:27,567 to the `packages` configuration field. 2026-05-01T01:29:27,568 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,568 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,569 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,570 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,571 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,572 If you don't want 'fibsem.microscopes' to be distributed and are 2026-05-01T01:29:27,572 already explicitly excluding 'fibsem.microscopes' via 2026-05-01T01:29:27,573 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,573 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,574 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,575 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,576 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,577 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,578 even if it does not contain any `.py` files. 2026-05-01T01:29:27,578 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,579 directory, all directories are treated like packages. 2026-05-01T01:29:27,580 ******************************************************************************** 2026-05-01T01:29:27,580 !! 2026-05-01T01:29:27,581 check.warn(importable) 2026-05-01T01:29:27,581 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling' is absent from the `packages` configuration. 2026-05-01T01:29:27,582 !! 2026-05-01T01:29:27,583 ******************************************************************************** 2026-05-01T01:29:27,583 ############################ 2026-05-01T01:29:27,584 # Package would be ignored # 2026-05-01T01:29:27,584 ############################ 2026-05-01T01:29:27,585 Python recognizes 'fibsem.milling' as an importable package[^1], 2026-05-01T01:29:27,585 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,586 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,586 package, please make sure that 'fibsem.milling' is explicitly added 2026-05-01T01:29:27,587 to the `packages` configuration field. 2026-05-01T01:29:27,588 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,588 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,588 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,589 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,590 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,592 If you don't want 'fibsem.milling' to be distributed and are 2026-05-01T01:29:27,592 already explicitly excluding 'fibsem.milling' via 2026-05-01T01:29:27,593 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,593 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,594 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,595 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,597 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,598 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,599 even if it does not contain any `.py` files. 2026-05-01T01:29:27,599 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,600 directory, all directories are treated like packages. 2026-05-01T01:29:27,601 ******************************************************************************** 2026-05-01T01:29:27,602 !! 2026-05-01T01:29:27,603 check.warn(importable) 2026-05-01T01:29:27,603 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling.patterning' is absent from the `packages` configuration. 2026-05-01T01:29:27,604 !! 2026-05-01T01:29:27,605 ******************************************************************************** 2026-05-01T01:29:27,605 ############################ 2026-05-01T01:29:27,606 # Package would be ignored # 2026-05-01T01:29:27,606 ############################ 2026-05-01T01:29:27,607 Python recognizes 'fibsem.milling.patterning' as an importable package[^1], 2026-05-01T01:29:27,607 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,609 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,609 package, please make sure that 'fibsem.milling.patterning' is explicitly added 2026-05-01T01:29:27,610 to the `packages` configuration field. 2026-05-01T01:29:27,611 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,612 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,613 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,614 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,615 If you don't want 'fibsem.milling.patterning' to be distributed and are 2026-05-01T01:29:27,615 already explicitly excluding 'fibsem.milling.patterning' via 2026-05-01T01:29:27,616 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,616 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,617 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,617 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,618 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,620 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,620 even if it does not contain any `.py` files. 2026-05-01T01:29:27,620 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,621 directory, all directories are treated like packages. 2026-05-01T01:29:27,621 ******************************************************************************** 2026-05-01T01:29:27,622 !! 2026-05-01T01:29:27,623 check.warn(importable) 2026-05-01T01:29:27,623 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling.strategy' is absent from the `packages` configuration. 2026-05-01T01:29:27,624 !! 2026-05-01T01:29:27,625 ******************************************************************************** 2026-05-01T01:29:27,625 ############################ 2026-05-01T01:29:27,626 # Package would be ignored # 2026-05-01T01:29:27,626 ############################ 2026-05-01T01:29:27,627 Python recognizes 'fibsem.milling.strategy' as an importable package[^1], 2026-05-01T01:29:27,627 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,628 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,628 package, please make sure that 'fibsem.milling.strategy' is explicitly added 2026-05-01T01:29:27,629 to the `packages` configuration field. 2026-05-01T01:29:27,630 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,630 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,631 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,632 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,632 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,634 If you don't want 'fibsem.milling.strategy' to be distributed and are 2026-05-01T01:29:27,634 already explicitly excluding 'fibsem.milling.strategy' via 2026-05-01T01:29:27,634 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,635 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,635 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,637 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,639 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,640 even if it does not contain any `.py` files. 2026-05-01T01:29:27,640 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,640 directory, all directories are treated like packages. 2026-05-01T01:29:27,641 ******************************************************************************** 2026-05-01T01:29:27,642 !! 2026-05-01T01:29:27,642 check.warn(importable) 2026-05-01T01:29:27,643 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation' is absent from the `packages` configuration. 2026-05-01T01:29:27,643 !! 2026-05-01T01:29:27,644 ******************************************************************************** 2026-05-01T01:29:27,644 ############################ 2026-05-01T01:29:27,645 # Package would be ignored # 2026-05-01T01:29:27,645 ############################ 2026-05-01T01:29:27,645 Python recognizes 'fibsem.segmentation' as an importable package[^1], 2026-05-01T01:29:27,646 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,647 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,647 package, please make sure that 'fibsem.segmentation' is explicitly added 2026-05-01T01:29:27,648 to the `packages` configuration field. 2026-05-01T01:29:27,649 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,649 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,650 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,651 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,652 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,653 If you don't want 'fibsem.segmentation' to be distributed and are 2026-05-01T01:29:27,653 already explicitly excluding 'fibsem.segmentation' via 2026-05-01T01:29:27,654 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,654 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,655 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,656 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,656 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,658 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,658 even if it does not contain any `.py` files. 2026-05-01T01:29:27,659 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,659 directory, all directories are treated like packages. 2026-05-01T01:29:27,660 ******************************************************************************** 2026-05-01T01:29:27,661 !! 2026-05-01T01:29:27,661 check.warn(importable) 2026-05-01T01:29:27,662 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs' is absent from the `packages` configuration. 2026-05-01T01:29:27,662 !! 2026-05-01T01:29:27,663 ******************************************************************************** 2026-05-01T01:29:27,664 ############################ 2026-05-01T01:29:27,664 # Package would be ignored # 2026-05-01T01:29:27,665 ############################ 2026-05-01T01:29:27,666 Python recognizes 'fibsem.segmentation.docs' as an importable package[^1], 2026-05-01T01:29:27,666 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,667 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,668 package, please make sure that 'fibsem.segmentation.docs' is explicitly added 2026-05-01T01:29:27,668 to the `packages` configuration field. 2026-05-01T01:29:27,669 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,669 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,670 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,671 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,672 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,672 If you don't want 'fibsem.segmentation.docs' to be distributed and are 2026-05-01T01:29:27,673 already explicitly excluding 'fibsem.segmentation.docs' via 2026-05-01T01:29:27,673 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,674 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,674 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,675 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,676 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,677 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,678 even if it does not contain any `.py` files. 2026-05-01T01:29:27,678 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,679 directory, all directories are treated like packages. 2026-05-01T01:29:27,679 ******************************************************************************** 2026-05-01T01:29:27,680 !! 2026-05-01T01:29:27,681 check.warn(importable) 2026-05-01T01:29:27,681 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.combined' is absent from the `packages` configuration. 2026-05-01T01:29:27,682 !! 2026-05-01T01:29:27,683 ******************************************************************************** 2026-05-01T01:29:27,684 ############################ 2026-05-01T01:29:27,684 # Package would be ignored # 2026-05-01T01:29:27,685 ############################ 2026-05-01T01:29:27,685 Python recognizes 'fibsem.segmentation.docs.imgs.combined' as an importable package[^1], 2026-05-01T01:29:27,686 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,687 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,688 package, please make sure that 'fibsem.segmentation.docs.imgs.combined' is explicitly added 2026-05-01T01:29:27,688 to the `packages` configuration field. 2026-05-01T01:29:27,689 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,690 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,690 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,691 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,692 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,693 If you don't want 'fibsem.segmentation.docs.imgs.combined' to be distributed and are 2026-05-01T01:29:27,694 already explicitly excluding 'fibsem.segmentation.docs.imgs.combined' via 2026-05-01T01:29:27,694 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,695 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,695 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,696 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,697 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,698 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,698 even if it does not contain any `.py` files. 2026-05-01T01:29:27,699 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,699 directory, all directories are treated like packages. 2026-05-01T01:29:27,700 ******************************************************************************** 2026-05-01T01:29:27,701 !! 2026-05-01T01:29:27,701 check.warn(importable) 2026-05-01T01:29:27,702 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.labelled' is absent from the `packages` configuration. 2026-05-01T01:29:27,702 !! 2026-05-01T01:29:27,703 ******************************************************************************** 2026-05-01T01:29:27,703 ############################ 2026-05-01T01:29:27,704 # Package would be ignored # 2026-05-01T01:29:27,705 ############################ 2026-05-01T01:29:27,705 Python recognizes 'fibsem.segmentation.docs.imgs.labelled' as an importable package[^1], 2026-05-01T01:29:27,705 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,706 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,707 package, please make sure that 'fibsem.segmentation.docs.imgs.labelled' is explicitly added 2026-05-01T01:29:27,707 to the `packages` configuration field. 2026-05-01T01:29:27,709 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,710 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,710 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,711 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,712 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,713 If you don't want 'fibsem.segmentation.docs.imgs.labelled' to be distributed and are 2026-05-01T01:29:27,714 already explicitly excluding 'fibsem.segmentation.docs.imgs.labelled' via 2026-05-01T01:29:27,714 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,715 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,716 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,717 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,718 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,719 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,720 even if it does not contain any `.py` files. 2026-05-01T01:29:27,721 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,721 directory, all directories are treated like packages. 2026-05-01T01:29:27,722 ******************************************************************************** 2026-05-01T01:29:27,723 !! 2026-05-01T01:29:27,723 check.warn(importable) 2026-05-01T01:29:27,724 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.raw' is absent from the `packages` configuration. 2026-05-01T01:29:27,724 !! 2026-05-01T01:29:27,725 ******************************************************************************** 2026-05-01T01:29:27,725 ############################ 2026-05-01T01:29:27,726 # Package would be ignored # 2026-05-01T01:29:27,726 ############################ 2026-05-01T01:29:27,726 Python recognizes 'fibsem.segmentation.docs.imgs.raw' as an importable package[^1], 2026-05-01T01:29:27,727 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,728 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,728 package, please make sure that 'fibsem.segmentation.docs.imgs.raw' is explicitly added 2026-05-01T01:29:27,729 to the `packages` configuration field. 2026-05-01T01:29:27,729 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,730 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,730 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,731 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,732 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,733 If you don't want 'fibsem.segmentation.docs.imgs.raw' to be distributed and are 2026-05-01T01:29:27,734 already explicitly excluding 'fibsem.segmentation.docs.imgs.raw' via 2026-05-01T01:29:27,734 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,735 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,735 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,736 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,737 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,739 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,739 even if it does not contain any `.py` files. 2026-05-01T01:29:27,739 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,740 directory, all directories are treated like packages. 2026-05-01T01:29:27,740 ******************************************************************************** 2026-05-01T01:29:27,741 !! 2026-05-01T01:29:27,742 check.warn(importable) 2026-05-01T01:29:27,742 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.models' is absent from the `packages` configuration. 2026-05-01T01:29:27,743 !! 2026-05-01T01:29:27,744 ******************************************************************************** 2026-05-01T01:29:27,744 ############################ 2026-05-01T01:29:27,745 # Package would be ignored # 2026-05-01T01:29:27,745 ############################ 2026-05-01T01:29:27,746 Python recognizes 'fibsem.segmentation.models' as an importable package[^1], 2026-05-01T01:29:27,747 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,747 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,748 package, please make sure that 'fibsem.segmentation.models' is explicitly added 2026-05-01T01:29:27,748 to the `packages` configuration field. 2026-05-01T01:29:27,750 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,750 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,751 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,752 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,753 If you don't want 'fibsem.segmentation.models' to be distributed and are 2026-05-01T01:29:27,753 already explicitly excluding 'fibsem.segmentation.models' via 2026-05-01T01:29:27,754 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,754 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,754 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,755 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,756 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,758 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,758 even if it does not contain any `.py` files. 2026-05-01T01:29:27,758 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,759 directory, all directories are treated like packages. 2026-05-01T01:29:27,759 ******************************************************************************** 2026-05-01T01:29:27,760 !! 2026-05-01T01:29:27,761 check.warn(importable) 2026-05-01T01:29:27,761 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.server' is absent from the `packages` configuration. 2026-05-01T01:29:27,762 !! 2026-05-01T01:29:27,763 ******************************************************************************** 2026-05-01T01:29:27,763 ############################ 2026-05-01T01:29:27,764 # Package would be ignored # 2026-05-01T01:29:27,764 ############################ 2026-05-01T01:29:27,765 Python recognizes 'fibsem.server' as an importable package[^1], 2026-05-01T01:29:27,765 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,766 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,767 package, please make sure that 'fibsem.server' is explicitly added 2026-05-01T01:29:27,767 to the `packages` configuration field. 2026-05-01T01:29:27,768 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,769 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,769 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,770 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,771 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,772 If you don't want 'fibsem.server' to be distributed and are 2026-05-01T01:29:27,773 already explicitly excluding 'fibsem.server' via 2026-05-01T01:29:27,773 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,774 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,774 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,775 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,776 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,777 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,778 even if it does not contain any `.py` files. 2026-05-01T01:29:27,778 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,779 directory, all directories are treated like packages. 2026-05-01T01:29:27,779 ******************************************************************************** 2026-05-01T01:29:27,780 !! 2026-05-01T01:29:27,780 check.warn(importable) 2026-05-01T01:29:27,781 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.tools' is absent from the `packages` configuration. 2026-05-01T01:29:27,781 !! 2026-05-01T01:29:27,782 ******************************************************************************** 2026-05-01T01:29:27,782 ############################ 2026-05-01T01:29:27,783 # Package would be ignored # 2026-05-01T01:29:27,783 ############################ 2026-05-01T01:29:27,784 Python recognizes 'fibsem.tools' as an importable package[^1], 2026-05-01T01:29:27,784 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,785 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,785 package, please make sure that 'fibsem.tools' is explicitly added 2026-05-01T01:29:27,786 to the `packages` configuration field. 2026-05-01T01:29:27,787 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,787 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,788 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,789 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,790 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,791 If you don't want 'fibsem.tools' to be distributed and are 2026-05-01T01:29:27,791 already explicitly excluding 'fibsem.tools' via 2026-05-01T01:29:27,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,793 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,794 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,795 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,796 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,796 even if it does not contain any `.py` files. 2026-05-01T01:29:27,797 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,797 directory, all directories are treated like packages. 2026-05-01T01:29:27,798 ******************************************************************************** 2026-05-01T01:29:27,799 !! 2026-05-01T01:29:27,799 check.warn(importable) 2026-05-01T01:29:27,800 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui' is absent from the `packages` configuration. 2026-05-01T01:29:27,801 !! 2026-05-01T01:29:27,801 ******************************************************************************** 2026-05-01T01:29:27,802 ############################ 2026-05-01T01:29:27,802 # Package would be ignored # 2026-05-01T01:29:27,803 ############################ 2026-05-01T01:29:27,803 Python recognizes 'fibsem.ui' as an importable package[^1], 2026-05-01T01:29:27,804 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,805 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,806 package, please make sure that 'fibsem.ui' is explicitly added 2026-05-01T01:29:27,806 to the `packages` configuration field. 2026-05-01T01:29:27,807 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,807 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,808 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,808 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,809 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,810 If you don't want 'fibsem.ui' to be distributed and are 2026-05-01T01:29:27,810 already explicitly excluding 'fibsem.ui' via 2026-05-01T01:29:27,811 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,811 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,811 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,812 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,813 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,815 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,815 even if it does not contain any `.py` files. 2026-05-01T01:29:27,816 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,816 directory, all directories are treated like packages. 2026-05-01T01:29:27,817 ******************************************************************************** 2026-05-01T01:29:27,818 !! 2026-05-01T01:29:27,818 check.warn(importable) 2026-05-01T01:29:27,819 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.fm.widgets' is absent from the `packages` configuration. 2026-05-01T01:29:27,819 !! 2026-05-01T01:29:27,820 ******************************************************************************** 2026-05-01T01:29:27,821 ############################ 2026-05-01T01:29:27,821 # Package would be ignored # 2026-05-01T01:29:27,822 ############################ 2026-05-01T01:29:27,822 Python recognizes 'fibsem.ui.fm.widgets' as an importable package[^1], 2026-05-01T01:29:27,823 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,824 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,824 package, please make sure that 'fibsem.ui.fm.widgets' is explicitly added 2026-05-01T01:29:27,825 to the `packages` configuration field. 2026-05-01T01:29:27,825 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,826 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,826 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,827 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,829 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,829 If you don't want 'fibsem.ui.fm.widgets' to be distributed and are 2026-05-01T01:29:27,830 already explicitly excluding 'fibsem.ui.fm.widgets' via 2026-05-01T01:29:27,831 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,831 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,832 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,833 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,834 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,835 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,835 even if it does not contain any `.py` files. 2026-05-01T01:29:27,836 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,836 directory, all directories are treated like packages. 2026-05-01T01:29:27,837 ******************************************************************************** 2026-05-01T01:29:27,838 !! 2026-05-01T01:29:27,838 check.warn(importable) 2026-05-01T01:29:27,839 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.icons' is absent from the `packages` configuration. 2026-05-01T01:29:27,839 !! 2026-05-01T01:29:27,840 ******************************************************************************** 2026-05-01T01:29:27,840 ############################ 2026-05-01T01:29:27,841 # Package would be ignored # 2026-05-01T01:29:27,841 ############################ 2026-05-01T01:29:27,842 Python recognizes 'fibsem.ui.icons' as an importable package[^1], 2026-05-01T01:29:27,842 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,843 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,843 package, please make sure that 'fibsem.ui.icons' is explicitly added 2026-05-01T01:29:27,844 to the `packages` configuration field. 2026-05-01T01:29:27,845 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,845 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,846 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,847 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,848 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,849 If you don't want 'fibsem.ui.icons' to be distributed and are 2026-05-01T01:29:27,850 already explicitly excluding 'fibsem.ui.icons' via 2026-05-01T01:29:27,850 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,850 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,851 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,852 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,853 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,854 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,855 even if it does not contain any `.py` files. 2026-05-01T01:29:27,855 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,856 directory, all directories are treated like packages. 2026-05-01T01:29:27,856 ******************************************************************************** 2026-05-01T01:29:27,857 !! 2026-05-01T01:29:27,858 check.warn(importable) 2026-05-01T01:29:27,858 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.napari' is absent from the `packages` configuration. 2026-05-01T01:29:27,859 !! 2026-05-01T01:29:27,860 ******************************************************************************** 2026-05-01T01:29:27,861 ############################ 2026-05-01T01:29:27,861 # Package would be ignored # 2026-05-01T01:29:27,862 ############################ 2026-05-01T01:29:27,862 Python recognizes 'fibsem.ui.napari' as an importable package[^1], 2026-05-01T01:29:27,862 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,863 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,864 package, please make sure that 'fibsem.ui.napari' is explicitly added 2026-05-01T01:29:27,864 to the `packages` configuration field. 2026-05-01T01:29:27,865 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,866 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,866 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,867 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,868 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,869 If you don't want 'fibsem.ui.napari' to be distributed and are 2026-05-01T01:29:27,869 already explicitly excluding 'fibsem.ui.napari' via 2026-05-01T01:29:27,869 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,870 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,870 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,871 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,872 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,873 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,874 even if it does not contain any `.py` files. 2026-05-01T01:29:27,875 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,875 directory, all directories are treated like packages. 2026-05-01T01:29:27,875 ******************************************************************************** 2026-05-01T01:29:27,876 !! 2026-05-01T01:29:27,877 check.warn(importable) 2026-05-01T01:29:27,877 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.qtdesigner_files' is absent from the `packages` configuration. 2026-05-01T01:29:27,878 !! 2026-05-01T01:29:27,879 ******************************************************************************** 2026-05-01T01:29:27,879 ############################ 2026-05-01T01:29:27,880 # Package would be ignored # 2026-05-01T01:29:27,880 ############################ 2026-05-01T01:29:27,881 Python recognizes 'fibsem.ui.qtdesigner_files' as an importable package[^1], 2026-05-01T01:29:27,881 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,882 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,883 package, please make sure that 'fibsem.ui.qtdesigner_files' is explicitly added 2026-05-01T01:29:27,883 to the `packages` configuration field. 2026-05-01T01:29:27,884 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,885 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,885 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,886 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,887 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,889 If you don't want 'fibsem.ui.qtdesigner_files' to be distributed and are 2026-05-01T01:29:27,889 already explicitly excluding 'fibsem.ui.qtdesigner_files' via 2026-05-01T01:29:27,889 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,890 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,890 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,891 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,892 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,893 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,893 even if it does not contain any `.py` files. 2026-05-01T01:29:27,894 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,894 directory, all directories are treated like packages. 2026-05-01T01:29:27,895 ******************************************************************************** 2026-05-01T01:29:27,895 !! 2026-05-01T01:29:27,896 check.warn(importable) 2026-05-01T01:29:27,896 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.widgets' is absent from the `packages` configuration. 2026-05-01T01:29:27,897 !! 2026-05-01T01:29:27,898 ******************************************************************************** 2026-05-01T01:29:27,898 ############################ 2026-05-01T01:29:27,899 # Package would be ignored # 2026-05-01T01:29:27,899 ############################ 2026-05-01T01:29:27,899 Python recognizes 'fibsem.ui.widgets' as an importable package[^1], 2026-05-01T01:29:27,900 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,901 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,901 package, please make sure that 'fibsem.ui.widgets' is explicitly added 2026-05-01T01:29:27,902 to the `packages` configuration field. 2026-05-01T01:29:27,903 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,903 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,904 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,905 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,906 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,907 If you don't want 'fibsem.ui.widgets' to be distributed and are 2026-05-01T01:29:27,907 already explicitly excluding 'fibsem.ui.widgets' via 2026-05-01T01:29:27,908 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,908 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,909 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,910 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,911 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,913 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,914 even if it does not contain any `.py` files. 2026-05-01T01:29:27,914 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,915 directory, all directories are treated like packages. 2026-05-01T01:29:27,915 ******************************************************************************** 2026-05-01T01:29:27,916 !! 2026-05-01T01:29:27,917 check.warn(importable) 2026-05-01T01:29:27,917 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.widgets.tests' is absent from the `packages` configuration. 2026-05-01T01:29:27,917 !! 2026-05-01T01:29:27,918 ******************************************************************************** 2026-05-01T01:29:27,919 ############################ 2026-05-01T01:29:27,919 # Package would be ignored # 2026-05-01T01:29:27,919 ############################ 2026-05-01T01:29:27,920 Python recognizes 'fibsem.ui.widgets.tests' as an importable package[^1], 2026-05-01T01:29:27,920 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,921 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,921 package, please make sure that 'fibsem.ui.widgets.tests' is explicitly added 2026-05-01T01:29:27,922 to the `packages` configuration field. 2026-05-01T01:29:27,923 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,923 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,924 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,924 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,925 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,926 If you don't want 'fibsem.ui.widgets.tests' to be distributed and are 2026-05-01T01:29:27,934 already explicitly excluding 'fibsem.ui.widgets.tests' via 2026-05-01T01:29:27,942 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,943 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,943 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,944 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,946 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,947 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,948 even if it does not contain any `.py` files. 2026-05-01T01:29:27,949 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,949 directory, all directories are treated like packages. 2026-05-01T01:29:27,950 ******************************************************************************** 2026-05-01T01:29:27,954 !! 2026-05-01T01:29:27,955 check.warn(importable) 2026-05-01T01:29:27,957 /tmp/pip-build-env-9rkx946_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.util' is absent from the `packages` configuration. 2026-05-01T01:29:27,960 !! 2026-05-01T01:29:27,969 ******************************************************************************** 2026-05-01T01:29:27,969 ############################ 2026-05-01T01:29:27,970 # Package would be ignored # 2026-05-01T01:29:27,971 ############################ 2026-05-01T01:29:27,971 Python recognizes 'fibsem.util' as an importable package[^1], 2026-05-01T01:29:27,972 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:29:27,973 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:29:27,974 package, please make sure that 'fibsem.util' is explicitly added 2026-05-01T01:29:27,974 to the `packages` configuration field. 2026-05-01T01:29:27,976 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:29:27,977 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:29:27,977 instead of `find_packages(...)`/`find:`). 2026-05-01T01:29:27,978 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:29:27,980 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:29:27,980 If you don't want 'fibsem.util' to be distributed and are 2026-05-01T01:29:27,981 already explicitly excluding 'fibsem.util' via 2026-05-01T01:29:27,981 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:29:27,982 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:29:27,983 combination with a more fine grained `package-data` configuration. 2026-05-01T01:29:27,983 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:29:27,984 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:29:27,986 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:29:27,987 even if it does not contain any `.py` files. 2026-05-01T01:29:27,987 On the other hand, currently there is no concept of package data 2026-05-01T01:29:27,987 directory, all directories are treated like packages. 2026-05-01T01:29:27,988 ******************************************************************************** 2026-05-01T01:29:27,989 !! 2026-05-01T01:29:27,990 check.warn(importable) 2026-05-01T01:29:27,990 creating build/lib/fibsem/applications 2026-05-01T01:29:27,991 copying fibsem/applications/__init__.py -> build/lib/fibsem/applications 2026-05-01T01:29:27,991 creating build/lib/fibsem/applications/autolamella 2026-05-01T01:29:27,992 copying fibsem/applications/autolamella/__init__.py -> build/lib/fibsem/applications/autolamella 2026-05-01T01:29:27,992 copying fibsem/applications/autolamella/config.py -> build/lib/fibsem/applications/autolamella 2026-05-01T01:29:27,993 copying fibsem/applications/autolamella/structures.py -> build/lib/fibsem/applications/autolamella 2026-05-01T01:29:27,993 copying fibsem/applications/autolamella/task_manager_queue.md -> build/lib/fibsem/applications/autolamella 2026-05-01T01:29:27,994 creating build/lib/fibsem/applications/autolamella/compat 2026-05-01T01:29:27,995 copying fibsem/applications/autolamella/compat/notebook.ipynb -> build/lib/fibsem/applications/autolamella/compat 2026-05-01T01:29:27,995 copying fibsem/applications/autolamella/compat/odemis.py -> build/lib/fibsem/applications/autolamella/compat 2026-05-01T01:29:27,996 creating build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:29:27,996 copying fibsem/applications/autolamella/protocol/.gitkeep -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:29:27,997 copying fibsem/applications/autolamella/protocol/__init__.py -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:29:27,997 copying fibsem/applications/autolamella/protocol/constants.py -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:29:27,998 copying fibsem/applications/autolamella/protocol/legacy.py -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:29:27,999 copying fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:29:28,000 copying fibsem/applications/autolamella/protocol/task-protocol.yaml -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:29:28,000 copying fibsem/applications/autolamella/protocol/validation.py -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:29:28,001 creating build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:28,002 copying fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:28,002 copying fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:28,003 copying fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:28,004 copying fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:28,004 copying fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:28,005 creating build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:29:28,005 copying fibsem/applications/autolamella/tools/__init__.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:29:28,006 copying fibsem/applications/autolamella/tools/data.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:29:28,006 copying fibsem/applications/autolamella/tools/notebook.ipynb -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:29:28,007 copying fibsem/applications/autolamella/tools/reporting.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:29:28,007 copying fibsem/applications/autolamella/tools/review.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:29:28,008 copying fibsem/applications/autolamella/tools/stats.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:29:28,009 copying fibsem/applications/autolamella/tools/upload_to_hf.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:29:28,009 creating build/lib/fibsem/applications/autolamella/ui 2026-05-01T01:29:28,010 copying fibsem/applications/autolamella/ui/AutoLamellaMainUI.py -> build/lib/fibsem/applications/autolamella/ui 2026-05-01T01:29:28,010 copying fibsem/applications/autolamella/ui/AutoLamellaUI.py -> build/lib/fibsem/applications/autolamella/ui 2026-05-01T01:29:28,011 copying fibsem/applications/autolamella/ui/__init__.py -> build/lib/fibsem/applications/autolamella/ui 2026-05-01T01:29:28,011 copying fibsem/applications/autolamella/ui/run_ui.py -> build/lib/fibsem/applications/autolamella/ui 2026-05-01T01:29:28,012 creating build/lib/fibsem/applications/autolamella/ui/tests 2026-05-01T01:29:28,012 copying fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py -> build/lib/fibsem/applications/autolamella/ui/tests 2026-05-01T01:29:28,013 creating build/lib/fibsem/applications/autolamella/workflows 2026-05-01T01:29:28,013 copying fibsem/applications/autolamella/workflows/_default_milling_config.py -> build/lib/fibsem/applications/autolamella/workflows 2026-05-01T01:29:28,014 copying fibsem/applications/autolamella/workflows/core.py -> build/lib/fibsem/applications/autolamella/workflows 2026-05-01T01:29:28,014 copying fibsem/applications/autolamella/workflows/ui.py -> build/lib/fibsem/applications/autolamella/workflows 2026-05-01T01:29:28,015 creating build/lib/fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:29:28,015 copying fibsem/applications/autolamella/workflows/legacy/autoliftout.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:29:28,016 copying fibsem/applications/autolamella/workflows/legacy/experimental.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:29:28,016 copying fibsem/applications/autolamella/workflows/legacy/serial.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:29:28,017 creating build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,017 copying fibsem/applications/autolamella/workflows/tasks/__init__.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,018 copying fibsem/applications/autolamella/workflows/tasks/base.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,019 copying fibsem/applications/autolamella/workflows/tasks/basic_milling.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,019 copying fibsem/applications/autolamella/workflows/tasks/fiducial.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,020 copying fibsem/applications/autolamella/workflows/tasks/grid_tasks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,020 copying fibsem/applications/autolamella/workflows/tasks/hooks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,021 copying fibsem/applications/autolamella/workflows/tasks/manager.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,021 copying fibsem/applications/autolamella/workflows/tasks/polishing.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,022 copying fibsem/applications/autolamella/workflows/tasks/queue.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,022 copying fibsem/applications/autolamella/workflows/tasks/reference_image.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,023 copying fibsem/applications/autolamella/workflows/tasks/rough.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,023 copying fibsem/applications/autolamella/workflows/tasks/select_position.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,024 copying fibsem/applications/autolamella/workflows/tasks/spot_burn.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,024 copying fibsem/applications/autolamella/workflows/tasks/tasks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,025 copying fibsem/applications/autolamella/workflows/tasks/test_hooks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,025 copying fibsem/applications/autolamella/workflows/tasks/trench.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,026 copying fibsem/applications/autolamella/workflows/tasks/undercut.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:28,026 creating build/lib/fibsem/chat 2026-05-01T01:29:28,027 copying fibsem/chat/.gitignore -> build/lib/fibsem/chat 2026-05-01T01:29:28,028 copying fibsem/chat/main.py -> build/lib/fibsem/chat 2026-05-01T01:29:28,028 copying fibsem/chat/requirements.txt -> build/lib/fibsem/chat 2026-05-01T01:29:28,029 creating build/lib/fibsem/config 2026-05-01T01:29:28,029 copying fibsem/config/microscope-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:29:28,030 copying fibsem/config/odemis-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:29:28,031 copying fibsem/config/sample-holder.yaml -> build/lib/fibsem/config 2026-05-01T01:29:28,031 copying fibsem/config/sim-arctis-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:29:28,032 copying fibsem/config/tescan-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:29:28,032 copying fibsem/config/tescan_manipulator.yaml -> build/lib/fibsem/config 2026-05-01T01:29:28,033 copying fibsem/config/tfs-aquilos2-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:29:28,033 copying fibsem/config/tfs-arctis-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:29:28,033 copying fibsem/config/tfs-hydra-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:29:28,034 creating build/lib/fibsem/correlation 2026-05-01T01:29:28,034 copying fibsem/correlation/README.md -> build/lib/fibsem/correlation 2026-05-01T01:29:28,035 copying fibsem/correlation/__init__.py -> build/lib/fibsem/correlation 2026-05-01T01:29:28,036 copying fibsem/correlation/app.py -> build/lib/fibsem/correlation 2026-05-01T01:29:28,036 copying fibsem/correlation/correlation_v2.py -> build/lib/fibsem/correlation 2026-05-01T01:29:28,037 copying fibsem/correlation/io.py -> build/lib/fibsem/correlation 2026-05-01T01:29:28,037 copying fibsem/correlation/util.py -> build/lib/fibsem/correlation 2026-05-01T01:29:28,038 creating build/lib/fibsem/correlation/pyto 2026-05-01T01:29:28,038 copying fibsem/correlation/pyto/__init__.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:29:28,039 copying fibsem/correlation/pyto/affine.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:29:28,039 copying fibsem/correlation/pyto/affine_2d.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:29:28,039 copying fibsem/correlation/pyto/attributes.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:29:28,040 copying fibsem/correlation/pyto/common.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:29:28,040 copying fibsem/correlation/pyto/points.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:29:28,041 copying fibsem/correlation/pyto/rigid_3d.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:29:28,041 copying fibsem/correlation/pyto/util.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:29:28,042 creating build/lib/fibsem/correlation/pyto/test 2026-05-01T01:29:28,042 copying fibsem/correlation/pyto/test/test_affine.py -> build/lib/fibsem/correlation/pyto/test 2026-05-01T01:29:28,043 copying fibsem/correlation/pyto/test/test_affine_2d.py -> build/lib/fibsem/correlation/pyto/test 2026-05-01T01:29:28,043 copying fibsem/correlation/pyto/test/test_rigid_3d.py -> build/lib/fibsem/correlation/pyto/test 2026-05-01T01:29:28,044 creating build/lib/fibsem/correlation/ui 2026-05-01T01:29:28,044 copying fibsem/correlation/ui/__init__.py -> build/lib/fibsem/correlation/ui 2026-05-01T01:29:28,044 copying fibsem/correlation/ui/config.py -> build/lib/fibsem/correlation/ui 2026-05-01T01:29:28,045 copying fibsem/correlation/ui/fm_import_wizard.py -> build/lib/fibsem/correlation/ui 2026-05-01T01:29:28,045 copying fibsem/correlation/ui/pandas_table.py -> build/lib/fibsem/correlation/ui 2026-05-01T01:29:28,046 creating build/lib/fibsem/correlation/ui/qt 2026-05-01T01:29:28,046 copying fibsem/correlation/ui/qt/tdct_fm_import_wizard.py -> build/lib/fibsem/correlation/ui/qt 2026-05-01T01:29:28,047 copying fibsem/correlation/ui/qt/tdct_main.py -> build/lib/fibsem/correlation/ui/qt 2026-05-01T01:29:28,047 creating build/lib/fibsem/detection 2026-05-01T01:29:28,048 copying fibsem/detection/__init__.py -> build/lib/fibsem/detection 2026-05-01T01:29:28,049 copying fibsem/detection/config-autolamella-liftout-hf-mega.yaml -> build/lib/fibsem/detection 2026-05-01T01:29:28,049 copying fibsem/detection/config-autolamella-liftout.yaml -> build/lib/fibsem/detection 2026-05-01T01:29:28,049 copying fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml -> build/lib/fibsem/detection 2026-05-01T01:29:28,050 copying fibsem/detection/config-autolamella-serial-liftout.yaml -> build/lib/fibsem/detection 2026-05-01T01:29:28,051 copying fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml -> build/lib/fibsem/detection 2026-05-01T01:29:28,051 copying fibsem/detection/config-autolamella-waffle-v2.yaml -> build/lib/fibsem/detection 2026-05-01T01:29:28,052 copying fibsem/detection/config-autolamella-waffle.yml -> build/lib/fibsem/detection 2026-05-01T01:29:28,052 copying fibsem/detection/config-autoliftout-dm-embryo.yml -> build/lib/fibsem/detection 2026-05-01T01:29:28,053 copying fibsem/detection/detection.py -> build/lib/fibsem/detection 2026-05-01T01:29:28,053 copying fibsem/detection/evaluation.py -> build/lib/fibsem/detection 2026-05-01T01:29:28,054 copying fibsem/detection/run_evaluation.py -> build/lib/fibsem/detection 2026-05-01T01:29:28,054 copying fibsem/detection/test_image.tif -> build/lib/fibsem/detection 2026-05-01T01:29:28,055 copying fibsem/detection/test_image_2.tif -> build/lib/fibsem/detection 2026-05-01T01:29:28,055 copying fibsem/detection/utils.py -> build/lib/fibsem/detection 2026-05-01T01:29:28,056 creating build/lib/fibsem/detection/test_images 2026-05-01T01:29:28,057 copying fibsem/detection/test_images/test_needle_mask.tif -> build/lib/fibsem/detection/test_images 2026-05-01T01:29:28,057 copying fibsem/detection/test_images/test_needle_mask2.tif -> build/lib/fibsem/detection/test_images 2026-05-01T01:29:28,058 copying fibsem/detection/test_images/test_needle_mask3.tif -> build/lib/fibsem/detection/test_images 2026-05-01T01:29:28,059 creating build/lib/fibsem/detection/test_images/serial 2026-05-01T01:29:28,059 copying fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:29:28,059 copying fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:29:28,060 copying fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:29:28,060 copying fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:29:28,061 copying fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:29:28,061 copying fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:29:28,062 copying fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:29:28,062 copying fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:29:28,063 creating build/lib/fibsem/imaging 2026-05-01T01:29:28,064 copying fibsem/imaging/.gitkeep -> build/lib/fibsem/imaging 2026-05-01T01:29:28,064 copying fibsem/imaging/__init__.py -> build/lib/fibsem/imaging 2026-05-01T01:29:28,065 copying fibsem/imaging/autogamma.py -> build/lib/fibsem/imaging 2026-05-01T01:29:28,065 copying fibsem/imaging/drawing.py -> build/lib/fibsem/imaging 2026-05-01T01:29:28,066 copying fibsem/imaging/masks.py -> build/lib/fibsem/imaging 2026-05-01T01:29:28,066 copying fibsem/imaging/spot.py -> build/lib/fibsem/imaging 2026-05-01T01:29:28,067 copying fibsem/imaging/tiled.py -> build/lib/fibsem/imaging 2026-05-01T01:29:28,067 copying fibsem/imaging/utils.py -> build/lib/fibsem/imaging 2026-05-01T01:29:28,067 creating build/lib/fibsem/imaging/tests 2026-05-01T01:29:28,068 copying fibsem/imaging/tests/__init__.py -> build/lib/fibsem/imaging/tests 2026-05-01T01:29:28,069 copying fibsem/imaging/tests/test_drawing_widget.py -> build/lib/fibsem/imaging/tests 2026-05-01T01:29:28,069 creating build/lib/fibsem/microscopes 2026-05-01T01:29:28,070 copying fibsem/microscopes/_stage.py -> build/lib/fibsem/microscopes 2026-05-01T01:29:28,070 copying fibsem/microscopes/notebook.ipynb -> build/lib/fibsem/microscopes 2026-05-01T01:29:28,071 copying fibsem/microscopes/odemis_microscope.py -> build/lib/fibsem/microscopes 2026-05-01T01:29:28,071 copying fibsem/microscopes/simulator.py -> build/lib/fibsem/microscopes 2026-05-01T01:29:28,072 copying fibsem/microscopes/tescan.py -> build/lib/fibsem/microscopes 2026-05-01T01:29:28,072 copying fibsem/microscopes/zeiss.py -> build/lib/fibsem/microscopes 2026-05-01T01:29:28,073 creating build/lib/fibsem/milling 2026-05-01T01:29:28,073 copying fibsem/milling/__init__.py -> build/lib/fibsem/milling 2026-05-01T01:29:28,074 copying fibsem/milling/base.py -> build/lib/fibsem/milling 2026-05-01T01:29:28,075 copying fibsem/milling/config.py -> build/lib/fibsem/milling 2026-05-01T01:29:28,078 copying fibsem/milling/core.py -> build/lib/fibsem/milling 2026-05-01T01:29:28,080 copying fibsem/milling/properties.py -> build/lib/fibsem/milling 2026-05-01T01:29:28,082 copying fibsem/milling/tasks.py -> build/lib/fibsem/milling 2026-05-01T01:29:28,085 creating build/lib/fibsem/milling/patterning 2026-05-01T01:29:28,086 copying fibsem/milling/patterning/__init__.py -> build/lib/fibsem/milling/patterning 2026-05-01T01:29:28,089 copying fibsem/milling/patterning/patterns2.py -> build/lib/fibsem/milling/patterning 2026-05-01T01:29:28,092 copying fibsem/milling/patterning/plotting.py -> build/lib/fibsem/milling/patterning 2026-05-01T01:29:28,095 copying fibsem/milling/patterning/utils.py -> build/lib/fibsem/milling/patterning 2026-05-01T01:29:28,098 creating build/lib/fibsem/milling/strategy 2026-05-01T01:29:28,098 copying fibsem/milling/strategy/__init__.py -> build/lib/fibsem/milling/strategy 2026-05-01T01:29:28,101 copying fibsem/milling/strategy/overtilt.py -> build/lib/fibsem/milling/strategy 2026-05-01T01:29:28,103 copying fibsem/milling/strategy/standard.py -> build/lib/fibsem/milling/strategy 2026-05-01T01:29:28,105 creating build/lib/fibsem/segmentation 2026-05-01T01:29:28,106 copying fibsem/segmentation/README.md -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,109 copying fibsem/segmentation/__init__.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,110 copying fibsem/segmentation/_nnunet.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,113 copying fibsem/segmentation/adaptive_model.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,115 copying fibsem/segmentation/augmentation.ipynb -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,117 copying fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,119 copying fibsem/segmentation/config-autolamella-mega-v4.yml -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,121 copying fibsem/segmentation/config-autolamella-mega-v5.yml -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,123 copying fibsem/segmentation/config-autolamella-waffle4.yml -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,125 copying fibsem/segmentation/config.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,127 copying fibsem/segmentation/config.yml -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,129 copying fibsem/segmentation/dataset.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,132 copying fibsem/segmentation/example.ipynb -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,135 copying fibsem/segmentation/hf_segmentation_model.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,137 copying fibsem/segmentation/huggingface.ipynb -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,140 copying fibsem/segmentation/inference.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,142 copying fibsem/segmentation/model.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,145 copying fibsem/segmentation/nnunet_model.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,147 copying fibsem/segmentation/nnunet_model_v2.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,149 copying fibsem/segmentation/onnx_model.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,152 copying fibsem/segmentation/requirements.txt -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,154 copying fibsem/segmentation/sam_model.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,156 copying fibsem/segmentation/segmentation_config.yaml -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,158 copying fibsem/segmentation/test_image.tif -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,181 copying fibsem/segmentation/train.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,184 copying fibsem/segmentation/utils.py -> build/lib/fibsem/segmentation 2026-05-01T01:29:28,187 creating build/lib/fibsem/segmentation/docs 2026-05-01T01:29:28,188 copying fibsem/segmentation/docs/example_napari.png -> build/lib/fibsem/segmentation/docs 2026-05-01T01:29:28,250 creating build/lib/fibsem/segmentation/docs/imgs/combined 2026-05-01T01:29:28,252 copying fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/lib/fibsem/segmentation/docs/imgs/combined 2026-05-01T01:29:28,282 creating build/lib/fibsem/segmentation/docs/imgs/labelled 2026-05-01T01:29:28,283 copying fibsem/segmentation/docs/imgs/labelled/label.tif -> build/lib/fibsem/segmentation/docs/imgs/labelled 2026-05-01T01:29:28,316 creating build/lib/fibsem/segmentation/docs/imgs/raw 2026-05-01T01:29:28,317 copying fibsem/segmentation/docs/imgs/raw/image.tif -> build/lib/fibsem/segmentation/docs/imgs/raw 2026-05-01T01:29:28,339 creating build/lib/fibsem/segmentation/models 2026-05-01T01:29:28,340 copying fibsem/segmentation/models/.gitkeep -> build/lib/fibsem/segmentation/models 2026-05-01T01:29:28,342 creating build/lib/fibsem/server 2026-05-01T01:29:28,343 copying fibsem/server/GAPS.md -> build/lib/fibsem/server 2026-05-01T01:29:28,345 copying fibsem/server/README.md -> build/lib/fibsem/server 2026-05-01T01:29:28,347 copying fibsem/server/__init__.py -> build/lib/fibsem/server 2026-05-01T01:29:28,350 copying fibsem/server/client.py -> build/lib/fibsem/server 2026-05-01T01:29:28,352 copying fibsem/server/models.py -> build/lib/fibsem/server 2026-05-01T01:29:28,354 copying fibsem/server/server.py -> build/lib/fibsem/server 2026-05-01T01:29:28,357 creating build/lib/fibsem/tools 2026-05-01T01:29:28,358 copying fibsem/tools/_parser.py -> build/lib/fibsem/tools 2026-05-01T01:29:28,360 copying fibsem/tools/_streamlit.py -> build/lib/fibsem/tools 2026-05-01T01:29:28,363 copying fibsem/tools/beam_shift_alignment_test.py -> build/lib/fibsem/tools 2026-05-01T01:29:28,365 copying fibsem/tools/run_manipulator_calibration.py -> build/lib/fibsem/tools 2026-05-01T01:29:28,367 copying fibsem/tools/run_split_dataset.py -> build/lib/fibsem/tools 2026-05-01T01:29:28,370 copying fibsem/tools/telemetry.py -> build/lib/fibsem/tools 2026-05-01T01:29:28,372 creating build/lib/fibsem/ui 2026-05-01T01:29:28,373 copying fibsem/ui/.gitkeep -> build/lib/fibsem/ui 2026-05-01T01:29:28,375 copying fibsem/ui/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,377 copying fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,380 copying fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,382 copying fibsem/ui/FibsemFeatureLabellingUI.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,385 copying fibsem/ui/FibsemImageSettingsWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,388 copying fibsem/ui/FibsemLabellingUI.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,391 copying fibsem/ui/FibsemManipulatorWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,394 copying fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,396 copying fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,399 copying fibsem/ui/FibsemMinimapWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,402 copying fibsem/ui/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,405 copying fibsem/ui/FibsemMovementWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,408 copying fibsem/ui/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,410 copying fibsem/ui/FibsemSpotBurnWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,413 copying fibsem/ui/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,416 copying fibsem/ui/FibsemUI.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,418 copying fibsem/ui/__init__.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,420 copying fibsem/ui/stylesheets.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,423 copying fibsem/ui/utils.py -> build/lib/fibsem/ui 2026-05-01T01:29:28,426 creating build/lib/fibsem/ui/fm/widgets 2026-05-01T01:29:28,427 copying fibsem/ui/fm/widgets/__init__.py -> build/lib/fibsem/ui/fm/widgets 2026-05-01T01:29:28,430 copying fibsem/ui/fm/widgets/display_options_dialog.py -> build/lib/fibsem/ui/fm/widgets 2026-05-01T01:29:28,432 copying fibsem/ui/fm/widgets/minimap_plot_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-05-01T01:29:28,436 copying fibsem/ui/fm/widgets/minimap_plot_widget_example.py -> build/lib/fibsem/ui/fm/widgets 2026-05-01T01:29:28,438 creating build/lib/fibsem/ui/icons 2026-05-01T01:29:28,439 copying fibsem/ui/icons/check.svg -> build/lib/fibsem/ui/icons 2026-05-01T01:29:28,441 copying fibsem/ui/icons/chevron_down.svg -> build/lib/fibsem/ui/icons 2026-05-01T01:29:28,444 copying fibsem/ui/icons/drag_handle.svg -> build/lib/fibsem/ui/icons 2026-05-01T01:29:28,446 copying fibsem/ui/icons/minus.svg -> build/lib/fibsem/ui/icons 2026-05-01T01:29:28,448 copying fibsem/ui/icons/plus.svg -> build/lib/fibsem/ui/icons 2026-05-01T01:29:28,449 creating build/lib/fibsem/ui/napari 2026-05-01T01:29:28,450 copying fibsem/ui/napari/patterns.py -> build/lib/fibsem/ui/napari 2026-05-01T01:29:28,453 copying fibsem/ui/napari/properties.py -> build/lib/fibsem/ui/napari 2026-05-01T01:29:28,455 copying fibsem/ui/napari/utilities.py -> build/lib/fibsem/ui/napari 2026-05-01T01:29:28,458 creating build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,459 copying fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,462 copying fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,464 copying fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,466 copying fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,469 copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,471 copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,474 copying fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,477 copying fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,479 copying fibsem/ui/qtdesigner_files/FibsemSpotBurnWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,481 copying fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,484 copying fibsem/ui/qtdesigner_files/FibsemUI.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,486 copying fibsem/ui/qtdesigner_files/detection_dialog.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,488 copying fibsem/ui/qtdesigner_files/image_viewer.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,491 creating build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,492 copying fibsem/ui/widgets/angle_measure.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,495 copying fibsem/ui/widgets/annotation_pin.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,498 copying fibsem/ui/widgets/autolamella_apply_protocol_dialog.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,505 copying fibsem/ui/widgets/autolamella_create_experiment_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,508 copying fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,511 copying fibsem/ui/widgets/autolamella_generate_report_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,514 copying fibsem/ui/widgets/autolamella_global_task_editor_dialog.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,517 copying fibsem/ui/widgets/autolamella_lamella_protocol_editor.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,520 copying fibsem/ui/widgets/autolamella_load_experiment_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,523 copying fibsem/ui/widgets/autolamella_load_task_protocol_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,525 copying fibsem/ui/widgets/autolamella_overview_image_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,528 copying fibsem/ui/widgets/autolamella_protocol_information_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,531 copying fibsem/ui/widgets/autolamella_task_config_editor.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,533 copying fibsem/ui/widgets/autolamella_task_config_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,536 copying fibsem/ui/widgets/beam_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,539 copying fibsem/ui/widgets/beam_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,542 copying fibsem/ui/widgets/custom_widgets.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,545 copying fibsem/ui/widgets/dataframe_table_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,547 copying fibsem/ui/widgets/detector_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,550 copying fibsem/ui/widgets/drag_distance.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,553 copying fibsem/ui/widgets/dual_beam_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,555 copying fibsem/ui/widgets/fibsem_image_flow_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,557 copying fibsem/ui/widgets/hook_config_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,560 copying fibsem/ui/widgets/hud_ticker.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,563 copying fibsem/ui/widgets/image_annotation_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,566 copying fibsem/ui/widgets/image_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,569 copying fibsem/ui/widgets/lamella_card_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,571 copying fibsem/ui/widgets/lamella_list_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,574 copying fibsem/ui/widgets/lamella_task_image_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,577 copying fibsem/ui/widgets/lamella_workflow_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,580 copying fibsem/ui/widgets/microscope_config_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,583 copying fibsem/ui/widgets/milling_alignment_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,585 copying fibsem/ui/widgets/milling_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,588 copying fibsem/ui/widgets/milling_stage_editor_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,592 copying fibsem/ui/widgets/milling_stage_list_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,594 copying fibsem/ui/widgets/milling_stages_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,597 copying fibsem/ui/widgets/milling_task_acquisition_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,600 copying fibsem/ui/widgets/milling_task_config_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,603 copying fibsem/ui/widgets/milling_task_config_widget2.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,605 copying fibsem/ui/widgets/milling_task_viewer_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,608 copying fibsem/ui/widgets/milling_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,611 copying fibsem/ui/widgets/notifications.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,614 copying fibsem/ui/widgets/overview_acquisition_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,616 copying fibsem/ui/widgets/pattern_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,619 copying fibsem/ui/widgets/preferences_dialog.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,622 copying fibsem/ui/widgets/profile_line.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,624 copying fibsem/ui/widgets/progress_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,627 copying fibsem/ui/widgets/radial_menu.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,630 copying fibsem/ui/widgets/reference_image_parameters_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,632 copying fibsem/ui/widgets/sample_holder_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,635 copying fibsem/ui/widgets/strategy_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,637 copying fibsem/ui/widgets/task_history_table_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,640 copying fibsem/ui/widgets/workflow_config_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,643 copying fibsem/ui/widgets/workflow_info_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,645 copying fibsem/ui/widgets/workflow_task_editor_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,648 copying fibsem/ui/widgets/workflow_timeline_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,651 copying fibsem/ui/widgets/zoom_loupe.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:29:28,653 creating build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,654 copying fibsem/ui/widgets/tests/test-icon-tool-button.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,657 copying fibsem/ui/widgets/tests/test-image-settings-widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,659 copying fibsem/ui/widgets/tests/test-lamella-card.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,661 copying fibsem/ui/widgets/tests/test-lamella-list.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,664 copying fibsem/ui/widgets/tests/test-lamella-workflow.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,666 copying fibsem/ui/widgets/tests/test-progress-bar.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,668 copying fibsem/ui/widgets/tests/test-spinner-icon.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,671 copying fibsem/ui/widgets/tests/test-workflow-config.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,673 copying fibsem/ui/widgets/tests/test_alignment_comparison.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,676 copying fibsem/ui/widgets/tests/test_alignment_plot_v2.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,678 copying fibsem/ui/widgets/tests/test_countdown_progress.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,680 copying fibsem/ui/widgets/tests/test_drag_distance.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,683 copying fibsem/ui/widgets/tests/test_hooks_manual.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,685 copying fibsem/ui/widgets/tests/test_lamella_name_list_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,687 copying fibsem/ui/widgets/tests/test_lamella_task_image_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,690 copying fibsem/ui/widgets/tests/test_milling_settings_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,692 copying fibsem/ui/widgets/tests/test_milling_stage_list.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,694 copying fibsem/ui/widgets/tests/test_milling_stages_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,696 copying fibsem/ui/widgets/tests/test_milling_task_config_widget2.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,699 copying fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,702 copying fibsem/ui/widgets/tests/test_pattern_settings_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,704 copying fibsem/ui/widgets/tests/test_progress_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,707 copying fibsem/ui/widgets/tests/test_radial_menu.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,709 copying fibsem/ui/widgets/tests/test_radial_ruler_demo.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,712 copying fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,714 copying fibsem/ui/widgets/tests/test_toast.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,716 copying fibsem/ui/widgets/tests/test_workflow_timeline_animation.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:29:28,719 creating build/lib/fibsem/util 2026-05-01T01:29:28,720 copying fibsem/util/__init__.py -> build/lib/fibsem/util 2026-05-01T01:29:28,722 copying fibsem/util/draw_numbers.py -> build/lib/fibsem/util 2026-05-01T01:29:28,725 copying fibsem/util/filename.py -> build/lib/fibsem/util 2026-05-01T01:29:28,742 installing to build/bdist.linux-armv7l/wheel 2026-05-01T01:29:28,742 running install 2026-05-01T01:29:28,767 running install_lib 2026-05-01T01:29:28,774 creating build/bdist.linux-armv7l/wheel 2026-05-01T01:29:28,776 creating build/bdist.linux-armv7l/wheel/fibsem 2026-05-01T01:29:28,778 creating build/bdist.linux-armv7l/wheel/fibsem/ui 2026-05-01T01:29:28,779 copying build/lib/fibsem/ui/FibsemSpotBurnWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,782 copying build/lib/fibsem/ui/FibsemFeatureLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,784 copying build/lib/fibsem/ui/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,787 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,790 creating build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,791 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSpotBurnWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,794 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,796 copying build/lib/fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,798 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,800 copying build/lib/fibsem/ui/qtdesigner_files/image_viewer.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,802 copying build/lib/fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,805 copying build/lib/fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,807 copying build/lib/fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,810 copying build/lib/fibsem/ui/qtdesigner_files/FibsemUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,812 copying build/lib/fibsem/ui/qtdesigner_files/detection_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,815 copying build/lib/fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,817 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,819 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:29:28,822 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,824 copying build/lib/fibsem/ui/stylesheets.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,827 copying build/lib/fibsem/ui/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,829 copying build/lib/fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,832 creating build/bdist.linux-armv7l/wheel/fibsem/ui/icons 2026-05-01T01:29:28,833 copying build/lib/fibsem/ui/icons/drag_handle.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-05-01T01:29:28,835 copying build/lib/fibsem/ui/icons/plus.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-05-01T01:29:28,837 copying build/lib/fibsem/ui/icons/chevron_down.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-05-01T01:29:28,839 copying build/lib/fibsem/ui/icons/minus.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-05-01T01:29:28,841 copying build/lib/fibsem/ui/icons/check.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-05-01T01:29:28,842 copying build/lib/fibsem/ui/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,845 creating build/bdist.linux-armv7l/wheel/fibsem/ui/napari 2026-05-01T01:29:28,846 copying build/lib/fibsem/ui/napari/utilities.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-05-01T01:29:28,849 copying build/lib/fibsem/ui/napari/patterns.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-05-01T01:29:28,852 copying build/lib/fibsem/ui/napari/properties.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-05-01T01:29:28,853 copying build/lib/fibsem/ui/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,856 copying build/lib/fibsem/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,858 creating build/bdist.linux-armv7l/wheel/fibsem/ui/fm 2026-05-01T01:29:28,859 creating build/bdist.linux-armv7l/wheel/fibsem/ui/fm/widgets 2026-05-01T01:29:28,861 copying build/lib/fibsem/ui/fm/widgets/display_options_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-05-01T01:29:28,862 copying build/lib/fibsem/ui/fm/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-05-01T01:29:28,864 copying build/lib/fibsem/ui/fm/widgets/minimap_plot_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-05-01T01:29:28,867 copying build/lib/fibsem/ui/fm/widgets/minimap_plot_widget_example.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-05-01T01:29:28,869 copying build/lib/fibsem/ui/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,872 copying build/lib/fibsem/ui/FibsemUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:28,875 creating build/bdist.linux-armv7l/wheel/fibsem/ui/widgets 2026-05-01T01:29:28,876 copying build/lib/fibsem/ui/widgets/milling_task_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,879 copying build/lib/fibsem/ui/widgets/task_history_table_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,882 copying build/lib/fibsem/ui/widgets/milling_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,884 copying build/lib/fibsem/ui/widgets/lamella_card_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,887 copying build/lib/fibsem/ui/widgets/overview_acquisition_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,889 copying build/lib/fibsem/ui/widgets/autolamella_load_experiment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,892 copying build/lib/fibsem/ui/widgets/lamella_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,894 copying build/lib/fibsem/ui/widgets/milling_stages_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,897 copying build/lib/fibsem/ui/widgets/workflow_info_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,900 copying build/lib/fibsem/ui/widgets/preferences_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,902 copying build/lib/fibsem/ui/widgets/microscope_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,905 copying build/lib/fibsem/ui/widgets/pattern_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,908 copying build/lib/fibsem/ui/widgets/strategy_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,910 copying build/lib/fibsem/ui/widgets/autolamella_overview_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,913 copying build/lib/fibsem/ui/widgets/milling_task_acquisition_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,916 copying build/lib/fibsem/ui/widgets/milling_alignment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,918 copying build/lib/fibsem/ui/widgets/milling_stage_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,921 copying build/lib/fibsem/ui/widgets/sample_holder_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,924 copying build/lib/fibsem/ui/widgets/image_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,926 copying build/lib/fibsem/ui/widgets/autolamella_task_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,929 copying build/lib/fibsem/ui/widgets/fibsem_image_flow_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,932 copying build/lib/fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,935 copying build/lib/fibsem/ui/widgets/workflow_timeline_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,938 copying build/lib/fibsem/ui/widgets/custom_widgets.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,941 copying build/lib/fibsem/ui/widgets/autolamella_create_experiment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,944 copying build/lib/fibsem/ui/widgets/autolamella_generate_report_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,946 copying build/lib/fibsem/ui/widgets/detector_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,949 copying build/lib/fibsem/ui/widgets/image_annotation_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,952 copying build/lib/fibsem/ui/widgets/profile_line.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,954 copying build/lib/fibsem/ui/widgets/workflow_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,957 copying build/lib/fibsem/ui/widgets/dataframe_table_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,959 copying build/lib/fibsem/ui/widgets/milling_stage_editor_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,963 copying build/lib/fibsem/ui/widgets/hud_ticker.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,965 copying build/lib/fibsem/ui/widgets/hook_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,968 copying build/lib/fibsem/ui/widgets/beam_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,971 copying build/lib/fibsem/ui/widgets/annotation_pin.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,973 copying build/lib/fibsem/ui/widgets/autolamella_load_task_protocol_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,976 copying build/lib/fibsem/ui/widgets/angle_measure.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,978 copying build/lib/fibsem/ui/widgets/notifications.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,981 copying build/lib/fibsem/ui/widgets/milling_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,984 copying build/lib/fibsem/ui/widgets/autolamella_global_task_editor_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,986 copying build/lib/fibsem/ui/widgets/lamella_workflow_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,989 copying build/lib/fibsem/ui/widgets/beam_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,991 copying build/lib/fibsem/ui/widgets/autolamella_apply_protocol_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,994 copying build/lib/fibsem/ui/widgets/milling_task_config_widget2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,996 copying build/lib/fibsem/ui/widgets/zoom_loupe.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:28,999 copying build/lib/fibsem/ui/widgets/drag_distance.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,001 copying build/lib/fibsem/ui/widgets/autolamella_task_config_editor.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,004 copying build/lib/fibsem/ui/widgets/radial_menu.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,006 copying build/lib/fibsem/ui/widgets/reference_image_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,010 creating build/bdist.linux-armv7l/wheel/fibsem/ui/widgets/tests 2026-05-01T01:29:29,011 copying build/lib/fibsem/ui/widgets/tests/test-image-settings-widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,014 copying build/lib/fibsem/ui/widgets/tests/test-lamella-workflow.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,016 copying build/lib/fibsem/ui/widgets/tests/test_lamella_task_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,018 copying build/lib/fibsem/ui/widgets/tests/test_radial_menu.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,020 copying build/lib/fibsem/ui/widgets/tests/test_drag_distance.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,022 copying build/lib/fibsem/ui/widgets/tests/test_progress_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,025 copying build/lib/fibsem/ui/widgets/tests/test_hooks_manual.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,027 copying build/lib/fibsem/ui/widgets/tests/test-workflow-config.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,030 copying build/lib/fibsem/ui/widgets/tests/test_lamella_name_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,032 copying build/lib/fibsem/ui/widgets/tests/test-progress-bar.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,034 copying build/lib/fibsem/ui/widgets/tests/test-lamella-list.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,036 copying build/lib/fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,039 copying build/lib/fibsem/ui/widgets/tests/test_workflow_timeline_animation.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,041 copying build/lib/fibsem/ui/widgets/tests/test_toast.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,043 copying build/lib/fibsem/ui/widgets/tests/test_milling_stages_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,045 copying build/lib/fibsem/ui/widgets/tests/test_milling_task_config_widget2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,048 copying build/lib/fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,050 copying build/lib/fibsem/ui/widgets/tests/test_alignment_comparison.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,052 copying build/lib/fibsem/ui/widgets/tests/test_milling_stage_list.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,054 copying build/lib/fibsem/ui/widgets/tests/test_countdown_progress.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,057 copying build/lib/fibsem/ui/widgets/tests/test-lamella-card.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,059 copying build/lib/fibsem/ui/widgets/tests/test_radial_ruler_demo.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,062 copying build/lib/fibsem/ui/widgets/tests/test_alignment_plot_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,064 copying build/lib/fibsem/ui/widgets/tests/test-spinner-icon.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,066 copying build/lib/fibsem/ui/widgets/tests/test-icon-tool-button.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,068 copying build/lib/fibsem/ui/widgets/tests/test_milling_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,070 copying build/lib/fibsem/ui/widgets/tests/test_pattern_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:29:29,072 copying build/lib/fibsem/ui/widgets/autolamella_protocol_information_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,075 copying build/lib/fibsem/ui/widgets/lamella_task_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,077 copying build/lib/fibsem/ui/widgets/workflow_task_editor_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,080 copying build/lib/fibsem/ui/widgets/dual_beam_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,082 copying build/lib/fibsem/ui/widgets/progress_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,085 copying build/lib/fibsem/ui/widgets/autolamella_lamella_protocol_editor.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,088 copying build/lib/fibsem/ui/widgets/milling_task_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:29:29,091 copying build/lib/fibsem/ui/FibsemImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:29,094 copying build/lib/fibsem/ui/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:29,097 copying build/lib/fibsem/ui/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:29,101 copying build/lib/fibsem/ui/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:29,103 copying build/lib/fibsem/ui/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:29,105 copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:29,107 copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:29:29,110 creating build/bdist.linux-armv7l/wheel/fibsem/util 2026-05-01T01:29:29,112 copying build/lib/fibsem/util/draw_numbers.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-05-01T01:29:29,115 copying build/lib/fibsem/util/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-05-01T01:29:29,117 copying build/lib/fibsem/util/filename.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-05-01T01:29:29,119 copying build/lib/fibsem/config.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,122 creating build/bdist.linux-armv7l/wheel/fibsem/imaging 2026-05-01T01:29:29,123 copying build/lib/fibsem/imaging/tiled.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:29:29,127 copying build/lib/fibsem/imaging/masks.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:29:29,129 copying build/lib/fibsem/imaging/spot.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:29:29,131 copying build/lib/fibsem/imaging/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:29:29,133 copying build/lib/fibsem/imaging/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:29:29,135 copying build/lib/fibsem/imaging/drawing.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:29:29,138 copying build/lib/fibsem/imaging/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:29:29,140 creating build/bdist.linux-armv7l/wheel/fibsem/imaging/tests 2026-05-01T01:29:29,141 copying build/lib/fibsem/imaging/tests/test_drawing_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging/tests 2026-05-01T01:29:29,144 copying build/lib/fibsem/imaging/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging/tests 2026-05-01T01:29:29,145 copying build/lib/fibsem/imaging/autogamma.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:29:29,148 copying build/lib/fibsem/constants.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,150 copying build/lib/fibsem/transformations.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,153 creating build/bdist.linux-armv7l/wheel/fibsem/correlation 2026-05-01T01:29:29,154 copying build/lib/fibsem/correlation/io.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:29:29,157 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/ui 2026-05-01T01:29:29,159 copying build/lib/fibsem/correlation/ui/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui 2026-05-01T01:29:29,161 copying build/lib/fibsem/correlation/ui/pandas_table.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui 2026-05-01T01:29:29,163 copying build/lib/fibsem/correlation/ui/fm_import_wizard.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui 2026-05-01T01:29:29,166 copying build/lib/fibsem/correlation/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui 2026-05-01T01:29:29,169 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/ui/qt 2026-05-01T01:29:29,170 copying build/lib/fibsem/correlation/ui/qt/tdct_main.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/qt 2026-05-01T01:29:29,173 copying build/lib/fibsem/correlation/ui/qt/tdct_fm_import_wizard.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/qt 2026-05-01T01:29:29,175 copying build/lib/fibsem/correlation/app.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:29:29,180 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/pyto 2026-05-01T01:29:29,182 copying build/lib/fibsem/correlation/pyto/points.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:29:29,184 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/pyto/test 2026-05-01T01:29:29,186 copying build/lib/fibsem/correlation/pyto/test/test_rigid_3d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-05-01T01:29:29,190 copying build/lib/fibsem/correlation/pyto/test/test_affine_2d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-05-01T01:29:29,193 copying build/lib/fibsem/correlation/pyto/test/test_affine.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-05-01T01:29:29,195 copying build/lib/fibsem/correlation/pyto/affine_2d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:29:29,198 copying build/lib/fibsem/correlation/pyto/affine.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:29:29,201 copying build/lib/fibsem/correlation/pyto/common.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:29:29,204 copying build/lib/fibsem/correlation/pyto/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:29:29,206 copying build/lib/fibsem/correlation/pyto/attributes.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:29:29,209 copying build/lib/fibsem/correlation/pyto/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:29:29,211 copying build/lib/fibsem/correlation/pyto/rigid_3d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:29:29,214 copying build/lib/fibsem/correlation/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:29:29,216 copying build/lib/fibsem/correlation/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:29:29,218 copying build/lib/fibsem/correlation/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:29:29,221 copying build/lib/fibsem/correlation/correlation_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:29:29,223 copying build/lib/fibsem/movement.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,226 creating build/bdist.linux-armv7l/wheel/fibsem/server 2026-05-01T01:29:29,227 copying build/lib/fibsem/server/server.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:29:29,230 copying build/lib/fibsem/server/GAPS.md -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:29:29,232 copying build/lib/fibsem/server/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:29:29,234 copying build/lib/fibsem/server/client.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:29:29,236 copying build/lib/fibsem/server/models.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:29:29,238 copying build/lib/fibsem/server/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:29:29,241 creating build/bdist.linux-armv7l/wheel/fibsem/microscopes 2026-05-01T01:29:29,242 copying build/lib/fibsem/microscopes/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:29:29,244 copying build/lib/fibsem/microscopes/simulator.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:29:29,247 copying build/lib/fibsem/microscopes/zeiss.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:29:29,249 copying build/lib/fibsem/microscopes/tescan.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:29:29,252 copying build/lib/fibsem/microscopes/odemis_microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:29:29,255 copying build/lib/fibsem/microscopes/_stage.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:29:29,257 copying build/lib/fibsem/microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,262 copying build/lib/fibsem/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,264 copying build/lib/fibsem/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,268 copying build/lib/fibsem/logo.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,270 copying build/lib/fibsem/gis.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,272 copying build/lib/fibsem/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,274 copying build/lib/fibsem/alignment.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,278 creating build/bdist.linux-armv7l/wheel/fibsem/config 2026-05-01T01:29:29,279 copying build/lib/fibsem/config/tfs-hydra-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:29:29,281 copying build/lib/fibsem/config/sample-holder.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:29:29,283 copying build/lib/fibsem/config/odemis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:29:29,285 copying build/lib/fibsem/config/microscope-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:29:29,287 copying build/lib/fibsem/config/sim-arctis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:29:29,289 copying build/lib/fibsem/config/tescan-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:29:29,291 copying build/lib/fibsem/config/tfs-aquilos2-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:29:29,293 copying build/lib/fibsem/config/tescan_manipulator.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:29:29,295 copying build/lib/fibsem/config/tfs-arctis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:29:29,297 copying build/lib/fibsem/configuration.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,299 creating build/bdist.linux-armv7l/wheel/fibsem/applications 2026-05-01T01:29:29,300 copying build/lib/fibsem/applications/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications 2026-05-01T01:29:29,302 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella 2026-05-01T01:29:29,304 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/ui 2026-05-01T01:29:29,305 copying build/lib/fibsem/applications/autolamella/ui/run_ui.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-05-01T01:29:29,307 copying build/lib/fibsem/applications/autolamella/ui/AutoLamellaMainUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-05-01T01:29:29,310 copying build/lib/fibsem/applications/autolamella/ui/AutoLamellaUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-05-01T01:29:29,313 copying build/lib/fibsem/applications/autolamella/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-05-01T01:29:29,315 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/ui/tests 2026-05-01T01:29:29,316 copying build/lib/fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui/tests 2026-05-01T01:29:29,318 copying build/lib/fibsem/applications/autolamella/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-05-01T01:29:29,321 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows 2026-05-01T01:29:29,322 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:29:29,323 copying build/lib/fibsem/applications/autolamella/workflows/legacy/autoliftout.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:29:29,327 copying build/lib/fibsem/applications/autolamella/workflows/legacy/serial.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:29:29,329 copying build/lib/fibsem/applications/autolamella/workflows/legacy/experimental.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:29:29,332 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,333 copying build/lib/fibsem/applications/autolamella/workflows/tasks/rough.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,335 copying build/lib/fibsem/applications/autolamella/workflows/tasks/trench.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,338 copying build/lib/fibsem/applications/autolamella/workflows/tasks/spot_burn.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,340 copying build/lib/fibsem/applications/autolamella/workflows/tasks/hooks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,342 copying build/lib/fibsem/applications/autolamella/workflows/tasks/tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,344 copying build/lib/fibsem/applications/autolamella/workflows/tasks/test_hooks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,346 copying build/lib/fibsem/applications/autolamella/workflows/tasks/select_position.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,348 copying build/lib/fibsem/applications/autolamella/workflows/tasks/base.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,350 copying build/lib/fibsem/applications/autolamella/workflows/tasks/grid_tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,352 copying build/lib/fibsem/applications/autolamella/workflows/tasks/reference_image.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,354 copying build/lib/fibsem/applications/autolamella/workflows/tasks/undercut.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,356 copying build/lib/fibsem/applications/autolamella/workflows/tasks/queue.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,359 copying build/lib/fibsem/applications/autolamella/workflows/tasks/basic_milling.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,360 copying build/lib/fibsem/applications/autolamella/workflows/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,363 copying build/lib/fibsem/applications/autolamella/workflows/tasks/fiducial.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,365 copying build/lib/fibsem/applications/autolamella/workflows/tasks/manager.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,367 copying build/lib/fibsem/applications/autolamella/workflows/tasks/polishing.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:29:29,369 copying build/lib/fibsem/applications/autolamella/workflows/ui.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-05-01T01:29:29,371 copying build/lib/fibsem/applications/autolamella/workflows/core.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-05-01T01:29:29,374 copying build/lib/fibsem/applications/autolamella/workflows/_default_milling_config.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-05-01T01:29:29,376 copying build/lib/fibsem/applications/autolamella/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-05-01T01:29:29,378 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/protocol 2026-05-01T01:29:29,379 copying build/lib/fibsem/applications/autolamella/protocol/task-protocol.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:29:29,381 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:29,382 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:29,384 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:29,386 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:29,388 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:29,391 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:29:29,393 copying build/lib/fibsem/applications/autolamella/protocol/constants.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:29:29,395 copying build/lib/fibsem/applications/autolamella/protocol/legacy.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:29:29,397 copying build/lib/fibsem/applications/autolamella/protocol/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:29:29,399 copying build/lib/fibsem/applications/autolamella/protocol/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:29:29,400 copying build/lib/fibsem/applications/autolamella/protocol/validation.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:29:29,402 copying build/lib/fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:29:29,405 copying build/lib/fibsem/applications/autolamella/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-05-01T01:29:29,408 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/tools 2026-05-01T01:29:29,409 copying build/lib/fibsem/applications/autolamella/tools/upload_to_hf.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:29:29,411 copying build/lib/fibsem/applications/autolamella/tools/reporting.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:29:29,414 copying build/lib/fibsem/applications/autolamella/tools/review.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:29:29,416 copying build/lib/fibsem/applications/autolamella/tools/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:29:29,418 copying build/lib/fibsem/applications/autolamella/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:29:29,420 copying build/lib/fibsem/applications/autolamella/tools/stats.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:29:29,422 copying build/lib/fibsem/applications/autolamella/tools/data.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:29:29,425 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/compat 2026-05-01T01:29:29,426 copying build/lib/fibsem/applications/autolamella/compat/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/compat 2026-05-01T01:29:29,429 copying build/lib/fibsem/applications/autolamella/compat/odemis.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/compat 2026-05-01T01:29:29,431 copying build/lib/fibsem/applications/autolamella/task_manager_queue.md -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-05-01T01:29:29,434 creating build/bdist.linux-armv7l/wheel/fibsem/tools 2026-05-01T01:29:29,435 copying build/lib/fibsem/tools/run_split_dataset.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:29:29,438 copying build/lib/fibsem/tools/beam_shift_alignment_test.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:29:29,440 copying build/lib/fibsem/tools/telemetry.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:29:29,442 copying build/lib/fibsem/tools/_streamlit.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:29:29,444 copying build/lib/fibsem/tools/run_manipulator_calibration.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:29:29,445 copying build/lib/fibsem/tools/_parser.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:29:29,448 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation 2026-05-01T01:29:29,449 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,451 copying build/lib/fibsem/segmentation/sam_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,453 copying build/lib/fibsem/segmentation/test_image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,485 copying build/lib/fibsem/segmentation/config-autolamella-mega-v5.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,487 copying build/lib/fibsem/segmentation/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,489 copying build/lib/fibsem/segmentation/train.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,491 copying build/lib/fibsem/segmentation/augmentation.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,493 copying build/lib/fibsem/segmentation/nnunet_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,495 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/models 2026-05-01T01:29:29,496 copying build/lib/fibsem/segmentation/models/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/models 2026-05-01T01:29:29,498 copying build/lib/fibsem/segmentation/_nnunet.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,500 copying build/lib/fibsem/segmentation/dataset.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,503 copying build/lib/fibsem/segmentation/huggingface.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,505 copying build/lib/fibsem/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,506 copying build/lib/fibsem/segmentation/adaptive_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,508 copying build/lib/fibsem/segmentation/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,511 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,513 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs 2026-05-01T01:29:29,514 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs 2026-05-01T01:29:29,516 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled 2026-05-01T01:29:29,517 copying build/lib/fibsem/segmentation/docs/imgs/labelled/label.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/labelled 2026-05-01T01:29:29,542 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined 2026-05-01T01:29:29,543 copying build/lib/fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/combined 2026-05-01T01:29:29,573 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw 2026-05-01T01:29:29,574 copying build/lib/fibsem/segmentation/docs/imgs/raw/image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/raw 2026-05-01T01:29:29,599 copying build/lib/fibsem/segmentation/docs/example_napari.png -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs 2026-05-01T01:29:29,665 copying build/lib/fibsem/segmentation/nnunet_model_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,667 copying build/lib/fibsem/segmentation/inference.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,669 copying build/lib/fibsem/segmentation/hf_segmentation_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,671 copying build/lib/fibsem/segmentation/example.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,674 copying build/lib/fibsem/segmentation/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,676 copying build/lib/fibsem/segmentation/model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,678 copying build/lib/fibsem/segmentation/segmentation_config.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,680 copying build/lib/fibsem/segmentation/requirements.txt -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,682 copying build/lib/fibsem/segmentation/config.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,684 copying build/lib/fibsem/segmentation/config-autolamella-waffle4.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,685 copying build/lib/fibsem/segmentation/onnx_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:29:29,688 creating build/bdist.linux-armv7l/wheel/fibsem/milling 2026-05-01T01:29:29,689 copying build/lib/fibsem/milling/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:29:29,691 copying build/lib/fibsem/milling/tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:29:29,693 copying build/lib/fibsem/milling/base.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:29:29,695 copying build/lib/fibsem/milling/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:29:29,698 creating build/bdist.linux-armv7l/wheel/fibsem/milling/patterning 2026-05-01T01:29:29,699 copying build/lib/fibsem/milling/patterning/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-05-01T01:29:29,702 copying build/lib/fibsem/milling/patterning/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-05-01T01:29:29,704 copying build/lib/fibsem/milling/patterning/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-05-01T01:29:29,706 copying build/lib/fibsem/milling/patterning/patterns2.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-05-01T01:29:29,709 copying build/lib/fibsem/milling/properties.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:29:29,712 copying build/lib/fibsem/milling/core.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:29:29,715 creating build/bdist.linux-armv7l/wheel/fibsem/milling/strategy 2026-05-01T01:29:29,717 copying build/lib/fibsem/milling/strategy/overtilt.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-05-01T01:29:29,720 copying build/lib/fibsem/milling/strategy/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-05-01T01:29:29,723 copying build/lib/fibsem/milling/strategy/standard.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-05-01T01:29:29,726 copying build/lib/fibsem/calibration.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,729 copying build/lib/fibsem/validation.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,733 copying build/lib/fibsem/conversions.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,736 copying build/lib/fibsem/acquire.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:29:29,740 creating build/bdist.linux-armv7l/wheel/fibsem/detection 2026-05-01T01:29:29,742 copying build/lib/fibsem/detection/test_image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,784 copying build/lib/fibsem/detection/config-autoliftout-dm-embryo.yml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,787 copying build/lib/fibsem/detection/evaluation.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,790 copying build/lib/fibsem/detection/run_evaluation.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,793 copying build/lib/fibsem/detection/config-autolamella-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,795 copying build/lib/fibsem/detection/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,797 copying build/lib/fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,799 copying build/lib/fibsem/detection/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,802 copying build/lib/fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,804 copying build/lib/fibsem/detection/detection.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,809 copying build/lib/fibsem/detection/test_image_2.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,854 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2026-05-01T01:29:29,856 copying build/lib/fibsem/detection/test_images/test_needle_mask3.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-05-01T01:29:29,858 copying build/lib/fibsem/detection/test_images/test_needle_mask.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-05-01T01:29:29,861 copying build/lib/fibsem/detection/test_images/test_needle_mask2.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-05-01T01:29:29,864 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2026-05-01T01:29:29,865 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:29:29,868 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:29:29,871 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:29:29,874 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:29:29,876 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:29:29,879 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:29:29,882 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:29:29,885 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:29:29,887 copying build/lib/fibsem/detection/config-autolamella-waffle.yml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,889 copying build/lib/fibsem/detection/config-autolamella-waffle-v2.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,892 copying build/lib/fibsem/detection/config-autolamella-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,894 copying build/lib/fibsem/detection/config-autolamella-liftout-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:29:29,897 creating build/bdist.linux-armv7l/wheel/fibsem/chat 2026-05-01T01:29:29,898 copying build/lib/fibsem/chat/.gitignore -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-05-01T01:29:29,901 copying build/lib/fibsem/chat/main.py -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-05-01T01:29:29,903 copying build/lib/fibsem/chat/requirements.txt -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-05-01T01:29:29,905 running install_egg_info 2026-05-01T01:29:29,912 Copying fibsem.egg-info to build/bdist.linux-armv7l/wheel/./fibsem-0.5.0a0-py3.11.egg-info 2026-05-01T01:29:29,925 running install_scripts 2026-05-01T01:29:29,936 creating build/bdist.linux-armv7l/wheel/fibsem-0.5.0a0.dist-info/WHEEL 2026-05-01T01:29:29,940 creating '/tmp/pip-wheel-it1onyzx/.tmp-5bxryrq3/fibsem-0.5.0a0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-01T01:29:29,943 adding 'fibsem/__init__.py' 2026-05-01T01:29:29,945 adding 'fibsem/acquire.py' 2026-05-01T01:29:29,951 adding 'fibsem/alignment.py' 2026-05-01T01:29:29,954 adding 'fibsem/calibration.py' 2026-05-01T01:29:29,956 adding 'fibsem/config.py' 2026-05-01T01:29:29,958 adding 'fibsem/configuration.py' 2026-05-01T01:29:29,960 adding 'fibsem/constants.py' 2026-05-01T01:29:29,962 adding 'fibsem/conversions.py' 2026-05-01T01:29:29,964 adding 'fibsem/gis.py' 2026-05-01T01:29:29,965 adding 'fibsem/logo.py' 2026-05-01T01:29:29,983 adding 'fibsem/microscope.py' 2026-05-01T01:29:29,986 adding 'fibsem/movement.py' 2026-05-01T01:29:29,997 adding 'fibsem/structures.py' 2026-05-01T01:29:29,999 adding 'fibsem/transformations.py' 2026-05-01T01:29:30,002 adding 'fibsem/utils.py' 2026-05-01T01:29:30,005 adding 'fibsem/validation.py' 2026-05-01T01:29:30,007 adding 'fibsem/applications/__init__.py' 2026-05-01T01:29:30,009 adding 'fibsem/applications/autolamella/__init__.py' 2026-05-01T01:29:30,010 adding 'fibsem/applications/autolamella/config.py' 2026-05-01T01:29:30,017 adding 'fibsem/applications/autolamella/structures.py' 2026-05-01T01:29:30,020 adding 'fibsem/applications/autolamella/task_manager_queue.md' 2026-05-01T01:29:30,023 adding 'fibsem/applications/autolamella/compat/notebook.ipynb' 2026-05-01T01:29:30,025 adding 'fibsem/applications/autolamella/compat/odemis.py' 2026-05-01T01:29:30,027 adding 'fibsem/applications/autolamella/protocol/.gitkeep' 2026-05-01T01:29:30,028 adding 'fibsem/applications/autolamella/protocol/__init__.py' 2026-05-01T01:29:30,030 adding 'fibsem/applications/autolamella/protocol/constants.py' 2026-05-01T01:29:30,032 adding 'fibsem/applications/autolamella/protocol/legacy.py' 2026-05-01T01:29:30,034 adding 'fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml' 2026-05-01T01:29:30,036 adding 'fibsem/applications/autolamella/protocol/task-protocol.yaml' 2026-05-01T01:29:30,039 adding 'fibsem/applications/autolamella/protocol/validation.py' 2026-05-01T01:29:30,041 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml' 2026-05-01T01:29:30,043 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml' 2026-05-01T01:29:30,045 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml' 2026-05-01T01:29:30,047 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml' 2026-05-01T01:29:30,048 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml' 2026-05-01T01:29:30,050 adding 'fibsem/applications/autolamella/tools/__init__.py' 2026-05-01T01:29:30,054 adding 'fibsem/applications/autolamella/tools/data.py' 2026-05-01T01:29:30,056 adding 'fibsem/applications/autolamella/tools/notebook.ipynb' 2026-05-01T01:29:30,059 adding 'fibsem/applications/autolamella/tools/reporting.py' 2026-05-01T01:29:30,062 adding 'fibsem/applications/autolamella/tools/review.py' 2026-05-01T01:29:30,065 adding 'fibsem/applications/autolamella/tools/stats.py' 2026-05-01T01:29:30,067 adding 'fibsem/applications/autolamella/tools/upload_to_hf.py' 2026-05-01T01:29:30,074 adding 'fibsem/applications/autolamella/ui/AutoLamellaMainUI.py' 2026-05-01T01:29:30,084 adding 'fibsem/applications/autolamella/ui/AutoLamellaUI.py' 2026-05-01T01:29:30,086 adding 'fibsem/applications/autolamella/ui/__init__.py' 2026-05-01T01:29:30,087 adding 'fibsem/applications/autolamella/ui/run_ui.py' 2026-05-01T01:29:30,090 adding 'fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py' 2026-05-01T01:29:30,092 adding 'fibsem/applications/autolamella/workflows/_default_milling_config.py' 2026-05-01T01:29:30,094 adding 'fibsem/applications/autolamella/workflows/core.py' 2026-05-01T01:29:30,096 adding 'fibsem/applications/autolamella/workflows/ui.py' 2026-05-01T01:29:30,102 adding 'fibsem/applications/autolamella/workflows/legacy/autoliftout.py' 2026-05-01T01:29:30,105 adding 'fibsem/applications/autolamella/workflows/legacy/experimental.py' 2026-05-01T01:29:30,109 adding 'fibsem/applications/autolamella/workflows/legacy/serial.py' 2026-05-01T01:29:30,112 adding 'fibsem/applications/autolamella/workflows/tasks/__init__.py' 2026-05-01T01:29:30,115 adding 'fibsem/applications/autolamella/workflows/tasks/base.py' 2026-05-01T01:29:30,117 adding 'fibsem/applications/autolamella/workflows/tasks/basic_milling.py' 2026-05-01T01:29:30,118 adding 'fibsem/applications/autolamella/workflows/tasks/fiducial.py' 2026-05-01T01:29:30,121 adding 'fibsem/applications/autolamella/workflows/tasks/grid_tasks.py' 2026-05-01T01:29:30,123 adding 'fibsem/applications/autolamella/workflows/tasks/hooks.py' 2026-05-01T01:29:30,125 adding 'fibsem/applications/autolamella/workflows/tasks/manager.py' 2026-05-01T01:29:30,127 adding 'fibsem/applications/autolamella/workflows/tasks/polishing.py' 2026-05-01T01:29:30,128 adding 'fibsem/applications/autolamella/workflows/tasks/queue.py' 2026-05-01T01:29:30,130 adding 'fibsem/applications/autolamella/workflows/tasks/reference_image.py' 2026-05-01T01:29:30,132 adding 'fibsem/applications/autolamella/workflows/tasks/rough.py' 2026-05-01T01:29:30,134 adding 'fibsem/applications/autolamella/workflows/tasks/select_position.py' 2026-05-01T01:29:30,135 adding 'fibsem/applications/autolamella/workflows/tasks/spot_burn.py' 2026-05-01T01:29:30,137 adding 'fibsem/applications/autolamella/workflows/tasks/tasks.py' 2026-05-01T01:29:30,139 adding 'fibsem/applications/autolamella/workflows/tasks/test_hooks.py' 2026-05-01T01:29:30,141 adding 'fibsem/applications/autolamella/workflows/tasks/trench.py' 2026-05-01T01:29:30,143 adding 'fibsem/applications/autolamella/workflows/tasks/undercut.py' 2026-05-01T01:29:30,145 adding 'fibsem/chat/.gitignore' 2026-05-01T01:29:30,146 adding 'fibsem/chat/main.py' 2026-05-01T01:29:30,148 adding 'fibsem/chat/requirements.txt' 2026-05-01T01:29:30,150 adding 'fibsem/config/microscope-configuration.yaml' 2026-05-01T01:29:30,152 adding 'fibsem/config/odemis-configuration.yaml' 2026-05-01T01:29:30,153 adding 'fibsem/config/sample-holder.yaml' 2026-05-01T01:29:30,155 adding 'fibsem/config/sim-arctis-configuration.yaml' 2026-05-01T01:29:30,157 adding 'fibsem/config/tescan-configuration.yaml' 2026-05-01T01:29:30,158 adding 'fibsem/config/tescan_manipulator.yaml' 2026-05-01T01:29:30,160 adding 'fibsem/config/tfs-aquilos2-configuration.yaml' 2026-05-01T01:29:30,162 adding 'fibsem/config/tfs-arctis-configuration.yaml' 2026-05-01T01:29:30,164 adding 'fibsem/config/tfs-hydra-configuration.yaml' 2026-05-01T01:29:30,166 adding 'fibsem/correlation/README.md' 2026-05-01T01:29:30,167 adding 'fibsem/correlation/__init__.py' 2026-05-01T01:29:30,174 adding 'fibsem/correlation/app.py' 2026-05-01T01:29:30,177 adding 'fibsem/correlation/correlation_v2.py' 2026-05-01T01:29:30,179 adding 'fibsem/correlation/io.py' 2026-05-01T01:29:30,183 adding 'fibsem/correlation/util.py' 2026-05-01T01:29:30,185 adding 'fibsem/correlation/pyto/__init__.py' 2026-05-01T01:29:30,189 adding 'fibsem/correlation/pyto/affine.py' 2026-05-01T01:29:30,193 adding 'fibsem/correlation/pyto/affine_2d.py' 2026-05-01T01:29:30,195 adding 'fibsem/correlation/pyto/attributes.py' 2026-05-01T01:29:30,197 adding 'fibsem/correlation/pyto/common.py' 2026-05-01T01:29:30,199 adding 'fibsem/correlation/pyto/points.py' 2026-05-01T01:29:30,205 adding 'fibsem/correlation/pyto/rigid_3d.py' 2026-05-01T01:29:30,207 adding 'fibsem/correlation/pyto/util.py' 2026-05-01T01:29:30,210 adding 'fibsem/correlation/pyto/test/test_affine.py' 2026-05-01T01:29:30,212 adding 'fibsem/correlation/pyto/test/test_affine_2d.py' 2026-05-01T01:29:30,217 adding 'fibsem/correlation/pyto/test/test_rigid_3d.py' 2026-05-01T01:29:30,219 adding 'fibsem/correlation/ui/__init__.py' 2026-05-01T01:29:30,221 adding 'fibsem/correlation/ui/config.py' 2026-05-01T01:29:30,223 adding 'fibsem/correlation/ui/fm_import_wizard.py' 2026-05-01T01:29:30,225 adding 'fibsem/correlation/ui/pandas_table.py' 2026-05-01T01:29:30,227 adding 'fibsem/correlation/ui/qt/tdct_fm_import_wizard.py' 2026-05-01T01:29:30,230 adding 'fibsem/correlation/ui/qt/tdct_main.py' 2026-05-01T01:29:30,232 adding 'fibsem/detection/__init__.py' 2026-05-01T01:29:30,233 adding 'fibsem/detection/config-autolamella-liftout-hf-mega.yaml' 2026-05-01T01:29:30,235 adding 'fibsem/detection/config-autolamella-liftout.yaml' 2026-05-01T01:29:30,236 adding 'fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml' 2026-05-01T01:29:30,237 adding 'fibsem/detection/config-autolamella-serial-liftout.yaml' 2026-05-01T01:29:30,239 adding 'fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml' 2026-05-01T01:29:30,240 adding 'fibsem/detection/config-autolamella-waffle-v2.yaml' 2026-05-01T01:29:30,242 adding 'fibsem/detection/config-autolamella-waffle.yml' 2026-05-01T01:29:30,243 adding 'fibsem/detection/config-autoliftout-dm-embryo.yml' 2026-05-01T01:29:30,252 adding 'fibsem/detection/detection.py' 2026-05-01T01:29:30,254 adding 'fibsem/detection/evaluation.py' 2026-05-01T01:29:30,256 adding 'fibsem/detection/run_evaluation.py' 2026-05-01T01:29:30,688 adding 'fibsem/detection/test_image.tif' 2026-05-01T01:29:30,990 adding 'fibsem/detection/test_image_2.tif' 2026-05-01T01:29:31,002 adding 'fibsem/detection/utils.py' 2026-05-01T01:29:31,005 adding 'fibsem/detection/test_images/test_needle_mask.tif' 2026-05-01T01:29:31,007 adding 'fibsem/detection/test_images/test_needle_mask2.tif' 2026-05-01T01:29:31,009 adding 'fibsem/detection/test_images/test_needle_mask3.tif' 2026-05-01T01:29:31,012 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_00.tif' 2026-05-01T01:29:31,016 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_01.tif' 2026-05-01T01:29:31,018 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_02.tif' 2026-05-01T01:29:31,021 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_03.tif' 2026-05-01T01:29:31,024 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_04.tif' 2026-05-01T01:29:31,026 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_05.tif' 2026-05-01T01:29:31,029 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_06.tif' 2026-05-01T01:29:31,032 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_07.tif' 2026-05-01T01:29:31,034 adding 'fibsem/imaging/.gitkeep' 2026-05-01T01:29:31,035 adding 'fibsem/imaging/__init__.py' 2026-05-01T01:29:31,037 adding 'fibsem/imaging/autogamma.py' 2026-05-01T01:29:31,039 adding 'fibsem/imaging/drawing.py' 2026-05-01T01:29:31,041 adding 'fibsem/imaging/masks.py' 2026-05-01T01:29:31,043 adding 'fibsem/imaging/spot.py' 2026-05-01T01:29:31,048 adding 'fibsem/imaging/tiled.py' 2026-05-01T01:29:31,050 adding 'fibsem/imaging/utils.py' 2026-05-01T01:29:31,051 adding 'fibsem/imaging/tests/__init__.py' 2026-05-01T01:29:31,053 adding 'fibsem/imaging/tests/test_drawing_widget.py' 2026-05-01T01:29:31,055 adding 'fibsem/microscopes/_stage.py' 2026-05-01T01:29:31,057 adding 'fibsem/microscopes/notebook.ipynb' 2026-05-01T01:29:31,062 adding 'fibsem/microscopes/odemis_microscope.py' 2026-05-01T01:29:31,067 adding 'fibsem/microscopes/simulator.py' 2026-05-01T01:29:31,076 adding 'fibsem/microscopes/tescan.py' 2026-05-01T01:29:31,078 adding 'fibsem/microscopes/zeiss.py' 2026-05-01T01:29:31,080 adding 'fibsem/milling/__init__.py' 2026-05-01T01:29:31,082 adding 'fibsem/milling/base.py' 2026-05-01T01:29:31,084 adding 'fibsem/milling/config.py' 2026-05-01T01:29:31,085 adding 'fibsem/milling/core.py' 2026-05-01T01:29:31,087 adding 'fibsem/milling/properties.py' 2026-05-01T01:29:31,090 adding 'fibsem/milling/tasks.py' 2026-05-01T01:29:31,092 adding 'fibsem/milling/patterning/__init__.py' 2026-05-01T01:29:31,097 adding 'fibsem/milling/patterning/patterns2.py' 2026-05-01T01:29:31,102 adding 'fibsem/milling/patterning/plotting.py' 2026-05-01T01:29:31,104 adding 'fibsem/milling/patterning/utils.py' 2026-05-01T01:29:31,107 adding 'fibsem/milling/strategy/__init__.py' 2026-05-01T01:29:31,109 adding 'fibsem/milling/strategy/overtilt.py' 2026-05-01T01:29:31,110 adding 'fibsem/milling/strategy/standard.py' 2026-05-01T01:29:31,113 adding 'fibsem/segmentation/README.md' 2026-05-01T01:29:31,114 adding 'fibsem/segmentation/__init__.py' 2026-05-01T01:29:31,117 adding 'fibsem/segmentation/_nnunet.py' 2026-05-01T01:29:31,119 adding 'fibsem/segmentation/adaptive_model.py' 2026-05-01T01:29:31,120 adding 'fibsem/segmentation/augmentation.ipynb' 2026-05-01T01:29:31,122 adding 'fibsem/segmentation/config-autolamella-mega-v4-xl.yml' 2026-05-01T01:29:31,123 adding 'fibsem/segmentation/config-autolamella-mega-v4.yml' 2026-05-01T01:29:31,125 adding 'fibsem/segmentation/config-autolamella-mega-v5.yml' 2026-05-01T01:29:31,126 adding 'fibsem/segmentation/config-autolamella-waffle4.yml' 2026-05-01T01:29:31,127 adding 'fibsem/segmentation/config.py' 2026-05-01T01:29:31,129 adding 'fibsem/segmentation/config.yml' 2026-05-01T01:29:31,131 adding 'fibsem/segmentation/dataset.py' 2026-05-01T01:29:31,142 adding 'fibsem/segmentation/example.ipynb' 2026-05-01T01:29:31,145 adding 'fibsem/segmentation/hf_segmentation_model.py' 2026-05-01T01:29:31,148 adding 'fibsem/segmentation/huggingface.ipynb' 2026-05-01T01:29:31,150 adding 'fibsem/segmentation/inference.py' 2026-05-01T01:29:31,152 adding 'fibsem/segmentation/model.py' 2026-05-01T01:29:31,154 adding 'fibsem/segmentation/nnunet_model.py' 2026-05-01T01:29:31,155 adding 'fibsem/segmentation/nnunet_model_v2.py' 2026-05-01T01:29:31,158 adding 'fibsem/segmentation/onnx_model.py' 2026-05-01T01:29:31,159 adding 'fibsem/segmentation/requirements.txt' 2026-05-01T01:29:31,161 adding 'fibsem/segmentation/sam_model.py' 2026-05-01T01:29:31,162 adding 'fibsem/segmentation/segmentation_config.yaml' 2026-05-01T01:29:31,313 adding 'fibsem/segmentation/test_image.tif' 2026-05-01T01:29:31,324 adding 'fibsem/segmentation/train.py' 2026-05-01T01:29:31,327 adding 'fibsem/segmentation/utils.py' 2026-05-01T01:29:31,686 adding 'fibsem/segmentation/docs/example_napari.png' 2026-05-01T01:29:31,847 adding 'fibsem/segmentation/docs/imgs/combined/combined.jpg' 2026-05-01T01:29:31,899 adding 'fibsem/segmentation/docs/imgs/labelled/label.tif' 2026-05-01T01:29:32,062 adding 'fibsem/segmentation/docs/imgs/raw/image.tif' 2026-05-01T01:29:32,073 adding 'fibsem/segmentation/models/.gitkeep' 2026-05-01T01:29:32,075 adding 'fibsem/server/GAPS.md' 2026-05-01T01:29:32,077 adding 'fibsem/server/README.md' 2026-05-01T01:29:32,078 adding 'fibsem/server/__init__.py' 2026-05-01T01:29:32,080 adding 'fibsem/server/client.py' 2026-05-01T01:29:32,082 adding 'fibsem/server/models.py' 2026-05-01T01:29:32,085 adding 'fibsem/server/server.py' 2026-05-01T01:29:32,087 adding 'fibsem/tools/_parser.py' 2026-05-01T01:29:32,088 adding 'fibsem/tools/_streamlit.py' 2026-05-01T01:29:32,090 adding 'fibsem/tools/beam_shift_alignment_test.py' 2026-05-01T01:29:32,091 adding 'fibsem/tools/run_manipulator_calibration.py' 2026-05-01T01:29:32,093 adding 'fibsem/tools/run_split_dataset.py' 2026-05-01T01:29:32,095 adding 'fibsem/tools/telemetry.py' 2026-05-01T01:29:32,097 adding 'fibsem/ui/.gitkeep' 2026-05-01T01:29:32,099 adding 'fibsem/ui/FibsemCryoDepositionWidget.py' 2026-05-01T01:29:32,100 adding 'fibsem/ui/FibsemCryoDepositionWidget_qt.py' 2026-05-01T01:29:32,103 adding 'fibsem/ui/FibsemEmbeddedDetectionWidget.py' 2026-05-01T01:29:32,105 adding 'fibsem/ui/FibsemFeatureLabellingUI.py' 2026-05-01T01:29:32,110 adding 'fibsem/ui/FibsemImageSettingsWidget.py' 2026-05-01T01:29:32,113 adding 'fibsem/ui/FibsemLabellingUI.py' 2026-05-01T01:29:32,116 adding 'fibsem/ui/FibsemManipulatorWidget.py' 2026-05-01T01:29:32,118 adding 'fibsem/ui/FibsemMicroscopeConfigurationWidget.py' 2026-05-01T01:29:32,120 adding 'fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py' 2026-05-01T01:29:32,128 adding 'fibsem/ui/FibsemMinimapWidget.py' 2026-05-01T01:29:32,130 adding 'fibsem/ui/FibsemModelTrainingWidget.py' 2026-05-01T01:29:32,133 adding 'fibsem/ui/FibsemMovementWidget.py' 2026-05-01T01:29:32,135 adding 'fibsem/ui/FibsemSegmentationModelWidget.py' 2026-05-01T01:29:32,136 adding 'fibsem/ui/FibsemSpotBurnWidget.py' 2026-05-01T01:29:32,138 adding 'fibsem/ui/FibsemSystemSetupWidget.py' 2026-05-01T01:29:32,140 adding 'fibsem/ui/FibsemUI.py' 2026-05-01T01:29:32,141 adding 'fibsem/ui/__init__.py' 2026-05-01T01:29:32,142 adding 'fibsem/ui/stylesheets.py' 2026-05-01T01:29:32,144 adding 'fibsem/ui/utils.py' 2026-05-01T01:29:32,146 adding 'fibsem/ui/fm/widgets/__init__.py' 2026-05-01T01:29:32,148 adding 'fibsem/ui/fm/widgets/display_options_dialog.py' 2026-05-01T01:29:32,152 adding 'fibsem/ui/fm/widgets/minimap_plot_widget.py' 2026-05-01T01:29:32,154 adding 'fibsem/ui/fm/widgets/minimap_plot_widget_example.py' 2026-05-01T01:29:32,156 adding 'fibsem/ui/icons/check.svg' 2026-05-01T01:29:32,157 adding 'fibsem/ui/icons/chevron_down.svg' 2026-05-01T01:29:32,158 adding 'fibsem/ui/icons/drag_handle.svg' 2026-05-01T01:29:32,159 adding 'fibsem/ui/icons/minus.svg' 2026-05-01T01:29:32,160 adding 'fibsem/ui/icons/plus.svg' 2026-05-01T01:29:32,164 adding 'fibsem/ui/napari/patterns.py' 2026-05-01T01:29:32,166 adding 'fibsem/ui/napari/properties.py' 2026-05-01T01:29:32,168 adding 'fibsem/ui/napari/utilities.py' 2026-05-01T01:29:32,170 adding 'fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py' 2026-05-01T01:29:32,172 adding 'fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py' 2026-05-01T01:29:32,173 adding 'fibsem/ui/qtdesigner_files/FibsemLabellingUI.py' 2026-05-01T01:29:32,175 adding 'fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py' 2026-05-01T01:29:32,176 adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py' 2026-05-01T01:29:32,180 adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py' 2026-05-01T01:29:32,181 adding 'fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py' 2026-05-01T01:29:32,183 adding 'fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py' 2026-05-01T01:29:32,184 adding 'fibsem/ui/qtdesigner_files/FibsemSpotBurnWidget.py' 2026-05-01T01:29:32,185 adding 'fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py' 2026-05-01T01:29:32,187 adding 'fibsem/ui/qtdesigner_files/FibsemUI.py' 2026-05-01T01:29:32,188 adding 'fibsem/ui/qtdesigner_files/detection_dialog.py' 2026-05-01T01:29:32,191 adding 'fibsem/ui/qtdesigner_files/image_viewer.py' 2026-05-01T01:29:32,194 adding 'fibsem/ui/widgets/angle_measure.py' 2026-05-01T01:29:32,195 adding 'fibsem/ui/widgets/annotation_pin.py' 2026-05-01T01:29:32,197 adding 'fibsem/ui/widgets/autolamella_apply_protocol_dialog.py' 2026-05-01T01:29:32,200 adding 'fibsem/ui/widgets/autolamella_create_experiment_widget.py' 2026-05-01T01:29:32,202 adding 'fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py' 2026-05-01T01:29:32,205 adding 'fibsem/ui/widgets/autolamella_generate_report_widget.py' 2026-05-01T01:29:32,207 adding 'fibsem/ui/widgets/autolamella_global_task_editor_dialog.py' 2026-05-01T01:29:32,212 adding 'fibsem/ui/widgets/autolamella_lamella_protocol_editor.py' 2026-05-01T01:29:32,214 adding 'fibsem/ui/widgets/autolamella_load_experiment_widget.py' 2026-05-01T01:29:32,217 adding 'fibsem/ui/widgets/autolamella_load_task_protocol_widget.py' 2026-05-01T01:29:32,220 adding 'fibsem/ui/widgets/autolamella_overview_image_widget.py' 2026-05-01T01:29:32,221 adding 'fibsem/ui/widgets/autolamella_protocol_information_widget.py' 2026-05-01T01:29:32,224 adding 'fibsem/ui/widgets/autolamella_task_config_editor.py' 2026-05-01T01:29:32,227 adding 'fibsem/ui/widgets/autolamella_task_config_widget.py' 2026-05-01T01:29:32,229 adding 'fibsem/ui/widgets/beam_settings_widget.py' 2026-05-01T01:29:32,231 adding 'fibsem/ui/widgets/beam_widget.py' 2026-05-01T01:29:32,235 adding 'fibsem/ui/widgets/custom_widgets.py' 2026-05-01T01:29:32,237 adding 'fibsem/ui/widgets/dataframe_table_widget.py' 2026-05-01T01:29:32,239 adding 'fibsem/ui/widgets/detector_settings_widget.py' 2026-05-01T01:29:32,241 adding 'fibsem/ui/widgets/drag_distance.py' 2026-05-01T01:29:32,243 adding 'fibsem/ui/widgets/dual_beam_widget.py' 2026-05-01T01:29:32,244 adding 'fibsem/ui/widgets/fibsem_image_flow_widget.py' 2026-05-01T01:29:32,247 adding 'fibsem/ui/widgets/hook_config_widget.py' 2026-05-01T01:29:32,248 adding 'fibsem/ui/widgets/hud_ticker.py' 2026-05-01T01:29:32,251 adding 'fibsem/ui/widgets/image_annotation_widget.py' 2026-05-01T01:29:32,253 adding 'fibsem/ui/widgets/image_settings_widget.py' 2026-05-01T01:29:32,255 adding 'fibsem/ui/widgets/lamella_card_widget.py' 2026-05-01T01:29:32,257 adding 'fibsem/ui/widgets/lamella_list_widget.py' 2026-05-01T01:29:32,260 adding 'fibsem/ui/widgets/lamella_task_image_widget.py' 2026-05-01T01:29:32,262 adding 'fibsem/ui/widgets/lamella_workflow_widget.py' 2026-05-01T01:29:32,264 adding 'fibsem/ui/widgets/microscope_config_widget.py' 2026-05-01T01:29:32,266 adding 'fibsem/ui/widgets/milling_alignment_widget.py' 2026-05-01T01:29:32,267 adding 'fibsem/ui/widgets/milling_settings_widget.py' 2026-05-01T01:29:32,273 adding 'fibsem/ui/widgets/milling_stage_editor_widget.py' 2026-05-01T01:29:32,276 adding 'fibsem/ui/widgets/milling_stage_list_widget.py' 2026-05-01T01:29:32,279 adding 'fibsem/ui/widgets/milling_stages_widget.py' 2026-05-01T01:29:32,280 adding 'fibsem/ui/widgets/milling_task_acquisition_settings_widget.py' 2026-05-01T01:29:32,283 adding 'fibsem/ui/widgets/milling_task_config_widget.py' 2026-05-01T01:29:32,285 adding 'fibsem/ui/widgets/milling_task_config_widget2.py' 2026-05-01T01:29:32,287 adding 'fibsem/ui/widgets/milling_task_viewer_widget.py' 2026-05-01T01:29:32,289 adding 'fibsem/ui/widgets/milling_widget.py' 2026-05-01T01:29:32,291 adding 'fibsem/ui/widgets/notifications.py' 2026-05-01T01:29:32,293 adding 'fibsem/ui/widgets/overview_acquisition_settings_widget.py' 2026-05-01T01:29:32,295 adding 'fibsem/ui/widgets/pattern_settings_widget.py' 2026-05-01T01:29:32,296 adding 'fibsem/ui/widgets/preferences_dialog.py' 2026-05-01T01:29:32,298 adding 'fibsem/ui/widgets/profile_line.py' 2026-05-01T01:29:32,299 adding 'fibsem/ui/widgets/progress_widget.py' 2026-05-01T01:29:32,301 adding 'fibsem/ui/widgets/radial_menu.py' 2026-05-01T01:29:32,303 adding 'fibsem/ui/widgets/reference_image_parameters_widget.py' 2026-05-01T01:29:32,306 adding 'fibsem/ui/widgets/sample_holder_widget.py' 2026-05-01T01:29:32,307 adding 'fibsem/ui/widgets/strategy_settings_widget.py' 2026-05-01T01:29:32,309 adding 'fibsem/ui/widgets/task_history_table_widget.py' 2026-05-01T01:29:32,311 adding 'fibsem/ui/widgets/workflow_config_widget.py' 2026-05-01T01:29:32,313 adding 'fibsem/ui/widgets/workflow_info_widget.py' 2026-05-01T01:29:32,315 adding 'fibsem/ui/widgets/workflow_task_editor_widget.py' 2026-05-01T01:29:32,318 adding 'fibsem/ui/widgets/workflow_timeline_widget.py' 2026-05-01T01:29:32,319 adding 'fibsem/ui/widgets/zoom_loupe.py' 2026-05-01T01:29:32,322 adding 'fibsem/ui/widgets/tests/test-icon-tool-button.py' 2026-05-01T01:29:32,323 adding 'fibsem/ui/widgets/tests/test-image-settings-widget.py' 2026-05-01T01:29:32,325 adding 'fibsem/ui/widgets/tests/test-lamella-card.py' 2026-05-01T01:29:32,326 adding 'fibsem/ui/widgets/tests/test-lamella-list.py' 2026-05-01T01:29:32,328 adding 'fibsem/ui/widgets/tests/test-lamella-workflow.py' 2026-05-01T01:29:32,329 adding 'fibsem/ui/widgets/tests/test-progress-bar.py' 2026-05-01T01:29:32,331 adding 'fibsem/ui/widgets/tests/test-spinner-icon.py' 2026-05-01T01:29:32,332 adding 'fibsem/ui/widgets/tests/test-workflow-config.py' 2026-05-01T01:29:32,334 adding 'fibsem/ui/widgets/tests/test_alignment_comparison.py' 2026-05-01T01:29:32,335 adding 'fibsem/ui/widgets/tests/test_alignment_plot_v2.py' 2026-05-01T01:29:32,337 adding 'fibsem/ui/widgets/tests/test_countdown_progress.py' 2026-05-01T01:29:32,338 adding 'fibsem/ui/widgets/tests/test_drag_distance.py' 2026-05-01T01:29:32,339 adding 'fibsem/ui/widgets/tests/test_hooks_manual.py' 2026-05-01T01:29:32,341 adding 'fibsem/ui/widgets/tests/test_lamella_name_list_widget.py' 2026-05-01T01:29:32,342 adding 'fibsem/ui/widgets/tests/test_lamella_task_image_widget.py' 2026-05-01T01:29:32,343 adding 'fibsem/ui/widgets/tests/test_milling_settings_widget.py' 2026-05-01T01:29:32,344 adding 'fibsem/ui/widgets/tests/test_milling_stage_list.py' 2026-05-01T01:29:32,345 adding 'fibsem/ui/widgets/tests/test_milling_stages_widget.py' 2026-05-01T01:29:32,347 adding 'fibsem/ui/widgets/tests/test_milling_task_config_widget2.py' 2026-05-01T01:29:32,349 adding 'fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py' 2026-05-01T01:29:32,350 adding 'fibsem/ui/widgets/tests/test_pattern_settings_widget.py' 2026-05-01T01:29:32,351 adding 'fibsem/ui/widgets/tests/test_progress_widget.py' 2026-05-01T01:29:32,353 adding 'fibsem/ui/widgets/tests/test_radial_menu.py' 2026-05-01T01:29:32,355 adding 'fibsem/ui/widgets/tests/test_radial_ruler_demo.py' 2026-05-01T01:29:32,356 adding 'fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py' 2026-05-01T01:29:32,357 adding 'fibsem/ui/widgets/tests/test_toast.py' 2026-05-01T01:29:32,359 adding 'fibsem/ui/widgets/tests/test_workflow_timeline_animation.py' 2026-05-01T01:29:32,360 adding 'fibsem/util/__init__.py' 2026-05-01T01:29:32,363 adding 'fibsem/util/draw_numbers.py' 2026-05-01T01:29:32,364 adding 'fibsem/util/filename.py' 2026-05-01T01:29:32,366 adding 'fibsem-0.5.0a0.dist-info/licenses/LICENSE' 2026-05-01T01:29:32,368 adding 'fibsem-0.5.0a0.dist-info/METADATA' 2026-05-01T01:29:32,369 adding 'fibsem-0.5.0a0.dist-info/WHEEL' 2026-05-01T01:29:32,370 adding 'fibsem-0.5.0a0.dist-info/entry_points.txt' 2026-05-01T01:29:32,371 adding 'fibsem-0.5.0a0.dist-info/top_level.txt' 2026-05-01T01:29:32,376 adding 'fibsem-0.5.0a0.dist-info/RECORD' 2026-05-01T01:29:32,489 removing build/bdist.linux-armv7l/wheel 2026-05-01T01:29:32,696 Building wheel for fibsem (pyproject.toml): finished with status 'done' 2026-05-01T01:29:32,930 Created wheel for fibsem: filename=fibsem-0.5.0a0-py3-none-any.whl size=10288554 sha256=8f78e1d1482c67775abcba3f0c698dc068a0fc178b3300a51b9b677427dc81b0 2026-05-01T01:29:32,931 Stored in directory: /tmp/pip-ephem-wheel-cache-_k6g_w5g/wheels/e6/c9/09/3617bf047074b20f4f74a412def7684ed25164f948eec60746 2026-05-01T01:29:32,957 Successfully built fibsem 2026-05-01T01:29:33,206 Removed build tracker: '/tmp/pip-build-tracker-007cnmow'