2026-05-01T01:37:05,241 Created temporary directory: /tmp/pip-ephem-wheel-cache-6_k2aras 2026-05-01T01:37:05,243 Created temporary directory: /tmp/pip-build-tracker-wx0tssy6 2026-05-01T01:37:05,243 Initialized build tracking at /tmp/pip-build-tracker-wx0tssy6 2026-05-01T01:37:05,244 Created build tracker: /tmp/pip-build-tracker-wx0tssy6 2026-05-01T01:37:05,244 Entered build tracker: /tmp/pip-build-tracker-wx0tssy6 2026-05-01T01:37:05,245 Created temporary directory: /tmp/pip-wheel-9pzkt4jb 2026-05-01T01:37:05,248 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-01T01:37:05,250 Created temporary directory: /tmp/pip-ephem-wheel-cache-1unqm54k 2026-05-01T01:37:05,271 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-01T01:37:05,275 2 location(s) to search for versions of fibsem: 2026-05-01T01:37:05,275 * https://pypi.org/simple/fibsem/ 2026-05-01T01:37:05,275 * https://www.piwheels.org/simple/fibsem/ 2026-05-01T01:37:05,276 Fetching project page and analyzing links: https://pypi.org/simple/fibsem/ 2026-05-01T01:37:05,276 Getting page https://pypi.org/simple/fibsem/ 2026-05-01T01:37:05,278 Found index url https://pypi.org/simple 2026-05-01T01:37:05,425 Fetched page https://pypi.org/simple/fibsem/ as application/vnd.pypi.simple.v1+json 2026-05-01T01:37:05,435 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/4c/cf/0ed2a796e278cf9de3d52e287cc7d8d9892c21c0a00920a9ff30f5033a56/fibsem-0.2.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,436 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ad/73/b8cf8db0dba6e191be400b025e534b4f6d7d18c39d86428101720ee58e4e/fibsem-0.2.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,436 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d7/30/b93e42954d23659272a1b8ac6f3dd60da6eff0df55fc4d31bb515f6934eb/fibsem-0.2.2a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,437 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/c8/8f/4bfbe20bfa2ca615b74ad68a1317c1b61df9a93f5f8c9df9e223c9b20623/fibsem-0.2.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,438 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/7c/63/681df259de02d04424d8e71530649f0949504d5b31aaf5086651b5804d0c/fibsem-0.2.3a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,438 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/36/98/67400e49fe61d7e9e58d04099a516c039d4493a9ce346276a2cb37774dcd/fibsem-0.2.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,439 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/39/cc/5b8579067af3dc74509ceaba38d5117cde72f44a85ca8bcc56f5ebee7260/fibsem-0.2.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,440 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/43/13/625dba2d4741c02a3e6c970399a725b644b9a058dadb2f5fea9e9420b4e3/fibsem-0.2.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,440 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/87/1d/1562b356490f6c485f927c52d4b36e774bd5b9588d7a8da4a3dc9432db01/fibsem-0.3.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,441 Found link https://files.pythonhosted.org/packages/ad/3e/400c07e0574bbab09f711951db2f6ad3f367a8feff8f6cbafa7af89fd67a/fibsem-0.3.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a0 2026-05-01T01:37:05,442 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/df/fb/4bad22a49352a49befdb7d1513163de5d8d1a4cfb0e60fa3ac4c67f20482/fibsem-0.3.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,443 Found link https://files.pythonhosted.org/packages/4e/58/d870caa49f7754b016226db2b7f0ec101164622fc2e82511e7bae7f95af6/fibsem-0.3.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a1 2026-05-01T01:37:05,444 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/05/51/0a0cc14778c2ae7f68a601aa26821327fc35e08bc81546ba6e3d10bc704f/fibsem-0.3.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,445 Found link https://files.pythonhosted.org/packages/fc/2b/fea39a412194d35634c6d7f2e0768021aa0f024b880a17251a3f377e1c5c/fibsem-0.3.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0 2026-05-01T01:37:05,445 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/32/8b/d53be8a146bfa866e850b13e6b80977d4c1bc527852fc4d0c0cfe0b6fc56/fibsem-0.3.1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,446 Found link https://files.pythonhosted.org/packages/52/84/03322d031fa283e8c468f6e706d59b3efe59dbb4e2341ffa012c5f68c127/fibsem-0.3.1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.1 2026-05-01T01:37:05,447 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/07/65/22b4f873c57c647b123c552214de8f533f12706e6ff2b419f08b02c6f421/fibsem-0.3.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,447 Found link https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2a1 2026-05-01T01:37:05,448 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/f1/9d/ddd526104faf19ad44ad941b136dc14a30e289abdfdffba15bc11d34580d/fibsem-0.3.2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,449 Found link https://files.pythonhosted.org/packages/ef/10/13c01c548f92955d5069ea9caebdd1023f876a338bc336ac42356f609ee3/fibsem-0.3.2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2 2026-05-01T01:37:05,450 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/11/d6/ca062c93720e61354700869b036fbf65a1c66d5ce32d7d6c4bc341aacc1b/fibsem-0.3.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,451 Found link https://files.pythonhosted.org/packages/4e/ae/8048dff3e2eeb2c922176c5c412f1aed2346897e814bb76d175a9c1cd82e/fibsem-0.3.3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.3 2026-05-01T01:37:05,451 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/21/59/9dd2fd247baf0dcb2eed618b0f769f5bc1536091bc1496b73c0938f40c46/fibsem-0.3.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,452 Found link https://files.pythonhosted.org/packages/9f/62/1216f24d3f73e3d59fdd03335ac32354d65b09adf33df98bbe0e5557435c/fibsem-0.3.4.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.4 2026-05-01T01:37:05,453 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/33/da/3b0edd81d35e70a37a7c6971bc14cf6f1319bbb2f6134a154a8b28438ae7/fibsem-0.3.5a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,454 Found link https://files.pythonhosted.org/packages/3d/9c/ab22b6240afebb565dc876215d16bc04f542f0ff2e613c67b4672f9204c2/fibsem-0.3.5a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5a0 2026-05-01T01:37:05,455 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/0f/a4/5e57da3c16013f96e4561ad7e626c80effe866291c940fec4e5fbae41422/fibsem-0.3.5a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,455 Found link https://files.pythonhosted.org/packages/f9/e9/9befd7e3843a21457f35f510c64de8e6838290535a98a395fa6e5908bf02/fibsem-0.3.5a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5a1 2026-05-01T01:37:05,456 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/75/eb/25cdfe7f1f81b41f7fbbd9cf96b56a98d7f4742591e5c3a8fb339a069a7d/fibsem-0.3.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,457 Found link https://files.pythonhosted.org/packages/8a/7e/10d7149bc1716834fedc742963e72fcc96bd285123f16709977bcb2684e9/fibsem-0.3.5.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5 2026-05-01T01:37:05,457 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ae/f8/9c2df761ed582f1c2c92c7c46b6ee4aa2a8f1619d6e401de8385fc6e00e9/fibsem-0.4.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,458 Found link https://files.pythonhosted.org/packages/64/12/714c2603b3b3b4ebcfac53ade0c2ed0d224ab2a8bd917afd9fe00d5413d5/fibsem-0.4.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0a0 2026-05-01T01:37:05,459 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/95/33/9eefd81e39af42a7532203895ed23f99a09f414d85b6e9284aa476b102bc/fibsem-0.4.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,459 Found link https://files.pythonhosted.org/packages/1e/5e/26a692b01fbe9c5364137c3148600c9e2233781c9a0e34c8bfe1da84893d/fibsem-0.4.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0a1 2026-05-01T01:37:05,460 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ec/ff/909e849d3be278770eb1508a10e2f939921f5ab95efa8c89a151c4521fa2/fibsem-0.4.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,461 Found link https://files.pythonhosted.org/packages/89/99/54e5d7dcca80171de48c15cffa723ebf5faf35d9200751a7b14f034219c9/fibsem-0.4.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0 2026-05-01T01:37:05,462 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/b7/54/92008c36160b8efa013e845b339c19a50667ab80d8cd211a0b0136e4a378/fibsem-0.4.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,463 Found link https://files.pythonhosted.org/packages/09/b9/b86de8ca0eac74efc8b1e2377d831c85ab8d262ad6adf5bdb8bf88d709ea/fibsem-0.4.1a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a0 2026-05-01T01:37:05,463 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/b0/20/91878a10a278dbf43d56e655b3713730fd3a0a6335ced331bd4af4fc874e/fibsem-0.4.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,464 Found link https://files.pythonhosted.org/packages/e5/17/b068e52e2c71cdc8828a5f0f31a356c0b7e09cb265efc2ffa08b2ab70ec9/fibsem-0.4.1a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a1 2026-05-01T01:37:05,465 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/eb/f7/bc7aef2af42dbf3f5648ddd9c4c7930481ede0645e443a87d87e23dc3f08/fibsem-0.4.1a2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,466 Found link https://files.pythonhosted.org/packages/9e/83/be802fe2f6e6fb705ebac5145db3d3a939d1b5e1327cb5bb8ad45c5f4305/fibsem-0.4.1a2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a2 2026-05-01T01:37:05,467 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/15/82/c99977c3335d171af14c03d2f53a4a1bd048224ed87c01f80bc24340b105/fibsem-0.4.1a3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,467 Found link https://files.pythonhosted.org/packages/f9/e9/54e857b1e5bb2b435024c52d8abb0b427ef158d26586e52a86f434714e0c/fibsem-0.4.1a3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a3 2026-05-01T01:37:05,468 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d0/9c/60e16a3d93af71b12812af969a172d1b9d369b960f60943f10ece0a2d167/fibsem-0.4.1a4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,469 Found link https://files.pythonhosted.org/packages/19/7c/6056a88900926891a94bffde93b3a015c9c4dc5dfa9befff3f3933894309/fibsem-0.4.1a4.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a4 2026-05-01T01:37:05,469 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/cd/02/ca02f2a1e3bac94c02272882d51d877790d68389669e5d1c60307b88f496/fibsem-0.5.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,470 Found link https://files.pythonhosted.org/packages/f6/6b/60043dfe9472157e09ffa3670331b8abeb3bd75dc02a8099505558e5e93f/fibsem-0.5.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.0a0 2026-05-01T01:37:05,471 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/22/f7/5f10026a07d6a57a0076edd43b8cb2aa6c99ca7627d73d4148a79b4ce0b7/fibsem-0.5.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,471 Found link https://files.pythonhosted.org/packages/66/de/006e53849fac7a6e5d6668db30c6cd33d4422d4a5249fbe74b30d1fe7c19/fibsem-0.5.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.0 2026-05-01T01:37:05,472 Fetching project page and analyzing links: https://www.piwheels.org/simple/fibsem/ 2026-05-01T01:37:05,473 Getting page https://www.piwheels.org/simple/fibsem/ 2026-05-01T01:37:05,475 Found index url https://www.piwheels.org/simple 2026-05-01T01:37:05,647 Fetched page https://www.piwheels.org/simple/fibsem/ as text/html 2026-05-01T01:37:05,654 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.5.0a0-py3-none-any.whl#sha256=8f78e1d1482c67775abcba3f0c698dc068a0fc178b3300a51b9b677427dc81b0 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,655 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a4-py3-none-any.whl#sha256=2f04e69d16c03c706c43703b5ce41458efa13fe47eaa337b74e0d806509d3612 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,655 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a3-py3-none-any.whl#sha256=620cc24270b7a249a18139807818849e86a947f852c570645bc9f2c3b71db009 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,656 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a2-py3-none-any.whl#sha256=5557b81b8968a7f877b11c83853ed170098f2ee12566d77d98858c338aafc987 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,656 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a1-py3-none-any.whl#sha256=434323dc920982d3a11a05f9a371b789c651c079f5b3f52b4e0f9767e023a66d (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,657 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a0-py3-none-any.whl#sha256=8cdf5947bf8ac28f8c66c56b535af7e4642d6ef9e668f3d3b7c2152ded7de2a9 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,658 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0-py3-none-any.whl#sha256=d51667917771fa9625169eb96dbaca2b235a8ab7dc5f1ad678102966817c27b7 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,658 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0a1-py3-none-any.whl#sha256=35162b65a87e942fdae287f95d40ff34365a9fc9e91bce94cc45ebc8282649f4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,659 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0a0-py3-none-any.whl#sha256=ca3bfce078100cd46e8df58808fc5047703e27d0a7caee586a6752762440536f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,659 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5-py3-none-any.whl#sha256=f8cb477984f69afce9e1c14235d4b8e40a1f277935b6f52ef50c0eca324cd39e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,659 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5a1-py3-none-any.whl#sha256=77b52127685127a616d9707a30d4cb10f49b742d812f27d3e89e5c56bfdce097 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,660 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5a0-py3-none-any.whl#sha256=d78b21af3febbdf8bf524f0bc121a306f875d0db18bac01bcca54e4e9a1e51e2 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-05-01T01:37:05,660 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.4-py3-none-any.whl#sha256=935ab1545a500df6e9fec6103fc7f2bbcd2709303844c87d666bb1d16193beab (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,661 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.3-py3-none-any.whl#sha256=a7b254be73ea431bbe9eba8b7fd7b425ad830568cfbf5ec0b574b350178d2e76 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,661 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.2-py3-none-any.whl#sha256=8dad9ff09be4720143e8d4a3866d6b17ed08c732b68f47dd110d400bfe2be28e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,662 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.2a1-py3-none-any.whl#sha256=f5309995df9eadda9e861edc7dd4d07452210426b10d4c4da4c2b405eb8e2ac4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,662 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.1-py3-none-any.whl#sha256=72ca906da40a31401ad7636438566ad77e6d6ef434c85d4517c7411645c41027 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,663 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0-py3-none-any.whl#sha256=61d366cbae13eecb465c904050eba503bb875f93c6e743eedcfae3ca9cf5e2ac (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,663 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0a1-py3-none-any.whl#sha256=21ae6ee6be3ad2f8832a6d457a20aea2627a25340a672d8a42f9f0488d8a710c (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,664 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0a0-py3-none-any.whl#sha256=4e29ec9054961edc9242d2cb332c01000bcb0574069ad23261e41ac7f1489a4f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-05-01T01:37:05,665 Skipping link: not a file: https://www.piwheels.org/simple/fibsem/ 2026-05-01T01:37:05,665 Skipping link: not a file: https://pypi.org/simple/fibsem/ 2026-05-01T01:37:05,687 Given no hashes to check 1 links for project 'fibsem': discarding no candidates 2026-05-01T01:37:05,706 Collecting fibsem==0.5.0 2026-05-01T01:37:05,709 Created temporary directory: /tmp/pip-unpack-ler7bqaj 2026-05-01T01:37:05,945 Downloading fibsem-0.5.0.tar.gz (10.4 MB) 2026-05-01T01:37:08,485 Added fibsem==0.5.0 from https://files.pythonhosted.org/packages/66/de/006e53849fac7a6e5d6668db30c6cd33d4422d4a5249fbe74b30d1fe7c19/fibsem-0.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-wx0tssy6' 2026-05-01T01:37:08,492 Created temporary directory: /tmp/pip-build-env-u27os5kk 2026-05-01T01:37:08,497 Installing build dependencies: started 2026-05-01T01:37:08,498 Running command pip subprocess to install build dependencies 2026-05-01T01:37:09,738 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-01T01:37:10,250 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-01T01:37:10,279 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-01T01:37:12,070 Collecting setuptools>=45 2026-05-01T01:37:12,153 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-01T01:37:12,434 Collecting wheel 2026-05-01T01:37:12,455 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-01T01:37:12,834 Collecting setuptools_scm[toml]>=6.2 2026-05-01T01:37:12,859 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-01T01:37:13,045 Collecting packaging>=24.0 2026-05-01T01:37:13,063 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-01T01:37:13,157 Collecting vcs-versioning>=1.0.0.dev0 2026-05-01T01:37:13,177 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-01T01:37:16,246 Installing collected packages: setuptools, packaging, wheel, vcs-versioning, setuptools_scm 2026-05-01T01:37:19,685 Creating /tmp/pip-build-env-u27os5kk/overlay/local/bin 2026-05-01T01:37:19,687 changing mode of /tmp/pip-build-env-u27os5kk/overlay/local/bin/wheel to 755 2026-05-01T01:37:19,993 changing mode of /tmp/pip-build-env-u27os5kk/overlay/local/bin/vcs-versioning to 755 2026-05-01T01:37:20,100 changing mode of /tmp/pip-build-env-u27os5kk/overlay/local/bin/setuptools-scm to 755 2026-05-01T01:37:20,134 Successfully installed packaging-26.2 setuptools-82.0.1 setuptools_scm-10.0.5 vcs-versioning-1.1.1 wheel-0.47.0 2026-05-01T01:37:20,427 Installing build dependencies: finished with status 'done' 2026-05-01T01:37:20,434 Getting requirements to build wheel: started 2026-05-01T01:37:20,435 Running command Getting requirements to build wheel 2026-05-01T01:37:21,085 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-05-01T01:37:21,131 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-01T01:37:21,131 !! 2026-05-01T01:37:21,132 ******************************************************************************** 2026-05-01T01:37:21,133 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-01T01:37:21,134 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-01T01:37:21,134 or your builds will no longer be supported. 2026-05-01T01:37:21,135 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:37:21,136 ******************************************************************************** 2026-05-01T01:37:21,136 !! 2026-05-01T01:37:21,137 corresp(dist, value, root_dir) 2026-05-01T01:37:21,209 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:37:21,210 !! 2026-05-01T01:37:21,211 ******************************************************************************** 2026-05-01T01:37:21,211 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:37:21,212 License :: OSI Approved :: MIT License 2026-05-01T01:37:21,213 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:37:21,214 ******************************************************************************** 2026-05-01T01:37:21,215 !! 2026-05-01T01:37:21,216 dist._finalize_license_expression() 2026-05-01T01:37:21,217 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:37:21,218 !! 2026-05-01T01:37:21,219 ******************************************************************************** 2026-05-01T01:37:21,219 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:37:21,221 License :: OSI Approved :: MIT License 2026-05-01T01:37:21,222 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:37:21,222 ******************************************************************************** 2026-05-01T01:37:21,223 !! 2026-05-01T01:37:21,224 self._finalize_license_expression() 2026-05-01T01:37:21,226 running egg_info 2026-05-01T01:37:21,234 writing fibsem.egg-info/PKG-INFO 2026-05-01T01:37:21,243 writing dependency_links to fibsem.egg-info/dependency_links.txt 2026-05-01T01:37:21,245 writing entry points to fibsem.egg-info/entry_points.txt 2026-05-01T01:37:21,251 writing requirements to fibsem.egg-info/requires.txt 2026-05-01T01:37:21,252 writing top-level names to fibsem.egg-info/top_level.txt 2026-05-01T01:37:21,289 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-01T01:37:21,290 return get_active_overrides().subprocess_timeout 2026-05-01T01:37:21,297 listing git files failed - pretending there aren't any 2026-05-01T01:37:21,306 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2026-05-01T01:37:21,371 reading manifest template 'MANIFEST.in' 2026-05-01T01:37:21,374 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-05-01T01:37:21,375 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-05-01T01:37:21,376 warning: no previously-included files matching '*.ui' found under directory '*' 2026-05-01T01:37:21,378 adding license file 'LICENSE' 2026-05-01T01:37:21,391 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2026-05-01T01:37:21,497 Getting requirements to build wheel: finished with status 'done' 2026-05-01T01:37:21,501 Created temporary directory: /tmp/pip-modern-metadata-epk42en8 2026-05-01T01:37:21,503 Preparing metadata (pyproject.toml): started 2026-05-01T01:37:21,504 Running command Preparing metadata (pyproject.toml) 2026-05-01T01:37:22,147 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-05-01T01:37:22,191 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-01T01:37:22,192 !! 2026-05-01T01:37:22,193 ******************************************************************************** 2026-05-01T01:37:22,193 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-01T01:37:22,194 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-01T01:37:22,194 or your builds will no longer be supported. 2026-05-01T01:37:22,195 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:37:22,196 ******************************************************************************** 2026-05-01T01:37:22,197 !! 2026-05-01T01:37:22,197 corresp(dist, value, root_dir) 2026-05-01T01:37:22,264 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:37:22,265 !! 2026-05-01T01:37:22,266 ******************************************************************************** 2026-05-01T01:37:22,267 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:37:22,268 License :: OSI Approved :: MIT License 2026-05-01T01:37:22,269 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:37:22,270 ******************************************************************************** 2026-05-01T01:37:22,271 !! 2026-05-01T01:37:22,272 dist._finalize_license_expression() 2026-05-01T01:37:22,273 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:37:22,273 !! 2026-05-01T01:37:22,275 ******************************************************************************** 2026-05-01T01:37:22,275 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:37:22,276 License :: OSI Approved :: MIT License 2026-05-01T01:37:22,277 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:37:22,278 ******************************************************************************** 2026-05-01T01:37:22,279 !! 2026-05-01T01:37:22,280 self._finalize_license_expression() 2026-05-01T01:37:22,282 running dist_info 2026-05-01T01:37:22,295 creating /tmp/pip-modern-metadata-epk42en8/fibsem.egg-info 2026-05-01T01:37:22,296 writing /tmp/pip-modern-metadata-epk42en8/fibsem.egg-info/PKG-INFO 2026-05-01T01:37:22,306 writing dependency_links to /tmp/pip-modern-metadata-epk42en8/fibsem.egg-info/dependency_links.txt 2026-05-01T01:37:22,307 writing entry points to /tmp/pip-modern-metadata-epk42en8/fibsem.egg-info/entry_points.txt 2026-05-01T01:37:22,314 writing requirements to /tmp/pip-modern-metadata-epk42en8/fibsem.egg-info/requires.txt 2026-05-01T01:37:22,315 writing top-level names to /tmp/pip-modern-metadata-epk42en8/fibsem.egg-info/top_level.txt 2026-05-01T01:37:22,316 writing manifest file '/tmp/pip-modern-metadata-epk42en8/fibsem.egg-info/SOURCES.txt' 2026-05-01T01:37:22,349 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-01T01:37:22,350 return get_active_overrides().subprocess_timeout 2026-05-01T01:37:22,356 listing git files failed - pretending there aren't any 2026-05-01T01:37:22,364 reading manifest file '/tmp/pip-modern-metadata-epk42en8/fibsem.egg-info/SOURCES.txt' 2026-05-01T01:37:22,366 reading manifest template 'MANIFEST.in' 2026-05-01T01:37:22,367 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-05-01T01:37:22,368 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-05-01T01:37:22,369 warning: no previously-included files matching '*.ui' found under directory '*' 2026-05-01T01:37:22,370 adding license file 'LICENSE' 2026-05-01T01:37:22,373 writing manifest file '/tmp/pip-modern-metadata-epk42en8/fibsem.egg-info/SOURCES.txt' 2026-05-01T01:37:22,374 creating '/tmp/pip-modern-metadata-epk42en8/fibsem-0.5.0.dist-info' 2026-05-01T01:37:22,508 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-01T01:37:22,513 Source in /tmp/pip-wheel-9pzkt4jb/fibsem_66be073a4caf44789489489db36a67b8 has version 0.5.0, which satisfies requirement fibsem==0.5.0 from https://files.pythonhosted.org/packages/66/de/006e53849fac7a6e5d6668db30c6cd33d4422d4a5249fbe74b30d1fe7c19/fibsem-0.5.0.tar.gz 2026-05-01T01:37:22,514 Removed fibsem==0.5.0 from https://files.pythonhosted.org/packages/66/de/006e53849fac7a6e5d6668db30c6cd33d4422d4a5249fbe74b30d1fe7c19/fibsem-0.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-wx0tssy6' 2026-05-01T01:37:22,520 Created temporary directory: /tmp/pip-unpack-rx4h7rhj 2026-05-01T01:37:22,520 Building wheels for collected packages: fibsem 2026-05-01T01:37:22,525 Created temporary directory: /tmp/pip-wheel-swq0hrpf 2026-05-01T01:37:22,525 Destination directory: /tmp/pip-wheel-swq0hrpf 2026-05-01T01:37:22,528 Building wheel for fibsem (pyproject.toml): started 2026-05-01T01:37:22,529 Running command Building wheel for fibsem (pyproject.toml) 2026-05-01T01:37:23,130 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-05-01T01:37:23,173 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-01T01:37:23,173 !! 2026-05-01T01:37:23,174 ******************************************************************************** 2026-05-01T01:37:23,175 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-01T01:37:23,176 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-01T01:37:23,177 or your builds will no longer be supported. 2026-05-01T01:37:23,178 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:37:23,178 ******************************************************************************** 2026-05-01T01:37:23,180 !! 2026-05-01T01:37:23,180 corresp(dist, value, root_dir) 2026-05-01T01:37:23,241 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:37:23,242 !! 2026-05-01T01:37:23,243 ******************************************************************************** 2026-05-01T01:37:23,243 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:37:23,244 License :: OSI Approved :: MIT License 2026-05-01T01:37:23,245 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:37:23,245 ******************************************************************************** 2026-05-01T01:37:23,246 !! 2026-05-01T01:37:23,247 dist._finalize_license_expression() 2026-05-01T01:37:23,249 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-01T01:37:23,249 !! 2026-05-01T01:37:23,250 ******************************************************************************** 2026-05-01T01:37:23,251 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-01T01:37:23,252 License :: OSI Approved :: MIT License 2026-05-01T01:37:23,253 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-01T01:37:23,253 ******************************************************************************** 2026-05-01T01:37:23,254 !! 2026-05-01T01:37:23,254 self._finalize_license_expression() 2026-05-01T01:37:23,255 running bdist_wheel 2026-05-01T01:37:23,275 running build 2026-05-01T01:37:23,275 running build_py 2026-05-01T01:37:23,277 creating build/lib/fibsem 2026-05-01T01:37:23,279 copying fibsem/alignment.py -> build/lib/fibsem 2026-05-01T01:37:23,282 copying fibsem/microscope.py -> build/lib/fibsem 2026-05-01T01:37:23,288 copying fibsem/configuration.py -> build/lib/fibsem 2026-05-01T01:37:23,290 copying fibsem/logo.py -> build/lib/fibsem 2026-05-01T01:37:23,292 copying fibsem/gis.py -> build/lib/fibsem 2026-05-01T01:37:23,294 copying fibsem/acquire.py -> build/lib/fibsem 2026-05-01T01:37:23,296 copying fibsem/conversions.py -> build/lib/fibsem 2026-05-01T01:37:23,298 copying fibsem/constants.py -> build/lib/fibsem 2026-05-01T01:37:23,300 copying fibsem/movement.py -> build/lib/fibsem 2026-05-01T01:37:23,302 copying fibsem/utils.py -> build/lib/fibsem 2026-05-01T01:37:23,304 copying fibsem/structures.py -> build/lib/fibsem 2026-05-01T01:37:23,308 copying fibsem/config.py -> build/lib/fibsem 2026-05-01T01:37:23,311 copying fibsem/__init__.py -> build/lib/fibsem 2026-05-01T01:37:23,313 copying fibsem/calibration.py -> build/lib/fibsem 2026-05-01T01:37:23,315 copying fibsem/transformations.py -> build/lib/fibsem 2026-05-01T01:37:23,317 copying fibsem/validation.py -> build/lib/fibsem 2026-05-01T01:37:23,319 running egg_info 2026-05-01T01:37:23,332 writing fibsem.egg-info/PKG-INFO 2026-05-01T01:37:23,340 writing dependency_links to fibsem.egg-info/dependency_links.txt 2026-05-01T01:37:23,342 writing entry points to fibsem.egg-info/entry_points.txt 2026-05-01T01:37:23,348 writing requirements to fibsem.egg-info/requires.txt 2026-05-01T01:37:23,349 writing top-level names to fibsem.egg-info/top_level.txt 2026-05-01T01:37:23,376 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-01T01:37:23,376 return get_active_overrides().subprocess_timeout 2026-05-01T01:37:23,383 listing git files failed - pretending there aren't any 2026-05-01T01:37:23,390 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2026-05-01T01:37:23,411 reading manifest template 'MANIFEST.in' 2026-05-01T01:37:23,413 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-05-01T01:37:23,415 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-05-01T01:37:23,416 warning: no previously-included files matching '*.ui' found under directory '*' 2026-05-01T01:37:23,417 adding license file 'LICENSE' 2026-05-01T01:37:23,430 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2026-05-01T01:37:23,433 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications' is absent from the `packages` configuration. 2026-05-01T01:37:23,434 !! 2026-05-01T01:37:23,435 ******************************************************************************** 2026-05-01T01:37:23,435 ############################ 2026-05-01T01:37:23,435 # Package would be ignored # 2026-05-01T01:37:23,436 ############################ 2026-05-01T01:37:23,436 Python recognizes 'fibsem.applications' as an importable package[^1], 2026-05-01T01:37:23,437 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,438 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,438 package, please make sure that 'fibsem.applications' is explicitly added 2026-05-01T01:37:23,438 to the `packages` configuration field. 2026-05-01T01:37:23,439 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,440 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,440 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,441 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,442 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,444 If you don't want 'fibsem.applications' to be distributed and are 2026-05-01T01:37:23,444 already explicitly excluding 'fibsem.applications' via 2026-05-01T01:37:23,445 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,446 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,446 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,447 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,448 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,450 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,451 even if it does not contain any `.py` files. 2026-05-01T01:37:23,451 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,452 directory, all directories are treated like packages. 2026-05-01T01:37:23,452 ******************************************************************************** 2026-05-01T01:37:23,453 !! 2026-05-01T01:37:23,453 check.warn(importable) 2026-05-01T01:37:23,454 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella' is absent from the `packages` configuration. 2026-05-01T01:37:23,454 !! 2026-05-01T01:37:23,455 ******************************************************************************** 2026-05-01T01:37:23,456 ############################ 2026-05-01T01:37:23,457 # Package would be ignored # 2026-05-01T01:37:23,457 ############################ 2026-05-01T01:37:23,458 Python recognizes 'fibsem.applications.autolamella' as an importable package[^1], 2026-05-01T01:37:23,458 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,459 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,460 package, please make sure that 'fibsem.applications.autolamella' is explicitly added 2026-05-01T01:37:23,461 to the `packages` configuration field. 2026-05-01T01:37:23,461 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,462 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,462 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,463 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,463 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,464 If you don't want 'fibsem.applications.autolamella' to be distributed and are 2026-05-01T01:37:23,464 already explicitly excluding 'fibsem.applications.autolamella' via 2026-05-01T01:37:23,465 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,465 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,465 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,466 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,467 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,468 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,468 even if it does not contain any `.py` files. 2026-05-01T01:37:23,469 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,469 directory, all directories are treated like packages. 2026-05-01T01:37:23,469 ******************************************************************************** 2026-05-01T01:37:23,470 !! 2026-05-01T01:37:23,471 check.warn(importable) 2026-05-01T01:37:23,471 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.compat' is absent from the `packages` configuration. 2026-05-01T01:37:23,472 !! 2026-05-01T01:37:23,473 ******************************************************************************** 2026-05-01T01:37:23,474 ############################ 2026-05-01T01:37:23,474 # Package would be ignored # 2026-05-01T01:37:23,475 ############################ 2026-05-01T01:37:23,475 Python recognizes 'fibsem.applications.autolamella.compat' as an importable package[^1], 2026-05-01T01:37:23,476 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,477 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,477 package, please make sure that 'fibsem.applications.autolamella.compat' is explicitly added 2026-05-01T01:37:23,478 to the `packages` configuration field. 2026-05-01T01:37:23,478 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,479 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,479 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,480 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,481 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,482 If you don't want 'fibsem.applications.autolamella.compat' to be distributed and are 2026-05-01T01:37:23,483 already explicitly excluding 'fibsem.applications.autolamella.compat' via 2026-05-01T01:37:23,483 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,484 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,484 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,485 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,486 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,487 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,487 even if it does not contain any `.py` files. 2026-05-01T01:37:23,487 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,488 directory, all directories are treated like packages. 2026-05-01T01:37:23,488 ******************************************************************************** 2026-05-01T01:37:23,489 !! 2026-05-01T01:37:23,489 check.warn(importable) 2026-05-01T01:37:23,489 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.protocol' is absent from the `packages` configuration. 2026-05-01T01:37:23,490 !! 2026-05-01T01:37:23,490 ******************************************************************************** 2026-05-01T01:37:23,491 ############################ 2026-05-01T01:37:23,491 # Package would be ignored # 2026-05-01T01:37:23,491 ############################ 2026-05-01T01:37:23,492 Python recognizes 'fibsem.applications.autolamella.protocol' as an importable package[^1], 2026-05-01T01:37:23,492 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,493 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,493 package, please make sure that 'fibsem.applications.autolamella.protocol' is explicitly added 2026-05-01T01:37:23,494 to the `packages` configuration field. 2026-05-01T01:37:23,495 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,496 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,496 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,497 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,498 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,499 If you don't want 'fibsem.applications.autolamella.protocol' to be distributed and are 2026-05-01T01:37:23,500 already explicitly excluding 'fibsem.applications.autolamella.protocol' via 2026-05-01T01:37:23,500 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,501 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,501 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,502 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,503 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,504 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,505 even if it does not contain any `.py` files. 2026-05-01T01:37:23,505 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,506 directory, all directories are treated like packages. 2026-05-01T01:37:23,506 ******************************************************************************** 2026-05-01T01:37:23,507 !! 2026-05-01T01:37:23,508 check.warn(importable) 2026-05-01T01:37:23,508 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.protocol.legacy' is absent from the `packages` configuration. 2026-05-01T01:37:23,508 !! 2026-05-01T01:37:23,510 ******************************************************************************** 2026-05-01T01:37:23,510 ############################ 2026-05-01T01:37:23,510 # Package would be ignored # 2026-05-01T01:37:23,511 ############################ 2026-05-01T01:37:23,511 Python recognizes 'fibsem.applications.autolamella.protocol.legacy' as an importable package[^1], 2026-05-01T01:37:23,511 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,512 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,512 package, please make sure that 'fibsem.applications.autolamella.protocol.legacy' is explicitly added 2026-05-01T01:37:23,513 to the `packages` configuration field. 2026-05-01T01:37:23,513 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,514 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,514 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,515 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,516 If you don't want 'fibsem.applications.autolamella.protocol.legacy' to be distributed and are 2026-05-01T01:37:23,516 already explicitly excluding 'fibsem.applications.autolamella.protocol.legacy' via 2026-05-01T01:37:23,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,517 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,518 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,519 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,522 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,522 even if it does not contain any `.py` files. 2026-05-01T01:37:23,523 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,523 directory, all directories are treated like packages. 2026-05-01T01:37:23,524 ******************************************************************************** 2026-05-01T01:37:23,525 !! 2026-05-01T01:37:23,526 check.warn(importable) 2026-05-01T01:37:23,526 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.tools' is absent from the `packages` configuration. 2026-05-01T01:37:23,527 !! 2026-05-01T01:37:23,528 ******************************************************************************** 2026-05-01T01:37:23,528 ############################ 2026-05-01T01:37:23,529 # Package would be ignored # 2026-05-01T01:37:23,529 ############################ 2026-05-01T01:37:23,530 Python recognizes 'fibsem.applications.autolamella.tools' as an importable package[^1], 2026-05-01T01:37:23,530 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,531 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,531 package, please make sure that 'fibsem.applications.autolamella.tools' is explicitly added 2026-05-01T01:37:23,532 to the `packages` configuration field. 2026-05-01T01:37:23,533 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,533 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,534 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,535 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,536 If you don't want 'fibsem.applications.autolamella.tools' to be distributed and are 2026-05-01T01:37:23,537 already explicitly excluding 'fibsem.applications.autolamella.tools' via 2026-05-01T01:37:23,537 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,537 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,538 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,538 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,539 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,540 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,540 even if it does not contain any `.py` files. 2026-05-01T01:37:23,541 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,541 directory, all directories are treated like packages. 2026-05-01T01:37:23,541 ******************************************************************************** 2026-05-01T01:37:23,542 !! 2026-05-01T01:37:23,542 check.warn(importable) 2026-05-01T01:37:23,543 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.ui' is absent from the `packages` configuration. 2026-05-01T01:37:23,543 !! 2026-05-01T01:37:23,544 ******************************************************************************** 2026-05-01T01:37:23,545 ############################ 2026-05-01T01:37:23,545 # Package would be ignored # 2026-05-01T01:37:23,546 ############################ 2026-05-01T01:37:23,546 Python recognizes 'fibsem.applications.autolamella.ui' as an importable package[^1], 2026-05-01T01:37:23,546 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,547 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,548 package, please make sure that 'fibsem.applications.autolamella.ui' is explicitly added 2026-05-01T01:37:23,548 to the `packages` configuration field. 2026-05-01T01:37:23,550 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,550 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,551 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,551 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,552 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,553 If you don't want 'fibsem.applications.autolamella.ui' to be distributed and are 2026-05-01T01:37:23,554 already explicitly excluding 'fibsem.applications.autolamella.ui' via 2026-05-01T01:37:23,554 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,554 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,555 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,556 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,557 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,558 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,559 even if it does not contain any `.py` files. 2026-05-01T01:37:23,560 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,560 directory, all directories are treated like packages. 2026-05-01T01:37:23,560 ******************************************************************************** 2026-05-01T01:37:23,561 !! 2026-05-01T01:37:23,561 check.warn(importable) 2026-05-01T01:37:23,562 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.ui.tests' is absent from the `packages` configuration. 2026-05-01T01:37:23,562 !! 2026-05-01T01:37:23,563 ******************************************************************************** 2026-05-01T01:37:23,563 ############################ 2026-05-01T01:37:23,563 # Package would be ignored # 2026-05-01T01:37:23,564 ############################ 2026-05-01T01:37:23,564 Python recognizes 'fibsem.applications.autolamella.ui.tests' as an importable package[^1], 2026-05-01T01:37:23,564 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,565 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,565 package, please make sure that 'fibsem.applications.autolamella.ui.tests' is explicitly added 2026-05-01T01:37:23,566 to the `packages` configuration field. 2026-05-01T01:37:23,567 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,567 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,568 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,569 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,570 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,571 If you don't want 'fibsem.applications.autolamella.ui.tests' to be distributed and are 2026-05-01T01:37:23,571 already explicitly excluding 'fibsem.applications.autolamella.ui.tests' via 2026-05-01T01:37:23,572 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,572 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,573 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,574 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,575 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,576 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,577 even if it does not contain any `.py` files. 2026-05-01T01:37:23,577 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,578 directory, all directories are treated like packages. 2026-05-01T01:37:23,578 ******************************************************************************** 2026-05-01T01:37:23,579 !! 2026-05-01T01:37:23,580 check.warn(importable) 2026-05-01T01:37:23,580 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows' is absent from the `packages` configuration. 2026-05-01T01:37:23,580 !! 2026-05-01T01:37:23,581 ******************************************************************************** 2026-05-01T01:37:23,582 ############################ 2026-05-01T01:37:23,582 # Package would be ignored # 2026-05-01T01:37:23,583 ############################ 2026-05-01T01:37:23,584 Python recognizes 'fibsem.applications.autolamella.workflows' as an importable package[^1], 2026-05-01T01:37:23,584 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,585 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,585 package, please make sure that 'fibsem.applications.autolamella.workflows' is explicitly added 2026-05-01T01:37:23,586 to the `packages` configuration field. 2026-05-01T01:37:23,586 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,587 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,587 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,588 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,588 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,589 If you don't want 'fibsem.applications.autolamella.workflows' to be distributed and are 2026-05-01T01:37:23,590 already explicitly excluding 'fibsem.applications.autolamella.workflows' via 2026-05-01T01:37:23,590 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,591 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,591 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,592 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,593 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,594 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,595 even if it does not contain any `.py` files. 2026-05-01T01:37:23,595 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,596 directory, all directories are treated like packages. 2026-05-01T01:37:23,596 ******************************************************************************** 2026-05-01T01:37:23,597 !! 2026-05-01T01:37:23,598 check.warn(importable) 2026-05-01T01:37:23,598 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows.legacy' is absent from the `packages` configuration. 2026-05-01T01:37:23,599 !! 2026-05-01T01:37:23,600 ******************************************************************************** 2026-05-01T01:37:23,601 ############################ 2026-05-01T01:37:23,601 # Package would be ignored # 2026-05-01T01:37:23,602 ############################ 2026-05-01T01:37:23,602 Python recognizes 'fibsem.applications.autolamella.workflows.legacy' as an importable package[^1], 2026-05-01T01:37:23,602 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,603 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,604 package, please make sure that 'fibsem.applications.autolamella.workflows.legacy' is explicitly added 2026-05-01T01:37:23,604 to the `packages` configuration field. 2026-05-01T01:37:23,605 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,606 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,606 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,607 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,608 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,609 If you don't want 'fibsem.applications.autolamella.workflows.legacy' to be distributed and are 2026-05-01T01:37:23,610 already explicitly excluding 'fibsem.applications.autolamella.workflows.legacy' via 2026-05-01T01:37:23,610 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,611 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,611 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,612 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,612 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,613 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,614 even if it does not contain any `.py` files. 2026-05-01T01:37:23,614 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,614 directory, all directories are treated like packages. 2026-05-01T01:37:23,615 ******************************************************************************** 2026-05-01T01:37:23,615 !! 2026-05-01T01:37:23,616 check.warn(importable) 2026-05-01T01:37:23,616 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows.tasks' is absent from the `packages` configuration. 2026-05-01T01:37:23,616 !! 2026-05-01T01:37:23,617 ******************************************************************************** 2026-05-01T01:37:23,618 ############################ 2026-05-01T01:37:23,618 # Package would be ignored # 2026-05-01T01:37:23,619 ############################ 2026-05-01T01:37:23,619 Python recognizes 'fibsem.applications.autolamella.workflows.tasks' as an importable package[^1], 2026-05-01T01:37:23,620 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,621 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,621 package, please make sure that 'fibsem.applications.autolamella.workflows.tasks' is explicitly added 2026-05-01T01:37:23,622 to the `packages` configuration field. 2026-05-01T01:37:23,623 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,624 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,624 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,625 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,626 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,627 If you don't want 'fibsem.applications.autolamella.workflows.tasks' to be distributed and are 2026-05-01T01:37:23,628 already explicitly excluding 'fibsem.applications.autolamella.workflows.tasks' via 2026-05-01T01:37:23,628 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,628 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,629 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,630 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,631 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,632 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,633 even if it does not contain any `.py` files. 2026-05-01T01:37:23,633 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,634 directory, all directories are treated like packages. 2026-05-01T01:37:23,634 ******************************************************************************** 2026-05-01T01:37:23,635 !! 2026-05-01T01:37:23,636 check.warn(importable) 2026-05-01T01:37:23,636 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.chat' is absent from the `packages` configuration. 2026-05-01T01:37:23,637 !! 2026-05-01T01:37:23,637 ******************************************************************************** 2026-05-01T01:37:23,637 ############################ 2026-05-01T01:37:23,638 # Package would be ignored # 2026-05-01T01:37:23,638 ############################ 2026-05-01T01:37:23,638 Python recognizes 'fibsem.chat' as an importable package[^1], 2026-05-01T01:37:23,639 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,639 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,640 package, please make sure that 'fibsem.chat' is explicitly added 2026-05-01T01:37:23,640 to the `packages` configuration field. 2026-05-01T01:37:23,641 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,641 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,641 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,642 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,643 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,644 If you don't want 'fibsem.chat' to be distributed and are 2026-05-01T01:37:23,644 already explicitly excluding 'fibsem.chat' via 2026-05-01T01:37:23,645 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,645 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,646 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,647 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,648 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,649 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,650 even if it does not contain any `.py` files. 2026-05-01T01:37:23,651 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,651 directory, all directories are treated like packages. 2026-05-01T01:37:23,652 ******************************************************************************** 2026-05-01T01:37:23,653 !! 2026-05-01T01:37:23,653 check.warn(importable) 2026-05-01T01:37:23,653 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.config' is absent from the `packages` configuration. 2026-05-01T01:37:23,654 !! 2026-05-01T01:37:23,655 ******************************************************************************** 2026-05-01T01:37:23,655 ############################ 2026-05-01T01:37:23,656 # Package would be ignored # 2026-05-01T01:37:23,656 ############################ 2026-05-01T01:37:23,656 Python recognizes 'fibsem.config' as an importable package[^1], 2026-05-01T01:37:23,657 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,658 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,659 package, please make sure that 'fibsem.config' is explicitly added 2026-05-01T01:37:23,659 to the `packages` configuration field. 2026-05-01T01:37:23,660 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,662 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,662 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,664 If you don't want 'fibsem.config' to be distributed and are 2026-05-01T01:37:23,664 already explicitly excluding 'fibsem.config' via 2026-05-01T01:37:23,664 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,665 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,665 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,666 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,666 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,668 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,668 even if it does not contain any `.py` files. 2026-05-01T01:37:23,668 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,669 directory, all directories are treated like packages. 2026-05-01T01:37:23,669 ******************************************************************************** 2026-05-01T01:37:23,670 !! 2026-05-01T01:37:23,670 check.warn(importable) 2026-05-01T01:37:23,671 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation' is absent from the `packages` configuration. 2026-05-01T01:37:23,671 !! 2026-05-01T01:37:23,672 ******************************************************************************** 2026-05-01T01:37:23,673 ############################ 2026-05-01T01:37:23,673 # Package would be ignored # 2026-05-01T01:37:23,674 ############################ 2026-05-01T01:37:23,674 Python recognizes 'fibsem.correlation' as an importable package[^1], 2026-05-01T01:37:23,675 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,676 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,676 package, please make sure that 'fibsem.correlation' is explicitly added 2026-05-01T01:37:23,677 to the `packages` configuration field. 2026-05-01T01:37:23,678 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,679 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,679 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,680 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,681 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,682 If you don't want 'fibsem.correlation' to be distributed and are 2026-05-01T01:37:23,682 already explicitly excluding 'fibsem.correlation' via 2026-05-01T01:37:23,683 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,683 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,684 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,685 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,686 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,687 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,688 even if it does not contain any `.py` files. 2026-05-01T01:37:23,688 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,689 directory, all directories are treated like packages. 2026-05-01T01:37:23,689 ******************************************************************************** 2026-05-01T01:37:23,690 !! 2026-05-01T01:37:23,690 check.warn(importable) 2026-05-01T01:37:23,690 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.pyto' is absent from the `packages` configuration. 2026-05-01T01:37:23,691 !! 2026-05-01T01:37:23,691 ******************************************************************************** 2026-05-01T01:37:23,692 ############################ 2026-05-01T01:37:23,692 # Package would be ignored # 2026-05-01T01:37:23,692 ############################ 2026-05-01T01:37:23,693 Python recognizes 'fibsem.correlation.pyto' as an importable package[^1], 2026-05-01T01:37:23,693 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,694 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,694 package, please make sure that 'fibsem.correlation.pyto' is explicitly added 2026-05-01T01:37:23,694 to the `packages` configuration field. 2026-05-01T01:37:23,695 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,695 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,696 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,697 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,698 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,699 If you don't want 'fibsem.correlation.pyto' to be distributed and are 2026-05-01T01:37:23,699 already explicitly excluding 'fibsem.correlation.pyto' via 2026-05-01T01:37:23,700 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,700 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,701 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,702 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,703 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,704 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,704 even if it does not contain any `.py` files. 2026-05-01T01:37:23,705 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,705 directory, all directories are treated like packages. 2026-05-01T01:37:23,706 ******************************************************************************** 2026-05-01T01:37:23,707 !! 2026-05-01T01:37:23,707 check.warn(importable) 2026-05-01T01:37:23,707 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.pyto.test' is absent from the `packages` configuration. 2026-05-01T01:37:23,708 !! 2026-05-01T01:37:23,709 ******************************************************************************** 2026-05-01T01:37:23,709 ############################ 2026-05-01T01:37:23,710 # Package would be ignored # 2026-05-01T01:37:23,711 ############################ 2026-05-01T01:37:23,711 Python recognizes 'fibsem.correlation.pyto.test' as an importable package[^1], 2026-05-01T01:37:23,712 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,713 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,713 package, please make sure that 'fibsem.correlation.pyto.test' is explicitly added 2026-05-01T01:37:23,714 to the `packages` configuration field. 2026-05-01T01:37:23,714 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,715 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,715 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,716 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,716 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,717 If you don't want 'fibsem.correlation.pyto.test' to be distributed and are 2026-05-01T01:37:23,717 already explicitly excluding 'fibsem.correlation.pyto.test' via 2026-05-01T01:37:23,718 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,718 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,718 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,719 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,720 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,721 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,721 even if it does not contain any `.py` files. 2026-05-01T01:37:23,722 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,722 directory, all directories are treated like packages. 2026-05-01T01:37:23,723 ******************************************************************************** 2026-05-01T01:37:23,724 !! 2026-05-01T01:37:23,724 check.warn(importable) 2026-05-01T01:37:23,725 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.ui' is absent from the `packages` configuration. 2026-05-01T01:37:23,725 !! 2026-05-01T01:37:23,726 ******************************************************************************** 2026-05-01T01:37:23,727 ############################ 2026-05-01T01:37:23,727 # Package would be ignored # 2026-05-01T01:37:23,728 ############################ 2026-05-01T01:37:23,728 Python recognizes 'fibsem.correlation.ui' as an importable package[^1], 2026-05-01T01:37:23,729 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,730 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,731 package, please make sure that 'fibsem.correlation.ui' is explicitly added 2026-05-01T01:37:23,731 to the `packages` configuration field. 2026-05-01T01:37:23,732 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,733 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,733 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,734 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,735 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,736 If you don't want 'fibsem.correlation.ui' to be distributed and are 2026-05-01T01:37:23,737 already explicitly excluding 'fibsem.correlation.ui' via 2026-05-01T01:37:23,737 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,738 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,738 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,739 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,740 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,741 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,741 even if it does not contain any `.py` files. 2026-05-01T01:37:23,742 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,742 directory, all directories are treated like packages. 2026-05-01T01:37:23,742 ******************************************************************************** 2026-05-01T01:37:23,743 !! 2026-05-01T01:37:23,743 check.warn(importable) 2026-05-01T01:37:23,744 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.ui.qt' is absent from the `packages` configuration. 2026-05-01T01:37:23,744 !! 2026-05-01T01:37:23,745 ******************************************************************************** 2026-05-01T01:37:23,745 ############################ 2026-05-01T01:37:23,746 # Package would be ignored # 2026-05-01T01:37:23,746 ############################ 2026-05-01T01:37:23,746 Python recognizes 'fibsem.correlation.ui.qt' as an importable package[^1], 2026-05-01T01:37:23,747 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,748 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,748 package, please make sure that 'fibsem.correlation.ui.qt' is explicitly added 2026-05-01T01:37:23,748 to the `packages` configuration field. 2026-05-01T01:37:23,749 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,750 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,751 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,752 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,754 If you don't want 'fibsem.correlation.ui.qt' to be distributed and are 2026-05-01T01:37:23,754 already explicitly excluding 'fibsem.correlation.ui.qt' via 2026-05-01T01:37:23,755 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,755 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,756 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,757 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,759 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,759 even if it does not contain any `.py` files. 2026-05-01T01:37:23,760 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,760 directory, all directories are treated like packages. 2026-05-01T01:37:23,761 ******************************************************************************** 2026-05-01T01:37:23,762 !! 2026-05-01T01:37:23,762 check.warn(importable) 2026-05-01T01:37:23,763 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection' is absent from the `packages` configuration. 2026-05-01T01:37:23,763 !! 2026-05-01T01:37:23,765 ******************************************************************************** 2026-05-01T01:37:23,765 ############################ 2026-05-01T01:37:23,765 # Package would be ignored # 2026-05-01T01:37:23,766 ############################ 2026-05-01T01:37:23,766 Python recognizes 'fibsem.detection' as an importable package[^1], 2026-05-01T01:37:23,766 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,767 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,767 package, please make sure that 'fibsem.detection' is explicitly added 2026-05-01T01:37:23,768 to the `packages` configuration field. 2026-05-01T01:37:23,768 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,769 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,769 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,770 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,771 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,771 If you don't want 'fibsem.detection' to be distributed and are 2026-05-01T01:37:23,772 already explicitly excluding 'fibsem.detection' via 2026-05-01T01:37:23,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,772 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,773 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,774 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,775 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,776 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,777 even if it does not contain any `.py` files. 2026-05-01T01:37:23,777 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,777 directory, all directories are treated like packages. 2026-05-01T01:37:23,778 ******************************************************************************** 2026-05-01T01:37:23,779 !! 2026-05-01T01:37:23,780 check.warn(importable) 2026-05-01T01:37:23,780 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection.test_images' is absent from the `packages` configuration. 2026-05-01T01:37:23,781 !! 2026-05-01T01:37:23,782 ******************************************************************************** 2026-05-01T01:37:23,782 ############################ 2026-05-01T01:37:23,783 # Package would be ignored # 2026-05-01T01:37:23,783 ############################ 2026-05-01T01:37:23,784 Python recognizes 'fibsem.detection.test_images' as an importable package[^1], 2026-05-01T01:37:23,784 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,785 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,785 package, please make sure that 'fibsem.detection.test_images' is explicitly added 2026-05-01T01:37:23,786 to the `packages` configuration field. 2026-05-01T01:37:23,787 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,787 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,788 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,789 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,790 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,791 If you don't want 'fibsem.detection.test_images' to be distributed and are 2026-05-01T01:37:23,791 already explicitly excluding 'fibsem.detection.test_images' via 2026-05-01T01:37:23,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,792 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,793 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,794 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,795 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,795 even if it does not contain any `.py` files. 2026-05-01T01:37:23,795 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,796 directory, all directories are treated like packages. 2026-05-01T01:37:23,796 ******************************************************************************** 2026-05-01T01:37:23,797 !! 2026-05-01T01:37:23,797 check.warn(importable) 2026-05-01T01:37:23,797 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection.test_images.serial' is absent from the `packages` configuration. 2026-05-01T01:37:23,798 !! 2026-05-01T01:37:23,799 ******************************************************************************** 2026-05-01T01:37:23,799 ############################ 2026-05-01T01:37:23,800 # Package would be ignored # 2026-05-01T01:37:23,800 ############################ 2026-05-01T01:37:23,801 Python recognizes 'fibsem.detection.test_images.serial' as an importable package[^1], 2026-05-01T01:37:23,802 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,803 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,803 package, please make sure that 'fibsem.detection.test_images.serial' is explicitly added 2026-05-01T01:37:23,804 to the `packages` configuration field. 2026-05-01T01:37:23,805 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,806 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,806 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,808 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,808 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,809 If you don't want 'fibsem.detection.test_images.serial' to be distributed and are 2026-05-01T01:37:23,810 already explicitly excluding 'fibsem.detection.test_images.serial' via 2026-05-01T01:37:23,810 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,811 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,811 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,812 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,813 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,815 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,815 even if it does not contain any `.py` files. 2026-05-01T01:37:23,816 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,816 directory, all directories are treated like packages. 2026-05-01T01:37:23,817 ******************************************************************************** 2026-05-01T01:37:23,818 !! 2026-05-01T01:37:23,818 check.warn(importable) 2026-05-01T01:37:23,819 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.imaging' is absent from the `packages` configuration. 2026-05-01T01:37:23,819 !! 2026-05-01T01:37:23,820 ******************************************************************************** 2026-05-01T01:37:23,820 ############################ 2026-05-01T01:37:23,820 # Package would be ignored # 2026-05-01T01:37:23,821 ############################ 2026-05-01T01:37:23,821 Python recognizes 'fibsem.imaging' as an importable package[^1], 2026-05-01T01:37:23,821 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,822 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,822 package, please make sure that 'fibsem.imaging' is explicitly added 2026-05-01T01:37:23,823 to the `packages` configuration field. 2026-05-01T01:37:23,823 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,824 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,824 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,825 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,826 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,827 If you don't want 'fibsem.imaging' to be distributed and are 2026-05-01T01:37:23,827 already explicitly excluding 'fibsem.imaging' via 2026-05-01T01:37:23,828 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,828 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,829 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,830 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,831 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,833 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,833 even if it does not contain any `.py` files. 2026-05-01T01:37:23,834 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,835 directory, all directories are treated like packages. 2026-05-01T01:37:23,835 ******************************************************************************** 2026-05-01T01:37:23,836 !! 2026-05-01T01:37:23,836 check.warn(importable) 2026-05-01T01:37:23,837 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.imaging.tests' is absent from the `packages` configuration. 2026-05-01T01:37:23,837 !! 2026-05-01T01:37:23,838 ******************************************************************************** 2026-05-01T01:37:23,839 ############################ 2026-05-01T01:37:23,839 # Package would be ignored # 2026-05-01T01:37:23,840 ############################ 2026-05-01T01:37:23,840 Python recognizes 'fibsem.imaging.tests' as an importable package[^1], 2026-05-01T01:37:23,841 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,842 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,842 package, please make sure that 'fibsem.imaging.tests' is explicitly added 2026-05-01T01:37:23,843 to the `packages` configuration field. 2026-05-01T01:37:23,844 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,844 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,845 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,845 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,846 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,847 If you don't want 'fibsem.imaging.tests' to be distributed and are 2026-05-01T01:37:23,847 already explicitly excluding 'fibsem.imaging.tests' via 2026-05-01T01:37:23,847 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,848 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,848 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,848 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,849 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,850 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,851 even if it does not contain any `.py` files. 2026-05-01T01:37:23,851 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,851 directory, all directories are treated like packages. 2026-05-01T01:37:23,852 ******************************************************************************** 2026-05-01T01:37:23,853 !! 2026-05-01T01:37:23,853 check.warn(importable) 2026-05-01T01:37:23,854 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.microscopes' is absent from the `packages` configuration. 2026-05-01T01:37:23,854 !! 2026-05-01T01:37:23,855 ******************************************************************************** 2026-05-01T01:37:23,856 ############################ 2026-05-01T01:37:23,856 # Package would be ignored # 2026-05-01T01:37:23,857 ############################ 2026-05-01T01:37:23,857 Python recognizes 'fibsem.microscopes' as an importable package[^1], 2026-05-01T01:37:23,858 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,859 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,859 package, please make sure that 'fibsem.microscopes' is explicitly added 2026-05-01T01:37:23,860 to the `packages` configuration field. 2026-05-01T01:37:23,861 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,861 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,862 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,863 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,863 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,864 If you don't want 'fibsem.microscopes' to be distributed and are 2026-05-01T01:37:23,865 already explicitly excluding 'fibsem.microscopes' via 2026-05-01T01:37:23,865 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,866 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,866 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,867 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,868 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,870 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,870 even if it does not contain any `.py` files. 2026-05-01T01:37:23,871 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,871 directory, all directories are treated like packages. 2026-05-01T01:37:23,871 ******************************************************************************** 2026-05-01T01:37:23,872 !! 2026-05-01T01:37:23,872 check.warn(importable) 2026-05-01T01:37:23,873 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling' is absent from the `packages` configuration. 2026-05-01T01:37:23,873 !! 2026-05-01T01:37:23,874 ******************************************************************************** 2026-05-01T01:37:23,874 ############################ 2026-05-01T01:37:23,875 # Package would be ignored # 2026-05-01T01:37:23,875 ############################ 2026-05-01T01:37:23,876 Python recognizes 'fibsem.milling' as an importable package[^1], 2026-05-01T01:37:23,876 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,877 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,878 package, please make sure that 'fibsem.milling' is explicitly added 2026-05-01T01:37:23,878 to the `packages` configuration field. 2026-05-01T01:37:23,879 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,879 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,880 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,881 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,882 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,883 If you don't want 'fibsem.milling' to be distributed and are 2026-05-01T01:37:23,884 already explicitly excluding 'fibsem.milling' via 2026-05-01T01:37:23,884 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,885 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,886 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,887 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,888 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,889 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,890 even if it does not contain any `.py` files. 2026-05-01T01:37:23,890 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,891 directory, all directories are treated like packages. 2026-05-01T01:37:23,891 ******************************************************************************** 2026-05-01T01:37:23,892 !! 2026-05-01T01:37:23,893 check.warn(importable) 2026-05-01T01:37:23,893 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling.patterning' is absent from the `packages` configuration. 2026-05-01T01:37:23,894 !! 2026-05-01T01:37:23,895 ******************************************************************************** 2026-05-01T01:37:23,895 ############################ 2026-05-01T01:37:23,896 # Package would be ignored # 2026-05-01T01:37:23,896 ############################ 2026-05-01T01:37:23,897 Python recognizes 'fibsem.milling.patterning' as an importable package[^1], 2026-05-01T01:37:23,897 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,898 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,899 package, please make sure that 'fibsem.milling.patterning' is explicitly added 2026-05-01T01:37:23,899 to the `packages` configuration field. 2026-05-01T01:37:23,900 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,900 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,901 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,901 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,902 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,904 If you don't want 'fibsem.milling.patterning' to be distributed and are 2026-05-01T01:37:23,904 already explicitly excluding 'fibsem.milling.patterning' via 2026-05-01T01:37:23,905 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,906 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,907 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,908 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,910 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,910 even if it does not contain any `.py` files. 2026-05-01T01:37:23,911 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,911 directory, all directories are treated like packages. 2026-05-01T01:37:23,912 ******************************************************************************** 2026-05-01T01:37:23,913 !! 2026-05-01T01:37:23,913 check.warn(importable) 2026-05-01T01:37:23,914 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling.strategy' is absent from the `packages` configuration. 2026-05-01T01:37:23,914 !! 2026-05-01T01:37:23,915 ******************************************************************************** 2026-05-01T01:37:23,916 ############################ 2026-05-01T01:37:23,917 # Package would be ignored # 2026-05-01T01:37:23,917 ############################ 2026-05-01T01:37:23,917 Python recognizes 'fibsem.milling.strategy' as an importable package[^1], 2026-05-01T01:37:23,918 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,919 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,919 package, please make sure that 'fibsem.milling.strategy' is explicitly added 2026-05-01T01:37:23,920 to the `packages` configuration field. 2026-05-01T01:37:23,921 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,921 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,922 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,923 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,924 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,925 If you don't want 'fibsem.milling.strategy' to be distributed and are 2026-05-01T01:37:23,925 already explicitly excluding 'fibsem.milling.strategy' via 2026-05-01T01:37:23,926 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,926 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,927 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,928 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,929 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,930 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,931 even if it does not contain any `.py` files. 2026-05-01T01:37:23,931 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,931 directory, all directories are treated like packages. 2026-05-01T01:37:23,932 ******************************************************************************** 2026-05-01T01:37:23,933 !! 2026-05-01T01:37:23,933 check.warn(importable) 2026-05-01T01:37:23,934 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation' is absent from the `packages` configuration. 2026-05-01T01:37:23,934 !! 2026-05-01T01:37:23,935 ******************************************************************************** 2026-05-01T01:37:23,935 ############################ 2026-05-01T01:37:23,936 # Package would be ignored # 2026-05-01T01:37:23,936 ############################ 2026-05-01T01:37:23,937 Python recognizes 'fibsem.segmentation' as an importable package[^1], 2026-05-01T01:37:23,937 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,938 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,939 package, please make sure that 'fibsem.segmentation' is explicitly added 2026-05-01T01:37:23,939 to the `packages` configuration field. 2026-05-01T01:37:23,940 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,941 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,941 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,942 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,943 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,944 If you don't want 'fibsem.segmentation' to be distributed and are 2026-05-01T01:37:23,945 already explicitly excluding 'fibsem.segmentation' via 2026-05-01T01:37:23,945 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,945 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,946 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,947 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,948 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,950 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,950 even if it does not contain any `.py` files. 2026-05-01T01:37:23,951 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,951 directory, all directories are treated like packages. 2026-05-01T01:37:23,952 ******************************************************************************** 2026-05-01T01:37:23,953 !! 2026-05-01T01:37:23,953 check.warn(importable) 2026-05-01T01:37:23,954 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs' is absent from the `packages` configuration. 2026-05-01T01:37:23,954 !! 2026-05-01T01:37:23,955 ******************************************************************************** 2026-05-01T01:37:23,956 ############################ 2026-05-01T01:37:23,956 # Package would be ignored # 2026-05-01T01:37:23,957 ############################ 2026-05-01T01:37:23,957 Python recognizes 'fibsem.segmentation.docs' as an importable package[^1], 2026-05-01T01:37:23,957 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,958 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,959 package, please make sure that 'fibsem.segmentation.docs' is explicitly added 2026-05-01T01:37:23,959 to the `packages` configuration field. 2026-05-01T01:37:23,960 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,961 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,962 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,963 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,964 If you don't want 'fibsem.segmentation.docs' to be distributed and are 2026-05-01T01:37:23,964 already explicitly excluding 'fibsem.segmentation.docs' via 2026-05-01T01:37:23,965 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,965 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,966 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,967 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,968 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,969 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,970 even if it does not contain any `.py` files. 2026-05-01T01:37:23,970 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,971 directory, all directories are treated like packages. 2026-05-01T01:37:23,971 ******************************************************************************** 2026-05-01T01:37:23,972 !! 2026-05-01T01:37:23,973 check.warn(importable) 2026-05-01T01:37:23,973 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.combined' is absent from the `packages` configuration. 2026-05-01T01:37:23,974 !! 2026-05-01T01:37:23,975 ******************************************************************************** 2026-05-01T01:37:23,975 ############################ 2026-05-01T01:37:23,975 # Package would be ignored # 2026-05-01T01:37:23,976 ############################ 2026-05-01T01:37:23,976 Python recognizes 'fibsem.segmentation.docs.imgs.combined' as an importable package[^1], 2026-05-01T01:37:23,977 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,978 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,979 package, please make sure that 'fibsem.segmentation.docs.imgs.combined' is explicitly added 2026-05-01T01:37:23,979 to the `packages` configuration field. 2026-05-01T01:37:23,980 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:23,981 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:23,981 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:23,982 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:23,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:23,985 If you don't want 'fibsem.segmentation.docs.imgs.combined' to be distributed and are 2026-05-01T01:37:23,985 already explicitly excluding 'fibsem.segmentation.docs.imgs.combined' via 2026-05-01T01:37:23,986 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:23,986 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:23,987 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:23,988 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:23,988 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:23,990 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:23,990 even if it does not contain any `.py` files. 2026-05-01T01:37:23,990 On the other hand, currently there is no concept of package data 2026-05-01T01:37:23,991 directory, all directories are treated like packages. 2026-05-01T01:37:23,991 ******************************************************************************** 2026-05-01T01:37:23,992 !! 2026-05-01T01:37:23,992 check.warn(importable) 2026-05-01T01:37:23,993 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.labelled' is absent from the `packages` configuration. 2026-05-01T01:37:23,993 !! 2026-05-01T01:37:23,994 ******************************************************************************** 2026-05-01T01:37:23,995 ############################ 2026-05-01T01:37:23,995 # Package would be ignored # 2026-05-01T01:37:23,996 ############################ 2026-05-01T01:37:23,996 Python recognizes 'fibsem.segmentation.docs.imgs.labelled' as an importable package[^1], 2026-05-01T01:37:23,997 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:23,998 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:23,998 package, please make sure that 'fibsem.segmentation.docs.imgs.labelled' is explicitly added 2026-05-01T01:37:23,999 to the `packages` configuration field. 2026-05-01T01:37:24,000 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,000 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,001 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,001 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,003 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,004 If you don't want 'fibsem.segmentation.docs.imgs.labelled' to be distributed and are 2026-05-01T01:37:24,004 already explicitly excluding 'fibsem.segmentation.docs.imgs.labelled' via 2026-05-01T01:37:24,005 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,005 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,006 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,007 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,008 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,009 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,010 even if it does not contain any `.py` files. 2026-05-01T01:37:24,011 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,012 directory, all directories are treated like packages. 2026-05-01T01:37:24,012 ******************************************************************************** 2026-05-01T01:37:24,013 !! 2026-05-01T01:37:24,013 check.warn(importable) 2026-05-01T01:37:24,014 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.raw' is absent from the `packages` configuration. 2026-05-01T01:37:24,014 !! 2026-05-01T01:37:24,015 ******************************************************************************** 2026-05-01T01:37:24,015 ############################ 2026-05-01T01:37:24,016 # Package would be ignored # 2026-05-01T01:37:24,016 ############################ 2026-05-01T01:37:24,017 Python recognizes 'fibsem.segmentation.docs.imgs.raw' as an importable package[^1], 2026-05-01T01:37:24,017 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,018 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,019 package, please make sure that 'fibsem.segmentation.docs.imgs.raw' is explicitly added 2026-05-01T01:37:24,020 to the `packages` configuration field. 2026-05-01T01:37:24,021 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,022 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,022 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,024 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,025 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,026 If you don't want 'fibsem.segmentation.docs.imgs.raw' to be distributed and are 2026-05-01T01:37:24,027 already explicitly excluding 'fibsem.segmentation.docs.imgs.raw' via 2026-05-01T01:37:24,027 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,028 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,029 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,031 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,032 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,034 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,034 even if it does not contain any `.py` files. 2026-05-01T01:37:24,035 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,035 directory, all directories are treated like packages. 2026-05-01T01:37:24,036 ******************************************************************************** 2026-05-01T01:37:24,037 !! 2026-05-01T01:37:24,038 check.warn(importable) 2026-05-01T01:37:24,039 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.models' is absent from the `packages` configuration. 2026-05-01T01:37:24,039 !! 2026-05-01T01:37:24,041 ******************************************************************************** 2026-05-01T01:37:24,041 ############################ 2026-05-01T01:37:24,042 # Package would be ignored # 2026-05-01T01:37:24,043 ############################ 2026-05-01T01:37:24,043 Python recognizes 'fibsem.segmentation.models' as an importable package[^1], 2026-05-01T01:37:24,044 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,046 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,047 package, please make sure that 'fibsem.segmentation.models' is explicitly added 2026-05-01T01:37:24,047 to the `packages` configuration field. 2026-05-01T01:37:24,048 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,049 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,050 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,051 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,052 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,053 If you don't want 'fibsem.segmentation.models' to be distributed and are 2026-05-01T01:37:24,053 already explicitly excluding 'fibsem.segmentation.models' via 2026-05-01T01:37:24,054 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,054 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,055 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,056 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,058 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,059 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,060 even if it does not contain any `.py` files. 2026-05-01T01:37:24,061 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,061 directory, all directories are treated like packages. 2026-05-01T01:37:24,062 ******************************************************************************** 2026-05-01T01:37:24,063 !! 2026-05-01T01:37:24,064 check.warn(importable) 2026-05-01T01:37:24,064 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.server' is absent from the `packages` configuration. 2026-05-01T01:37:24,065 !! 2026-05-01T01:37:24,066 ******************************************************************************** 2026-05-01T01:37:24,067 ############################ 2026-05-01T01:37:24,068 # Package would be ignored # 2026-05-01T01:37:24,068 ############################ 2026-05-01T01:37:24,069 Python recognizes 'fibsem.server' as an importable package[^1], 2026-05-01T01:37:24,070 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,071 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,071 package, please make sure that 'fibsem.server' is explicitly added 2026-05-01T01:37:24,072 to the `packages` configuration field. 2026-05-01T01:37:24,073 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,074 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,075 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,076 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,077 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,079 If you don't want 'fibsem.server' to be distributed and are 2026-05-01T01:37:24,079 already explicitly excluding 'fibsem.server' via 2026-05-01T01:37:24,080 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,081 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,081 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,083 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,084 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,086 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,087 even if it does not contain any `.py` files. 2026-05-01T01:37:24,087 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,088 directory, all directories are treated like packages. 2026-05-01T01:37:24,088 ******************************************************************************** 2026-05-01T01:37:24,089 !! 2026-05-01T01:37:24,090 check.warn(importable) 2026-05-01T01:37:24,090 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.tools' is absent from the `packages` configuration. 2026-05-01T01:37:24,091 !! 2026-05-01T01:37:24,092 ******************************************************************************** 2026-05-01T01:37:24,093 ############################ 2026-05-01T01:37:24,093 # Package would be ignored # 2026-05-01T01:37:24,094 ############################ 2026-05-01T01:37:24,094 Python recognizes 'fibsem.tools' as an importable package[^1], 2026-05-01T01:37:24,095 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,096 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,097 package, please make sure that 'fibsem.tools' is explicitly added 2026-05-01T01:37:24,097 to the `packages` configuration field. 2026-05-01T01:37:24,099 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,099 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,100 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,101 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,103 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,104 If you don't want 'fibsem.tools' to be distributed and are 2026-05-01T01:37:24,104 already explicitly excluding 'fibsem.tools' via 2026-05-01T01:37:24,105 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,106 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,106 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,108 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,109 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,111 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,111 even if it does not contain any `.py` files. 2026-05-01T01:37:24,112 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,113 directory, all directories are treated like packages. 2026-05-01T01:37:24,113 ******************************************************************************** 2026-05-01T01:37:24,114 !! 2026-05-01T01:37:24,115 check.warn(importable) 2026-05-01T01:37:24,116 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui' is absent from the `packages` configuration. 2026-05-01T01:37:24,116 !! 2026-05-01T01:37:24,118 ******************************************************************************** 2026-05-01T01:37:24,118 ############################ 2026-05-01T01:37:24,119 # Package would be ignored # 2026-05-01T01:37:24,120 ############################ 2026-05-01T01:37:24,120 Python recognizes 'fibsem.ui' as an importable package[^1], 2026-05-01T01:37:24,120 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,121 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,121 package, please make sure that 'fibsem.ui' is explicitly added 2026-05-01T01:37:24,122 to the `packages` configuration field. 2026-05-01T01:37:24,123 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,123 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,124 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,125 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,126 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,127 If you don't want 'fibsem.ui' to be distributed and are 2026-05-01T01:37:24,127 already explicitly excluding 'fibsem.ui' via 2026-05-01T01:37:24,128 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,128 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,128 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,129 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,131 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,132 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,132 even if it does not contain any `.py` files. 2026-05-01T01:37:24,133 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,133 directory, all directories are treated like packages. 2026-05-01T01:37:24,134 ******************************************************************************** 2026-05-01T01:37:24,135 !! 2026-05-01T01:37:24,135 check.warn(importable) 2026-05-01T01:37:24,136 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.fm.widgets' is absent from the `packages` configuration. 2026-05-01T01:37:24,136 !! 2026-05-01T01:37:24,138 ******************************************************************************** 2026-05-01T01:37:24,138 ############################ 2026-05-01T01:37:24,138 # Package would be ignored # 2026-05-01T01:37:24,139 ############################ 2026-05-01T01:37:24,139 Python recognizes 'fibsem.ui.fm.widgets' as an importable package[^1], 2026-05-01T01:37:24,140 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,141 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,142 package, please make sure that 'fibsem.ui.fm.widgets' is explicitly added 2026-05-01T01:37:24,142 to the `packages` configuration field. 2026-05-01T01:37:24,143 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,144 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,145 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,146 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,148 If you don't want 'fibsem.ui.fm.widgets' to be distributed and are 2026-05-01T01:37:24,148 already explicitly excluding 'fibsem.ui.fm.widgets' via 2026-05-01T01:37:24,148 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,149 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,149 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,150 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,151 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,152 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,153 even if it does not contain any `.py` files. 2026-05-01T01:37:24,153 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,153 directory, all directories are treated like packages. 2026-05-01T01:37:24,154 ******************************************************************************** 2026-05-01T01:37:24,155 !! 2026-05-01T01:37:24,155 check.warn(importable) 2026-05-01T01:37:24,156 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.icons' is absent from the `packages` configuration. 2026-05-01T01:37:24,156 !! 2026-05-01T01:37:24,157 ******************************************************************************** 2026-05-01T01:37:24,158 ############################ 2026-05-01T01:37:24,158 # Package would be ignored # 2026-05-01T01:37:24,159 ############################ 2026-05-01T01:37:24,159 Python recognizes 'fibsem.ui.icons' as an importable package[^1], 2026-05-01T01:37:24,160 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,161 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,161 package, please make sure that 'fibsem.ui.icons' is explicitly added 2026-05-01T01:37:24,161 to the `packages` configuration field. 2026-05-01T01:37:24,162 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,163 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,163 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,164 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,166 If you don't want 'fibsem.ui.icons' to be distributed and are 2026-05-01T01:37:24,167 already explicitly excluding 'fibsem.ui.icons' via 2026-05-01T01:37:24,167 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,168 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,168 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,169 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,170 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,172 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,172 even if it does not contain any `.py` files. 2026-05-01T01:37:24,173 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,173 directory, all directories are treated like packages. 2026-05-01T01:37:24,174 ******************************************************************************** 2026-05-01T01:37:24,175 !! 2026-05-01T01:37:24,175 check.warn(importable) 2026-05-01T01:37:24,176 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.napari' is absent from the `packages` configuration. 2026-05-01T01:37:24,177 !! 2026-05-01T01:37:24,178 ******************************************************************************** 2026-05-01T01:37:24,178 ############################ 2026-05-01T01:37:24,179 # Package would be ignored # 2026-05-01T01:37:24,179 ############################ 2026-05-01T01:37:24,180 Python recognizes 'fibsem.ui.napari' as an importable package[^1], 2026-05-01T01:37:24,180 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,181 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,181 package, please make sure that 'fibsem.ui.napari' is explicitly added 2026-05-01T01:37:24,182 to the `packages` configuration field. 2026-05-01T01:37:24,183 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,183 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,184 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,184 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,187 If you don't want 'fibsem.ui.napari' to be distributed and are 2026-05-01T01:37:24,187 already explicitly excluding 'fibsem.ui.napari' via 2026-05-01T01:37:24,187 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,188 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,188 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,189 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,190 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,192 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,192 even if it does not contain any `.py` files. 2026-05-01T01:37:24,193 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,193 directory, all directories are treated like packages. 2026-05-01T01:37:24,194 ******************************************************************************** 2026-05-01T01:37:24,195 !! 2026-05-01T01:37:24,195 check.warn(importable) 2026-05-01T01:37:24,196 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.qtdesigner_files' is absent from the `packages` configuration. 2026-05-01T01:37:24,196 !! 2026-05-01T01:37:24,197 ******************************************************************************** 2026-05-01T01:37:24,198 ############################ 2026-05-01T01:37:24,198 # Package would be ignored # 2026-05-01T01:37:24,199 ############################ 2026-05-01T01:37:24,199 Python recognizes 'fibsem.ui.qtdesigner_files' as an importable package[^1], 2026-05-01T01:37:24,200 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,201 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,201 package, please make sure that 'fibsem.ui.qtdesigner_files' is explicitly added 2026-05-01T01:37:24,202 to the `packages` configuration field. 2026-05-01T01:37:24,203 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,203 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,204 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,205 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,206 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,207 If you don't want 'fibsem.ui.qtdesigner_files' to be distributed and are 2026-05-01T01:37:24,207 already explicitly excluding 'fibsem.ui.qtdesigner_files' via 2026-05-01T01:37:24,207 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,208 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,208 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,209 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,210 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,211 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,212 even if it does not contain any `.py` files. 2026-05-01T01:37:24,212 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,212 directory, all directories are treated like packages. 2026-05-01T01:37:24,213 ******************************************************************************** 2026-05-01T01:37:24,214 !! 2026-05-01T01:37:24,214 check.warn(importable) 2026-05-01T01:37:24,215 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.widgets' is absent from the `packages` configuration. 2026-05-01T01:37:24,215 !! 2026-05-01T01:37:24,216 ******************************************************************************** 2026-05-01T01:37:24,217 ############################ 2026-05-01T01:37:24,217 # Package would be ignored # 2026-05-01T01:37:24,218 ############################ 2026-05-01T01:37:24,218 Python recognizes 'fibsem.ui.widgets' as an importable package[^1], 2026-05-01T01:37:24,219 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,219 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,220 package, please make sure that 'fibsem.ui.widgets' is explicitly added 2026-05-01T01:37:24,220 to the `packages` configuration field. 2026-05-01T01:37:24,221 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,222 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,222 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,223 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,224 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,225 If you don't want 'fibsem.ui.widgets' to be distributed and are 2026-05-01T01:37:24,226 already explicitly excluding 'fibsem.ui.widgets' via 2026-05-01T01:37:24,226 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,227 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,227 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,228 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,229 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,231 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,231 even if it does not contain any `.py` files. 2026-05-01T01:37:24,232 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,233 directory, all directories are treated like packages. 2026-05-01T01:37:24,233 ******************************************************************************** 2026-05-01T01:37:24,234 !! 2026-05-01T01:37:24,234 check.warn(importable) 2026-05-01T01:37:24,235 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.widgets.tests' is absent from the `packages` configuration. 2026-05-01T01:37:24,235 !! 2026-05-01T01:37:24,236 ******************************************************************************** 2026-05-01T01:37:24,237 ############################ 2026-05-01T01:37:24,237 # Package would be ignored # 2026-05-01T01:37:24,238 ############################ 2026-05-01T01:37:24,238 Python recognizes 'fibsem.ui.widgets.tests' as an importable package[^1], 2026-05-01T01:37:24,238 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,239 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,240 package, please make sure that 'fibsem.ui.widgets.tests' is explicitly added 2026-05-01T01:37:24,240 to the `packages` configuration field. 2026-05-01T01:37:24,241 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,242 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,242 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,243 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,244 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,245 If you don't want 'fibsem.ui.widgets.tests' to be distributed and are 2026-05-01T01:37:24,246 already explicitly excluding 'fibsem.ui.widgets.tests' via 2026-05-01T01:37:24,246 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,246 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,247 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,248 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,250 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,252 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,252 even if it does not contain any `.py` files. 2026-05-01T01:37:24,253 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,254 directory, all directories are treated like packages. 2026-05-01T01:37:24,254 ******************************************************************************** 2026-05-01T01:37:24,255 !! 2026-05-01T01:37:24,256 check.warn(importable) 2026-05-01T01:37:24,257 /tmp/pip-build-env-u27os5kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.util' is absent from the `packages` configuration. 2026-05-01T01:37:24,257 !! 2026-05-01T01:37:24,258 ******************************************************************************** 2026-05-01T01:37:24,259 ############################ 2026-05-01T01:37:24,260 # Package would be ignored # 2026-05-01T01:37:24,260 ############################ 2026-05-01T01:37:24,261 Python recognizes 'fibsem.util' as an importable package[^1], 2026-05-01T01:37:24,261 but it is absent from setuptools' `packages` configuration. 2026-05-01T01:37:24,263 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-01T01:37:24,263 package, please make sure that 'fibsem.util' is explicitly added 2026-05-01T01:37:24,264 to the `packages` configuration field. 2026-05-01T01:37:24,265 Alternatively, you can also rely on setuptools' discovery methods 2026-05-01T01:37:24,266 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-01T01:37:24,267 instead of `find_packages(...)`/`find:`). 2026-05-01T01:37:24,268 You can read more about "package discovery" on setuptools documentation page: 2026-05-01T01:37:24,269 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-01T01:37:24,270 If you don't want 'fibsem.util' to be distributed and are 2026-05-01T01:37:24,271 already explicitly excluding 'fibsem.util' via 2026-05-01T01:37:24,271 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-01T01:37:24,272 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-01T01:37:24,272 combination with a more fine grained `package-data` configuration. 2026-05-01T01:37:24,273 You can read more about "package data files" on setuptools documentation page: 2026-05-01T01:37:24,274 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-01T01:37:24,285 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-01T01:37:24,286 even if it does not contain any `.py` files. 2026-05-01T01:37:24,286 On the other hand, currently there is no concept of package data 2026-05-01T01:37:24,287 directory, all directories are treated like packages. 2026-05-01T01:37:24,287 ******************************************************************************** 2026-05-01T01:37:24,288 !! 2026-05-01T01:37:24,289 check.warn(importable) 2026-05-01T01:37:24,289 creating build/lib/fibsem/applications 2026-05-01T01:37:24,290 copying fibsem/applications/__init__.py -> build/lib/fibsem/applications 2026-05-01T01:37:24,291 creating build/lib/fibsem/applications/autolamella 2026-05-01T01:37:24,291 copying fibsem/applications/autolamella/__init__.py -> build/lib/fibsem/applications/autolamella 2026-05-01T01:37:24,292 copying fibsem/applications/autolamella/config.py -> build/lib/fibsem/applications/autolamella 2026-05-01T01:37:24,293 copying fibsem/applications/autolamella/structures.py -> build/lib/fibsem/applications/autolamella 2026-05-01T01:37:24,293 copying fibsem/applications/autolamella/task_manager_queue.md -> build/lib/fibsem/applications/autolamella 2026-05-01T01:37:24,294 creating build/lib/fibsem/applications/autolamella/compat 2026-05-01T01:37:24,298 copying fibsem/applications/autolamella/compat/notebook.ipynb -> build/lib/fibsem/applications/autolamella/compat 2026-05-01T01:37:24,301 copying fibsem/applications/autolamella/compat/odemis.py -> build/lib/fibsem/applications/autolamella/compat 2026-05-01T01:37:24,308 creating build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:37:24,315 copying fibsem/applications/autolamella/protocol/.gitkeep -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:37:24,316 copying fibsem/applications/autolamella/protocol/__init__.py -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:37:24,316 copying fibsem/applications/autolamella/protocol/constants.py -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:37:24,317 copying fibsem/applications/autolamella/protocol/legacy.py -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:37:24,317 copying fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:37:24,318 copying fibsem/applications/autolamella/protocol/task-protocol.yaml -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:37:24,319 copying fibsem/applications/autolamella/protocol/validation.py -> build/lib/fibsem/applications/autolamella/protocol 2026-05-01T01:37:24,319 creating build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:24,320 copying fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:24,320 copying fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:24,321 copying fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:24,321 copying fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:24,322 copying fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:24,322 creating build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:37:24,322 copying fibsem/applications/autolamella/tools/__init__.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:37:24,323 copying fibsem/applications/autolamella/tools/data.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:37:24,323 copying fibsem/applications/autolamella/tools/notebook.ipynb -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:37:24,324 copying fibsem/applications/autolamella/tools/reporting.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:37:24,324 copying fibsem/applications/autolamella/tools/review.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:37:24,325 copying fibsem/applications/autolamella/tools/stats.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:37:24,325 copying fibsem/applications/autolamella/tools/upload_to_hf.py -> build/lib/fibsem/applications/autolamella/tools 2026-05-01T01:37:24,326 creating build/lib/fibsem/applications/autolamella/ui 2026-05-01T01:37:24,326 copying fibsem/applications/autolamella/ui/AutoLamellaMainUI.py -> build/lib/fibsem/applications/autolamella/ui 2026-05-01T01:37:24,327 copying fibsem/applications/autolamella/ui/AutoLamellaUI.py -> build/lib/fibsem/applications/autolamella/ui 2026-05-01T01:37:24,327 copying fibsem/applications/autolamella/ui/__init__.py -> build/lib/fibsem/applications/autolamella/ui 2026-05-01T01:37:24,328 copying fibsem/applications/autolamella/ui/run_ui.py -> build/lib/fibsem/applications/autolamella/ui 2026-05-01T01:37:24,328 creating build/lib/fibsem/applications/autolamella/ui/tests 2026-05-01T01:37:24,329 copying fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py -> build/lib/fibsem/applications/autolamella/ui/tests 2026-05-01T01:37:24,329 creating build/lib/fibsem/applications/autolamella/workflows 2026-05-01T01:37:24,330 copying fibsem/applications/autolamella/workflows/_default_milling_config.py -> build/lib/fibsem/applications/autolamella/workflows 2026-05-01T01:37:24,330 copying fibsem/applications/autolamella/workflows/core.py -> build/lib/fibsem/applications/autolamella/workflows 2026-05-01T01:37:24,331 copying fibsem/applications/autolamella/workflows/ui.py -> build/lib/fibsem/applications/autolamella/workflows 2026-05-01T01:37:24,331 creating build/lib/fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:37:24,332 copying fibsem/applications/autolamella/workflows/legacy/autoliftout.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:37:24,332 copying fibsem/applications/autolamella/workflows/legacy/experimental.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:37:24,333 copying fibsem/applications/autolamella/workflows/legacy/serial.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:37:24,333 creating build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,334 copying fibsem/applications/autolamella/workflows/tasks/__init__.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,334 copying fibsem/applications/autolamella/workflows/tasks/base.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,335 copying fibsem/applications/autolamella/workflows/tasks/basic_milling.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,335 copying fibsem/applications/autolamella/workflows/tasks/fiducial.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,336 copying fibsem/applications/autolamella/workflows/tasks/grid_tasks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,336 copying fibsem/applications/autolamella/workflows/tasks/hooks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,337 copying fibsem/applications/autolamella/workflows/tasks/manager.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,337 copying fibsem/applications/autolamella/workflows/tasks/polishing.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,338 copying fibsem/applications/autolamella/workflows/tasks/queue.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,338 copying fibsem/applications/autolamella/workflows/tasks/reference_image.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,338 copying fibsem/applications/autolamella/workflows/tasks/rough.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,339 copying fibsem/applications/autolamella/workflows/tasks/select_position.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,339 copying fibsem/applications/autolamella/workflows/tasks/spot_burn.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,340 copying fibsem/applications/autolamella/workflows/tasks/tasks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,340 copying fibsem/applications/autolamella/workflows/tasks/test_hooks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,341 copying fibsem/applications/autolamella/workflows/tasks/trench.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,341 copying fibsem/applications/autolamella/workflows/tasks/undercut.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:24,342 creating build/lib/fibsem/chat 2026-05-01T01:37:24,342 copying fibsem/chat/.gitignore -> build/lib/fibsem/chat 2026-05-01T01:37:24,343 copying fibsem/chat/main.py -> build/lib/fibsem/chat 2026-05-01T01:37:24,343 copying fibsem/chat/requirements.txt -> build/lib/fibsem/chat 2026-05-01T01:37:24,344 creating build/lib/fibsem/config 2026-05-01T01:37:24,344 copying fibsem/config/microscope-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:37:24,345 copying fibsem/config/odemis-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:37:24,345 copying fibsem/config/sample-holder.yaml -> build/lib/fibsem/config 2026-05-01T01:37:24,346 copying fibsem/config/sim-arctis-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:37:24,346 copying fibsem/config/tescan-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:37:24,347 copying fibsem/config/tescan_manipulator.yaml -> build/lib/fibsem/config 2026-05-01T01:37:24,347 copying fibsem/config/tfs-aquilos2-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:37:24,348 copying fibsem/config/tfs-arctis-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:37:24,348 copying fibsem/config/tfs-hydra-configuration.yaml -> build/lib/fibsem/config 2026-05-01T01:37:24,349 creating build/lib/fibsem/correlation 2026-05-01T01:37:24,349 copying fibsem/correlation/README.md -> build/lib/fibsem/correlation 2026-05-01T01:37:24,350 copying fibsem/correlation/__init__.py -> build/lib/fibsem/correlation 2026-05-01T01:37:24,350 copying fibsem/correlation/app.py -> build/lib/fibsem/correlation 2026-05-01T01:37:24,351 copying fibsem/correlation/correlation_v2.py -> build/lib/fibsem/correlation 2026-05-01T01:37:24,351 copying fibsem/correlation/io.py -> build/lib/fibsem/correlation 2026-05-01T01:37:24,352 copying fibsem/correlation/util.py -> build/lib/fibsem/correlation 2026-05-01T01:37:24,352 creating build/lib/fibsem/correlation/pyto 2026-05-01T01:37:24,353 copying fibsem/correlation/pyto/__init__.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:37:24,353 copying fibsem/correlation/pyto/affine.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:37:24,353 copying fibsem/correlation/pyto/affine_2d.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:37:24,354 copying fibsem/correlation/pyto/attributes.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:37:24,354 copying fibsem/correlation/pyto/common.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:37:24,355 copying fibsem/correlation/pyto/points.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:37:24,355 copying fibsem/correlation/pyto/rigid_3d.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:37:24,356 copying fibsem/correlation/pyto/util.py -> build/lib/fibsem/correlation/pyto 2026-05-01T01:37:24,356 creating build/lib/fibsem/correlation/pyto/test 2026-05-01T01:37:24,356 copying fibsem/correlation/pyto/test/test_affine.py -> build/lib/fibsem/correlation/pyto/test 2026-05-01T01:37:24,357 copying fibsem/correlation/pyto/test/test_affine_2d.py -> build/lib/fibsem/correlation/pyto/test 2026-05-01T01:37:24,357 copying fibsem/correlation/pyto/test/test_rigid_3d.py -> build/lib/fibsem/correlation/pyto/test 2026-05-01T01:37:24,358 creating build/lib/fibsem/correlation/ui 2026-05-01T01:37:24,358 copying fibsem/correlation/ui/__init__.py -> build/lib/fibsem/correlation/ui 2026-05-01T01:37:24,359 copying fibsem/correlation/ui/config.py -> build/lib/fibsem/correlation/ui 2026-05-01T01:37:24,359 copying fibsem/correlation/ui/fm_import_wizard.py -> build/lib/fibsem/correlation/ui 2026-05-01T01:37:24,360 copying fibsem/correlation/ui/pandas_table.py -> build/lib/fibsem/correlation/ui 2026-05-01T01:37:24,360 creating build/lib/fibsem/correlation/ui/qt 2026-05-01T01:37:24,361 copying fibsem/correlation/ui/qt/tdct_fm_import_wizard.py -> build/lib/fibsem/correlation/ui/qt 2026-05-01T01:37:24,361 copying fibsem/correlation/ui/qt/tdct_main.py -> build/lib/fibsem/correlation/ui/qt 2026-05-01T01:37:24,362 creating build/lib/fibsem/detection 2026-05-01T01:37:24,362 copying fibsem/detection/__init__.py -> build/lib/fibsem/detection 2026-05-01T01:37:24,363 copying fibsem/detection/config-autolamella-liftout-hf-mega.yaml -> build/lib/fibsem/detection 2026-05-01T01:37:24,363 copying fibsem/detection/config-autolamella-liftout.yaml -> build/lib/fibsem/detection 2026-05-01T01:37:24,364 copying fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml -> build/lib/fibsem/detection 2026-05-01T01:37:24,364 copying fibsem/detection/config-autolamella-serial-liftout.yaml -> build/lib/fibsem/detection 2026-05-01T01:37:24,365 copying fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml -> build/lib/fibsem/detection 2026-05-01T01:37:24,365 copying fibsem/detection/config-autolamella-waffle-v2.yaml -> build/lib/fibsem/detection 2026-05-01T01:37:24,366 copying fibsem/detection/config-autolamella-waffle.yml -> build/lib/fibsem/detection 2026-05-01T01:37:24,367 copying fibsem/detection/config-autoliftout-dm-embryo.yml -> build/lib/fibsem/detection 2026-05-01T01:37:24,367 copying fibsem/detection/detection.py -> build/lib/fibsem/detection 2026-05-01T01:37:24,368 copying fibsem/detection/evaluation.py -> build/lib/fibsem/detection 2026-05-01T01:37:24,369 copying fibsem/detection/run_evaluation.py -> build/lib/fibsem/detection 2026-05-01T01:37:24,369 copying fibsem/detection/test_image.tif -> build/lib/fibsem/detection 2026-05-01T01:37:24,370 copying fibsem/detection/test_image_2.tif -> build/lib/fibsem/detection 2026-05-01T01:37:24,370 copying fibsem/detection/utils.py -> build/lib/fibsem/detection 2026-05-01T01:37:24,371 creating build/lib/fibsem/detection/test_images 2026-05-01T01:37:24,371 copying fibsem/detection/test_images/test_needle_mask.tif -> build/lib/fibsem/detection/test_images 2026-05-01T01:37:24,372 copying fibsem/detection/test_images/test_needle_mask2.tif -> build/lib/fibsem/detection/test_images 2026-05-01T01:37:24,372 copying fibsem/detection/test_images/test_needle_mask3.tif -> build/lib/fibsem/detection/test_images 2026-05-01T01:37:24,372 creating build/lib/fibsem/detection/test_images/serial 2026-05-01T01:37:24,373 copying fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:37:24,373 copying fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:37:24,374 copying fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:37:24,374 copying fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:37:24,375 copying fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:37:24,375 copying fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:37:24,375 copying fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:37:24,376 copying fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/lib/fibsem/detection/test_images/serial 2026-05-01T01:37:24,376 creating build/lib/fibsem/imaging 2026-05-01T01:37:24,377 copying fibsem/imaging/.gitkeep -> build/lib/fibsem/imaging 2026-05-01T01:37:24,377 copying fibsem/imaging/__init__.py -> build/lib/fibsem/imaging 2026-05-01T01:37:24,378 copying fibsem/imaging/autogamma.py -> build/lib/fibsem/imaging 2026-05-01T01:37:24,378 copying fibsem/imaging/drawing.py -> build/lib/fibsem/imaging 2026-05-01T01:37:24,379 copying fibsem/imaging/masks.py -> build/lib/fibsem/imaging 2026-05-01T01:37:24,379 copying fibsem/imaging/spot.py -> build/lib/fibsem/imaging 2026-05-01T01:37:24,380 copying fibsem/imaging/tiled.py -> build/lib/fibsem/imaging 2026-05-01T01:37:24,381 copying fibsem/imaging/utils.py -> build/lib/fibsem/imaging 2026-05-01T01:37:24,383 creating build/lib/fibsem/imaging/tests 2026-05-01T01:37:24,384 copying fibsem/imaging/tests/__init__.py -> build/lib/fibsem/imaging/tests 2026-05-01T01:37:24,386 copying fibsem/imaging/tests/test_drawing_widget.py -> build/lib/fibsem/imaging/tests 2026-05-01T01:37:24,389 creating build/lib/fibsem/microscopes 2026-05-01T01:37:24,390 copying fibsem/microscopes/_stage.py -> build/lib/fibsem/microscopes 2026-05-01T01:37:24,392 copying fibsem/microscopes/notebook.ipynb -> build/lib/fibsem/microscopes 2026-05-01T01:37:24,395 copying fibsem/microscopes/odemis_microscope.py -> build/lib/fibsem/microscopes 2026-05-01T01:37:24,398 copying fibsem/microscopes/simulator.py -> build/lib/fibsem/microscopes 2026-05-01T01:37:24,401 copying fibsem/microscopes/tescan.py -> build/lib/fibsem/microscopes 2026-05-01T01:37:24,405 copying fibsem/microscopes/zeiss.py -> build/lib/fibsem/microscopes 2026-05-01T01:37:24,407 creating build/lib/fibsem/milling 2026-05-01T01:37:24,408 copying fibsem/milling/__init__.py -> build/lib/fibsem/milling 2026-05-01T01:37:24,410 copying fibsem/milling/base.py -> build/lib/fibsem/milling 2026-05-01T01:37:24,413 copying fibsem/milling/config.py -> build/lib/fibsem/milling 2026-05-01T01:37:24,415 copying fibsem/milling/core.py -> build/lib/fibsem/milling 2026-05-01T01:37:24,417 copying fibsem/milling/properties.py -> build/lib/fibsem/milling 2026-05-01T01:37:24,420 copying fibsem/milling/tasks.py -> build/lib/fibsem/milling 2026-05-01T01:37:24,422 creating build/lib/fibsem/milling/patterning 2026-05-01T01:37:24,423 copying fibsem/milling/patterning/__init__.py -> build/lib/fibsem/milling/patterning 2026-05-01T01:37:24,426 copying fibsem/milling/patterning/patterns2.py -> build/lib/fibsem/milling/patterning 2026-05-01T01:37:24,430 copying fibsem/milling/patterning/plotting.py -> build/lib/fibsem/milling/patterning 2026-05-01T01:37:24,433 copying fibsem/milling/patterning/utils.py -> build/lib/fibsem/milling/patterning 2026-05-01T01:37:24,435 creating build/lib/fibsem/milling/strategy 2026-05-01T01:37:24,436 copying fibsem/milling/strategy/__init__.py -> build/lib/fibsem/milling/strategy 2026-05-01T01:37:24,438 copying fibsem/milling/strategy/overtilt.py -> build/lib/fibsem/milling/strategy 2026-05-01T01:37:24,441 copying fibsem/milling/strategy/standard.py -> build/lib/fibsem/milling/strategy 2026-05-01T01:37:24,443 creating build/lib/fibsem/segmentation 2026-05-01T01:37:24,444 copying fibsem/segmentation/README.md -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,447 copying fibsem/segmentation/__init__.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,448 copying fibsem/segmentation/_nnunet.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,451 copying fibsem/segmentation/adaptive_model.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,453 copying fibsem/segmentation/augmentation.ipynb -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,456 copying fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,458 copying fibsem/segmentation/config-autolamella-mega-v4.yml -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,460 copying fibsem/segmentation/config-autolamella-mega-v5.yml -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,462 copying fibsem/segmentation/config-autolamella-waffle4.yml -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,464 copying fibsem/segmentation/config.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,466 copying fibsem/segmentation/config.yml -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,468 copying fibsem/segmentation/dataset.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,470 copying fibsem/segmentation/example.ipynb -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,474 copying fibsem/segmentation/hf_segmentation_model.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,476 copying fibsem/segmentation/huggingface.ipynb -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,479 copying fibsem/segmentation/inference.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,481 copying fibsem/segmentation/model.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,483 copying fibsem/segmentation/nnunet_model.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,486 copying fibsem/segmentation/nnunet_model_v2.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,488 copying fibsem/segmentation/onnx_model.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,491 copying fibsem/segmentation/requirements.txt -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,493 copying fibsem/segmentation/sam_model.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,495 copying fibsem/segmentation/segmentation_config.yaml -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,497 copying fibsem/segmentation/test_image.tif -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,529 copying fibsem/segmentation/train.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,531 copying fibsem/segmentation/utils.py -> build/lib/fibsem/segmentation 2026-05-01T01:37:24,534 creating build/lib/fibsem/segmentation/docs 2026-05-01T01:37:24,535 copying fibsem/segmentation/docs/example_napari.png -> build/lib/fibsem/segmentation/docs 2026-05-01T01:37:24,581 creating build/lib/fibsem/segmentation/docs/imgs/combined 2026-05-01T01:37:24,583 copying fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/lib/fibsem/segmentation/docs/imgs/combined 2026-05-01T01:37:24,605 creating build/lib/fibsem/segmentation/docs/imgs/labelled 2026-05-01T01:37:24,607 copying fibsem/segmentation/docs/imgs/labelled/label.tif -> build/lib/fibsem/segmentation/docs/imgs/labelled 2026-05-01T01:37:24,642 creating build/lib/fibsem/segmentation/docs/imgs/raw 2026-05-01T01:37:24,643 copying fibsem/segmentation/docs/imgs/raw/image.tif -> build/lib/fibsem/segmentation/docs/imgs/raw 2026-05-01T01:37:24,668 creating build/lib/fibsem/segmentation/models 2026-05-01T01:37:24,669 copying fibsem/segmentation/models/.gitkeep -> build/lib/fibsem/segmentation/models 2026-05-01T01:37:24,671 creating build/lib/fibsem/server 2026-05-01T01:37:24,672 copying fibsem/server/GAPS.md -> build/lib/fibsem/server 2026-05-01T01:37:24,674 copying fibsem/server/README.md -> build/lib/fibsem/server 2026-05-01T01:37:24,676 copying fibsem/server/__init__.py -> build/lib/fibsem/server 2026-05-01T01:37:24,678 copying fibsem/server/client.py -> build/lib/fibsem/server 2026-05-01T01:37:24,681 copying fibsem/server/models.py -> build/lib/fibsem/server 2026-05-01T01:37:24,683 copying fibsem/server/server.py -> build/lib/fibsem/server 2026-05-01T01:37:24,685 creating build/lib/fibsem/tools 2026-05-01T01:37:24,686 copying fibsem/tools/_parser.py -> build/lib/fibsem/tools 2026-05-01T01:37:24,689 copying fibsem/tools/_streamlit.py -> build/lib/fibsem/tools 2026-05-01T01:37:24,691 copying fibsem/tools/beam_shift_alignment_test.py -> build/lib/fibsem/tools 2026-05-01T01:37:24,693 copying fibsem/tools/run_manipulator_calibration.py -> build/lib/fibsem/tools 2026-05-01T01:37:24,695 copying fibsem/tools/run_split_dataset.py -> build/lib/fibsem/tools 2026-05-01T01:37:24,697 copying fibsem/tools/telemetry.py -> build/lib/fibsem/tools 2026-05-01T01:37:24,699 creating build/lib/fibsem/ui 2026-05-01T01:37:24,700 copying fibsem/ui/.gitkeep -> build/lib/fibsem/ui 2026-05-01T01:37:24,702 copying fibsem/ui/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,704 copying fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,707 copying fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,709 copying fibsem/ui/FibsemFeatureLabellingUI.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,712 copying fibsem/ui/FibsemImageSettingsWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,715 copying fibsem/ui/FibsemLabellingUI.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,718 copying fibsem/ui/FibsemManipulatorWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,720 copying fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,723 copying fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,725 copying fibsem/ui/FibsemMinimapWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,730 copying fibsem/ui/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,732 copying fibsem/ui/FibsemMovementWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,736 copying fibsem/ui/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,738 copying fibsem/ui/FibsemSpotBurnWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,741 copying fibsem/ui/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,744 copying fibsem/ui/FibsemUI.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,747 copying fibsem/ui/__init__.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,750 copying fibsem/ui/stylesheets.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,753 copying fibsem/ui/utils.py -> build/lib/fibsem/ui 2026-05-01T01:37:24,756 creating build/lib/fibsem/ui/fm/widgets 2026-05-01T01:37:24,757 copying fibsem/ui/fm/widgets/__init__.py -> build/lib/fibsem/ui/fm/widgets 2026-05-01T01:37:24,760 copying fibsem/ui/fm/widgets/display_options_dialog.py -> build/lib/fibsem/ui/fm/widgets 2026-05-01T01:37:24,763 copying fibsem/ui/fm/widgets/minimap_plot_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-05-01T01:37:24,766 copying fibsem/ui/fm/widgets/minimap_plot_widget_example.py -> build/lib/fibsem/ui/fm/widgets 2026-05-01T01:37:24,769 creating build/lib/fibsem/ui/icons 2026-05-01T01:37:24,771 copying fibsem/ui/icons/check.svg -> build/lib/fibsem/ui/icons 2026-05-01T01:37:24,773 copying fibsem/ui/icons/chevron_down.svg -> build/lib/fibsem/ui/icons 2026-05-01T01:37:24,775 copying fibsem/ui/icons/drag_handle.svg -> build/lib/fibsem/ui/icons 2026-05-01T01:37:24,778 copying fibsem/ui/icons/minus.svg -> build/lib/fibsem/ui/icons 2026-05-01T01:37:24,780 copying fibsem/ui/icons/plus.svg -> build/lib/fibsem/ui/icons 2026-05-01T01:37:24,782 creating build/lib/fibsem/ui/napari 2026-05-01T01:37:24,783 copying fibsem/ui/napari/patterns.py -> build/lib/fibsem/ui/napari 2026-05-01T01:37:24,787 copying fibsem/ui/napari/properties.py -> build/lib/fibsem/ui/napari 2026-05-01T01:37:24,789 copying fibsem/ui/napari/utilities.py -> build/lib/fibsem/ui/napari 2026-05-01T01:37:24,792 creating build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,793 copying fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,796 copying fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,799 copying fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,802 copying fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,804 copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,807 copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,810 copying fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,813 copying fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,816 copying fibsem/ui/qtdesigner_files/FibsemSpotBurnWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,818 copying fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,821 copying fibsem/ui/qtdesigner_files/FibsemUI.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,824 copying fibsem/ui/qtdesigner_files/detection_dialog.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,827 copying fibsem/ui/qtdesigner_files/image_viewer.py -> build/lib/fibsem/ui/qtdesigner_files 2026-05-01T01:37:24,832 creating build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,833 copying fibsem/ui/widgets/angle_measure.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,837 copying fibsem/ui/widgets/annotation_pin.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,840 copying fibsem/ui/widgets/autolamella_apply_protocol_dialog.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,844 copying fibsem/ui/widgets/autolamella_create_experiment_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,848 copying fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,852 copying fibsem/ui/widgets/autolamella_generate_report_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,856 copying fibsem/ui/widgets/autolamella_global_task_editor_dialog.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,860 copying fibsem/ui/widgets/autolamella_lamella_protocol_editor.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,865 copying fibsem/ui/widgets/autolamella_load_experiment_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,869 copying fibsem/ui/widgets/autolamella_load_task_protocol_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,873 copying fibsem/ui/widgets/autolamella_overview_image_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,877 copying fibsem/ui/widgets/autolamella_protocol_information_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,881 copying fibsem/ui/widgets/autolamella_task_config_editor.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,885 copying fibsem/ui/widgets/autolamella_task_config_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,889 copying fibsem/ui/widgets/beam_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,893 copying fibsem/ui/widgets/beam_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,896 copying fibsem/ui/widgets/custom_widgets.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,901 copying fibsem/ui/widgets/dataframe_table_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,905 copying fibsem/ui/widgets/detector_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,908 copying fibsem/ui/widgets/drag_distance.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,912 copying fibsem/ui/widgets/dual_beam_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,916 copying fibsem/ui/widgets/fibsem_image_flow_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,919 copying fibsem/ui/widgets/hook_config_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,923 copying fibsem/ui/widgets/hud_ticker.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,926 copying fibsem/ui/widgets/image_annotation_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,928 copying fibsem/ui/widgets/image_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,932 copying fibsem/ui/widgets/lamella_card_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,934 copying fibsem/ui/widgets/lamella_list_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,937 copying fibsem/ui/widgets/lamella_task_image_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,939 copying fibsem/ui/widgets/lamella_workflow_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,942 copying fibsem/ui/widgets/microscope_config_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,945 copying fibsem/ui/widgets/milling_alignment_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,948 copying fibsem/ui/widgets/milling_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,950 copying fibsem/ui/widgets/milling_stage_editor_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,954 copying fibsem/ui/widgets/milling_stage_list_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,957 copying fibsem/ui/widgets/milling_stages_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,960 copying fibsem/ui/widgets/milling_task_acquisition_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,962 copying fibsem/ui/widgets/milling_task_config_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,966 copying fibsem/ui/widgets/milling_task_config_widget2.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,969 copying fibsem/ui/widgets/milling_task_viewer_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,972 copying fibsem/ui/widgets/milling_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,975 copying fibsem/ui/widgets/notifications.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,979 copying fibsem/ui/widgets/overview_acquisition_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,982 copying fibsem/ui/widgets/pattern_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,985 copying fibsem/ui/widgets/preferences_dialog.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,987 copying fibsem/ui/widgets/profile_line.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,990 copying fibsem/ui/widgets/progress_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,993 copying fibsem/ui/widgets/radial_menu.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:24,996 copying fibsem/ui/widgets/reference_image_parameters_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:25,000 copying fibsem/ui/widgets/sample_holder_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:25,003 copying fibsem/ui/widgets/strategy_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:25,006 copying fibsem/ui/widgets/task_history_table_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:25,009 copying fibsem/ui/widgets/workflow_config_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:25,012 copying fibsem/ui/widgets/workflow_info_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:25,015 copying fibsem/ui/widgets/workflow_task_editor_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:25,018 copying fibsem/ui/widgets/workflow_timeline_widget.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:25,022 copying fibsem/ui/widgets/zoom_loupe.py -> build/lib/fibsem/ui/widgets 2026-05-01T01:37:25,024 creating build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,025 copying fibsem/ui/widgets/tests/test-icon-tool-button.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,028 copying fibsem/ui/widgets/tests/test-image-settings-widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,031 copying fibsem/ui/widgets/tests/test-lamella-card.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,034 copying fibsem/ui/widgets/tests/test-lamella-list.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,036 copying fibsem/ui/widgets/tests/test-lamella-workflow.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,039 copying fibsem/ui/widgets/tests/test-progress-bar.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,042 copying fibsem/ui/widgets/tests/test-spinner-icon.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,044 copying fibsem/ui/widgets/tests/test-workflow-config.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,047 copying fibsem/ui/widgets/tests/test_alignment_comparison.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,050 copying fibsem/ui/widgets/tests/test_alignment_plot_v2.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,053 copying fibsem/ui/widgets/tests/test_countdown_progress.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,055 copying fibsem/ui/widgets/tests/test_drag_distance.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,058 copying fibsem/ui/widgets/tests/test_hooks_manual.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,061 copying fibsem/ui/widgets/tests/test_lamella_name_list_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,063 copying fibsem/ui/widgets/tests/test_lamella_task_image_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,066 copying fibsem/ui/widgets/tests/test_milling_settings_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,068 copying fibsem/ui/widgets/tests/test_milling_stage_list.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,071 copying fibsem/ui/widgets/tests/test_milling_stages_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,074 copying fibsem/ui/widgets/tests/test_milling_task_config_widget2.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,077 copying fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,080 copying fibsem/ui/widgets/tests/test_pattern_settings_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,082 copying fibsem/ui/widgets/tests/test_progress_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,085 copying fibsem/ui/widgets/tests/test_radial_menu.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,087 copying fibsem/ui/widgets/tests/test_radial_ruler_demo.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,091 copying fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,093 copying fibsem/ui/widgets/tests/test_toast.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,096 copying fibsem/ui/widgets/tests/test_workflow_timeline_animation.py -> build/lib/fibsem/ui/widgets/tests 2026-05-01T01:37:25,098 creating build/lib/fibsem/util 2026-05-01T01:37:25,100 copying fibsem/util/__init__.py -> build/lib/fibsem/util 2026-05-01T01:37:25,102 copying fibsem/util/draw_numbers.py -> build/lib/fibsem/util 2026-05-01T01:37:25,106 copying fibsem/util/filename.py -> build/lib/fibsem/util 2026-05-01T01:37:25,122 installing to build/bdist.linux-armv7l/wheel 2026-05-01T01:37:25,122 running install 2026-05-01T01:37:25,146 running install_lib 2026-05-01T01:37:25,153 creating build/bdist.linux-armv7l/wheel 2026-05-01T01:37:25,156 creating build/bdist.linux-armv7l/wheel/fibsem 2026-05-01T01:37:25,157 copying build/lib/fibsem/alignment.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,161 copying build/lib/fibsem/microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,166 creating build/bdist.linux-armv7l/wheel/fibsem/microscopes 2026-05-01T01:37:25,167 copying build/lib/fibsem/microscopes/tescan.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:37:25,171 copying build/lib/fibsem/microscopes/simulator.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:37:25,174 copying build/lib/fibsem/microscopes/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:37:25,176 copying build/lib/fibsem/microscopes/zeiss.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:37:25,178 copying build/lib/fibsem/microscopes/odemis_microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:37:25,181 copying build/lib/fibsem/microscopes/_stage.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-05-01T01:37:25,185 creating build/bdist.linux-armv7l/wheel/fibsem/milling 2026-05-01T01:37:25,187 creating build/bdist.linux-armv7l/wheel/fibsem/milling/strategy 2026-05-01T01:37:25,189 copying build/lib/fibsem/milling/strategy/standard.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-05-01T01:37:25,191 copying build/lib/fibsem/milling/strategy/overtilt.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-05-01T01:37:25,194 copying build/lib/fibsem/milling/strategy/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-05-01T01:37:25,196 copying build/lib/fibsem/milling/properties.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:37:25,198 copying build/lib/fibsem/milling/core.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:37:25,201 creating build/bdist.linux-armv7l/wheel/fibsem/milling/patterning 2026-05-01T01:37:25,202 copying build/lib/fibsem/milling/patterning/patterns2.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-05-01T01:37:25,205 copying build/lib/fibsem/milling/patterning/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-05-01T01:37:25,212 copying build/lib/fibsem/milling/patterning/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-05-01T01:37:25,214 copying build/lib/fibsem/milling/patterning/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-05-01T01:37:25,217 copying build/lib/fibsem/milling/base.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:37:25,220 copying build/lib/fibsem/milling/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:37:25,222 copying build/lib/fibsem/milling/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:37:25,224 copying build/lib/fibsem/milling/tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-05-01T01:37:25,227 copying build/lib/fibsem/configuration.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,230 creating build/bdist.linux-armv7l/wheel/fibsem/util 2026-05-01T01:37:25,232 copying build/lib/fibsem/util/draw_numbers.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-05-01T01:37:25,235 copying build/lib/fibsem/util/filename.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-05-01T01:37:25,237 copying build/lib/fibsem/util/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-05-01T01:37:25,239 creating build/bdist.linux-armv7l/wheel/fibsem/detection 2026-05-01T01:37:25,241 copying build/lib/fibsem/detection/config-autolamella-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,243 copying build/lib/fibsem/detection/test_image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,280 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2026-05-01T01:37:25,282 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2026-05-01T01:37:25,283 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:37:25,286 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:37:25,288 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:37:25,290 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:37:25,293 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:37:25,295 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:37:25,297 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:37:25,300 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-05-01T01:37:25,302 copying build/lib/fibsem/detection/test_images/test_needle_mask2.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-05-01T01:37:25,304 copying build/lib/fibsem/detection/test_images/test_needle_mask.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-05-01T01:37:25,306 copying build/lib/fibsem/detection/test_images/test_needle_mask3.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-05-01T01:37:25,309 copying build/lib/fibsem/detection/config-autoliftout-dm-embryo.yml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,310 copying build/lib/fibsem/detection/config-autolamella-waffle-v2.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,312 copying build/lib/fibsem/detection/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,314 copying build/lib/fibsem/detection/config-autolamella-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,316 copying build/lib/fibsem/detection/run_evaluation.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,318 copying build/lib/fibsem/detection/evaluation.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,320 copying build/lib/fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,322 copying build/lib/fibsem/detection/config-autolamella-liftout-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,324 copying build/lib/fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,325 copying build/lib/fibsem/detection/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,327 copying build/lib/fibsem/detection/detection.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,330 copying build/lib/fibsem/detection/config-autolamella-waffle.yml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,332 copying build/lib/fibsem/detection/test_image_2.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-05-01T01:37:25,362 copying build/lib/fibsem/logo.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,364 creating build/bdist.linux-armv7l/wheel/fibsem/chat 2026-05-01T01:37:25,365 copying build/lib/fibsem/chat/main.py -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-05-01T01:37:25,367 copying build/lib/fibsem/chat/.gitignore -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-05-01T01:37:25,369 copying build/lib/fibsem/chat/requirements.txt -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-05-01T01:37:25,370 copying build/lib/fibsem/gis.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,373 copying build/lib/fibsem/acquire.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,375 creating build/bdist.linux-armv7l/wheel/fibsem/server 2026-05-01T01:37:25,376 copying build/lib/fibsem/server/client.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:37:25,379 copying build/lib/fibsem/server/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:37:25,381 copying build/lib/fibsem/server/server.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:37:25,384 copying build/lib/fibsem/server/GAPS.md -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:37:25,386 copying build/lib/fibsem/server/models.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:37:25,388 copying build/lib/fibsem/server/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-05-01T01:37:25,390 copying build/lib/fibsem/conversions.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,393 copying build/lib/fibsem/constants.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,395 creating build/bdist.linux-armv7l/wheel/fibsem/config 2026-05-01T01:37:25,396 copying build/lib/fibsem/config/odemis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:37:25,398 copying build/lib/fibsem/config/tfs-hydra-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:37:25,401 copying build/lib/fibsem/config/tfs-arctis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:37:25,403 copying build/lib/fibsem/config/tfs-aquilos2-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:37:25,405 copying build/lib/fibsem/config/tescan-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:37:25,407 copying build/lib/fibsem/config/sim-arctis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:37:25,409 copying build/lib/fibsem/config/sample-holder.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:37:25,411 copying build/lib/fibsem/config/microscope-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:37:25,413 copying build/lib/fibsem/config/tescan_manipulator.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-05-01T01:37:25,415 copying build/lib/fibsem/movement.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,416 copying build/lib/fibsem/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,419 copying build/lib/fibsem/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,423 creating build/bdist.linux-armv7l/wheel/fibsem/applications 2026-05-01T01:37:25,425 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella 2026-05-01T01:37:25,427 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/compat 2026-05-01T01:37:25,428 copying build/lib/fibsem/applications/autolamella/compat/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/compat 2026-05-01T01:37:25,430 copying build/lib/fibsem/applications/autolamella/compat/odemis.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/compat 2026-05-01T01:37:25,433 copying build/lib/fibsem/applications/autolamella/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-05-01T01:37:25,435 copying build/lib/fibsem/applications/autolamella/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-05-01T01:37:25,437 copying build/lib/fibsem/applications/autolamella/task_manager_queue.md -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-05-01T01:37:25,440 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/ui 2026-05-01T01:37:25,441 copying build/lib/fibsem/applications/autolamella/ui/AutoLamellaUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-05-01T01:37:25,444 copying build/lib/fibsem/applications/autolamella/ui/AutoLamellaMainUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-05-01T01:37:25,447 copying build/lib/fibsem/applications/autolamella/ui/run_ui.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-05-01T01:37:25,448 copying build/lib/fibsem/applications/autolamella/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-05-01T01:37:25,451 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/ui/tests 2026-05-01T01:37:25,452 copying build/lib/fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui/tests 2026-05-01T01:37:25,454 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/protocol 2026-05-01T01:37:25,455 copying build/lib/fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:37:25,457 copying build/lib/fibsem/applications/autolamella/protocol/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:37:25,459 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:25,460 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:25,462 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:25,465 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:25,467 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:25,469 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-05-01T01:37:25,471 copying build/lib/fibsem/applications/autolamella/protocol/constants.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:37:25,473 copying build/lib/fibsem/applications/autolamella/protocol/task-protocol.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:37:25,475 copying build/lib/fibsem/applications/autolamella/protocol/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:37:25,476 copying build/lib/fibsem/applications/autolamella/protocol/legacy.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:37:25,479 copying build/lib/fibsem/applications/autolamella/protocol/validation.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-05-01T01:37:25,482 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/tools 2026-05-01T01:37:25,482 copying build/lib/fibsem/applications/autolamella/tools/data.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:37:25,485 copying build/lib/fibsem/applications/autolamella/tools/stats.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:37:25,487 copying build/lib/fibsem/applications/autolamella/tools/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:37:25,490 copying build/lib/fibsem/applications/autolamella/tools/reporting.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:37:25,492 copying build/lib/fibsem/applications/autolamella/tools/upload_to_hf.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:37:25,494 copying build/lib/fibsem/applications/autolamella/tools/review.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:37:25,496 copying build/lib/fibsem/applications/autolamella/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-05-01T01:37:25,497 copying build/lib/fibsem/applications/autolamella/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-05-01T01:37:25,499 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows 2026-05-01T01:37:25,500 copying build/lib/fibsem/applications/autolamella/workflows/core.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-05-01T01:37:25,503 copying build/lib/fibsem/applications/autolamella/workflows/_default_milling_config.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-05-01T01:37:25,504 copying build/lib/fibsem/applications/autolamella/workflows/ui.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-05-01T01:37:25,507 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:37:25,508 copying build/lib/fibsem/applications/autolamella/workflows/legacy/serial.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:37:25,511 copying build/lib/fibsem/applications/autolamella/workflows/legacy/experimental.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:37:25,513 copying build/lib/fibsem/applications/autolamella/workflows/legacy/autoliftout.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-05-01T01:37:25,517 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,518 copying build/lib/fibsem/applications/autolamella/workflows/tasks/reference_image.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,520 copying build/lib/fibsem/applications/autolamella/workflows/tasks/fiducial.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,522 copying build/lib/fibsem/applications/autolamella/workflows/tasks/undercut.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,524 copying build/lib/fibsem/applications/autolamella/workflows/tasks/queue.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,527 copying build/lib/fibsem/applications/autolamella/workflows/tasks/test_hooks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,529 copying build/lib/fibsem/applications/autolamella/workflows/tasks/select_position.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,531 copying build/lib/fibsem/applications/autolamella/workflows/tasks/basic_milling.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,533 copying build/lib/fibsem/applications/autolamella/workflows/tasks/hooks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,535 copying build/lib/fibsem/applications/autolamella/workflows/tasks/base.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,537 copying build/lib/fibsem/applications/autolamella/workflows/tasks/spot_burn.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,539 copying build/lib/fibsem/applications/autolamella/workflows/tasks/rough.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,541 copying build/lib/fibsem/applications/autolamella/workflows/tasks/manager.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,544 copying build/lib/fibsem/applications/autolamella/workflows/tasks/polishing.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,545 copying build/lib/fibsem/applications/autolamella/workflows/tasks/grid_tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,548 copying build/lib/fibsem/applications/autolamella/workflows/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,550 copying build/lib/fibsem/applications/autolamella/workflows/tasks/trench.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,552 copying build/lib/fibsem/applications/autolamella/workflows/tasks/tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-05-01T01:37:25,554 copying build/lib/fibsem/applications/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications 2026-05-01T01:37:25,555 copying build/lib/fibsem/config.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:25,559 creating build/bdist.linux-armv7l/wheel/fibsem/ui 2026-05-01T01:37:25,560 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,562 copying build/lib/fibsem/ui/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,564 copying build/lib/fibsem/ui/FibsemFeatureLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,567 copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,569 copying build/lib/fibsem/ui/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,572 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,575 creating build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,576 copying build/lib/fibsem/ui/qtdesigner_files/image_viewer.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,579 copying build/lib/fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,581 copying build/lib/fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,583 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,586 copying build/lib/fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,588 copying build/lib/fibsem/ui/qtdesigner_files/FibsemUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,590 copying build/lib/fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,592 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,594 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,596 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,597 copying build/lib/fibsem/ui/qtdesigner_files/detection_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,600 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSpotBurnWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,602 copying build/lib/fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-05-01T01:37:25,604 copying build/lib/fibsem/ui/FibsemUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,606 creating build/bdist.linux-armv7l/wheel/fibsem/ui/icons 2026-05-01T01:37:25,607 copying build/lib/fibsem/ui/icons/check.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-05-01T01:37:25,609 copying build/lib/fibsem/ui/icons/chevron_down.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-05-01T01:37:25,611 copying build/lib/fibsem/ui/icons/drag_handle.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-05-01T01:37:25,613 copying build/lib/fibsem/ui/icons/plus.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-05-01T01:37:25,614 copying build/lib/fibsem/ui/icons/minus.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-05-01T01:37:25,616 copying build/lib/fibsem/ui/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,619 copying build/lib/fibsem/ui/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,622 creating build/bdist.linux-armv7l/wheel/fibsem/ui/widgets 2026-05-01T01:37:25,623 copying build/lib/fibsem/ui/widgets/profile_line.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,625 copying build/lib/fibsem/ui/widgets/autolamella_load_experiment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,628 copying build/lib/fibsem/ui/widgets/workflow_timeline_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,631 copying build/lib/fibsem/ui/widgets/milling_stages_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,634 copying build/lib/fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,637 copying build/lib/fibsem/ui/widgets/sample_holder_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,640 copying build/lib/fibsem/ui/widgets/dual_beam_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,643 copying build/lib/fibsem/ui/widgets/autolamella_overview_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,646 copying build/lib/fibsem/ui/widgets/angle_measure.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,648 copying build/lib/fibsem/ui/widgets/autolamella_global_task_editor_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,651 copying build/lib/fibsem/ui/widgets/milling_task_acquisition_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,654 copying build/lib/fibsem/ui/widgets/radial_menu.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,657 copying build/lib/fibsem/ui/widgets/autolamella_task_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,660 copying build/lib/fibsem/ui/widgets/strategy_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,663 copying build/lib/fibsem/ui/widgets/autolamella_apply_protocol_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,666 copying build/lib/fibsem/ui/widgets/milling_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,669 copying build/lib/fibsem/ui/widgets/autolamella_create_experiment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,672 copying build/lib/fibsem/ui/widgets/milling_task_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,675 copying build/lib/fibsem/ui/widgets/drag_distance.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,678 copying build/lib/fibsem/ui/widgets/workflow_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,681 copying build/lib/fibsem/ui/widgets/autolamella_protocol_information_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,683 copying build/lib/fibsem/ui/widgets/autolamella_lamella_protocol_editor.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,686 copying build/lib/fibsem/ui/widgets/fibsem_image_flow_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,689 copying build/lib/fibsem/ui/widgets/milling_stage_editor_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,692 copying build/lib/fibsem/ui/widgets/progress_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,695 copying build/lib/fibsem/ui/widgets/lamella_workflow_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,698 copying build/lib/fibsem/ui/widgets/workflow_info_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,701 copying build/lib/fibsem/ui/widgets/detector_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,704 copying build/lib/fibsem/ui/widgets/beam_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,708 copying build/lib/fibsem/ui/widgets/microscope_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,711 copying build/lib/fibsem/ui/widgets/preferences_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,714 copying build/lib/fibsem/ui/widgets/autolamella_generate_report_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,717 copying build/lib/fibsem/ui/widgets/zoom_loupe.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,721 copying build/lib/fibsem/ui/widgets/lamella_task_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,724 copying build/lib/fibsem/ui/widgets/custom_widgets.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,728 copying build/lib/fibsem/ui/widgets/dataframe_table_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,731 copying build/lib/fibsem/ui/widgets/overview_acquisition_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,734 copying build/lib/fibsem/ui/widgets/autolamella_task_config_editor.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,738 copying build/lib/fibsem/ui/widgets/milling_task_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,741 copying build/lib/fibsem/ui/widgets/hook_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,745 copying build/lib/fibsem/ui/widgets/autolamella_load_task_protocol_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,748 copying build/lib/fibsem/ui/widgets/image_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,751 copying build/lib/fibsem/ui/widgets/beam_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,754 copying build/lib/fibsem/ui/widgets/reference_image_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,758 copying build/lib/fibsem/ui/widgets/pattern_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,761 copying build/lib/fibsem/ui/widgets/milling_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,764 copying build/lib/fibsem/ui/widgets/image_annotation_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,768 copying build/lib/fibsem/ui/widgets/workflow_task_editor_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,771 copying build/lib/fibsem/ui/widgets/lamella_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,774 copying build/lib/fibsem/ui/widgets/hud_ticker.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,778 creating build/bdist.linux-armv7l/wheel/fibsem/ui/widgets/tests 2026-05-01T01:37:25,780 copying build/lib/fibsem/ui/widgets/tests/test-lamella-list.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,783 copying build/lib/fibsem/ui/widgets/tests/test-progress-bar.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,786 copying build/lib/fibsem/ui/widgets/tests/test_pattern_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,789 copying build/lib/fibsem/ui/widgets/tests/test_lamella_name_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,792 copying build/lib/fibsem/ui/widgets/tests/test-spinner-icon.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,794 copying build/lib/fibsem/ui/widgets/tests/test-icon-tool-button.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,797 copying build/lib/fibsem/ui/widgets/tests/test-image-settings-widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,800 copying build/lib/fibsem/ui/widgets/tests/test_radial_ruler_demo.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,803 copying build/lib/fibsem/ui/widgets/tests/test_workflow_timeline_animation.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,806 copying build/lib/fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,809 copying build/lib/fibsem/ui/widgets/tests/test_milling_task_config_widget2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,812 copying build/lib/fibsem/ui/widgets/tests/test_alignment_plot_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,815 copying build/lib/fibsem/ui/widgets/tests/test_drag_distance.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,818 copying build/lib/fibsem/ui/widgets/tests/test_alignment_comparison.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,821 copying build/lib/fibsem/ui/widgets/tests/test_radial_menu.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,824 copying build/lib/fibsem/ui/widgets/tests/test_milling_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,826 copying build/lib/fibsem/ui/widgets/tests/test_toast.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,829 copying build/lib/fibsem/ui/widgets/tests/test_milling_stages_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,831 copying build/lib/fibsem/ui/widgets/tests/test-workflow-config.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,833 copying build/lib/fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,835 copying build/lib/fibsem/ui/widgets/tests/test_milling_stage_list.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,837 copying build/lib/fibsem/ui/widgets/tests/test_progress_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,839 copying build/lib/fibsem/ui/widgets/tests/test-lamella-card.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,841 copying build/lib/fibsem/ui/widgets/tests/test-lamella-workflow.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,844 copying build/lib/fibsem/ui/widgets/tests/test_lamella_task_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,845 copying build/lib/fibsem/ui/widgets/tests/test_countdown_progress.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,847 copying build/lib/fibsem/ui/widgets/tests/test_hooks_manual.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-05-01T01:37:25,850 copying build/lib/fibsem/ui/widgets/milling_alignment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,852 copying build/lib/fibsem/ui/widgets/milling_stage_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,855 copying build/lib/fibsem/ui/widgets/annotation_pin.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,857 copying build/lib/fibsem/ui/widgets/lamella_card_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,859 copying build/lib/fibsem/ui/widgets/milling_task_config_widget2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,861 copying build/lib/fibsem/ui/widgets/notifications.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,864 copying build/lib/fibsem/ui/widgets/task_history_table_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-05-01T01:37:25,866 copying build/lib/fibsem/ui/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,869 copying build/lib/fibsem/ui/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,871 copying build/lib/fibsem/ui/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,874 copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,875 copying build/lib/fibsem/ui/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,878 copying build/lib/fibsem/ui/stylesheets.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,881 copying build/lib/fibsem/ui/FibsemImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,884 copying build/lib/fibsem/ui/FibsemSpotBurnWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,886 copying build/lib/fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,889 creating build/bdist.linux-armv7l/wheel/fibsem/ui/napari 2026-05-01T01:37:25,890 copying build/lib/fibsem/ui/napari/properties.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-05-01T01:37:25,893 copying build/lib/fibsem/ui/napari/utilities.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-05-01T01:37:25,896 copying build/lib/fibsem/ui/napari/patterns.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-05-01T01:37:25,898 copying build/lib/fibsem/ui/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,901 creating build/bdist.linux-armv7l/wheel/fibsem/ui/fm 2026-05-01T01:37:25,903 creating build/bdist.linux-armv7l/wheel/fibsem/ui/fm/widgets 2026-05-01T01:37:25,904 copying build/lib/fibsem/ui/fm/widgets/display_options_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-05-01T01:37:25,906 copying build/lib/fibsem/ui/fm/widgets/minimap_plot_widget_example.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-05-01T01:37:25,908 copying build/lib/fibsem/ui/fm/widgets/minimap_plot_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-05-01T01:37:25,911 copying build/lib/fibsem/ui/fm/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-05-01T01:37:25,913 copying build/lib/fibsem/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-05-01T01:37:25,915 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation 2026-05-01T01:37:25,916 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:25,918 copying build/lib/fibsem/segmentation/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:25,921 copying build/lib/fibsem/segmentation/augmentation.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:25,923 copying build/lib/fibsem/segmentation/huggingface.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:25,926 copying build/lib/fibsem/segmentation/model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:25,928 copying build/lib/fibsem/segmentation/nnunet_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:25,930 copying build/lib/fibsem/segmentation/segmentation_config.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:25,932 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs 2026-05-01T01:37:25,934 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs 2026-05-01T01:37:25,935 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled 2026-05-01T01:37:25,937 copying build/lib/fibsem/segmentation/docs/imgs/labelled/label.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/labelled 2026-05-01T01:37:25,963 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined 2026-05-01T01:37:25,965 copying build/lib/fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/combined 2026-05-01T01:37:25,988 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw 2026-05-01T01:37:25,989 copying build/lib/fibsem/segmentation/docs/imgs/raw/image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/raw 2026-05-01T01:37:26,012 copying build/lib/fibsem/segmentation/docs/example_napari.png -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs 2026-05-01T01:37:26,060 copying build/lib/fibsem/segmentation/test_image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,082 copying build/lib/fibsem/segmentation/config.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,084 copying build/lib/fibsem/segmentation/onnx_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,087 copying build/lib/fibsem/segmentation/adaptive_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,088 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,090 copying build/lib/fibsem/segmentation/hf_segmentation_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,092 copying build/lib/fibsem/segmentation/sam_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,094 copying build/lib/fibsem/segmentation/config-autolamella-waffle4.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,095 copying build/lib/fibsem/segmentation/inference.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,097 copying build/lib/fibsem/segmentation/train.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,099 copying build/lib/fibsem/segmentation/nnunet_model_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,101 copying build/lib/fibsem/segmentation/example.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,104 copying build/lib/fibsem/segmentation/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,107 copying build/lib/fibsem/segmentation/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,109 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/models 2026-05-01T01:37:26,111 copying build/lib/fibsem/segmentation/models/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/models 2026-05-01T01:37:26,113 copying build/lib/fibsem/segmentation/dataset.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,115 copying build/lib/fibsem/segmentation/config-autolamella-mega-v5.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,117 copying build/lib/fibsem/segmentation/_nnunet.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,120 copying build/lib/fibsem/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,122 copying build/lib/fibsem/segmentation/requirements.txt -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-05-01T01:37:26,124 creating build/bdist.linux-armv7l/wheel/fibsem/correlation 2026-05-01T01:37:26,126 copying build/lib/fibsem/correlation/app.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:37:26,130 copying build/lib/fibsem/correlation/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:37:26,133 copying build/lib/fibsem/correlation/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:37:26,135 copying build/lib/fibsem/correlation/correlation_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:37:26,138 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/pyto 2026-05-01T01:37:26,140 copying build/lib/fibsem/correlation/pyto/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:37:26,142 copying build/lib/fibsem/correlation/pyto/attributes.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:37:26,144 copying build/lib/fibsem/correlation/pyto/points.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:37:26,146 copying build/lib/fibsem/correlation/pyto/rigid_3d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:37:26,150 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/pyto/test 2026-05-01T01:37:26,151 copying build/lib/fibsem/correlation/pyto/test/test_affine_2d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-05-01T01:37:26,154 copying build/lib/fibsem/correlation/pyto/test/test_affine.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-05-01T01:37:26,157 copying build/lib/fibsem/correlation/pyto/test/test_rigid_3d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-05-01T01:37:26,161 copying build/lib/fibsem/correlation/pyto/affine_2d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:37:26,163 copying build/lib/fibsem/correlation/pyto/common.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:37:26,166 copying build/lib/fibsem/correlation/pyto/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:37:26,168 copying build/lib/fibsem/correlation/pyto/affine.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-05-01T01:37:26,172 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/ui 2026-05-01T01:37:26,174 copying build/lib/fibsem/correlation/ui/fm_import_wizard.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui 2026-05-01T01:37:26,176 copying build/lib/fibsem/correlation/ui/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui 2026-05-01T01:37:26,179 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/ui/qt 2026-05-01T01:37:26,180 copying build/lib/fibsem/correlation/ui/qt/tdct_fm_import_wizard.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/qt 2026-05-01T01:37:26,183 copying build/lib/fibsem/correlation/ui/qt/tdct_main.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/qt 2026-05-01T01:37:26,186 copying build/lib/fibsem/correlation/ui/pandas_table.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui 2026-05-01T01:37:26,188 copying build/lib/fibsem/correlation/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui 2026-05-01T01:37:26,191 copying build/lib/fibsem/correlation/io.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:37:26,193 copying build/lib/fibsem/correlation/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-05-01T01:37:26,196 creating build/bdist.linux-armv7l/wheel/fibsem/tools 2026-05-01T01:37:26,197 copying build/lib/fibsem/tools/_streamlit.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:37:26,199 copying build/lib/fibsem/tools/telemetry.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:37:26,202 copying build/lib/fibsem/tools/_parser.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:37:26,204 copying build/lib/fibsem/tools/run_split_dataset.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:37:26,206 copying build/lib/fibsem/tools/beam_shift_alignment_test.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:37:26,208 copying build/lib/fibsem/tools/run_manipulator_calibration.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-05-01T01:37:26,210 copying build/lib/fibsem/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:26,213 copying build/lib/fibsem/calibration.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:26,216 creating build/bdist.linux-armv7l/wheel/fibsem/imaging 2026-05-01T01:37:26,218 copying build/lib/fibsem/imaging/tiled.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:37:26,221 copying build/lib/fibsem/imaging/masks.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:37:26,223 copying build/lib/fibsem/imaging/spot.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:37:26,225 copying build/lib/fibsem/imaging/autogamma.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:37:26,228 copying build/lib/fibsem/imaging/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:37:26,230 copying build/lib/fibsem/imaging/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:37:26,232 copying build/lib/fibsem/imaging/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:37:26,235 creating build/bdist.linux-armv7l/wheel/fibsem/imaging/tests 2026-05-01T01:37:26,236 copying build/lib/fibsem/imaging/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging/tests 2026-05-01T01:37:26,238 copying build/lib/fibsem/imaging/tests/test_drawing_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging/tests 2026-05-01T01:37:26,240 copying build/lib/fibsem/imaging/drawing.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-05-01T01:37:26,243 copying build/lib/fibsem/transformations.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:26,245 copying build/lib/fibsem/validation.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-05-01T01:37:26,247 running install_egg_info 2026-05-01T01:37:26,254 Copying fibsem.egg-info to build/bdist.linux-armv7l/wheel/./fibsem-0.5.0-py3.11.egg-info 2026-05-01T01:37:26,266 running install_scripts 2026-05-01T01:37:26,278 creating build/bdist.linux-armv7l/wheel/fibsem-0.5.0.dist-info/WHEEL 2026-05-01T01:37:26,281 creating '/tmp/pip-wheel-swq0hrpf/.tmp-sujl2uy8/fibsem-0.5.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-01T01:37:26,283 adding 'fibsem/__init__.py' 2026-05-01T01:37:26,286 adding 'fibsem/acquire.py' 2026-05-01T01:37:26,291 adding 'fibsem/alignment.py' 2026-05-01T01:37:26,294 adding 'fibsem/calibration.py' 2026-05-01T01:37:26,296 adding 'fibsem/config.py' 2026-05-01T01:37:26,298 adding 'fibsem/configuration.py' 2026-05-01T01:37:26,300 adding 'fibsem/constants.py' 2026-05-01T01:37:26,302 adding 'fibsem/conversions.py' 2026-05-01T01:37:26,304 adding 'fibsem/gis.py' 2026-05-01T01:37:26,306 adding 'fibsem/logo.py' 2026-05-01T01:37:26,323 adding 'fibsem/microscope.py' 2026-05-01T01:37:26,326 adding 'fibsem/movement.py' 2026-05-01T01:37:26,336 adding 'fibsem/structures.py' 2026-05-01T01:37:26,339 adding 'fibsem/transformations.py' 2026-05-01T01:37:26,342 adding 'fibsem/utils.py' 2026-05-01T01:37:26,344 adding 'fibsem/validation.py' 2026-05-01T01:37:26,346 adding 'fibsem/applications/__init__.py' 2026-05-01T01:37:26,348 adding 'fibsem/applications/autolamella/__init__.py' 2026-05-01T01:37:26,349 adding 'fibsem/applications/autolamella/config.py' 2026-05-01T01:37:26,355 adding 'fibsem/applications/autolamella/structures.py' 2026-05-01T01:37:26,358 adding 'fibsem/applications/autolamella/task_manager_queue.md' 2026-05-01T01:37:26,361 adding 'fibsem/applications/autolamella/compat/notebook.ipynb' 2026-05-01T01:37:26,363 adding 'fibsem/applications/autolamella/compat/odemis.py' 2026-05-01T01:37:26,365 adding 'fibsem/applications/autolamella/protocol/.gitkeep' 2026-05-01T01:37:26,367 adding 'fibsem/applications/autolamella/protocol/__init__.py' 2026-05-01T01:37:26,368 adding 'fibsem/applications/autolamella/protocol/constants.py' 2026-05-01T01:37:26,370 adding 'fibsem/applications/autolamella/protocol/legacy.py' 2026-05-01T01:37:26,372 adding 'fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml' 2026-05-01T01:37:26,374 adding 'fibsem/applications/autolamella/protocol/task-protocol.yaml' 2026-05-01T01:37:26,376 adding 'fibsem/applications/autolamella/protocol/validation.py' 2026-05-01T01:37:26,379 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml' 2026-05-01T01:37:26,380 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml' 2026-05-01T01:37:26,382 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml' 2026-05-01T01:37:26,384 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml' 2026-05-01T01:37:26,386 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml' 2026-05-01T01:37:26,388 adding 'fibsem/applications/autolamella/tools/__init__.py' 2026-05-01T01:37:26,391 adding 'fibsem/applications/autolamella/tools/data.py' 2026-05-01T01:37:26,393 adding 'fibsem/applications/autolamella/tools/notebook.ipynb' 2026-05-01T01:37:26,397 adding 'fibsem/applications/autolamella/tools/reporting.py' 2026-05-01T01:37:26,399 adding 'fibsem/applications/autolamella/tools/review.py' 2026-05-01T01:37:26,402 adding 'fibsem/applications/autolamella/tools/stats.py' 2026-05-01T01:37:26,404 adding 'fibsem/applications/autolamella/tools/upload_to_hf.py' 2026-05-01T01:37:26,412 adding 'fibsem/applications/autolamella/ui/AutoLamellaMainUI.py' 2026-05-01T01:37:26,420 adding 'fibsem/applications/autolamella/ui/AutoLamellaUI.py' 2026-05-01T01:37:26,423 adding 'fibsem/applications/autolamella/ui/__init__.py' 2026-05-01T01:37:26,424 adding 'fibsem/applications/autolamella/ui/run_ui.py' 2026-05-01T01:37:26,426 adding 'fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py' 2026-05-01T01:37:26,428 adding 'fibsem/applications/autolamella/workflows/_default_milling_config.py' 2026-05-01T01:37:26,430 adding 'fibsem/applications/autolamella/workflows/core.py' 2026-05-01T01:37:26,432 adding 'fibsem/applications/autolamella/workflows/ui.py' 2026-05-01T01:37:26,438 adding 'fibsem/applications/autolamella/workflows/legacy/autoliftout.py' 2026-05-01T01:37:26,441 adding 'fibsem/applications/autolamella/workflows/legacy/experimental.py' 2026-05-01T01:37:26,445 adding 'fibsem/applications/autolamella/workflows/legacy/serial.py' 2026-05-01T01:37:26,448 adding 'fibsem/applications/autolamella/workflows/tasks/__init__.py' 2026-05-01T01:37:26,451 adding 'fibsem/applications/autolamella/workflows/tasks/base.py' 2026-05-01T01:37:26,453 adding 'fibsem/applications/autolamella/workflows/tasks/basic_milling.py' 2026-05-01T01:37:26,455 adding 'fibsem/applications/autolamella/workflows/tasks/fiducial.py' 2026-05-01T01:37:26,457 adding 'fibsem/applications/autolamella/workflows/tasks/grid_tasks.py' 2026-05-01T01:37:26,459 adding 'fibsem/applications/autolamella/workflows/tasks/hooks.py' 2026-05-01T01:37:26,461 adding 'fibsem/applications/autolamella/workflows/tasks/manager.py' 2026-05-01T01:37:26,463 adding 'fibsem/applications/autolamella/workflows/tasks/polishing.py' 2026-05-01T01:37:26,465 adding 'fibsem/applications/autolamella/workflows/tasks/queue.py' 2026-05-01T01:37:26,466 adding 'fibsem/applications/autolamella/workflows/tasks/reference_image.py' 2026-05-01T01:37:26,468 adding 'fibsem/applications/autolamella/workflows/tasks/rough.py' 2026-05-01T01:37:26,470 adding 'fibsem/applications/autolamella/workflows/tasks/select_position.py' 2026-05-01T01:37:26,472 adding 'fibsem/applications/autolamella/workflows/tasks/spot_burn.py' 2026-05-01T01:37:26,474 adding 'fibsem/applications/autolamella/workflows/tasks/tasks.py' 2026-05-01T01:37:26,476 adding 'fibsem/applications/autolamella/workflows/tasks/test_hooks.py' 2026-05-01T01:37:26,478 adding 'fibsem/applications/autolamella/workflows/tasks/trench.py' 2026-05-01T01:37:26,480 adding 'fibsem/applications/autolamella/workflows/tasks/undercut.py' 2026-05-01T01:37:26,482 adding 'fibsem/chat/.gitignore' 2026-05-01T01:37:26,484 adding 'fibsem/chat/main.py' 2026-05-01T01:37:26,485 adding 'fibsem/chat/requirements.txt' 2026-05-01T01:37:26,488 adding 'fibsem/config/microscope-configuration.yaml' 2026-05-01T01:37:26,490 adding 'fibsem/config/odemis-configuration.yaml' 2026-05-01T01:37:26,491 adding 'fibsem/config/sample-holder.yaml' 2026-05-01T01:37:26,493 adding 'fibsem/config/sim-arctis-configuration.yaml' 2026-05-01T01:37:26,495 adding 'fibsem/config/tescan-configuration.yaml' 2026-05-01T01:37:26,497 adding 'fibsem/config/tescan_manipulator.yaml' 2026-05-01T01:37:26,499 adding 'fibsem/config/tfs-aquilos2-configuration.yaml' 2026-05-01T01:37:26,501 adding 'fibsem/config/tfs-arctis-configuration.yaml' 2026-05-01T01:37:26,503 adding 'fibsem/config/tfs-hydra-configuration.yaml' 2026-05-01T01:37:26,505 adding 'fibsem/correlation/README.md' 2026-05-01T01:37:26,506 adding 'fibsem/correlation/__init__.py' 2026-05-01T01:37:26,514 adding 'fibsem/correlation/app.py' 2026-05-01T01:37:26,517 adding 'fibsem/correlation/correlation_v2.py' 2026-05-01T01:37:26,519 adding 'fibsem/correlation/io.py' 2026-05-01T01:37:26,523 adding 'fibsem/correlation/util.py' 2026-05-01T01:37:26,525 adding 'fibsem/correlation/pyto/__init__.py' 2026-05-01T01:37:26,530 adding 'fibsem/correlation/pyto/affine.py' 2026-05-01T01:37:26,534 adding 'fibsem/correlation/pyto/affine_2d.py' 2026-05-01T01:37:26,535 adding 'fibsem/correlation/pyto/attributes.py' 2026-05-01T01:37:26,538 adding 'fibsem/correlation/pyto/common.py' 2026-05-01T01:37:26,540 adding 'fibsem/correlation/pyto/points.py' 2026-05-01T01:37:26,546 adding 'fibsem/correlation/pyto/rigid_3d.py' 2026-05-01T01:37:26,548 adding 'fibsem/correlation/pyto/util.py' 2026-05-01T01:37:26,551 adding 'fibsem/correlation/pyto/test/test_affine.py' 2026-05-01T01:37:26,554 adding 'fibsem/correlation/pyto/test/test_affine_2d.py' 2026-05-01T01:37:26,558 adding 'fibsem/correlation/pyto/test/test_rigid_3d.py' 2026-05-01T01:37:26,560 adding 'fibsem/correlation/ui/__init__.py' 2026-05-01T01:37:26,562 adding 'fibsem/correlation/ui/config.py' 2026-05-01T01:37:26,564 adding 'fibsem/correlation/ui/fm_import_wizard.py' 2026-05-01T01:37:26,566 adding 'fibsem/correlation/ui/pandas_table.py' 2026-05-01T01:37:26,569 adding 'fibsem/correlation/ui/qt/tdct_fm_import_wizard.py' 2026-05-01T01:37:26,572 adding 'fibsem/correlation/ui/qt/tdct_main.py' 2026-05-01T01:37:26,574 adding 'fibsem/detection/__init__.py' 2026-05-01T01:37:26,576 adding 'fibsem/detection/config-autolamella-liftout-hf-mega.yaml' 2026-05-01T01:37:26,577 adding 'fibsem/detection/config-autolamella-liftout.yaml' 2026-05-01T01:37:26,579 adding 'fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml' 2026-05-01T01:37:26,580 adding 'fibsem/detection/config-autolamella-serial-liftout.yaml' 2026-05-01T01:37:26,581 adding 'fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml' 2026-05-01T01:37:26,583 adding 'fibsem/detection/config-autolamella-waffle-v2.yaml' 2026-05-01T01:37:26,584 adding 'fibsem/detection/config-autolamella-waffle.yml' 2026-05-01T01:37:26,585 adding 'fibsem/detection/config-autoliftout-dm-embryo.yml' 2026-05-01T01:37:26,591 adding 'fibsem/detection/detection.py' 2026-05-01T01:37:26,593 adding 'fibsem/detection/evaluation.py' 2026-05-01T01:37:26,597 adding 'fibsem/detection/run_evaluation.py' 2026-05-01T01:37:27,024 adding 'fibsem/detection/test_image.tif' 2026-05-01T01:37:27,323 adding 'fibsem/detection/test_image_2.tif' 2026-05-01T01:37:27,335 adding 'fibsem/detection/utils.py' 2026-05-01T01:37:27,337 adding 'fibsem/detection/test_images/test_needle_mask.tif' 2026-05-01T01:37:27,339 adding 'fibsem/detection/test_images/test_needle_mask2.tif' 2026-05-01T01:37:27,340 adding 'fibsem/detection/test_images/test_needle_mask3.tif' 2026-05-01T01:37:27,344 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_00.tif' 2026-05-01T01:37:27,346 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_01.tif' 2026-05-01T01:37:27,349 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_02.tif' 2026-05-01T01:37:27,351 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_03.tif' 2026-05-01T01:37:27,353 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_04.tif' 2026-05-01T01:37:27,356 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_05.tif' 2026-05-01T01:37:27,358 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_06.tif' 2026-05-01T01:37:27,360 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_07.tif' 2026-05-01T01:37:27,362 adding 'fibsem/imaging/.gitkeep' 2026-05-01T01:37:27,364 adding 'fibsem/imaging/__init__.py' 2026-05-01T01:37:27,365 adding 'fibsem/imaging/autogamma.py' 2026-05-01T01:37:27,367 adding 'fibsem/imaging/drawing.py' 2026-05-01T01:37:27,369 adding 'fibsem/imaging/masks.py' 2026-05-01T01:37:27,370 adding 'fibsem/imaging/spot.py' 2026-05-01T01:37:27,375 adding 'fibsem/imaging/tiled.py' 2026-05-01T01:37:27,377 adding 'fibsem/imaging/utils.py' 2026-05-01T01:37:27,379 adding 'fibsem/imaging/tests/__init__.py' 2026-05-01T01:37:27,380 adding 'fibsem/imaging/tests/test_drawing_widget.py' 2026-05-01T01:37:27,382 adding 'fibsem/microscopes/_stage.py' 2026-05-01T01:37:27,384 adding 'fibsem/microscopes/notebook.ipynb' 2026-05-01T01:37:27,388 adding 'fibsem/microscopes/odemis_microscope.py' 2026-05-01T01:37:27,393 adding 'fibsem/microscopes/simulator.py' 2026-05-01T01:37:27,402 adding 'fibsem/microscopes/tescan.py' 2026-05-01T01:37:27,403 adding 'fibsem/microscopes/zeiss.py' 2026-05-01T01:37:27,405 adding 'fibsem/milling/__init__.py' 2026-05-01T01:37:27,407 adding 'fibsem/milling/base.py' 2026-05-01T01:37:27,408 adding 'fibsem/milling/config.py' 2026-05-01T01:37:27,409 adding 'fibsem/milling/core.py' 2026-05-01T01:37:27,410 adding 'fibsem/milling/properties.py' 2026-05-01T01:37:27,413 adding 'fibsem/milling/tasks.py' 2026-05-01T01:37:27,415 adding 'fibsem/milling/patterning/__init__.py' 2026-05-01T01:37:27,420 adding 'fibsem/milling/patterning/patterns2.py' 2026-05-01T01:37:27,424 adding 'fibsem/milling/patterning/plotting.py' 2026-05-01T01:37:27,426 adding 'fibsem/milling/patterning/utils.py' 2026-05-01T01:37:27,428 adding 'fibsem/milling/strategy/__init__.py' 2026-05-01T01:37:27,429 adding 'fibsem/milling/strategy/overtilt.py' 2026-05-01T01:37:27,430 adding 'fibsem/milling/strategy/standard.py' 2026-05-01T01:37:27,433 adding 'fibsem/segmentation/README.md' 2026-05-01T01:37:27,434 adding 'fibsem/segmentation/__init__.py' 2026-05-01T01:37:27,436 adding 'fibsem/segmentation/_nnunet.py' 2026-05-01T01:37:27,438 adding 'fibsem/segmentation/adaptive_model.py' 2026-05-01T01:37:27,439 adding 'fibsem/segmentation/augmentation.ipynb' 2026-05-01T01:37:27,440 adding 'fibsem/segmentation/config-autolamella-mega-v4-xl.yml' 2026-05-01T01:37:27,442 adding 'fibsem/segmentation/config-autolamella-mega-v4.yml' 2026-05-01T01:37:27,443 adding 'fibsem/segmentation/config-autolamella-mega-v5.yml' 2026-05-01T01:37:27,444 adding 'fibsem/segmentation/config-autolamella-waffle4.yml' 2026-05-01T01:37:27,445 adding 'fibsem/segmentation/config.py' 2026-05-01T01:37:27,446 adding 'fibsem/segmentation/config.yml' 2026-05-01T01:37:27,448 adding 'fibsem/segmentation/dataset.py' 2026-05-01T01:37:27,459 adding 'fibsem/segmentation/example.ipynb' 2026-05-01T01:37:27,461 adding 'fibsem/segmentation/hf_segmentation_model.py' 2026-05-01T01:37:27,463 adding 'fibsem/segmentation/huggingface.ipynb' 2026-05-01T01:37:27,464 adding 'fibsem/segmentation/inference.py' 2026-05-01T01:37:27,466 adding 'fibsem/segmentation/model.py' 2026-05-01T01:37:27,467 adding 'fibsem/segmentation/nnunet_model.py' 2026-05-01T01:37:27,469 adding 'fibsem/segmentation/nnunet_model_v2.py' 2026-05-01T01:37:27,471 adding 'fibsem/segmentation/onnx_model.py' 2026-05-01T01:37:27,472 adding 'fibsem/segmentation/requirements.txt' 2026-05-01T01:37:27,473 adding 'fibsem/segmentation/sam_model.py' 2026-05-01T01:37:27,475 adding 'fibsem/segmentation/segmentation_config.yaml' 2026-05-01T01:37:27,624 adding 'fibsem/segmentation/test_image.tif' 2026-05-01T01:37:27,635 adding 'fibsem/segmentation/train.py' 2026-05-01T01:37:27,637 adding 'fibsem/segmentation/utils.py' 2026-05-01T01:37:27,995 adding 'fibsem/segmentation/docs/example_napari.png' 2026-05-01T01:37:28,155 adding 'fibsem/segmentation/docs/imgs/combined/combined.jpg' 2026-05-01T01:37:28,206 adding 'fibsem/segmentation/docs/imgs/labelled/label.tif' 2026-05-01T01:37:28,369 adding 'fibsem/segmentation/docs/imgs/raw/image.tif' 2026-05-01T01:37:28,379 adding 'fibsem/segmentation/models/.gitkeep' 2026-05-01T01:37:28,381 adding 'fibsem/server/GAPS.md' 2026-05-01T01:37:28,383 adding 'fibsem/server/README.md' 2026-05-01T01:37:28,384 adding 'fibsem/server/__init__.py' 2026-05-01T01:37:28,386 adding 'fibsem/server/client.py' 2026-05-01T01:37:28,387 adding 'fibsem/server/models.py' 2026-05-01T01:37:28,389 adding 'fibsem/server/server.py' 2026-05-01T01:37:28,391 adding 'fibsem/tools/_parser.py' 2026-05-01T01:37:28,393 adding 'fibsem/tools/_streamlit.py' 2026-05-01T01:37:28,394 adding 'fibsem/tools/beam_shift_alignment_test.py' 2026-05-01T01:37:28,395 adding 'fibsem/tools/run_manipulator_calibration.py' 2026-05-01T01:37:28,396 adding 'fibsem/tools/run_split_dataset.py' 2026-05-01T01:37:28,398 adding 'fibsem/tools/telemetry.py' 2026-05-01T01:37:28,400 adding 'fibsem/ui/.gitkeep' 2026-05-01T01:37:28,401 adding 'fibsem/ui/FibsemCryoDepositionWidget.py' 2026-05-01T01:37:28,403 adding 'fibsem/ui/FibsemCryoDepositionWidget_qt.py' 2026-05-01T01:37:28,405 adding 'fibsem/ui/FibsemEmbeddedDetectionWidget.py' 2026-05-01T01:37:28,407 adding 'fibsem/ui/FibsemFeatureLabellingUI.py' 2026-05-01T01:37:28,411 adding 'fibsem/ui/FibsemImageSettingsWidget.py' 2026-05-01T01:37:28,414 adding 'fibsem/ui/FibsemLabellingUI.py' 2026-05-01T01:37:28,416 adding 'fibsem/ui/FibsemManipulatorWidget.py' 2026-05-01T01:37:28,417 adding 'fibsem/ui/FibsemMicroscopeConfigurationWidget.py' 2026-05-01T01:37:28,419 adding 'fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py' 2026-05-01T01:37:28,427 adding 'fibsem/ui/FibsemMinimapWidget.py' 2026-05-01T01:37:28,429 adding 'fibsem/ui/FibsemModelTrainingWidget.py' 2026-05-01T01:37:28,432 adding 'fibsem/ui/FibsemMovementWidget.py' 2026-05-01T01:37:28,434 adding 'fibsem/ui/FibsemSegmentationModelWidget.py' 2026-05-01T01:37:28,436 adding 'fibsem/ui/FibsemSpotBurnWidget.py' 2026-05-01T01:37:28,437 adding 'fibsem/ui/FibsemSystemSetupWidget.py' 2026-05-01T01:37:28,439 adding 'fibsem/ui/FibsemUI.py' 2026-05-01T01:37:28,440 adding 'fibsem/ui/__init__.py' 2026-05-01T01:37:28,442 adding 'fibsem/ui/stylesheets.py' 2026-05-01T01:37:28,444 adding 'fibsem/ui/utils.py' 2026-05-01T01:37:28,446 adding 'fibsem/ui/fm/widgets/__init__.py' 2026-05-01T01:37:28,447 adding 'fibsem/ui/fm/widgets/display_options_dialog.py' 2026-05-01T01:37:28,452 adding 'fibsem/ui/fm/widgets/minimap_plot_widget.py' 2026-05-01T01:37:28,454 adding 'fibsem/ui/fm/widgets/minimap_plot_widget_example.py' 2026-05-01T01:37:28,455 adding 'fibsem/ui/icons/check.svg' 2026-05-01T01:37:28,457 adding 'fibsem/ui/icons/chevron_down.svg' 2026-05-01T01:37:28,458 adding 'fibsem/ui/icons/drag_handle.svg' 2026-05-01T01:37:28,459 adding 'fibsem/ui/icons/minus.svg' 2026-05-01T01:37:28,460 adding 'fibsem/ui/icons/plus.svg' 2026-05-01T01:37:28,464 adding 'fibsem/ui/napari/patterns.py' 2026-05-01T01:37:28,466 adding 'fibsem/ui/napari/properties.py' 2026-05-01T01:37:28,468 adding 'fibsem/ui/napari/utilities.py' 2026-05-01T01:37:28,470 adding 'fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py' 2026-05-01T01:37:28,472 adding 'fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py' 2026-05-01T01:37:28,473 adding 'fibsem/ui/qtdesigner_files/FibsemLabellingUI.py' 2026-05-01T01:37:28,475 adding 'fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py' 2026-05-01T01:37:28,476 adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py' 2026-05-01T01:37:28,479 adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py' 2026-05-01T01:37:28,481 adding 'fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py' 2026-05-01T01:37:28,482 adding 'fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py' 2026-05-01T01:37:28,484 adding 'fibsem/ui/qtdesigner_files/FibsemSpotBurnWidget.py' 2026-05-01T01:37:28,485 adding 'fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py' 2026-05-01T01:37:28,486 adding 'fibsem/ui/qtdesigner_files/FibsemUI.py' 2026-05-01T01:37:28,488 adding 'fibsem/ui/qtdesigner_files/detection_dialog.py' 2026-05-01T01:37:28,490 adding 'fibsem/ui/qtdesigner_files/image_viewer.py' 2026-05-01T01:37:28,493 adding 'fibsem/ui/widgets/angle_measure.py' 2026-05-01T01:37:28,495 adding 'fibsem/ui/widgets/annotation_pin.py' 2026-05-01T01:37:28,497 adding 'fibsem/ui/widgets/autolamella_apply_protocol_dialog.py' 2026-05-01T01:37:28,499 adding 'fibsem/ui/widgets/autolamella_create_experiment_widget.py' 2026-05-01T01:37:28,502 adding 'fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py' 2026-05-01T01:37:28,505 adding 'fibsem/ui/widgets/autolamella_generate_report_widget.py' 2026-05-01T01:37:28,507 adding 'fibsem/ui/widgets/autolamella_global_task_editor_dialog.py' 2026-05-01T01:37:28,512 adding 'fibsem/ui/widgets/autolamella_lamella_protocol_editor.py' 2026-05-01T01:37:28,514 adding 'fibsem/ui/widgets/autolamella_load_experiment_widget.py' 2026-05-01T01:37:28,516 adding 'fibsem/ui/widgets/autolamella_load_task_protocol_widget.py' 2026-05-01T01:37:28,519 adding 'fibsem/ui/widgets/autolamella_overview_image_widget.py' 2026-05-01T01:37:28,521 adding 'fibsem/ui/widgets/autolamella_protocol_information_widget.py' 2026-05-01T01:37:28,523 adding 'fibsem/ui/widgets/autolamella_task_config_editor.py' 2026-05-01T01:37:28,526 adding 'fibsem/ui/widgets/autolamella_task_config_widget.py' 2026-05-01T01:37:28,529 adding 'fibsem/ui/widgets/beam_settings_widget.py' 2026-05-01T01:37:28,530 adding 'fibsem/ui/widgets/beam_widget.py' 2026-05-01T01:37:28,535 adding 'fibsem/ui/widgets/custom_widgets.py' 2026-05-01T01:37:28,536 adding 'fibsem/ui/widgets/dataframe_table_widget.py' 2026-05-01T01:37:28,538 adding 'fibsem/ui/widgets/detector_settings_widget.py' 2026-05-01T01:37:28,540 adding 'fibsem/ui/widgets/drag_distance.py' 2026-05-01T01:37:28,542 adding 'fibsem/ui/widgets/dual_beam_widget.py' 2026-05-01T01:37:28,544 adding 'fibsem/ui/widgets/fibsem_image_flow_widget.py' 2026-05-01T01:37:28,546 adding 'fibsem/ui/widgets/hook_config_widget.py' 2026-05-01T01:37:28,548 adding 'fibsem/ui/widgets/hud_ticker.py' 2026-05-01T01:37:28,550 adding 'fibsem/ui/widgets/image_annotation_widget.py' 2026-05-01T01:37:28,553 adding 'fibsem/ui/widgets/image_settings_widget.py' 2026-05-01T01:37:28,555 adding 'fibsem/ui/widgets/lamella_card_widget.py' 2026-05-01T01:37:28,557 adding 'fibsem/ui/widgets/lamella_list_widget.py' 2026-05-01T01:37:28,559 adding 'fibsem/ui/widgets/lamella_task_image_widget.py' 2026-05-01T01:37:28,561 adding 'fibsem/ui/widgets/lamella_workflow_widget.py' 2026-05-01T01:37:28,564 adding 'fibsem/ui/widgets/microscope_config_widget.py' 2026-05-01T01:37:28,565 adding 'fibsem/ui/widgets/milling_alignment_widget.py' 2026-05-01T01:37:28,567 adding 'fibsem/ui/widgets/milling_settings_widget.py' 2026-05-01T01:37:28,572 adding 'fibsem/ui/widgets/milling_stage_editor_widget.py' 2026-05-01T01:37:28,576 adding 'fibsem/ui/widgets/milling_stage_list_widget.py' 2026-05-01T01:37:28,578 adding 'fibsem/ui/widgets/milling_stages_widget.py' 2026-05-01T01:37:28,579 adding 'fibsem/ui/widgets/milling_task_acquisition_settings_widget.py' 2026-05-01T01:37:28,582 adding 'fibsem/ui/widgets/milling_task_config_widget.py' 2026-05-01T01:37:28,584 adding 'fibsem/ui/widgets/milling_task_config_widget2.py' 2026-05-01T01:37:28,586 adding 'fibsem/ui/widgets/milling_task_viewer_widget.py' 2026-05-01T01:37:28,588 adding 'fibsem/ui/widgets/milling_widget.py' 2026-05-01T01:37:28,590 adding 'fibsem/ui/widgets/notifications.py' 2026-05-01T01:37:28,592 adding 'fibsem/ui/widgets/overview_acquisition_settings_widget.py' 2026-05-01T01:37:28,594 adding 'fibsem/ui/widgets/pattern_settings_widget.py' 2026-05-01T01:37:28,595 adding 'fibsem/ui/widgets/preferences_dialog.py' 2026-05-01T01:37:28,597 adding 'fibsem/ui/widgets/profile_line.py' 2026-05-01T01:37:28,598 adding 'fibsem/ui/widgets/progress_widget.py' 2026-05-01T01:37:28,600 adding 'fibsem/ui/widgets/radial_menu.py' 2026-05-01T01:37:28,602 adding 'fibsem/ui/widgets/reference_image_parameters_widget.py' 2026-05-01T01:37:28,604 adding 'fibsem/ui/widgets/sample_holder_widget.py' 2026-05-01T01:37:28,606 adding 'fibsem/ui/widgets/strategy_settings_widget.py' 2026-05-01T01:37:28,608 adding 'fibsem/ui/widgets/task_history_table_widget.py' 2026-05-01T01:37:28,610 adding 'fibsem/ui/widgets/workflow_config_widget.py' 2026-05-01T01:37:28,612 adding 'fibsem/ui/widgets/workflow_info_widget.py' 2026-05-01T01:37:28,613 adding 'fibsem/ui/widgets/workflow_task_editor_widget.py' 2026-05-01T01:37:28,616 adding 'fibsem/ui/widgets/workflow_timeline_widget.py' 2026-05-01T01:37:28,618 adding 'fibsem/ui/widgets/zoom_loupe.py' 2026-05-01T01:37:28,621 adding 'fibsem/ui/widgets/tests/test-icon-tool-button.py' 2026-05-01T01:37:28,622 adding 'fibsem/ui/widgets/tests/test-image-settings-widget.py' 2026-05-01T01:37:28,624 adding 'fibsem/ui/widgets/tests/test-lamella-card.py' 2026-05-01T01:37:28,625 adding 'fibsem/ui/widgets/tests/test-lamella-list.py' 2026-05-01T01:37:28,627 adding 'fibsem/ui/widgets/tests/test-lamella-workflow.py' 2026-05-01T01:37:28,628 adding 'fibsem/ui/widgets/tests/test-progress-bar.py' 2026-05-01T01:37:28,630 adding 'fibsem/ui/widgets/tests/test-spinner-icon.py' 2026-05-01T01:37:28,631 adding 'fibsem/ui/widgets/tests/test-workflow-config.py' 2026-05-01T01:37:28,633 adding 'fibsem/ui/widgets/tests/test_alignment_comparison.py' 2026-05-01T01:37:28,634 adding 'fibsem/ui/widgets/tests/test_alignment_plot_v2.py' 2026-05-01T01:37:28,635 adding 'fibsem/ui/widgets/tests/test_countdown_progress.py' 2026-05-01T01:37:28,636 adding 'fibsem/ui/widgets/tests/test_drag_distance.py' 2026-05-01T01:37:28,638 adding 'fibsem/ui/widgets/tests/test_hooks_manual.py' 2026-05-01T01:37:28,639 adding 'fibsem/ui/widgets/tests/test_lamella_name_list_widget.py' 2026-05-01T01:37:28,640 adding 'fibsem/ui/widgets/tests/test_lamella_task_image_widget.py' 2026-05-01T01:37:28,642 adding 'fibsem/ui/widgets/tests/test_milling_settings_widget.py' 2026-05-01T01:37:28,643 adding 'fibsem/ui/widgets/tests/test_milling_stage_list.py' 2026-05-01T01:37:28,644 adding 'fibsem/ui/widgets/tests/test_milling_stages_widget.py' 2026-05-01T01:37:28,646 adding 'fibsem/ui/widgets/tests/test_milling_task_config_widget2.py' 2026-05-01T01:37:28,648 adding 'fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py' 2026-05-01T01:37:28,649 adding 'fibsem/ui/widgets/tests/test_pattern_settings_widget.py' 2026-05-01T01:37:28,650 adding 'fibsem/ui/widgets/tests/test_progress_widget.py' 2026-05-01T01:37:28,652 adding 'fibsem/ui/widgets/tests/test_radial_menu.py' 2026-05-01T01:37:28,653 adding 'fibsem/ui/widgets/tests/test_radial_ruler_demo.py' 2026-05-01T01:37:28,655 adding 'fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py' 2026-05-01T01:37:28,656 adding 'fibsem/ui/widgets/tests/test_toast.py' 2026-05-01T01:37:28,658 adding 'fibsem/ui/widgets/tests/test_workflow_timeline_animation.py' 2026-05-01T01:37:28,659 adding 'fibsem/util/__init__.py' 2026-05-01T01:37:28,661 adding 'fibsem/util/draw_numbers.py' 2026-05-01T01:37:28,663 adding 'fibsem/util/filename.py' 2026-05-01T01:37:28,665 adding 'fibsem-0.5.0.dist-info/licenses/LICENSE' 2026-05-01T01:37:28,667 adding 'fibsem-0.5.0.dist-info/METADATA' 2026-05-01T01:37:28,668 adding 'fibsem-0.5.0.dist-info/WHEEL' 2026-05-01T01:37:28,669 adding 'fibsem-0.5.0.dist-info/entry_points.txt' 2026-05-01T01:37:28,670 adding 'fibsem-0.5.0.dist-info/top_level.txt' 2026-05-01T01:37:28,675 adding 'fibsem-0.5.0.dist-info/RECORD' 2026-05-01T01:37:28,785 removing build/bdist.linux-armv7l/wheel 2026-05-01T01:37:28,980 Building wheel for fibsem (pyproject.toml): finished with status 'done' 2026-05-01T01:37:29,196 Created wheel for fibsem: filename=fibsem-0.5.0-py3-none-any.whl size=10288528 sha256=4e555655d3ee154f94f19f852f0bdecd95e5c7f8a3da05e15d41613387b4a956 2026-05-01T01:37:29,198 Stored in directory: /tmp/pip-ephem-wheel-cache-1unqm54k/wheels/2c/63/c4/27e7e3b429734e52f6dc31a6c4756ad46674fff00fd29c5669 2026-05-01T01:37:29,224 Successfully built fibsem 2026-05-01T01:37:29,467 Removed build tracker: '/tmp/pip-build-tracker-wx0tssy6'