2026-05-04T09:50:39,377 Created temporary directory: /tmp/pip-ephem-wheel-cache-fysihg70 2026-05-04T09:50:39,379 Created temporary directory: /tmp/pip-build-tracker-hdglnyis 2026-05-04T09:50:39,379 Initialized build tracking at /tmp/pip-build-tracker-hdglnyis 2026-05-04T09:50:39,380 Created build tracker: /tmp/pip-build-tracker-hdglnyis 2026-05-04T09:50:39,380 Entered build tracker: /tmp/pip-build-tracker-hdglnyis 2026-05-04T09:50:39,381 Created temporary directory: /tmp/pip-wheel-2cyk14ks 2026-05-04T09:50:39,384 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-04T09:50:39,387 Created temporary directory: /tmp/pip-ephem-wheel-cache-ucndr6_p 2026-05-04T09:50:39,408 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-04T09:50:39,412 2 location(s) to search for versions of functional-sampling-tool: 2026-05-04T09:50:39,412 * https://pypi.org/simple/functional-sampling-tool/ 2026-05-04T09:50:39,412 * https://www.piwheels.org/simple/functional-sampling-tool/ 2026-05-04T09:50:39,413 Fetching project page and analyzing links: https://pypi.org/simple/functional-sampling-tool/ 2026-05-04T09:50:39,414 Getting page https://pypi.org/simple/functional-sampling-tool/ 2026-05-04T09:50:39,415 Found index url https://pypi.org/simple 2026-05-04T09:50:39,647 Fetched page https://pypi.org/simple/functional-sampling-tool/ as application/vnd.pypi.simple.v1+json 2026-05-04T09:50:39,649 Found link https://files.pythonhosted.org/packages/d3/05/5c5cec6b2c2ebb45ee42db2506e6317cf3e79027539943d0c6ee1479d9d2/functional_sampling_tool-0.0.4.tar.gz (from https://pypi.org/simple/functional-sampling-tool/) (requires-python:>=3.7), version: 0.0.4 2026-05-04T09:50:39,650 Found link https://files.pythonhosted.org/packages/7c/70/602705a520eef9104621e81465ec5958be9818436c6bb2ded3d611eceb9f/functional_sampling_tool-0.0.5.tar.gz (from https://pypi.org/simple/functional-sampling-tool/) (requires-python:>=3.7), version: 0.0.5 2026-05-04T09:50:39,652 Found link https://files.pythonhosted.org/packages/9e/1e/70d9e5cf9546ad617bebea2c31c4fbeee4524a3a500e160a54ed3fd6627c/functional_sampling_tool-0.0.6.tar.gz (from https://pypi.org/simple/functional-sampling-tool/) (requires-python:>=3.7), version: 0.0.6 2026-05-04T09:50:39,653 Found link https://files.pythonhosted.org/packages/9c/72/d6703aa75e73031f2d6836123ca002b7a35f350f43cc2a59a0bf3fe714ee/functional_sampling_tool-0.0.8.tar.gz (from https://pypi.org/simple/functional-sampling-tool/) (requires-python:>=3.7), version: 0.0.8 2026-05-04T09:50:39,654 Found link https://files.pythonhosted.org/packages/c9/7f/2a38df0c396e088174fa31be77563119b28cf4e9f5fc80fdf075fb3cebb3/functional_sampling_tool-0.0.9.tar.gz (from https://pypi.org/simple/functional-sampling-tool/) (requires-python:>=3.7), version: 0.0.9 2026-05-04T09:50:39,655 Found link https://files.pythonhosted.org/packages/03/31/5f6c32eb0e391aa2c591b0e5f992b6b7562322b64f84239569a8666ba3ca/functional_sampling_tool-0.0.10.tar.gz (from https://pypi.org/simple/functional-sampling-tool/) (requires-python:>=3.7), version: 0.0.10 2026-05-04T09:50:39,656 Found link https://files.pythonhosted.org/packages/1d/bf/56ba699880cf4369145c4e921e1b5c74cf441219c748d9ef4572c5f08ac1/functional_sampling_tool-0.0.11.tar.gz (from https://pypi.org/simple/functional-sampling-tool/) (requires-python:>=3.10), version: 0.0.11 2026-05-04T09:50:39,657 Fetching project page and analyzing links: https://www.piwheels.org/simple/functional-sampling-tool/ 2026-05-04T09:50:39,657 Getting page https://www.piwheels.org/simple/functional-sampling-tool/ 2026-05-04T09:50:39,659 Found index url https://www.piwheels.org/simple 2026-05-04T09:50:39,833 Fetched page https://www.piwheels.org/simple/functional-sampling-tool/ as text/html 2026-05-04T09:50:39,844 Skipping link: No binaries permitted for functional-sampling-tool: https://archive1.piwheels.org/simple/functional-sampling-tool/functional_sampling_tool-0.0.10-cp311-cp311-linux_armv6l.whl#sha256=3cc6334e623111a4d83cb3f3e4b0f79a0dfacc52b40e65cd98ad980c69dcc5bb (from https://www.piwheels.org/simple/functional-sampling-tool/) (requires-python:>=3.7) 2026-05-04T09:50:39,845 Skipping link: No binaries permitted for functional-sampling-tool: https://archive1.piwheels.org/simple/functional-sampling-tool/functional_sampling_tool-0.0.10-cp311-cp311-linux_armv7l.whl#sha256=3cc6334e623111a4d83cb3f3e4b0f79a0dfacc52b40e65cd98ad980c69dcc5bb (from https://www.piwheels.org/simple/functional-sampling-tool/) (requires-python:>=3.7) 2026-05-04T09:50:39,846 Skipping link: No binaries permitted for functional-sampling-tool: https://archive1.piwheels.org/simple/functional-sampling-tool/functional_sampling_tool-0.0.10-cp39-cp39-linux_armv7l.whl#sha256=2dd6d231ff794b5c7fe28bce57a842f73286c3c651ad2c7993e13255c036e056 (from https://www.piwheels.org/simple/functional-sampling-tool/) (requires-python:>=3.7) 2026-05-04T09:50:39,846 Skipping link: No binaries permitted for functional-sampling-tool: https://archive1.piwheels.org/simple/functional-sampling-tool/functional_sampling_tool-0.0.10-cp39-cp39-linux_armv6l.whl#sha256=2dd6d231ff794b5c7fe28bce57a842f73286c3c651ad2c7993e13255c036e056 (from https://www.piwheels.org/simple/functional-sampling-tool/) (requires-python:>=3.7) 2026-05-04T09:50:39,847 Skipping link: No binaries permitted for functional-sampling-tool: 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https://pypi.org/simple/functional-sampling-tool/ 2026-05-04T09:50:39,884 Given no hashes to check 1 links for project 'functional-sampling-tool': discarding no candidates 2026-05-04T09:50:39,902 Collecting functional-sampling-tool==0.0.11 2026-05-04T09:50:39,905 Created temporary directory: /tmp/pip-unpack-rvk822pu 2026-05-04T09:50:40,059 Downloading functional_sampling_tool-0.0.11.tar.gz (236 kB) 2026-05-04T09:50:40,279 Added functional-sampling-tool==0.0.11 from https://files.pythonhosted.org/packages/1d/bf/56ba699880cf4369145c4e921e1b5c74cf441219c748d9ef4572c5f08ac1/functional_sampling_tool-0.0.11.tar.gz to build tracker '/tmp/pip-build-tracker-hdglnyis' 2026-05-04T09:50:40,285 Created temporary directory: /tmp/pip-build-env-8bifvb9e 2026-05-04T09:50:40,290 Installing build dependencies: started 2026-05-04T09:50:40,291 Running command pip subprocess to install build dependencies 2026-05-04T09:50:41,418 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-04T09:50:41,858 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-04T09:50:41,881 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-04T09:50:43,632 Collecting setuptools>=61 2026-05-04T09:50:43,705 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-04T09:50:45,784 Collecting cython 2026-05-04T09:50:46,557 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-05-04T09:50:47,915 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-04T09:50:47,923 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-04T09:50:47,930 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-04T09:50:47,937 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-04T09:50:47,944 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-04T09:50:48,855 Collecting numpy<3,>=1.21 2026-05-04T09:50:49,321 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.4-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-05-04T09:50:52,439 Installing collected packages: setuptools, numpy, cython 2026-05-04T09:51:04,755 Creating /tmp/pip-build-env-8bifvb9e/overlay/local/bin 2026-05-04T09:51:04,757 changing mode of /tmp/pip-build-env-8bifvb9e/overlay/local/bin/f2py to 755 2026-05-04T09:51:04,760 changing mode of /tmp/pip-build-env-8bifvb9e/overlay/local/bin/numpy-config to 755 2026-05-04T09:51:08,491 changing mode of /tmp/pip-build-env-8bifvb9e/overlay/local/bin/cygdb to 755 2026-05-04T09:51:08,493 changing mode of /tmp/pip-build-env-8bifvb9e/overlay/local/bin/cython to 755 2026-05-04T09:51:08,495 changing mode of /tmp/pip-build-env-8bifvb9e/overlay/local/bin/cythonize to 755 2026-05-04T09:51:08,525 Successfully installed cython-3.2.4 numpy-2.4.4 setuptools-82.0.1 2026-05-04T09:51:08,985 Installing build dependencies: finished with status 'done' 2026-05-04T09:51:08,992 Getting requirements to build wheel: started 2026-05-04T09:51:08,994 Running command Getting requirements to build wheel 2026-05-04T09:51:15,383 Compiling lib/_ctransformations.pyx because it depends on /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2026-05-04T09:51:15,384 [1/1] Cythonizing lib/_ctransformations.pyx 2026-05-04T09:51:15,405 /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-04T09:51:15,406 !! 2026-05-04T09:51:15,407 ******************************************************************************** 2026-05-04T09:51:15,407 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-04T09:51:15,408 License :: OSI Approved :: MIT License 2026-05-04T09:51:15,409 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-04T09:51:15,410 ******************************************************************************** 2026-05-04T09:51:15,411 !! 2026-05-04T09:51:15,412 self._finalize_license_expression() 2026-05-04T09:51:15,472 running egg_info 2026-05-04T09:51:15,480 writing functional_sampling_tool.egg-info/PKG-INFO 2026-05-04T09:51:15,486 writing dependency_links to functional_sampling_tool.egg-info/dependency_links.txt 2026-05-04T09:51:15,488 writing entry points to functional_sampling_tool.egg-info/entry_points.txt 2026-05-04T09:51:15,490 writing requirements to functional_sampling_tool.egg-info/requires.txt 2026-05-04T09:51:15,492 writing top-level names to functional_sampling_tool.egg-info/top_level.txt 2026-05-04T09:51:15,536 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:15,537 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:15,538 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:15,538 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:15,539 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:15,543 reading manifest file 'functional_sampling_tool.egg-info/SOURCES.txt' 2026-05-04T09:51:15,547 reading manifest template 'MANIFEST.in' 2026-05-04T09:51:15,548 adding license file 'LICENSE' 2026-05-04T09:51:15,551 writing manifest file 'functional_sampling_tool.egg-info/SOURCES.txt' 2026-05-04T09:51:16,281 Getting requirements to build wheel: finished with status 'done' 2026-05-04T09:51:16,285 Created temporary directory: /tmp/pip-modern-metadata-6el8bgmo 2026-05-04T09:51:16,287 Preparing metadata (pyproject.toml): started 2026-05-04T09:51:16,289 Running command Preparing metadata (pyproject.toml) 2026-05-04T09:51:17,959 /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-04T09:51:17,959 !! 2026-05-04T09:51:17,960 ******************************************************************************** 2026-05-04T09:51:17,960 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-04T09:51:17,961 License :: OSI Approved :: MIT License 2026-05-04T09:51:17,962 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-04T09:51:17,963 ******************************************************************************** 2026-05-04T09:51:17,963 !! 2026-05-04T09:51:17,964 self._finalize_license_expression() 2026-05-04T09:51:17,987 running dist_info 2026-05-04T09:51:18,000 creating /tmp/pip-modern-metadata-6el8bgmo/functional_sampling_tool.egg-info 2026-05-04T09:51:18,001 writing /tmp/pip-modern-metadata-6el8bgmo/functional_sampling_tool.egg-info/PKG-INFO 2026-05-04T09:51:18,007 writing dependency_links to /tmp/pip-modern-metadata-6el8bgmo/functional_sampling_tool.egg-info/dependency_links.txt 2026-05-04T09:51:18,008 writing entry points to /tmp/pip-modern-metadata-6el8bgmo/functional_sampling_tool.egg-info/entry_points.txt 2026-05-04T09:51:18,010 writing requirements to /tmp/pip-modern-metadata-6el8bgmo/functional_sampling_tool.egg-info/requires.txt 2026-05-04T09:51:18,011 writing top-level names to /tmp/pip-modern-metadata-6el8bgmo/functional_sampling_tool.egg-info/top_level.txt 2026-05-04T09:51:18,012 writing manifest file '/tmp/pip-modern-metadata-6el8bgmo/functional_sampling_tool.egg-info/SOURCES.txt' 2026-05-04T09:51:18,051 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:18,051 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:18,052 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:18,053 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:18,053 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:18,058 reading manifest file '/tmp/pip-modern-metadata-6el8bgmo/functional_sampling_tool.egg-info/SOURCES.txt' 2026-05-04T09:51:18,061 reading manifest template 'MANIFEST.in' 2026-05-04T09:51:18,062 adding license file 'LICENSE' 2026-05-04T09:51:18,065 writing manifest file '/tmp/pip-modern-metadata-6el8bgmo/functional_sampling_tool.egg-info/SOURCES.txt' 2026-05-04T09:51:18,066 creating '/tmp/pip-modern-metadata-6el8bgmo/functional_sampling_tool-0.0.11.dist-info' 2026-05-04T09:51:18,280 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-04T09:51:18,286 Source in /tmp/pip-wheel-2cyk14ks/functional-sampling-tool_e7585153954b441ab85f42fe10d9e689 has version 0.0.11, which satisfies requirement functional-sampling-tool==0.0.11 from https://files.pythonhosted.org/packages/1d/bf/56ba699880cf4369145c4e921e1b5c74cf441219c748d9ef4572c5f08ac1/functional_sampling_tool-0.0.11.tar.gz 2026-05-04T09:51:18,287 Removed functional-sampling-tool==0.0.11 from https://files.pythonhosted.org/packages/1d/bf/56ba699880cf4369145c4e921e1b5c74cf441219c748d9ef4572c5f08ac1/functional_sampling_tool-0.0.11.tar.gz from build tracker '/tmp/pip-build-tracker-hdglnyis' 2026-05-04T09:51:18,295 Created temporary directory: /tmp/pip-unpack-wu3f8s2i 2026-05-04T09:51:18,296 Building wheels for collected packages: functional-sampling-tool 2026-05-04T09:51:18,301 Created temporary directory: /tmp/pip-wheel-m_t7rlh8 2026-05-04T09:51:18,301 Destination directory: /tmp/pip-wheel-m_t7rlh8 2026-05-04T09:51:18,303 Building wheel for functional-sampling-tool (pyproject.toml): started 2026-05-04T09:51:18,304 Running command Building wheel for functional-sampling-tool (pyproject.toml) 2026-05-04T09:51:19,880 /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-04T09:51:19,880 !! 2026-05-04T09:51:19,881 ******************************************************************************** 2026-05-04T09:51:19,882 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-04T09:51:19,883 License :: OSI Approved :: MIT License 2026-05-04T09:51:19,884 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-04T09:51:19,884 ******************************************************************************** 2026-05-04T09:51:19,885 !! 2026-05-04T09:51:19,886 self._finalize_license_expression() 2026-05-04T09:51:19,907 running bdist_wheel 2026-05-04T09:51:19,940 running build 2026-05-04T09:51:19,940 running build_py 2026-05-04T09:51:19,951 creating build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,953 copying src/clustering.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,956 copying src/utils.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,958 copying src/choosing.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,961 copying src/cmd_line.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,964 copying src/inout.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,966 copying src/exceptions.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,968 copying src/default_config.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,971 copying src/epoch_starting.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,973 copying src/__init__.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,975 copying src/transformations.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool 2026-05-04T09:51:19,978 creating build/lib.linux-armv7l-cpython-311/functional_sampling_tool/analysis 2026-05-04T09:51:19,979 copying src/analysis/ancestry.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool/analysis 2026-05-04T09:51:19,982 copying src/analysis/parsers.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool/analysis 2026-05-04T09:51:19,984 copying src/analysis/extract.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool/analysis 2026-05-04T09:51:19,987 copying src/analysis/__init__.py -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool/analysis 2026-05-04T09:51:19,988 running egg_info 2026-05-04T09:51:20,002 writing functional_sampling_tool.egg-info/PKG-INFO 2026-05-04T09:51:20,007 writing dependency_links to functional_sampling_tool.egg-info/dependency_links.txt 2026-05-04T09:51:20,008 writing entry points to functional_sampling_tool.egg-info/entry_points.txt 2026-05-04T09:51:20,010 writing requirements to functional_sampling_tool.egg-info/requires.txt 2026-05-04T09:51:20,011 writing top-level names to functional_sampling_tool.egg-info/top_level.txt 2026-05-04T09:51:20,019 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:20,019 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:20,019 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:20,020 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:20,020 dependency /tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-05-04T09:51:20,026 reading manifest file 'functional_sampling_tool.egg-info/SOURCES.txt' 2026-05-04T09:51:20,029 reading manifest template 'MANIFEST.in' 2026-05-04T09:51:20,030 adding license file 'LICENSE' 2026-05-04T09:51:20,034 writing manifest file 'functional_sampling_tool.egg-info/SOURCES.txt' 2026-05-04T09:51:20,038 creating build/lib.linux-armv7l-cpython-311/functional_sampling_tool/templates 2026-05-04T09:51:20,039 copying src/templates/config_example.py.txt -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool/templates 2026-05-04T09:51:20,042 copying src/templates/sbatch_template.sh -> build/lib.linux-armv7l-cpython-311/functional_sampling_tool/templates 2026-05-04T09:51:20,045 running build_ext 2026-05-04T09:51:20,052 building 'functional_sampling_tool._ctransformations' extension 2026-05-04T09:51:20,053 creating build/temp.linux-armv7l-cpython-311/lib 2026-05-04T09:51:20,054 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-8bifvb9e/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c lib/_ctransformations.cpp -o build/temp.linux-armv7l-cpython-311/lib/_ctransformations.o -O3 2026-05-04T09:51:59,698 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/lib/_ctransformations.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/functional_sampling_tool/_ctransformations.cpython-311-arm-linux-gnueabihf.so 2026-05-04T09:52:00,038 installing to build/bdist.linux-armv7l/wheel 2026-05-04T09:52:00,038 running install 2026-05-04T09:52:00,062 running install_lib 2026-05-04T09:52:00,071 creating build/bdist.linux-armv7l/wheel 2026-05-04T09:52:00,073 creating build/bdist.linux-armv7l/wheel/functional_sampling_tool 2026-05-04T09:52:00,074 creating build/bdist.linux-armv7l/wheel/functional_sampling_tool/analysis 2026-05-04T09:52:00,076 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/analysis/ancestry.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool/analysis 2026-05-04T09:52:00,078 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/analysis/parsers.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool/analysis 2026-05-04T09:52:00,080 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/analysis/extract.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool/analysis 2026-05-04T09:52:00,082 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool/analysis 2026-05-04T09:52:00,084 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/clustering.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,086 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/_ctransformations.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,119 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/utils.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,121 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/choosing.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,124 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/cmd_line.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,126 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/inout.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,128 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/exceptions.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,130 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/default_config.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,133 creating build/bdist.linux-armv7l/wheel/functional_sampling_tool/templates 2026-05-04T09:52:00,135 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/templates/sbatch_template.sh -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool/templates 2026-05-04T09:52:00,137 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/templates/config_example.py.txt -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool/templates 2026-05-04T09:52:00,140 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/epoch_starting.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,142 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/__init__.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,144 copying build/lib.linux-armv7l-cpython-311/functional_sampling_tool/transformations.py -> build/bdist.linux-armv7l/wheel/./functional_sampling_tool 2026-05-04T09:52:00,146 running install_egg_info 2026-05-04T09:52:00,161 Copying functional_sampling_tool.egg-info to build/bdist.linux-armv7l/wheel/./functional_sampling_tool-0.0.11-py3.11.egg-info 2026-05-04T09:52:00,173 running install_scripts 2026-05-04T09:52:00,219 creating build/bdist.linux-armv7l/wheel/functional_sampling_tool-0.0.11.dist-info/WHEEL 2026-05-04T09:52:00,222 creating '/tmp/pip-wheel-m_t7rlh8/.tmp-2s8k69_h/functional_sampling_tool-0.0.11-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-04T09:52:00,225 adding 'functional_sampling_tool/__init__.py' 2026-05-04T09:52:00,644 adding 'functional_sampling_tool/_ctransformations.cpython-311-arm-linux-gnueabihf.so' 2026-05-04T09:52:00,659 adding 'functional_sampling_tool/choosing.py' 2026-05-04T09:52:00,662 adding 'functional_sampling_tool/clustering.py' 2026-05-04T09:52:00,664 adding 'functional_sampling_tool/cmd_line.py' 2026-05-04T09:52:00,666 adding 'functional_sampling_tool/default_config.py' 2026-05-04T09:52:00,668 adding 'functional_sampling_tool/epoch_starting.py' 2026-05-04T09:52:00,670 adding 'functional_sampling_tool/exceptions.py' 2026-05-04T09:52:00,673 adding 'functional_sampling_tool/inout.py' 2026-05-04T09:52:00,675 adding 'functional_sampling_tool/transformations.py' 2026-05-04T09:52:00,677 adding 'functional_sampling_tool/utils.py' 2026-05-04T09:52:00,679 adding 'functional_sampling_tool/analysis/__init__.py' 2026-05-04T09:52:00,681 adding 'functional_sampling_tool/analysis/ancestry.py' 2026-05-04T09:52:00,683 adding 'functional_sampling_tool/analysis/extract.py' 2026-05-04T09:52:00,685 adding 'functional_sampling_tool/analysis/parsers.py' 2026-05-04T09:52:00,687 adding 'functional_sampling_tool/templates/config_example.py.txt' 2026-05-04T09:52:00,689 adding 'functional_sampling_tool/templates/sbatch_template.sh' 2026-05-04T09:52:00,692 adding 'functional_sampling_tool-0.0.11.dist-info/licenses/LICENSE' 2026-05-04T09:52:00,696 adding 'functional_sampling_tool-0.0.11.dist-info/METADATA' 2026-05-04T09:52:00,698 adding 'functional_sampling_tool-0.0.11.dist-info/WHEEL' 2026-05-04T09:52:00,699 adding 'functional_sampling_tool-0.0.11.dist-info/entry_points.txt' 2026-05-04T09:52:00,700 adding 'functional_sampling_tool-0.0.11.dist-info/top_level.txt' 2026-05-04T09:52:00,702 adding 'functional_sampling_tool-0.0.11.dist-info/RECORD' 2026-05-04T09:52:00,712 removing build/bdist.linux-armv7l/wheel 2026-05-04T09:52:00,900 Building wheel for functional-sampling-tool (pyproject.toml): finished with status 'done' 2026-05-04T09:52:00,926 Created wheel for functional-sampling-tool: filename=functional_sampling_tool-0.0.11-cp311-cp311-linux_armv7l.whl size=839590 sha256=0f5dfb6112242298ded062c2036c3506c886ff04fb742d885996a30f50963017 2026-05-04T09:52:00,928 Stored in directory: /tmp/pip-ephem-wheel-cache-ucndr6_p/wheels/a4/b4/94/278c391744a0fe51ba37463b5041e62a1592c5af8e00be632c 2026-05-04T09:52:00,942 Successfully built functional-sampling-tool 2026-05-04T09:52:00,974 Removed build tracker: '/tmp/pip-build-tracker-hdglnyis'