2026-05-04T19:39:18,904 Created temporary directory: /tmp/pip-ephem-wheel-cache-y80fgw_t
2026-05-04T19:39:18,906 Created temporary directory: /tmp/pip-build-tracker-yi37gfht
2026-05-04T19:39:18,907 Initialized build tracking at /tmp/pip-build-tracker-yi37gfht
2026-05-04T19:39:18,907 Created build tracker: /tmp/pip-build-tracker-yi37gfht
2026-05-04T19:39:18,908 Entered build tracker: /tmp/pip-build-tracker-yi37gfht
2026-05-04T19:39:18,909 Created temporary directory: /tmp/pip-wheel-ozkxbqo_
2026-05-04T19:39:18,911 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-04T19:39:18,914 Created temporary directory: /tmp/pip-ephem-wheel-cache-4_awmz1_
2026-05-04T19:39:18,935 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-04T19:39:18,939 2 location(s) to search for versions of acellera-htmd:
2026-05-04T19:39:18,939 * https://pypi.org/simple/acellera-htmd/
2026-05-04T19:39:18,939 * https://www.piwheels.org/simple/acellera-htmd/
2026-05-04T19:39:18,939 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/
2026-05-04T19:39:18,940 Getting page https://pypi.org/simple/acellera-htmd/
2026-05-04T19:39:18,942 Found index url https://pypi.org/simple
2026-05-04T19:39:19,096 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json
2026-05-04T19:39:19,100   Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2
2026-05-04T19:39:19,100   Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4
2026-05-04T19:39:19,101   Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5
2026-05-04T19:39:19,102   Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6
2026-05-04T19:39:19,103   Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8
2026-05-04T19:39:19,104   Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9
2026-05-04T19:39:19,105   Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0
2026-05-04T19:39:19,106   Found link https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.1
2026-05-04T19:39:19,107   Found link https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.2
2026-05-04T19:39:19,108   Found link https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.3
2026-05-04T19:39:19,109   Found link https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.4
2026-05-04T19:39:19,110   Found link https://files.pythonhosted.org/packages/0f/6b/33aaeb43df7e5b74f5070ddd7ebdd18076821ccdadc3f529c50436d9d008/acellera_htmd-2.6.5.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.5
2026-05-04T19:39:19,111   Found link https://files.pythonhosted.org/packages/b3/a6/c2e5b33d5c296f1277038a88421d1a5f265aa0bc614fb5dcd7c041936ec2/acellera_htmd-2.7.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.0
2026-05-04T19:39:19,112 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/
2026-05-04T19:39:19,112 Getting page https://www.piwheels.org/simple/acellera-htmd/
2026-05-04T19:39:19,113 Found index url https://www.piwheels.org/simple
2026-05-04T19:39:19,288 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html
2026-05-04T19:39:19,292   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.5-py3-none-any.whl#sha256=6a4478ef428c11d897f8bed0691db4c073ee7b0cc080975f0ce3794bb17152be (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-04T19:39:19,293   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.4-py3-none-any.whl#sha256=66c7d8d0f505d9c4515b9d989a0710120d27ef39bb24537b9729224bf711dcb6 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-04T19:39:19,293   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.3-py3-none-any.whl#sha256=32d22acbcd9e7adb5730ba97d1fe4de785a0814f14fd802980d53208fc6e291b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-04T19:39:19,294   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.2-py3-none-any.whl#sha256=eb4bab0a119829d1bc40fbb9918fd5ca3ed48922a4ebe7228717cf8de4aa1427 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-04T19:39:19,295   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.1-py3-none-any.whl#sha256=276acfba7f712b652f35f6ce7279fe2885edf66bce30142e45deb90188a58cfb (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-04T19:39:19,295   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.0-py3-none-any.whl#sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-04T19:39:19,296   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-04T19:39:19,296   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-04T19:39:19,297   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/)
2026-05-04T19:39:19,297 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/
2026-05-04T19:39:19,298 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/
2026-05-04T19:39:19,319 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates
2026-05-04T19:39:19,337 Collecting acellera-htmd==2.7.0
2026-05-04T19:39:19,339   Created temporary directory: /tmp/pip-unpack-9evas9wo
2026-05-04T19:39:19,607   Downloading acellera_htmd-2.7.0.tar.gz (4.0 MB)
2026-05-04T19:39:21,664   Added acellera-htmd==2.7.0 from https://files.pythonhosted.org/packages/b3/a6/c2e5b33d5c296f1277038a88421d1a5f265aa0bc614fb5dcd7c041936ec2/acellera_htmd-2.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-yi37gfht'
2026-05-04T19:39:21,670   Created temporary directory: /tmp/pip-build-env-d_o9itub
2026-05-04T19:39:21,674   Installing build dependencies: started
2026-05-04T19:39:21,675   Running command pip subprocess to install build dependencies
2026-05-04T19:39:22,806   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-05-04T19:39:23,243   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-04T19:39:23,267   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-04T19:39:25,028   Collecting setuptools
2026-05-04T19:39:25,122     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-05-04T19:39:25,506   Collecting setuptools-scm>=8
2026-05-04T19:39:25,522     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-05-04T19:39:25,605   Collecting vcs-versioning>=1.0.0.dev0
2026-05-04T19:39:25,622     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-05-04T19:39:25,824   Collecting packaging>=20
2026-05-04T19:39:25,842     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-05-04T19:39:28,782   Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm
2026-05-04T19:39:32,451     Creating /tmp/pip-build-env-d_o9itub/overlay/local/bin
2026-05-04T19:39:32,453     changing mode of /tmp/pip-build-env-d_o9itub/overlay/local/bin/vcs-versioning to 755
2026-05-04T19:39:32,559     changing mode of /tmp/pip-build-env-d_o9itub/overlay/local/bin/setuptools-scm to 755
2026-05-04T19:39:32,587   Successfully installed packaging-26.2 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1
2026-05-04T19:39:32,876   Installing build dependencies: finished with status 'done'
2026-05-04T19:39:32,882   Getting requirements to build wheel: started
2026-05-04T19:39:32,884   Running command Getting requirements to build wheel
2026-05-04T19:39:33,681   running egg_info
2026-05-04T19:39:33,689   writing acellera_htmd.egg-info/PKG-INFO
2026-05-04T19:39:33,694   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-05-04T19:39:33,696   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-05-04T19:39:33,699   writing requirements to acellera_htmd.egg-info/requires.txt
2026-05-04T19:39:33,701   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-05-04T19:39:33,784   /tmp/pip-build-env-d_o9itub/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-04T19:39:33,784     return get_active_overrides().subprocess_timeout
2026-05-04T19:39:33,792   listing git files failed - pretending there aren't any
2026-05-04T19:39:33,796   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-04T19:39:33,817   reading manifest template 'MANIFEST.in'
2026-05-04T19:39:33,835   no previously-included directories found matching 'htmd/data'
2026-05-04T19:39:33,836   no previously-included directories found matching '.github'
2026-05-04T19:39:33,837   no previously-included directories found matching 'doc'
2026-05-04T19:39:33,839   no previously-included directories found matching 'package'
2026-05-04T19:39:33,840   no previously-included directories found matching 'tests'
2026-05-04T19:39:33,841   no previously-included directories found matching 'tutorials'
2026-05-04T19:39:33,842   warning: no previously-included files found matching 'Makefile'
2026-05-04T19:39:33,843   adding license file 'LICENSE'
2026-05-04T19:39:33,865   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-04T19:39:33,973   Getting requirements to build wheel: finished with status 'done'
2026-05-04T19:39:33,976   Created temporary directory: /tmp/pip-modern-metadata-kbsocihd
2026-05-04T19:39:33,978   Preparing metadata (pyproject.toml): started
2026-05-04T19:39:33,979   Running command Preparing metadata (pyproject.toml)
2026-05-04T19:39:34,728   running dist_info
2026-05-04T19:39:34,742   creating /tmp/pip-modern-metadata-kbsocihd/acellera_htmd.egg-info
2026-05-04T19:39:34,743   writing /tmp/pip-modern-metadata-kbsocihd/acellera_htmd.egg-info/PKG-INFO
2026-05-04T19:39:34,748   writing dependency_links to /tmp/pip-modern-metadata-kbsocihd/acellera_htmd.egg-info/dependency_links.txt
2026-05-04T19:39:34,750   writing entry points to /tmp/pip-modern-metadata-kbsocihd/acellera_htmd.egg-info/entry_points.txt
2026-05-04T19:39:34,754   writing requirements to /tmp/pip-modern-metadata-kbsocihd/acellera_htmd.egg-info/requires.txt
2026-05-04T19:39:34,755   writing top-level names to /tmp/pip-modern-metadata-kbsocihd/acellera_htmd.egg-info/top_level.txt
2026-05-04T19:39:34,756   writing manifest file '/tmp/pip-modern-metadata-kbsocihd/acellera_htmd.egg-info/SOURCES.txt'
2026-05-04T19:39:34,829   /tmp/pip-build-env-d_o9itub/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-04T19:39:34,830     return get_active_overrides().subprocess_timeout
2026-05-04T19:39:34,836   listing git files failed - pretending there aren't any
2026-05-04T19:39:34,841   reading manifest file '/tmp/pip-modern-metadata-kbsocihd/acellera_htmd.egg-info/SOURCES.txt'
2026-05-04T19:39:34,843   reading manifest template 'MANIFEST.in'
2026-05-04T19:39:34,860   no previously-included directories found matching 'htmd/data'
2026-05-04T19:39:34,862   no previously-included directories found matching '.github'
2026-05-04T19:39:34,863   no previously-included directories found matching 'doc'
2026-05-04T19:39:34,864   no previously-included directories found matching 'package'
2026-05-04T19:39:34,865   no previously-included directories found matching 'tests'
2026-05-04T19:39:34,866   no previously-included directories found matching 'tutorials'
2026-05-04T19:39:34,867   warning: no previously-included files found matching 'Makefile'
2026-05-04T19:39:34,867   adding license file 'LICENSE'
2026-05-04T19:39:34,884   writing manifest file '/tmp/pip-modern-metadata-kbsocihd/acellera_htmd.egg-info/SOURCES.txt'
2026-05-04T19:39:34,886   creating '/tmp/pip-modern-metadata-kbsocihd/acellera_htmd-2.7.0.dist-info'
2026-05-04T19:39:35,022   Preparing metadata (pyproject.toml): finished with status 'done'
2026-05-04T19:39:35,027   Source in /tmp/pip-wheel-ozkxbqo_/acellera-htmd_1728fe08aced4bb5b3b220a47c0ed65c has version 2.7.0, which satisfies requirement acellera-htmd==2.7.0 from https://files.pythonhosted.org/packages/b3/a6/c2e5b33d5c296f1277038a88421d1a5f265aa0bc614fb5dcd7c041936ec2/acellera_htmd-2.7.0.tar.gz
2026-05-04T19:39:35,028   Removed acellera-htmd==2.7.0 from https://files.pythonhosted.org/packages/b3/a6/c2e5b33d5c296f1277038a88421d1a5f265aa0bc614fb5dcd7c041936ec2/acellera_htmd-2.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-yi37gfht'
2026-05-04T19:39:35,034 Created temporary directory: /tmp/pip-unpack-sbwr0rs8
2026-05-04T19:39:35,034 Building wheels for collected packages: acellera-htmd
2026-05-04T19:39:35,039   Created temporary directory: /tmp/pip-wheel-87pd_z5_
2026-05-04T19:39:35,039   Destination directory: /tmp/pip-wheel-87pd_z5_
2026-05-04T19:39:35,041   Building wheel for acellera-htmd (pyproject.toml): started
2026-05-04T19:39:35,042   Running command Building wheel for acellera-htmd (pyproject.toml)
2026-05-04T19:39:35,763   running bdist_wheel
2026-05-04T19:39:35,788   running build
2026-05-04T19:39:35,788   running build_py
2026-05-04T19:39:35,790   creating build/lib/htmd
2026-05-04T19:39:35,793   copying htmd/units.py -> build/lib/htmd
2026-05-04T19:39:35,794   copying htmd/util.py -> build/lib/htmd
2026-05-04T19:39:35,797   copying htmd/ui.py -> build/lib/htmd
2026-05-04T19:39:35,799   copying htmd/pathplanning.py -> build/lib/htmd
2026-05-04T19:39:35,801   copying htmd/model.py -> build/lib/htmd
2026-05-04T19:39:35,805   copying htmd/metricdata.py -> build/lib/htmd
2026-05-04T19:39:35,809   copying htmd/dock.py -> build/lib/htmd
2026-05-04T19:39:35,811   copying htmd/session.py -> build/lib/htmd
2026-05-04T19:39:35,813   copying htmd/parallelprogress.py -> build/lib/htmd
2026-05-04T19:39:35,815   copying htmd/simlist.py -> build/lib/htmd
2026-05-04T19:39:35,818   copying htmd/latest.py -> build/lib/htmd
2026-05-04T19:39:35,819   copying htmd/license.py -> build/lib/htmd
2026-05-04T19:39:35,822   copying htmd/mutualinformation.py -> build/lib/htmd
2026-05-04T19:39:35,824   copying htmd/decorators.py -> build/lib/htmd
2026-05-04T19:39:35,826   copying htmd/metricdatagenerator.py -> build/lib/htmd
2026-05-04T19:39:35,828   copying htmd/config.py -> build/lib/htmd
2026-05-04T19:39:35,830   copying htmd/__init__.py -> build/lib/htmd
2026-05-04T19:39:35,832   copying htmd/kinetics.py -> build/lib/htmd
2026-05-04T19:39:35,834   copying htmd/versionwarnings.py -> build/lib/htmd
2026-05-04T19:39:35,836   copying htmd/home.py -> build/lib/htmd
2026-05-04T19:39:35,839   creating build/lib/htmd/membranebuilder
2026-05-04T19:39:35,840   copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder
2026-05-04T19:39:35,842   copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder
2026-05-04T19:39:35,844   copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder
2026-05-04T19:39:35,847   copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder
2026-05-04T19:39:35,849   copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder
2026-05-04T19:39:35,851   creating build/lib/htmd/clustering
2026-05-04T19:39:35,852   copying htmd/clustering/regular.py -> build/lib/htmd/clustering
2026-05-04T19:39:35,854   copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering
2026-05-04T19:39:35,857   copying htmd/clustering/__init__.py -> build/lib/htmd/clustering
2026-05-04T19:39:35,859   creating build/lib/htmd/projections
2026-05-04T19:39:35,860   copying htmd/projections/gwpca.py -> build/lib/htmd/projections
2026-05-04T19:39:35,862   copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections
2026-05-04T19:39:35,864   copying htmd/projections/tica.py -> build/lib/htmd/projections
2026-05-04T19:39:35,867   copying htmd/projections/metric.py -> build/lib/htmd/projections
2026-05-04T19:39:35,869   copying htmd/projections/__init__.py -> build/lib/htmd/projections
2026-05-04T19:39:35,872   creating build/lib/htmd/adaptive
2026-05-04T19:39:35,873   copying htmd/adaptive/util.py -> build/lib/htmd/adaptive
2026-05-04T19:39:35,875   copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive
2026-05-04T19:39:35,877   copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive
2026-05-04T19:39:35,880   copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive
2026-05-04T19:39:35,883   copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive
2026-05-04T19:39:35,885   copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive
2026-05-04T19:39:35,888   copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive
2026-05-04T19:39:35,890   creating build/lib/htmd/builder
2026-05-04T19:39:35,891   copying htmd/builder/charmm.py -> build/lib/htmd/builder
2026-05-04T19:39:35,894   copying htmd/builder/ionize.py -> build/lib/htmd/builder
2026-05-04T19:39:35,896   copying htmd/builder/builder.py -> build/lib/htmd/builder
2026-05-04T19:39:35,899   copying htmd/builder/solvate.py -> build/lib/htmd/builder
2026-05-04T19:39:35,901   copying htmd/builder/nonstandard.py -> build/lib/htmd/builder
2026-05-04T19:39:35,905   copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder
2026-05-04T19:39:35,907   copying htmd/builder/noncanonical.py -> build/lib/htmd/builder
2026-05-04T19:39:35,909   copying htmd/builder/__init__.py -> build/lib/htmd/builder
2026-05-04T19:39:35,911   copying htmd/builder/amber.py -> build/lib/htmd/builder
2026-05-04T19:39:35,948   creating build/lib/htmd/share
2026-05-04T19:39:35,949   copying htmd/share/license-checker -> build/lib/htmd/share
2026-05-04T19:39:35,959   creating build/lib/htmd/share/membranebuilder/lipids
2026-05-04T19:39:35,961   copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids
2026-05-04T19:39:35,963   creating build/lib/htmd/share/membranebuilder/lipids/chl1
2026-05-04T19:39:35,964   copying htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/lib/htmd/share/membranebuilder/lipids/chl1
2026-05-04T19:39:35,967   creating build/lib/htmd/share/membranebuilder/lipids/pope
2026-05-04T19:39:35,968   copying htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/lib/htmd/share/membranebuilder/lipids/pope
2026-05-04T19:39:35,970   creating build/lib/htmd/share/membranebuilder/lipids/popc
2026-05-04T19:39:35,972   copying htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/lib/htmd/share/membranebuilder/lipids/popc
2026-05-04T19:39:35,974   creating build/lib/htmd/share/solvate
2026-05-04T19:39:35,975   copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate
2026-05-04T19:39:36,016   creating build/lib/htmd/share/builder
2026-05-04T19:39:36,017   copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder
2026-05-04T19:39:36,020   copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder
2026-05-04T19:39:36,022   copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder
2026-05-04T19:39:36,028   creating build/lib/htmd/share/builder/caps
2026-05-04T19:39:36,029   copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps
2026-05-04T19:39:36,031   copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps
2026-05-04T19:39:36,033   copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps
2026-05-04T19:39:36,035   copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps
2026-05-04T19:39:36,037   copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps
2026-05-04T19:39:36,039   creating build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,040   copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,043   copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,045   copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,048   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,051   copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,053   copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,055   copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,057   copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,059   copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,061   copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,064   copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,066   copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,068   copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,069   copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,071   copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,073   copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,075   copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,077   copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,079   copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,081   copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,083   copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,085   copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,087   copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,090   copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,092   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,094   copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,096   copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,098   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,100   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,102   copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,104   copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,106   copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,108   copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,110   copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,112   copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,114   copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,116   copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,118   copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,120   copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,123   copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,124   copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,126   copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,128   copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,130   copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,132   copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,134   copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,136   copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,138   copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:36,140   creating build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,141   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,143   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,145   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,147   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,149   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,151   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,154   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,156   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,158   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,160   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,162   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,164   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,165   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,168   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,170   copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,172   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,174   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,176   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,178   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,180   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,182   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,184   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,186   copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,188   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,190   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,192   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,194   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,195   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,197   copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,199   copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,201   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,203   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,205   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,207   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,209   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,211   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,214   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,216   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,218   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,220   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,222   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,224   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,226   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,229   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,231   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,233   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,235   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,237   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,240   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,242   copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,244   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,246   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,249   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,251   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,253   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,255   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,257   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,260   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,262   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,264   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,266   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,268   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,270   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,272   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,275   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,277   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,280   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,282   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,285   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,288   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,291   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,293   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,296   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,298   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,301   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,304   copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,307   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,309   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,312   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,315   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,317   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,320   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,322   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,325   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,328   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,331   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,333   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,336   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,339   copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,341   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,344   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,347   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,349   copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,352   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,355   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,357   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,360   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,363   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,365   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,368   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,370   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,373   copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,376   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,378   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,380   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,382   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,385   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,387   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,390   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,392   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,395   copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,397   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,399   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,402   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,404   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,406   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,408   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,410   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,412   copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,416   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,418   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,421   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,423   copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,425   copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,427   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,429   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,431   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,433   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,436   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,438   copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,440   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,442   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:36,444   creating build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,445   copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,447   copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,450   copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,452   copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,454   copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,456   copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,459   copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,461   copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,463   copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,465   copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,468   copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,470   copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,473   copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,475   copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,477   copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,480   copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,482   copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,484   copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,486   copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,488   copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,490   copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,492   copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:36,494   creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:36,495   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:36,497   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:36,501   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:36,504   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:36,506   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:36,508   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:36,511   creating build/lib/htmd/share/builder/charmmfiles
2026-05-04T19:39:36,512   copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles
2026-05-04T19:39:36,514   copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles
2026-05-04T19:39:36,516   creating build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,517   copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,523   copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,526   copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,531   copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,533   copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,540   copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,543   copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,546   copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,551   copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,570   copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:36,573   creating build/lib/htmd/share/builder/charmmfiles/str
2026-05-04T19:39:36,574   copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str
2026-05-04T19:39:36,577   creating build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,578   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,581   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,588   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,596   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,600   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,604   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,608   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,642   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,647   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,671   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,681   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,705   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,709   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,713   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,742   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,744   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,756   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,762   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,775   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:36,778   creating build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-05-04T19:39:36,779   copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-05-04T19:39:36,782   creating build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,783   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,787   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,817   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,820   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,823   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,828   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,830   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,834   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,840   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,844   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,846   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,850   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:36,853   creating build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:36,854   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:36,877   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:36,881   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:36,887   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:36,906   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:36,911   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:36,918   creating build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:36,919   copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:36,922   copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:36,924   copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:36,927   copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:36,930   copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:36,932   creating build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:36,933   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:36,952   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:36,975   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:36,979   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:36,983   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:36,987   creating build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:36,988   copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:36,995   copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:36,999   copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:37,010   copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:37,023   copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:37,027   copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:37,076   copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:37,080   copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:37,085   copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:37,089   copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:37,114   installing to build/bdist.linux-armv7l/wheel
2026-05-04T19:39:37,115   running install
2026-05-04T19:39:37,150   running install_lib
2026-05-04T19:39:37,160   creating build/bdist.linux-armv7l/wheel
2026-05-04T19:39:37,163   creating build/bdist.linux-armv7l/wheel/htmd
2026-05-04T19:39:37,164   copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,167   copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,170   creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2026-05-04T19:39:37,171   copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-04T19:39:37,174   copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-04T19:39:37,177   copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-04T19:39:37,179   copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-04T19:39:37,181   copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-04T19:39:37,183   copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,185   copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,188   copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,191   copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,194   copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,196   copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,198   copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,200   copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,202   copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,205   creating build/bdist.linux-armv7l/wheel/htmd/clustering
2026-05-04T19:39:37,206   copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-05-04T19:39:37,208   copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-05-04T19:39:37,210   copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-05-04T19:39:37,212   copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,214   copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:37,217   creating build/bdist.linux-armv7l/wheel/htmd/share
2026-05-04T19:39:37,218   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder
2026-05-04T19:39:37,220   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids
2026-05-04T19:39:37,222   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1
2026-05-04T19:39:37,223   copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1
2026-05-04T19:39:37,226   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope
2026-05-04T19:39:37,227   copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope
2026-05-04T19:39:37,229   copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids
2026-05-04T19:39:37,231   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc
2026-05-04T19:39:37,232   copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc
2026-05-04T19:39:37,235   copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share
2026-05-04T19:39:37,245   creating build/bdist.linux-armv7l/wheel/htmd/share/solvate
2026-05-04T19:39:37,246   copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate
2026-05-04T19:39:37,286   creating build/bdist.linux-armv7l/wheel/htmd/share/builder
2026-05-04T19:39:37,288   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps
2026-05-04T19:39:37,289   copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-04T19:39:37,292   copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-04T19:39:37,294   copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-04T19:39:37,295   copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-04T19:39:37,297   copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-04T19:39:37,299   copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-05-04T19:39:37,301   copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-05-04T19:39:37,303   copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-05-04T19:39:37,309   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles
2026-05-04T19:39:37,311   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,312   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,314   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,316   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,320   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,321   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,323   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,325   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,327   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,329   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,331   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,333   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,335   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,337   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,338   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,340   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,342   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,344   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,346   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,347   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,349   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,351   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,353   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,354   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,356   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,358   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,360   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,362   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,364   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,366   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,367   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,369   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,370   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,372   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,374   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,375   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,377   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,379   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,381   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,382   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,384   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,386   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,388   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,390   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,392   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,394   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,396   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,397   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,399   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-04T19:39:37,404   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,405   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,407   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,409   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,411   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,413   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,414   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,416   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,418   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,420   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,422   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,423   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,425   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,427   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,429   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,430   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,432   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,434   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,436   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,437   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,439   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,441   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,443   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,444   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,446   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,448   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,450   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,451   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,453   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,455   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,457   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,458   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,460   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,462   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,464   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,465   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,467   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,469   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,471   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,473   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,475   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,477   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,479   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,481   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,483   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,485   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,487   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,489   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,490   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,492   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,494   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,496   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,498   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,500   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,502   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,504   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,506   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,507   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,509   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,511   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,513   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,514   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,516   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,518   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,519   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,521   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,523   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,525   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,527   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,529   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,531   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,532   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,534   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,536   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,538   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,540   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,542   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,544   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,546   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,548   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,549   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,551   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,553   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,555   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,556   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,558   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,560   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,562   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,564   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,565   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,567   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,569   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,571   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,573   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,575   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,577   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,578   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,580   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,582   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,584   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,586   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,588   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,590   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,592   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,594   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,596   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,597   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,599   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,601   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,603   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,605   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,607   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,608   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,611   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,613   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,614   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,616   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,618   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,620   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,622   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,626   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,628   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,630   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,632   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,634   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,636   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,638   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,640   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,642   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,644   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,645   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,647   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,649   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-04T19:39:37,652   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,653   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,655   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,657   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,659   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,661   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,663   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,666   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,668   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,670   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,671   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,674   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,676   copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,679   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,681   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,683   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,685   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,687   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,689   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,691   copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,693   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,695   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,697   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-04T19:39:37,699   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:37,701   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:37,703   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:37,706   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:37,708   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:37,710   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:37,712   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-04T19:39:37,715   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles
2026-05-04T19:39:37,717   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,718   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,723   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,726   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,731   copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,734   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,740   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,743   copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,747   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,752   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,768   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-04T19:39:37,771   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str
2026-05-04T19:39:37,773   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,775   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,777   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,786   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,796   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,800   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,805   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,810   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,843   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,848   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,874   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,882   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,906   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,911   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,917   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,961   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,964   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,983   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:37,988   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:38,002   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-04T19:39:38,005   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd
2026-05-04T19:39:38,006   copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd
2026-05-04T19:39:38,010   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,011   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,014   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,042   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,045   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,047   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,051   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,054   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,056   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,062   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,066   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,069   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,072   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-04T19:39:38,075   copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str
2026-05-04T19:39:38,078   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:38,079   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:38,099   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:38,102   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:38,108   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:38,128   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:38,133   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-04T19:39:38,140   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:38,142   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:38,144   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:38,146   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:38,148   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:38,151   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-04T19:39:38,153   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:38,154   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:38,174   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:38,200   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:38,204   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:38,208   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-04T19:39:38,210   copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-05-04T19:39:38,212   copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-05-04T19:39:38,214   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,215   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,222   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,225   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,237   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,246   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,249   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,292   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,295   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,299   copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,302   copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-04T19:39:38,305   creating build/bdist.linux-armv7l/wheel/htmd/projections
2026-05-04T19:39:38,306   copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-04T19:39:38,308   copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-04T19:39:38,310   copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-04T19:39:38,312   copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-04T19:39:38,314   copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-04T19:39:38,316   copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:38,318   creating build/bdist.linux-armv7l/wheel/htmd/adaptive
2026-05-04T19:39:38,319   copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-04T19:39:38,321   copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-04T19:39:38,323   copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-04T19:39:38,326   copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-04T19:39:38,329   copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-04T19:39:38,331   copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-04T19:39:38,334   copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-04T19:39:38,336   copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:38,338   copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:38,340   copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:38,341   copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:38,344   copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:38,346   copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-04T19:39:38,348   creating build/bdist.linux-armv7l/wheel/htmd/builder
2026-05-04T19:39:38,349   copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-04T19:39:38,353   copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-04T19:39:38,355   copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-04T19:39:38,357   copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-04T19:39:38,360   copying build/lib/htmd/builder/nonstandard.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-04T19:39:38,363   copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-04T19:39:38,365   copying build/lib/htmd/builder/noncanonical.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-04T19:39:38,368   copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-04T19:39:38,369   copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-04T19:39:38,373   running install_egg_info
2026-05-04T19:39:38,385   running egg_info
2026-05-04T19:39:38,392   writing acellera_htmd.egg-info/PKG-INFO
2026-05-04T19:39:38,396   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-05-04T19:39:38,398   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-05-04T19:39:38,401   writing requirements to acellera_htmd.egg-info/requires.txt
2026-05-04T19:39:38,402   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-05-04T19:39:38,467   /tmp/pip-build-env-d_o9itub/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-04T19:39:38,468     return get_active_overrides().subprocess_timeout
2026-05-04T19:39:38,475   listing git files failed - pretending there aren't any
2026-05-04T19:39:38,480   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-04T19:39:38,499   reading manifest template 'MANIFEST.in'
2026-05-04T19:39:38,517   no previously-included directories found matching 'htmd/data'
2026-05-04T19:39:38,519   no previously-included directories found matching '.github'
2026-05-04T19:39:38,520   no previously-included directories found matching 'doc'
2026-05-04T19:39:38,521   no previously-included directories found matching 'package'
2026-05-04T19:39:38,523   no previously-included directories found matching 'tests'
2026-05-04T19:39:38,524   no previously-included directories found matching 'tutorials'
2026-05-04T19:39:38,525   warning: no previously-included files found matching 'Makefile'
2026-05-04T19:39:38,526   adding license file 'LICENSE'
2026-05-04T19:39:38,548   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-04T19:39:38,550   Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.7.0-py3.11.egg-info
2026-05-04T19:39:38,562   running install_scripts
2026-05-04T19:39:38,574   creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.7.0.dist-info/WHEEL
2026-05-04T19:39:38,577   creating '/tmp/pip-wheel-87pd_z5_/.tmp-hilbyyui/acellera_htmd-2.7.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-05-04T19:39:38,580   adding 'acellera_htmd-2.7.0.dist-info/licenses/LICENSE'
2026-05-04T19:39:38,583   adding 'htmd/__init__.py'
2026-05-04T19:39:38,584   adding 'htmd/config.py'
2026-05-04T19:39:38,586   adding 'htmd/decorators.py'
2026-05-04T19:39:38,587   adding 'htmd/dock.py'
2026-05-04T19:39:38,589   adding 'htmd/home.py'
2026-05-04T19:39:38,592   adding 'htmd/kinetics.py'
2026-05-04T19:39:38,593   adding 'htmd/latest.py'
2026-05-04T19:39:38,595   adding 'htmd/license.py'
2026-05-04T19:39:38,602   adding 'htmd/metricdata.py'
2026-05-04T19:39:38,604   adding 'htmd/metricdatagenerator.py'
2026-05-04T19:39:38,612   adding 'htmd/model.py'
2026-05-04T19:39:38,615   adding 'htmd/mutualinformation.py'
2026-05-04T19:39:38,616   adding 'htmd/parallelprogress.py'
2026-05-04T19:39:38,619   adding 'htmd/pathplanning.py'
2026-05-04T19:39:38,620   adding 'htmd/session.py'
2026-05-04T19:39:38,623   adding 'htmd/simlist.py'
2026-05-04T19:39:38,625   adding 'htmd/ui.py'
2026-05-04T19:39:38,626   adding 'htmd/units.py'
2026-05-04T19:39:38,628   adding 'htmd/util.py'
2026-05-04T19:39:38,629   adding 'htmd/versionwarnings.py'
2026-05-04T19:39:38,631   adding 'htmd/adaptive/__init__.py'
2026-05-04T19:39:38,634   adding 'htmd/adaptive/adaptive.py'
2026-05-04T19:39:38,637   adding 'htmd/adaptive/adaptivebandit.py'
2026-05-04T19:39:38,640   adding 'htmd/adaptive/adaptivegoal.py'
2026-05-04T19:39:38,643   adding 'htmd/adaptive/adaptivegoaleg.py'
2026-05-04T19:39:38,645   adding 'htmd/adaptive/adaptiverun.py'
2026-05-04T19:39:38,647   adding 'htmd/adaptive/util.py'
2026-05-04T19:39:38,648   adding 'htmd/builder/__init__.py'
2026-05-04T19:39:38,658   adding 'htmd/builder/amber.py'
2026-05-04T19:39:38,661   adding 'htmd/builder/builder.py'
2026-05-04T19:39:38,665   adding 'htmd/builder/charmm.py'
2026-05-04T19:39:38,668   adding 'htmd/builder/ionize.py'
2026-05-04T19:39:38,669   adding 'htmd/builder/loopmodeler.py'
2026-05-04T19:39:38,673   adding 'htmd/builder/noncanonical.py'
2026-05-04T19:39:38,681   adding 'htmd/builder/nonstandard.py'
2026-05-04T19:39:38,684   adding 'htmd/builder/solvate.py'
2026-05-04T19:39:38,685   adding 'htmd/clustering/__init__.py'
2026-05-04T19:39:38,687   adding 'htmd/clustering/kcenters.py'
2026-05-04T19:39:38,689   adding 'htmd/clustering/regular.py'
2026-05-04T19:39:38,691   adding 'htmd/membranebuilder/__init__.py'
2026-05-04T19:39:38,693   adding 'htmd/membranebuilder/build_membrane.py'
2026-05-04T19:39:38,695   adding 'htmd/membranebuilder/globalminimization.py'
2026-05-04T19:39:38,697   adding 'htmd/membranebuilder/ljfluid.py'
2026-05-04T19:39:38,698   adding 'htmd/membranebuilder/ringpenetration.py'
2026-05-04T19:39:38,700   adding 'htmd/projections/__init__.py'
2026-05-04T19:39:38,701   adding 'htmd/projections/gwpca.py'
2026-05-04T19:39:38,702   adding 'htmd/projections/kmeanstri.py'
2026-05-04T19:39:38,705   adding 'htmd/projections/metric.py'
2026-05-04T19:39:38,707   adding 'htmd/projections/tica.py'
2026-05-04T19:39:38,764   adding 'htmd/share/license-checker'
2026-05-04T19:39:38,795   adding 'htmd/share/builder/charmmlipid2amber.csv'
2026-05-04T19:39:38,798   adding 'htmd/share/builder/triala_capped.cif'
2026-05-04T19:39:38,800   adding 'htmd/share/builder/triala_capped.mmtf'
2026-05-04T19:39:38,802   adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod'
2026-05-04T19:39:38,804   adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi'
2026-05-04T19:39:38,805   adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod'
2026-05-04T19:39:38,807   adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi'
2026-05-04T19:39:38,808   adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod'
2026-05-04T19:39:38,810   adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi'
2026-05-04T19:39:38,811   adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod'
2026-05-04T19:39:38,813   adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi'
2026-05-04T19:39:38,814   adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod'
2026-05-04T19:39:38,816   adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi'
2026-05-04T19:39:38,817   adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod'
2026-05-04T19:39:38,819   adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi'
2026-05-04T19:39:38,820   adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod'
2026-05-04T19:39:38,822   adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi'
2026-05-04T19:39:38,823   adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod'
2026-05-04T19:39:38,825   adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi'
2026-05-04T19:39:38,826   adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod'
2026-05-04T19:39:38,828   adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi'
2026-05-04T19:39:38,830   adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod'
2026-05-04T19:39:38,832   adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi'
2026-05-04T19:39:38,833   adding 'htmd/share/builder/amberfiles/cofactors/README.txt'
2026-05-04T19:39:38,841   adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in'
2026-05-04T19:39:38,846   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod'
2026-05-04T19:39:38,847   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi'
2026-05-04T19:39:38,848   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod'
2026-05-04T19:39:38,850   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi'
2026-05-04T19:39:38,851   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod'
2026-05-04T19:39:38,852   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi'
2026-05-04T19:39:38,853   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod'
2026-05-04T19:39:38,855   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi'
2026-05-04T19:39:38,856   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod'
2026-05-04T19:39:38,858   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi'
2026-05-04T19:39:38,859   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod'
2026-05-04T19:39:38,860   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi'
2026-05-04T19:39:38,861   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod'
2026-05-04T19:39:38,863   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi'
2026-05-04T19:39:38,864   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod'
2026-05-04T19:39:38,865   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi'
2026-05-04T19:39:38,867   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod'
2026-05-04T19:39:38,868   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi'
2026-05-04T19:39:38,869   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod'
2026-05-04T19:39:38,871   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi'
2026-05-04T19:39:38,872   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod'
2026-05-04T19:39:38,873   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi'
2026-05-04T19:39:38,874   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod'
2026-05-04T19:39:38,875   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi'
2026-05-04T19:39:38,876   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod'
2026-05-04T19:39:38,877   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi'
2026-05-04T19:39:38,879   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod'
2026-05-04T19:39:38,880   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi'
2026-05-04T19:39:38,881   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod'
2026-05-04T19:39:38,882   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi'
2026-05-04T19:39:38,883   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod'
2026-05-04T19:39:38,885   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi'
2026-05-04T19:39:38,886   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod'
2026-05-04T19:39:38,887   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi'
2026-05-04T19:39:38,888   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod'
2026-05-04T19:39:38,890   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi'
2026-05-04T19:39:38,891   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod'
2026-05-04T19:39:38,892   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi'
2026-05-04T19:39:38,894   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod'
2026-05-04T19:39:38,895   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi'
2026-05-04T19:39:38,896   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod'
2026-05-04T19:39:38,898   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi'
2026-05-04T19:39:38,899   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod'
2026-05-04T19:39:38,900   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi'
2026-05-04T19:39:38,901   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod'
2026-05-04T19:39:38,903   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi'
2026-05-04T19:39:38,904   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod'
2026-05-04T19:39:38,905   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi'
2026-05-04T19:39:38,906   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod'
2026-05-04T19:39:38,908   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi'
2026-05-04T19:39:38,909   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod'
2026-05-04T19:39:38,910   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi'
2026-05-04T19:39:38,912   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod'
2026-05-04T19:39:38,913   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi'
2026-05-04T19:39:38,914   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod'
2026-05-04T19:39:38,916   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi'
2026-05-04T19:39:38,917   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod'
2026-05-04T19:39:38,918   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi'
2026-05-04T19:39:38,919   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod'
2026-05-04T19:39:38,921   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi'
2026-05-04T19:39:38,922   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod'
2026-05-04T19:39:38,923   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi'
2026-05-04T19:39:38,924   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod'
2026-05-04T19:39:38,926   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi'
2026-05-04T19:39:38,927   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod'
2026-05-04T19:39:38,928   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi'
2026-05-04T19:39:38,930   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod'
2026-05-04T19:39:38,931   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi'
2026-05-04T19:39:38,932   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod'
2026-05-04T19:39:38,934   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi'
2026-05-04T19:39:38,935   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod'
2026-05-04T19:39:38,936   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi'
2026-05-04T19:39:38,937   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod'
2026-05-04T19:39:38,939   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi'
2026-05-04T19:39:38,940   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod'
2026-05-04T19:39:38,941   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi'
2026-05-04T19:39:38,942   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod'
2026-05-04T19:39:38,944   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi'
2026-05-04T19:39:38,945   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod'
2026-05-04T19:39:38,946   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi'
2026-05-04T19:39:38,947   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod'
2026-05-04T19:39:38,949   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi'
2026-05-04T19:39:38,950   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod'
2026-05-04T19:39:38,951   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi'
2026-05-04T19:39:38,953   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod'
2026-05-04T19:39:38,954   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi'
2026-05-04T19:39:38,955   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod'
2026-05-04T19:39:38,956   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi'
2026-05-04T19:39:38,958   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod'
2026-05-04T19:39:38,959   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi'
2026-05-04T19:39:38,960   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod'
2026-05-04T19:39:38,962   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi'
2026-05-04T19:39:38,963   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod'
2026-05-04T19:39:38,964   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi'
2026-05-04T19:39:38,965   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod'
2026-05-04T19:39:38,967   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi'
2026-05-04T19:39:38,968   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod'
2026-05-04T19:39:38,969   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi'
2026-05-04T19:39:38,970   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod'
2026-05-04T19:39:38,972   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi'
2026-05-04T19:39:38,973   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod'
2026-05-04T19:39:38,974   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi'
2026-05-04T19:39:38,976   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod'
2026-05-04T19:39:38,977   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi'
2026-05-04T19:39:38,978   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod'
2026-05-04T19:39:38,980   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi'
2026-05-04T19:39:38,981   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod'
2026-05-04T19:39:38,982   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi'
2026-05-04T19:39:38,983   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod'
2026-05-04T19:39:38,985   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi'
2026-05-04T19:39:38,986   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod'
2026-05-04T19:39:38,987   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi'
2026-05-04T19:39:38,989   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod'
2026-05-04T19:39:38,990   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi'
2026-05-04T19:39:38,992   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod'
2026-05-04T19:39:38,993   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi'
2026-05-04T19:39:38,994   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod'
2026-05-04T19:39:38,996   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi'
2026-05-04T19:39:38,997   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod'
2026-05-04T19:39:38,998   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi'
2026-05-04T19:39:38,999   adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt'
2026-05-04T19:39:39,001   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod'
2026-05-04T19:39:39,002   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi'
2026-05-04T19:39:39,003   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod'
2026-05-04T19:39:39,005   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi'
2026-05-04T19:39:39,006   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod'
2026-05-04T19:39:39,007   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi'
2026-05-04T19:39:39,008   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod'
2026-05-04T19:39:39,012   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi'
2026-05-04T19:39:39,014   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod'
2026-05-04T19:39:39,015   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi'
2026-05-04T19:39:39,037   adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in'
2026-05-04T19:39:39,040   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt'
2026-05-04T19:39:39,041   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod'
2026-05-04T19:39:39,046   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib'
2026-05-04T19:39:39,048   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in'
2026-05-04T19:39:39,050   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log'
2026-05-04T19:39:39,051   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15'
2026-05-04T19:39:39,053   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod'
2026-05-04T19:39:39,055   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi'
2026-05-04T19:39:39,056   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod'
2026-05-04T19:39:39,058   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi'
2026-05-04T19:39:39,059   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod'
2026-05-04T19:39:39,060   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi'
2026-05-04T19:39:39,062   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod'
2026-05-04T19:39:39,063   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi'
2026-05-04T19:39:39,064   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod'
2026-05-04T19:39:39,066   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi'
2026-05-04T19:39:39,067   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod'
2026-05-04T19:39:39,068   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi'
2026-05-04T19:39:39,070   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod'
2026-05-04T19:39:39,071   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi'
2026-05-04T19:39:39,072   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod'
2026-05-04T19:39:39,074   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi'
2026-05-04T19:39:39,075   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod'
2026-05-04T19:39:39,076   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi'
2026-05-04T19:39:39,078   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod'
2026-05-04T19:39:39,079   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi'
2026-05-04T19:39:39,081   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod'
2026-05-04T19:39:39,082   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi'
2026-05-04T19:39:39,083   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod'
2026-05-04T19:39:39,085   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi'
2026-05-04T19:39:39,086   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod'
2026-05-04T19:39:39,087   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi'
2026-05-04T19:39:39,089   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod'
2026-05-04T19:39:39,090   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi'
2026-05-04T19:39:39,091   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod'
2026-05-04T19:39:39,092   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi'
2026-05-04T19:39:39,094   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod'
2026-05-04T19:39:39,095   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi'
2026-05-04T19:39:39,096   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod'
2026-05-04T19:39:39,097   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi'
2026-05-04T19:39:39,098   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod'
2026-05-04T19:39:39,100   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi'
2026-05-04T19:39:39,101   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod'
2026-05-04T19:39:39,102   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi'
2026-05-04T19:39:39,103   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod'
2026-05-04T19:39:39,105   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi'
2026-05-04T19:39:39,106   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod'
2026-05-04T19:39:39,108   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi'
2026-05-04T19:39:39,109   adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt'
2026-05-04T19:39:39,110   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod'
2026-05-04T19:39:39,111   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi'
2026-05-04T19:39:39,112   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod'
2026-05-04T19:39:39,114   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi'
2026-05-04T19:39:39,122   adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in'
2026-05-04T19:39:39,124   adding 'htmd/share/builder/caps/ACE.cif'
2026-05-04T19:39:39,126   adding 'htmd/share/builder/caps/ACE.pdb'
2026-05-04T19:39:39,127   adding 'htmd/share/builder/caps/NHE.pdb'
2026-05-04T19:39:39,128   adding 'htmd/share/builder/caps/NME.cif'
2026-05-04T19:39:39,129   adding 'htmd/share/builder/caps/NME.pdb'
2026-05-04T19:39:39,131   adding 'htmd/share/builder/charmmfiles/Makefile'
2026-05-04T19:39:39,132   adding 'htmd/share/builder/charmmfiles/README.md'
2026-05-04T19:39:39,146   adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm'
2026-05-04T19:39:39,161   adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm'
2026-05-04T19:39:39,164   adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm'
2026-05-04T19:39:39,179   adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm'
2026-05-04T19:39:39,266   adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm'
2026-05-04T19:39:39,276   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm'
2026-05-04T19:39:39,279   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm'
2026-05-04T19:39:39,288   adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm'
2026-05-04T19:39:39,303   adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm'
2026-05-04T19:39:39,306   adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm'
2026-05-04T19:39:39,309   adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str'
2026-05-04T19:39:39,385   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str'
2026-05-04T19:39:39,395   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str'
2026-05-04T19:39:39,525   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str'
2026-05-04T19:39:39,552   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str'
2026-05-04T19:39:39,565   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str'
2026-05-04T19:39:39,569   adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str'
2026-05-04T19:39:39,608   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str'
2026-05-04T19:39:39,641   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str'
2026-05-04T19:39:39,748   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str'
2026-05-04T19:39:39,754   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str'
2026-05-04T19:39:39,767   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str'
2026-05-04T19:39:39,774   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str'
2026-05-04T19:39:39,866   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str'
2026-05-04T19:39:39,891   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str'
2026-05-04T19:39:39,911   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str'
2026-05-04T19:39:40,002   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str'
2026-05-04T19:39:40,013   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str'
2026-05-04T19:39:40,275   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str'
2026-05-04T19:39:40,392   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str'
2026-05-04T19:39:40,454   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str'
2026-05-04T19:39:40,470   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str'
2026-05-04T19:39:40,478   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str'
2026-05-04T19:39:40,495   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str'
2026-05-04T19:39:40,506   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str'
2026-05-04T19:39:40,513   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str'
2026-05-04T19:39:40,516   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str'
2026-05-04T19:39:40,518   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str'
2026-05-04T19:39:40,519   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str'
2026-05-04T19:39:40,521   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str'
2026-05-04T19:39:40,523   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str'
2026-05-04T19:39:40,536   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str'
2026-05-04T19:39:40,563   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str'
2026-05-04T19:39:40,583   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str'
2026-05-04T19:39:40,589   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str'
2026-05-04T19:39:40,718   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str'
2026-05-04T19:39:40,855   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str'
2026-05-04T19:39:40,865   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str'
2026-05-04T19:39:40,867   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str'
2026-05-04T19:39:40,880   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str'
2026-05-04T19:39:40,904   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str'
2026-05-04T19:39:40,908   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str'
2026-05-04T19:39:40,911   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str'
2026-05-04T19:39:40,914   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str'
2026-05-04T19:39:40,924   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str'
2026-05-04T19:39:41,122   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str'
2026-05-04T19:39:41,143   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str'
2026-05-04T19:39:41,148   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str'
2026-05-04T19:39:41,157   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str'
2026-05-04T19:39:41,167   adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf'
2026-05-04T19:39:41,176   adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf'
2026-05-04T19:39:41,183   adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf'
2026-05-04T19:39:41,209   adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf'
2026-05-04T19:39:41,512   adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf'
2026-05-04T19:39:41,590   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf'
2026-05-04T19:39:41,640   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf'
2026-05-04T19:39:41,648   adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf'
2026-05-04T19:39:41,657   adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf'
2026-05-04T19:39:41,659   adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf'
2026-05-04T19:39:41,661   adding 'htmd/share/membranebuilder/lipids/lipiddb.csv'
2026-05-04T19:39:41,663   adding 'htmd/share/membranebuilder/lipids/chl1/chl1.pdb'
2026-05-04T19:39:41,666   adding 'htmd/share/membranebuilder/lipids/popc/popc.pdb'
2026-05-04T19:39:41,669   adding 'htmd/share/membranebuilder/lipids/pope/pope.pdb'
2026-05-04T19:39:41,959   adding 'htmd/share/solvate/wat.pdb'
2026-05-04T19:39:41,974   adding 'acellera_htmd-2.7.0.dist-info/METADATA'
2026-05-04T19:39:41,975   adding 'acellera_htmd-2.7.0.dist-info/WHEEL'
2026-05-04T19:39:41,976   adding 'acellera_htmd-2.7.0.dist-info/entry_points.txt'
2026-05-04T19:39:41,977   adding 'acellera_htmd-2.7.0.dist-info/top_level.txt'
2026-05-04T19:39:41,983   adding 'acellera_htmd-2.7.0.dist-info/RECORD'
2026-05-04T19:39:42,050   removing build/bdist.linux-armv7l/wheel
2026-05-04T19:39:42,251   Building wheel for acellera-htmd (pyproject.toml): finished with status 'done'
2026-05-04T19:39:42,343   Created wheel for acellera-htmd: filename=acellera_htmd-2.7.0-py3-none-any.whl size=4285741 sha256=404da5fc40b9411322f14455aebe19e3e684401fd2608a4fcf08b1f88762f2db
2026-05-04T19:39:42,344   Stored in directory: /tmp/pip-ephem-wheel-cache-4_awmz1_/wheels/20/29/25/3435be30897b9e7c671f7abc6812d058c405388c5cea346044
2026-05-04T19:39:42,367 Successfully built acellera-htmd
2026-05-04T19:39:42,477 Removed build tracker: '/tmp/pip-build-tracker-yi37gfht'