2026-05-05T11:07:34,746 Created temporary directory: /tmp/pip-ephem-wheel-cache-cw6xg8z8 2026-05-05T11:07:34,748 Created temporary directory: /tmp/pip-build-tracker-13lde2fn 2026-05-05T11:07:34,749 Initialized build tracking at /tmp/pip-build-tracker-13lde2fn 2026-05-05T11:07:34,749 Created build tracker: /tmp/pip-build-tracker-13lde2fn 2026-05-05T11:07:34,749 Entered build tracker: /tmp/pip-build-tracker-13lde2fn 2026-05-05T11:07:34,750 Created temporary directory: /tmp/pip-wheel-90h8s59w 2026-05-05T11:07:34,753 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-05T11:07:34,756 Created temporary directory: /tmp/pip-ephem-wheel-cache-z1p1hwbz 2026-05-05T11:07:34,777 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-05T11:07:34,781 2 location(s) to search for versions of libsonata: 2026-05-05T11:07:34,781 * https://pypi.org/simple/libsonata/ 2026-05-05T11:07:34,781 * https://www.piwheels.org/simple/libsonata/ 2026-05-05T11:07:34,781 Fetching project page and analyzing links: https://pypi.org/simple/libsonata/ 2026-05-05T11:07:34,782 Getting page https://pypi.org/simple/libsonata/ 2026-05-05T11:07:34,783 Found index url https://pypi.org/simple 2026-05-05T11:07:35,058 Fetched page https://pypi.org/simple/libsonata/ as application/vnd.pypi.simple.v1+json 2026-05-05T11:07:35,146 Skipping link: No binaries permitted for libsonata: 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link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/43/35/2a6035c56587c469f566f58934e9862e84f7f2b57abf29addfef0cd6b28b/libsonata-0.0.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,155 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/be/54/2101e715781231ac29891c966d8f264bc28a9adbefe3ee2a3722cb611279/libsonata-0.0.2-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,155 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/31/9a/f730a6d76acb6cc3f63150e122b36d99e15689a9c3771fc2528219a68dfe/libsonata-0.0.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,156 Skipping link: No binaries permitted for libsonata: 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https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,158 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/aa/8e/1c4b7dcdc1fc9ef2e1af129ab8325cadee8905907857b345d3e7611caa7d/libsonata-0.0.2-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,158 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/ed/cb/6f09262c0f61e770bab0505f1799f65f2a1c1ba6239c7045d215fecd80cc/libsonata-0.0.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,159 Found link https://files.pythonhosted.org/packages/e6/85/09b8effcbb7da55d80afa4b60eb09fbf9eaa13bd03ba7590afb495d454de/libsonata-0.0.2.tar.gz (from https://pypi.org/simple/libsonata/), version: 0.0.2 2026-05-05T11:07:35,160 Skipping link: No binaries permitted for libsonata: 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https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,162 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/b6/02/3261964c678e2ed05b467963d7e48812fef22dd12eac95e3c3e3b7ccbc1d/libsonata-0.0.3-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,163 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/43/63/2b949a52a8a05a2d72e2567e257bdb510a6bcb8b27140a6c4d83f20e72ac/libsonata-0.0.3-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,164 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/03/9b/9676d8a49705be8e3b9aa35513128ec581b1a231418bdadb98cb80f34f7d/libsonata-0.0.3-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,164 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/20/ca/5bcd62c475eb0c40892bf494517ff1400793c43247f473e5f4a89b1e3ab2/libsonata-0.0.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,165 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/76/95/8d24395d8b4169a0379535c1494103b59a0dc889685bc17b2da11c9c048a/libsonata-0.0.3-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,165 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/a5/22/3a61e4853f3b52581c7833105c109f93707ff83f559e593259fadc7d0541/libsonata-0.0.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,166 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/08/a0/baa1e4ee480d7e3b1f548ff6062a2a6bb2e7e62ea0872e2cc514f6da4f52/libsonata-0.0.3-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,166 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/ef/6d/2df3b814ee1133587e954aa5e25bf80294c75b1250d5f2db68ab15c3313e/libsonata-0.0.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,167 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/b1/a8/0018356cee12f4bce0bf9e6a89da00c7207b34ba0278206e5b2d2d3988ab/libsonata-0.1.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,167 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/10/4c/08d1da604d4f870f1a880b3ba272cd053bbb21446b9fbc2b796ad592118f/libsonata-0.1.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,168 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/2e/b5/b5af8ffcf0f8abf3119f8a6aa84133a0ead70d2e0f69822892af05ac2376/libsonata-0.1.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,169 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/8b/c0/2eb5dd03f008b08bab336f56c38811039c1af0a14e14e9d0736c0aec6575/libsonata-0.1.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,169 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/6a/45/3e842fcd598173f40b593e56c1ca213c68f99bc1b3343666e6a22bf19b32/libsonata-0.1.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,170 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/72/e1/72dc9ac956101522c4f14ac4996214b032967c81d5635acf7ed7a017af30/libsonata-0.1.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,171 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/d0/58/f74c17d6f0fef9444fbe68958159b4810745052fdca33c0a9decc5e94593/libsonata-0.1.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,171 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/3e/82/f3da097e0619d333731b2c6adb4e955eede0aabdb08a93bfc3911bbdbc67/libsonata-0.1.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,172 Found link https://files.pythonhosted.org/packages/04/45/8cab82e154b64a54df0e89682e5e01522028f293f520a052a69a2353f6de/libsonata-0.1.0.tar.gz (from https://pypi.org/simple/libsonata/), version: 0.1.0 2026-05-05T11:07:35,173 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/58/39/578019ea77cd3fb183cbc03c258e3fae989566a7b6d51a03dbfb9e862db5/libsonata-0.1.1-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,173 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/2d/70/133b7eb7178a737837ecffd2f1460809ef975b486c2d023a0533a0f5b1f8/libsonata-0.1.1-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,174 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/c6/9c/5a318aae8b17902d5dfca5bcd9529f54769d03b57d565094e58792708fc9/libsonata-0.1.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,174 Skipping link: No binaries permitted for libsonata: 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https://files.pythonhosted.org/packages/af/3e/43a56eb604c0f2f0cd885abfb636903e48fe36f4bbc30968e82d12521ac2/libsonata-0.1.1-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,177 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/98/59/3863aa3e0de1d5b8a5900ae51fb8a98bcadb3d8e05b40666b794e33ea344/libsonata-0.1.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,178 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/49/7c/0c4360b287cf8f2cee7fd97c472a962f36fdc167e71cadcfb9af6c33b803/libsonata-0.1.1-cp37-cp37m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,178 Skipping link: No binaries permitted for libsonata: 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Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/43/21/c3f70c6baf7d79d7906c41e02061b1bdf58bd9af4ec35243dbf45dea0864/libsonata-0.1.8-cp36-cp36m-manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,207 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/18/1a/a71fe699576d202396ce8b32eeeb2c6518c999e7dc2076961c50932b4f96/libsonata-0.1.8-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,208 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/ac/a8/6d3fb78641b7c73150094509b887426586051c97d9b6155722d3e63d396b/libsonata-0.1.8-cp37-cp37m-manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-05T11:07:35,208 Skipping link: No binaries permitted for libsonata: 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2026-05-05T11:07:35,215 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/48/e3/97d0207ce465c8aede2b90959c5fb8be46e3ea27a05a38c4388374524d17/libsonata-0.1.10-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,215 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/de/11/580074305db6d7f2353ff385a11634f74eacb7000e8a7a381539732e38c4/libsonata-0.1.10-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,216 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/3b/f2/e0d6fb9de7bcaee9de5c2be4155bf4e1d04e11daae1a7317b7c2ffd71f53/libsonata-0.1.10-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,216 Skipping link: No binaries 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https://files.pythonhosted.org/packages/6a/63/3e51b527552ec39558c289b20f683ead0958d62773647bdb1aa8af21beb2/libsonata-0.1.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,219 Found link https://files.pythonhosted.org/packages/32/3f/5dfdf4781dc6a86e87f8ca1bd6904eafa7ef7b4ac1740f133a3a5ab737db/libsonata-0.1.10.tar.gz (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7), version: 0.1.10 2026-05-05T11:07:35,220 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/6e/61/68f784b7982b8bf7148b45b8c2e9a92661ea99b6b1576c174a936253f78d/libsonata-0.1.11-cp310-cp310-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,220 Skipping link: No binaries permitted for libsonata: 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https://files.pythonhosted.org/packages/e3/d4/b5abb650c406d22fa20e1cf6b40e5c2c62c51647a58c701134aae3b598ea/libsonata-0.1.11-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,225 Found link https://files.pythonhosted.org/packages/5e/c0/770f2a48d2171e62859fe0e07cd8bb3a4e9437ac25a6d07e5cec551be8c4/libsonata-0.1.11.tar.gz (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7), version: 0.1.11 2026-05-05T11:07:35,225 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/cb/2c/fda57d40b06fbf60ce5c0396c85b8300f76cbec901294922ab878b182498/libsonata-0.1.12-cp310-cp310-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,226 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/32/79/4dc1bc5d61a1259d71f4aa85323ad25debbef0eed99ca5e44292715ff89b/libsonata-0.1.12-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,227 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/c9/06/46bbb1a9394e404463fcb6b16dabf028ad0df3cc96154f88fb5c6aa4e768/libsonata-0.1.12-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,227 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/32/ca/65d2368a9431c8ad86ecf1ec1505f749b9463f3b048fd0c4b06436b7ca1c/libsonata-0.1.12-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,228 Skipping link: No binaries permitted for libsonata: 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https://files.pythonhosted.org/packages/98/bb/3715c4989b28efc22d3896cbc17aa63b7525d2f23ead8fa48283e9cc0791/libsonata-0.1.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,230 Found link https://files.pythonhosted.org/packages/63/2d/814ee9765ebdf0ad07257aa429e1a39f962b974783375395e150bfda4801/libsonata-0.1.12.tar.gz (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7), version: 0.1.12 2026-05-05T11:07:35,231 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/1a/9c/a6c5713a38200eeb11bcc809bf6bdc89577e1c01c80caae47198b3c5eaab/libsonata-0.1.13-cp310-cp310-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,232 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/05/15/6a3c11769b195afcc796d7e736c8a4663487d8452fe2d67e16e75446f5d6/libsonata-0.1.13-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,232 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/13/f2/f398fc60f799c8bca33030ae2f7ba403c1a11b226aaf2a4f04e56cc217b5/libsonata-0.1.13-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,233 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/b5/7c/cbcc61c728f4785ac5d787bb6180ee680e9dd8dbe6ff6df5771303ce3148/libsonata-0.1.13-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,234 Skipping link: No binaries permitted for libsonata: 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https://files.pythonhosted.org/packages/b2/d0/cb562862dc75249449deafd64eb75b6553b921a6fc9547968b30c66de5de/libsonata-0.1.13-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,236 Found link https://files.pythonhosted.org/packages/61/02/49176a592192c63f1368053d6eed8facb7df498eef4c2be09474b33813c5/libsonata-0.1.13.tar.gz (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7), version: 0.1.13 2026-05-05T11:07:35,237 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/7c/2b/8b508d5aae81a87d5cab8c519ef8d76ba4c91e0f0324b7950abfaf1d6980/libsonata-0.1.14-cp310-cp310-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.7) 2026-05-05T11:07:35,238 Skipping link: No binaries permitted for libsonata: 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https://files.pythonhosted.org/packages/fb/0b/bed379d5bdd7a1d38ebcbf3da15acb7c1eae6c871cb53f0270c363c202d3/libsonata-0.1.30-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,395 Found link https://files.pythonhosted.org/packages/23/2d/83007d6e633e1c549b60bac9e9ae8bbdc54105299ecde21b5e38937ba547/libsonata-0.1.30.tar.gz (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9), version: 0.1.30 2026-05-05T11:07:35,396 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/62/db/3231df143dab8b5576808cd433dde43675931dce0d48495b98c1abae9910/libsonata-0.1.31-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,396 Skipping link: No binaries permitted for libsonata: 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https://files.pythonhosted.org/packages/a6/f4/eca05a0028d2901d2e7bc3f99b1cad90c0c8569ed4ccb825739fbad99c11/libsonata-0.1.34-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,436 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/e7/9e/907f3cfd7d651f76705c5c69b61ee3f3126c8ce108f04d16239a5dd88050/libsonata-0.1.34-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,437 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/0c/06/6e0f51926e25b35019411906a9ac1449bb6becf8654db9ffdb87609fa401/libsonata-0.1.34-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,437 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/65/5a/5f08d0c49d0a026b072780a725e6ef803a57db03004bc47dd5b439c826f0/libsonata-0.1.34-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,438 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/9a/1a/888b77affa6fe2cd66896fb78efab82978fdd5cfa95372c71847696811cf/libsonata-0.1.34-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,438 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/c2/c0/561b095de2e19598882bd1effa06743e3230fb07323677b5019ba0c534a6/libsonata-0.1.34-cp313-cp313-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,439 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/56/e0/bce25872b99d131a1b60339e3ef5785b3c15ef958a913c8e1ef0ef78b4ec/libsonata-0.1.34-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,439 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/7d/c5/e20fd55e4806736e689763f8876d4f307f07daf04d2778854f439c74ef8b/libsonata-0.1.34-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,440 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/9b/96/b2d2987134ab678990d3653268b37da2c8c2045244a37a8080773a9b2ee9/libsonata-0.1.34-cp314-cp314-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,441 Found link https://files.pythonhosted.org/packages/67/8f/b32a05fa124a711bb32d80d596392c361dad967254c4efc043f63d07c7b9/libsonata-0.1.34.tar.gz 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2026-05-05T11:07:35,443 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/2d/1b/0d2587deb91e2ec4456d27c165b93aaaeebbfa28da18ab39c99a341720f4/libsonata-0.1.35-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,444 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/95/d5/3d22906cb4b254595974c4d0b671c6536185d9582f944ac159eecb0df2c1/libsonata-0.1.35-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,445 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/a4/0c/24ba6dcc7f30b5ae9e3bd21b49d1699d546288d148201e2be00d17c4e63e/libsonata-0.1.35-cp311-cp311-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,445 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/5a/8f/cffae895d67ebf122f8d88271b6189ded1ed25e7d2c0ba136ee6cb6a6fc5/libsonata-0.1.35-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,446 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/49/1f/286fa6a3b4334b2129a5526de13e195e5fbf0b3de9dfd2820d0a9e658ae8/libsonata-0.1.35-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,446 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/b8/64/79fd8341788478cd9b96a3fdded2538d5a62e6fc315e030a55948d872d05/libsonata-0.1.35-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,447 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/3c/85/42296097836e6737cd1de7eab37369ed5f28b828befb8db67498931c6c4b/libsonata-0.1.35-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,447 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/a5/58/fb139349a03f3960945f002421315162b8b5a08b7da0d856adc5688be4e6/libsonata-0.1.35-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,448 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/a6/7e/b365137f6cde47180a193526b234a14a0df969e797f69c37d8f0171def74/libsonata-0.1.35-cp313-cp313-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,448 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/c1/be/e24db90d60fcd8dc2194c92c290a55dd1446fc6f450d2ca2af10b5ad4406/libsonata-0.1.35-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,449 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/dd/a3/5dbda02deec309abca52933b409a78a9152ef72eb99cddb9af5a5a496bac/libsonata-0.1.35-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,449 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/13/f7/fe57f874a2044aacd5a79a80d910fdba9ef8a81b689518bd0eca61cdd799/libsonata-0.1.35-cp314-cp314-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,450 Found link https://files.pythonhosted.org/packages/3e/9a/4e532b54b5da98c98401d2d987a2bed3912156cd201fe8e826681054c04f/libsonata-0.1.35.tar.gz 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(requires-python:>=3.9) 2026-05-05T11:07:35,682 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.33-cp313-cp313-linux_armv7l.whl#sha256=fbcfdf8326db1ceb28c7d0338fb3e1c5c2bc08777ab481eb0b0c65d68aa226c5 (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,683 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.32-cp311-cp311-linux_armv6l.whl#sha256=25dfa8fc4c4815cd11c9693406e886eb34edd72ca84210c3dae77ed8ba4168eb (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,684 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.32-cp311-cp311-linux_armv7l.whl#sha256=25dfa8fc4c4815cd11c9693406e886eb34edd72ca84210c3dae77ed8ba4168eb (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,684 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.32-cp313-cp313-linux_armv6l.whl#sha256=435ccaecfe2acc467eff5df9c22581b920b20b983c6be6af5c34db16294641e5 (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,685 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.32-cp313-cp313-linux_armv7l.whl#sha256=435ccaecfe2acc467eff5df9c22581b920b20b983c6be6af5c34db16294641e5 (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,685 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.31-cp311-cp311-linux_armv6l.whl#sha256=4ea35cc491c4c78e3427d2fd7a2d7118ee3761b5860d3c475767ba123e002ebd (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-05T11:07:35,686 Skipping link: No binaries permitted for libsonata: 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https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp37-cp37m-linux_armv7l.whl#sha256=6bb8c369f4f539bdbc5e096d7ad56ef42ca4a08eeff4274a462f6d14888899c3 (from https://www.piwheels.org/simple/libsonata/) 2026-05-05T11:07:35,782 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp35-cp35m-linux_armv7l.whl#sha256=203af13c796d6096151043c6656f50f8a26c9b5c634c4085c7b7ced33d0f6704 (from https://www.piwheels.org/simple/libsonata/) 2026-05-05T11:07:35,783 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp35-cp35m-linux_armv6l.whl#sha256=203af13c796d6096151043c6656f50f8a26c9b5c634c4085c7b7ced33d0f6704 (from https://www.piwheels.org/simple/libsonata/) 2026-05-05T11:07:35,783 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp39-cp39-linux_armv6l.whl#sha256=fc1cc822ef384ad0e88e2719699879097bab54387b9521dc81432910da5d74b6 (from https://www.piwheels.org/simple/libsonata/) 2026-05-05T11:07:35,784 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp39-cp39-linux_armv7l.whl#sha256=fc1cc822ef384ad0e88e2719699879097bab54387b9521dc81432910da5d74b6 (from https://www.piwheels.org/simple/libsonata/) 2026-05-05T11:07:35,784 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=925b4b49068389e9077eecce0764b703c81b3e7be3fad084659f089d2ac9fbd9 (from https://www.piwheels.org/simple/libsonata/) 2026-05-05T11:07:35,785 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=925b4b49068389e9077eecce0764b703c81b3e7be3fad084659f089d2ac9fbd9 (from https://www.piwheels.org/simple/libsonata/) 2026-05-05T11:07:35,785 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp34-cp34m-linux_armv7l.whl#sha256=61fc7e05cf8d7d8748546aa9b11044f17bdc5f029ca2fe78e54c36a689ae0b25 (from https://www.piwheels.org/simple/libsonata/) 2026-05-05T11:07:35,786 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp34-cp34m-linux_armv6l.whl#sha256=61fc7e05cf8d7d8748546aa9b11044f17bdc5f029ca2fe78e54c36a689ae0b25 (from https://www.piwheels.org/simple/libsonata/) 2026-05-05T11:07:35,787 Skipping link: not a file: https://www.piwheels.org/simple/libsonata/ 2026-05-05T11:07:35,787 Skipping link: not a file: https://pypi.org/simple/libsonata/ 2026-05-05T11:07:35,812 Given no hashes to check 1 links for project 'libsonata': discarding no candidates 2026-05-05T11:07:35,831 Collecting libsonata==0.1.35 2026-05-05T11:07:35,834 Created temporary directory: /tmp/pip-unpack-79msiwdp 2026-05-05T11:07:35,982 Downloading libsonata-0.1.35.tar.gz (1.2 MB) 2026-05-05T11:07:36,827 Added libsonata==0.1.35 from https://files.pythonhosted.org/packages/3e/9a/4e532b54b5da98c98401d2d987a2bed3912156cd201fe8e826681054c04f/libsonata-0.1.35.tar.gz to build tracker '/tmp/pip-build-tracker-13lde2fn' 2026-05-05T11:07:36,833 Created temporary directory: /tmp/pip-build-env-dxwkvle0 2026-05-05T11:07:36,837 Installing build dependencies: started 2026-05-05T11:07:36,839 Running command pip subprocess to install build dependencies 2026-05-05T11:07:38,012 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-05T11:07:38,521 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-05T11:07:38,544 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-05T11:07:39,885 Collecting cmake 2026-05-05T11:07:40,558 Using cached cmake-4.3.2-py3-none-manylinux_2_31_armv7l.whl (26.6 MB) 2026-05-05T11:07:41,463 Collecting oldest-supported-numpy 2026-05-05T11:07:41,480 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.12.21-py3-none-any.whl (4.9 kB) 2026-05-05T11:07:42,905 Collecting setuptools 2026-05-05T11:07:42,987 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-05T11:07:43,358 Collecting setuptools_scm 2026-05-05T11:07:43,372 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-05T11:07:43,611 Collecting wheel 2026-05-05T11:07:43,627 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-05T11:07:44,841 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-05T11:07:44,849 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-05T11:07:44,856 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-05T11:07:44,862 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-05T11:07:44,869 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-05T11:07:45,585 Collecting numpy==1.23.2 2026-05-05T11:07:46,488 Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.2-cp311-cp311-linux_armv7l.whl (12.4 MB) 2026-05-05T11:07:46,894 Collecting vcs-versioning>=1.0.0.dev0 2026-05-05T11:07:46,909 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-05T11:07:47,090 Collecting packaging>=20 2026-05-05T11:07:47,108 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-05T11:07:50,422 Installing collected packages: setuptools, packaging, numpy, cmake, wheel, vcs-versioning, oldest-supported-numpy, setuptools_scm 2026-05-05T11:08:02,443 Creating /tmp/pip-build-env-dxwkvle0/overlay/local/bin 2026-05-05T11:08:02,445 changing mode of /tmp/pip-build-env-dxwkvle0/overlay/local/bin/f2py to 755 2026-05-05T11:08:02,447 changing mode of /tmp/pip-build-env-dxwkvle0/overlay/local/bin/f2py3 to 755 2026-05-05T11:08:02,448 changing mode of /tmp/pip-build-env-dxwkvle0/overlay/local/bin/f2py3.11 to 755 2026-05-05T11:08:10,139 changing mode of /tmp/pip-build-env-dxwkvle0/overlay/local/bin/ccmake to 755 2026-05-05T11:08:10,141 changing mode of /tmp/pip-build-env-dxwkvle0/overlay/local/bin/cmake to 755 2026-05-05T11:08:10,144 changing mode of /tmp/pip-build-env-dxwkvle0/overlay/local/bin/cpack to 755 2026-05-05T11:08:10,146 changing mode of /tmp/pip-build-env-dxwkvle0/overlay/local/bin/ctest to 755 2026-05-05T11:08:10,459 changing mode of /tmp/pip-build-env-dxwkvle0/overlay/local/bin/wheel to 755 2026-05-05T11:08:10,764 changing mode of /tmp/pip-build-env-dxwkvle0/overlay/local/bin/vcs-versioning to 755 2026-05-05T11:08:10,937 changing mode of /tmp/pip-build-env-dxwkvle0/overlay/local/bin/setuptools-scm to 755 2026-05-05T11:08:11,003 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2026-05-05T11:08:11,004 scipy 1.17.1 requires numpy<2.7,>=1.26.4, but you have numpy 1.23.2 which is incompatible. 2026-05-05T11:08:11,005 Successfully installed cmake-4.3.2 numpy-1.23.2 oldest-supported-numpy-2023.12.21 packaging-26.2 setuptools-82.0.1 setuptools_scm-10.0.5 vcs-versioning-1.1.1 wheel-0.47.0 2026-05-05T11:08:11,470 Installing build dependencies: finished with status 'done' 2026-05-05T11:08:11,477 Getting requirements to build wheel: started 2026-05-05T11:08:11,478 Running command Getting requirements to build wheel 2026-05-05T11:08:12,320 running egg_info 2026-05-05T11:08:12,329 writing python/libsonata.egg-info/PKG-INFO 2026-05-05T11:08:12,333 writing dependency_links to python/libsonata.egg-info/dependency_links.txt 2026-05-05T11:08:12,335 writing requirements to python/libsonata.egg-info/requires.txt 2026-05-05T11:08:12,336 writing top-level names to python/libsonata.egg-info/top_level.txt 2026-05-05T11:08:12,380 /tmp/pip-build-env-dxwkvle0/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-05T11:08:12,381 return get_active_overrides().subprocess_timeout 2026-05-05T11:08:12,390 listing git files failed - pretending there aren't any 2026-05-05T11:08:12,395 reading manifest file 'python/libsonata.egg-info/SOURCES.txt' 2026-05-05T11:08:12,454 reading manifest template 'MANIFEST.in' 2026-05-05T11:08:12,535 adding license file 'COPYING' 2026-05-05T11:08:12,535 adding license file 'COPYING.LESSER' 2026-05-05T11:08:12,536 adding license file 'AUTHORS.txt' 2026-05-05T11:08:12,548 writing manifest file 'python/libsonata.egg-info/SOURCES.txt' 2026-05-05T11:08:12,648 Getting requirements to build wheel: finished with status 'done' 2026-05-05T11:08:12,652 Created temporary directory: /tmp/pip-modern-metadata-6oi2p9e_ 2026-05-05T11:08:12,655 Preparing metadata (pyproject.toml): started 2026-05-05T11:08:12,656 Running command Preparing metadata (pyproject.toml) 2026-05-05T11:08:13,385 running dist_info 2026-05-05T11:08:13,402 creating /tmp/pip-modern-metadata-6oi2p9e_/libsonata.egg-info 2026-05-05T11:08:13,403 writing /tmp/pip-modern-metadata-6oi2p9e_/libsonata.egg-info/PKG-INFO 2026-05-05T11:08:13,407 writing dependency_links to /tmp/pip-modern-metadata-6oi2p9e_/libsonata.egg-info/dependency_links.txt 2026-05-05T11:08:13,409 writing requirements to /tmp/pip-modern-metadata-6oi2p9e_/libsonata.egg-info/requires.txt 2026-05-05T11:08:13,410 writing top-level names to /tmp/pip-modern-metadata-6oi2p9e_/libsonata.egg-info/top_level.txt 2026-05-05T11:08:13,412 writing manifest file '/tmp/pip-modern-metadata-6oi2p9e_/libsonata.egg-info/SOURCES.txt' 2026-05-05T11:08:13,450 /tmp/pip-build-env-dxwkvle0/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-05T11:08:13,451 return get_active_overrides().subprocess_timeout 2026-05-05T11:08:13,457 listing git files failed - pretending there aren't any 2026-05-05T11:08:13,462 reading manifest file '/tmp/pip-modern-metadata-6oi2p9e_/libsonata.egg-info/SOURCES.txt' 2026-05-05T11:08:13,464 reading manifest template 'MANIFEST.in' 2026-05-05T11:08:13,540 adding license file 'COPYING' 2026-05-05T11:08:13,540 adding license file 'COPYING.LESSER' 2026-05-05T11:08:13,541 adding license file 'AUTHORS.txt' 2026-05-05T11:08:13,549 writing manifest file '/tmp/pip-modern-metadata-6oi2p9e_/libsonata.egg-info/SOURCES.txt' 2026-05-05T11:08:13,550 creating '/tmp/pip-modern-metadata-6oi2p9e_/libsonata-0.1.35.dist-info' 2026-05-05T11:08:13,693 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-05T11:08:13,699 Source in /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b has version 0.1.35, which satisfies requirement libsonata==0.1.35 from https://files.pythonhosted.org/packages/3e/9a/4e532b54b5da98c98401d2d987a2bed3912156cd201fe8e826681054c04f/libsonata-0.1.35.tar.gz 2026-05-05T11:08:13,700 Removed libsonata==0.1.35 from https://files.pythonhosted.org/packages/3e/9a/4e532b54b5da98c98401d2d987a2bed3912156cd201fe8e826681054c04f/libsonata-0.1.35.tar.gz from build tracker '/tmp/pip-build-tracker-13lde2fn' 2026-05-05T11:08:13,707 Created temporary directory: /tmp/pip-unpack-2sgl_jhb 2026-05-05T11:08:13,707 Building wheels for collected packages: libsonata 2026-05-05T11:08:13,712 Created temporary directory: /tmp/pip-wheel-49nnxb9l 2026-05-05T11:08:13,713 Destination directory: /tmp/pip-wheel-49nnxb9l 2026-05-05T11:08:13,715 Building wheel for libsonata (pyproject.toml): started 2026-05-05T11:08:13,716 Running command Building wheel for libsonata (pyproject.toml) 2026-05-05T11:08:14,428 running bdist_wheel 2026-05-05T11:08:14,451 running build 2026-05-05T11:08:14,452 running build_py 2026-05-05T11:08:14,454 creating build/lib.linux-armv7l-cpython-311/libsonata 2026-05-05T11:08:14,456 copying python/libsonata/__init__.py -> build/lib.linux-armv7l-cpython-311/libsonata 2026-05-05T11:08:14,459 running build_ext 2026-05-05T11:08:15,381 -- The C compiler identification is GNU 12.2.0 2026-05-05T11:08:15,739 -- The CXX compiler identification is GNU 12.2.0 2026-05-05T11:08:15,782 -- Detecting C compiler ABI info 2026-05-05T11:08:16,094 -- Detecting C compiler ABI info - done 2026-05-05T11:08:16,160 -- Check for working C compiler: /usr/bin/cc - skipped 2026-05-05T11:08:16,162 -- Detecting C compile features 2026-05-05T11:08:16,164 -- Detecting C compile features - done 2026-05-05T11:08:16,226 -- Detecting CXX compiler ABI info 2026-05-05T11:08:16,614 -- Detecting CXX compiler ABI info - done 2026-05-05T11:08:16,682 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2026-05-05T11:08:16,684 -- Detecting CXX compile features 2026-05-05T11:08:16,687 -- Detecting CXX compile features - done 2026-05-05T11:08:17,879 -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libpthread.a;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.8") 2026-05-05T11:08:17,904 -- {fmt} version: 11.0.2 2026-05-05T11:08:17,905 -- Build type: Release 2026-05-05T11:08:17,958 -- pybind11 v3.0.1 2026-05-05T11:08:18,809 -- Found Python: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.8") found components: Interpreter Development.Module Development.Embed 2026-05-05T11:08:18,958 Using compatibility mode for Python, set PYBIND11_FINDPYTHON to NEW/OLD to silence this message 2026-05-05T11:08:18,963 -- Performing Test HAS_FLTO_AUTO 2026-05-05T11:08:19,574 -- Performing Test HAS_FLTO_AUTO - Success 2026-05-05T11:08:19,682 -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development.Module 2026-05-05T11:08:19,686 -- Configuring done (4.6s) 2026-05-05T11:08:19,862 -- Generating done (0.2s) 2026-05-05T11:08:19,867 -- Build files have been written to: /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/build/temp.linux-armv7l-cpython-311 2026-05-05T11:08:20,375 [ 5%] Building CXX object CMakeFiles/sonata_static.dir/src/common.cpp.o 2026-05-05T11:08:20,378 [ 11%] Building CXX object CMakeFiles/sonata_static.dir/src/compartment_sets.cpp.o 2026-05-05T11:08:20,384 [ 23%] Building CXX object CMakeFiles/sonata_static.dir/src/edge_index.cpp.o 2026-05-05T11:08:20,385 [ 23%] Building CXX object CMakeFiles/sonata_static.dir/src/config.cpp.o 2026-05-05T11:08:21,534 [ 29%] Building CXX object CMakeFiles/sonata_static.dir/src/edges.cpp.o 2026-05-05T11:08:31,432 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2026-05-05T11:08:31,433 from /usr/include/c++/12/algorithm:61, 2026-05-05T11:08:31,434 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:12, 2026-05-05T11:08:31,435 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../H5DataType.hpp:17, 2026-05-05T11:08:31,436 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:15, 2026-05-05T11:08:31,438 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:13, 2026-05-05T11:08:31,439 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/H5File.hpp:16, 2026-05-05T11:08:31,440 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/hdf5_reader.h:7, 2026-05-05T11:08:31,441 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/population.h:22, 2026-05-05T11:08:31,442 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.h:12, 2026-05-05T11:08:31,443 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.cpp:10: 2026-05-05T11:08:31,444 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:31,445 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:31,446 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:08:31,447 | ^~~~~~~~~~~~~ 2026-05-05T11:08:31,484 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:31,485 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:31,486 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-05T11:08:31,487 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:08:31,488 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:31,569 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:31,570 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:31,571 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:08:31,572 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:08:31,573 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:31,574 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:31,575 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:08:31,576 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:31,728 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-05-05T11:08:31,729 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:31,730 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-05-05T11:08:31,731 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:31,776 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:31,778 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:31,779 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-05T11:08:31,780 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:08:31,781 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:31,850 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:31,851 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:31,852 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:08:31,853 | ^~~~~~~~~~~~~ 2026-05-05T11:08:32,582 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:32,583 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:32,584 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:08:32,585 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:08:32,586 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:32,587 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:32,588 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:08:32,589 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:35,611 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:08:35,611 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/population.h:20: 2026-05-05T11:08:35,612 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:08:35,613 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:08:35,614 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:08:35,615 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:35,751 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:08:35,752 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:08:35,753 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:79:14: 2026-05-05T11:08:35,755 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:35,756 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:08:35,757 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:08:35,758 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:08:35,759 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:35,759 1939 | __comp); 2026-05-05T11:08:35,760 | ~~~~~~~ 2026-05-05T11:08:35,761 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:08:35,762 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:08:35,763 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:08:35,764 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:79:14: 2026-05-05T11:08:35,765 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:35,766 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:08:35,767 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:35,768 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:35,769 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:08:35,770 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:35,771 In file included from /usr/include/c++/12/vector:64: 2026-05-05T11:08:35,772 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:35,773 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:89:18: 2026-05-05T11:08:35,774 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:35,775 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:08:35,776 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:08:35,777 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:35,778 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:99:26: 2026-05-05T11:08:35,779 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:35,780 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:08:35,781 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:08:36,174 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:08:36,175 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:08:36,176 inlined from ‘bbp::sonata::Selection bbp::sonata::edge_index::resolve(const HighFive::Group&, const std::vector&, const bbp::sonata::Hdf5Reader&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.cpp:68:14: 2026-05-05T11:08:36,177 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:36,178 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:08:36,179 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:08:36,180 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:08:36,181 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:36,182 1939 | __comp); 2026-05-05T11:08:36,183 | ~~~~~~~ 2026-05-05T11:08:36,184 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:08:36,185 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:08:36,187 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:08:36,188 inlined from ‘bbp::sonata::Selection bbp::sonata::edge_index::resolve(const HighFive::Group&, const std::vector&, const bbp::sonata::Hdf5Reader&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.cpp:68:14: 2026-05-05T11:08:36,189 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:36,190 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:08:36,191 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:36,192 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:36,193 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:08:36,194 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:36,441 In file included from /usr/include/c++/12/algorithm:61, 2026-05-05T11:08:36,442 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:12, 2026-05-05T11:08:36,442 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../H5DataType.hpp:17, 2026-05-05T11:08:36,443 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:15, 2026-05-05T11:08:36,444 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:13, 2026-05-05T11:08:36,445 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/H5File.hpp:16, 2026-05-05T11:08:36,446 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/hdf5_reader.h:7, 2026-05-05T11:08:36,447 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/population.h:22, 2026-05-05T11:08:36,447 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.h:12, 2026-05-05T11:08:36,448 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edges.cpp:10: 2026-05-05T11:08:36,449 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-05-05T11:08:36,450 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:36,451 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-05-05T11:08:36,452 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:36,586 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:36,587 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:36,588 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-05T11:08:36,589 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:08:36,590 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:36,632 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:08:36,633 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:08:36,634 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:08:36,635 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:36,664 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-05-05T11:08:36,665 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:36,666 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:36,667 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:08:36,668 | ^~~~~~~~~~~~~ 2026-05-05T11:08:39,043 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:39,044 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:08:39,045 inlined from ‘std::unordered_map > > bbp::sonata::edge_index::{anonymous}::_groupNodeRanges(const std::vector&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.cpp:104:41, 2026-05-05T11:08:39,046 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.cpp:137:49: 2026-05-05T11:08:39,047 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:39,048 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:08:39,049 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:39,050 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:39,051 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:08:39,052 inlined from ‘std::unordered_map > > bbp::sonata::edge_index::{anonymous}::_groupNodeRanges(const std::vector&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.cpp:110:33, 2026-05-05T11:08:39,053 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.cpp:137:49: 2026-05-05T11:08:39,054 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:39,055 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:08:39,056 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:39,057 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:39,058 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:08:39,059 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.cpp:156:35: 2026-05-05T11:08:39,060 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:39,061 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:08:39,062 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:39,063 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:39,064 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:08:39,065 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.cpp:159:35: 2026-05-05T11:08:39,066 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:39,067 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:08:39,068 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:39,069 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:39,070 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:08:39,071 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2026-05-05T11:08:39,072 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:405:18, 2026-05-05T11:08:39,073 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-05-05T11:08:39,075 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = true; _II = array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-05-05T11:08:39,076 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-05-05T11:08:39,077 inlined from ‘_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:652:38, 2026-05-05T11:08:39,078 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edge_index.cpp:161:22: 2026-05-05T11:08:39,079 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:39,080 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:08:39,081 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:39,697 [ 35%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o 2026-05-05T11:08:41,436 [ 41%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_reader.cpp.o 2026-05-05T11:08:42,096 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:08:42,097 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/population.h:20: 2026-05-05T11:08:42,098 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:08:42,100 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:08:42,101 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:08:42,102 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:43,215 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-05-05T11:08:43,216 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-05T11:08:43,286 In file included from /usr/include/c++/12/vector:64: 2026-05-05T11:08:43,287 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:08:43,289 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-05-05T11:08:43,290 inlined from ‘_OutputIterator std::__set_intersection(_InputIterator1, _InputIterator1, _InputIterator2, _InputIterator2, _OutputIterator, _Compare) [with _InputIterator1 = __gnu_cxx::__normal_iterator >; _InputIterator2 = __gnu_cxx::__normal_iterator >; _OutputIterator = back_insert_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:5224:16, 2026-05-05T11:08:43,291 inlined from ‘_OIter std::set_intersection(_IIter1, _IIter1, _IIter2, _IIter2, _OIter) [with _IIter1 = __gnu_cxx::__normal_iterator >; _IIter2 = __gnu_cxx::__normal_iterator >; _OIter = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:5274:48, 2026-05-05T11:08:43,292 inlined from ‘bbp::sonata::Selection bbp::sonata::EdgePopulation::connectingEdges(const std::vector&, const std::vector&) const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/edges.cpp:99:21: 2026-05-05T11:08:43,293 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:43,294 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:08:43,294 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:08:45,204 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2026-05-05T11:08:45,205 from /usr/include/c++/12/algorithm:61, 2026-05-05T11:08:45,206 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/../extlib/filesystem.hpp:192, 2026-05-05T11:08:45,207 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:1: 2026-05-05T11:08:45,208 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:45,209 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:45,210 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:08:45,211 | ^~~~~~~~~~~~~ 2026-05-05T11:08:45,268 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:45,269 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:45,270 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-05T11:08:45,271 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:08:45,272 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:45,426 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:45,427 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:45,428 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:08:45,429 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:08:45,430 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:45,431 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:45,432 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:08:45,433 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:49,676 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:08:49,677 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/../extlib/filesystem.hpp:207: 2026-05-05T11:08:49,678 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {bbp::sonata::CompartmentLocation}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’: 2026-05-05T11:08:49,679 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-05T11:08:49,680 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:08:49,681 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:49,744 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-05-05T11:08:49,745 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-05T11:08:49,840 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const bbp::sonata::CompartmentLocation&}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’: 2026-05-05T11:08:49,841 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-05T11:08:49,974 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const bbp::sonata::CompartmentLocation&}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’, 2026-05-05T11:08:49,975 inlined from ‘std::unique_ptr bbp::sonata::detail::CompartmentSet::filter(const bbp::sonata::Selection&) const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:255:38, 2026-05-05T11:08:49,976 inlined from ‘bbp::sonata::CompartmentSet bbp::sonata::CompartmentSet::filter(const bbp::sonata::Selection&) const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:481:40: 2026-05-05T11:08:49,977 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:49,979 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:08:49,980 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:51,143 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:08:51,144 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:08:51,145 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:08:51,146 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:51,198 In file included from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/hdf5_reader.h:6, 2026-05-05T11:08:51,199 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/population.h:22, 2026-05-05T11:08:51,200 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:18, 2026-05-05T11:08:51,201 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:3: 2026-05-05T11:08:51,202 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’: 2026-05-05T11:08:51,203 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:51,204 65 | Selection Selection::fromValues(Iterator first, Iterator last) { 2026-05-05T11:08:51,205 | ^~~~~~~~~ 2026-05-05T11:08:51,206 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:08:51,206 In file included from /usr/include/c++/12/vector:64: 2026-05-05T11:08:51,207 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:51,208 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:75:33: 2026-05-05T11:08:51,210 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:51,210 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:08:51,211 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:08:51,212 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:51,213 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:84:25: 2026-05-05T11:08:51,214 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:51,216 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:08:51,230 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:08:52,066 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:52,068 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:52,069 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:08:52,070 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:08:52,071 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:52,072 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:52,073 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:08:52,074 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:52,290 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:08:52,291 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:08:52,292 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:79:14: 2026-05-05T11:08:52,293 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:52,294 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:08:52,295 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:08:52,296 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:08:52,297 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:52,298 1939 | __comp); 2026-05-05T11:08:52,299 | ~~~~~~~ 2026-05-05T11:08:52,300 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:08:52,302 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:08:52,303 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:08:52,304 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:79:14: 2026-05-05T11:08:52,305 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:52,305 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:08:52,306 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:52,307 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:52,308 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:08:52,309 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:52,310 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:52,311 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:89:18: 2026-05-05T11:08:52,312 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:52,313 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:08:52,314 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:08:52,315 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:08:52,316 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:99:26: 2026-05-05T11:08:52,317 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:52,318 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:08:52,319 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:08:54,303 In file included from /usr/include/c++/12/set:60, 2026-05-05T11:08:54,304 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:14: 2026-05-05T11:08:54,305 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-05T11:08:54,306 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:08:54,307 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-05-05T11:08:54,308 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:54,380 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-05T11:08:54,381 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:08:54,382 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-05-05T11:08:54,383 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:54,442 In file included from /usr/include/c++/12/map:61, 2026-05-05T11:08:54,443 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:61, 2026-05-05T11:08:54,444 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:19: 2026-05-05T11:08:54,445 /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-05T11:08:54,446 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:08:54,447 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:08:54,448 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:54,449 512 | std::tuple(__k), 2026-05-05T11:08:54,450 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:54,451 513 | std::tuple<>()); 2026-05-05T11:08:54,452 | ~~~~~~~~~~~~~~~ 2026-05-05T11:08:54,506 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-05T11:08:54,507 inlined from ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5599:76: 2026-05-05T11:08:54,508 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:08:54,509 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:08:54,510 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:54,511 512 | std::tuple(__k), 2026-05-05T11:08:54,512 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:54,513 513 | std::tuple<>()); 2026-05-05T11:08:54,514 | ~~~~~~~~~~~~~~~ 2026-05-05T11:08:56,577 In file included from /usr/include/c++/12/algorithm:61, 2026-05-05T11:08:56,578 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:12, 2026-05-05T11:08:56,579 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../H5DataType.hpp:17, 2026-05-05T11:08:56,580 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:15, 2026-05-05T11:08:56,581 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:13, 2026-05-05T11:08:56,582 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/H5File.hpp:16, 2026-05-05T11:08:56,583 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/hdf5_reader.h:7, 2026-05-05T11:08:56,584 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/hdf5_reader.cpp:1: 2026-05-05T11:08:56,585 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-05-05T11:08:56,586 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:56,586 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-05-05T11:08:56,587 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:56,625 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:56,626 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:56,626 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-05T11:08:56,627 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:08:56,628 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:56,693 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-05-05T11:08:56,694 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:56,695 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:56,696 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:08:56,697 | ^~~~~~~~~~~~~ 2026-05-05T11:08:57,428 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:08:57,429 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:57,430 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:08:57,431 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:08:57,432 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:57,433 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:08:57,433 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:08:57,434 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:08:59,193 [ 47%] Building CXX object CMakeFiles/sonata_static.dir/src/node_sets.cpp.o 2026-05-05T11:09:00,091 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:09:00,092 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:218:33: 2026-05-05T11:09:00,093 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:00,094 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:09:00,095 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:09:00,096 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:09:00,097 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:09:00,098 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:221:13: 2026-05-05T11:09:00,099 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:00,100 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:09:00,100 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:09:00,101 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:09:00,102 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:00,103 1939 | __comp); 2026-05-05T11:09:00,104 | ~~~~~~~ 2026-05-05T11:09:00,104 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:09:00,106 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:09:00,106 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:09:00,108 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:221:13: 2026-05-05T11:09:00,109 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:00,110 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:09:00,111 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:00,112 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:00,113 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:09:00,114 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:00,115 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp: In member function ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’: 2026-05-05T11:09:00,116 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:222:66: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:00,117 222 | return Selection::fromValues(result.begin(), result.end()); 2026-05-05T11:09:00,118 | ^ 2026-05-05T11:09:00,231 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:00,232 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:00,233 175 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:00,234 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:00,289 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:09:00,290 inlined from ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20568:66: 2026-05-05T11:09:00,291 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:00,292 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2026-05-05T11:09:00,293 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:00,504 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:00,505 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:00,506 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:00,507 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:00,633 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:09:00,634 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:09:00,635 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5423:41: 2026-05-05T11:09:00,636 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:00,637 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:00,638 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:00,715 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:09:00,716 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:09:00,717 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5397:41: 2026-05-05T11:09:00,718 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:00,719 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:00,720 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:00,804 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:00,805 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:00,806 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:00,807 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:01,495 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:09:01,496 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/hdf5_reader.h:4: 2026-05-05T11:09:01,497 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:09:01,498 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:09:01,499 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:01,500 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:01,646 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:09:01,647 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:09:01,649 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:79:14: 2026-05-05T11:09:01,650 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:01,651 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:09:01,652 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:09:01,653 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:09:01,654 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:01,654 1939 | __comp); 2026-05-05T11:09:01,655 | ~~~~~~~ 2026-05-05T11:09:01,656 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:09:01,657 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:09:01,658 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:09:01,659 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:79:14: 2026-05-05T11:09:01,660 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:01,662 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:09:01,663 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:01,664 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:01,665 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:09:01,666 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:01,667 In file included from /usr/include/c++/12/vector:64: 2026-05-05T11:09:01,668 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:09:01,669 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:89:18: 2026-05-05T11:09:01,670 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:01,671 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:09:01,672 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:09:01,673 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:09:01,674 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:99:26: 2026-05-05T11:09:01,675 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:01,676 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:09:01,677 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:09:12,797 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bbp::sonata::CompartmentLocation}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’, 2026-05-05T11:09:12,797 inlined from ‘bbp::sonata::detail::CompartmentSet::CompartmentSet(const nlohmann::json&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:154:48: 2026-05-05T11:09:12,798 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:12,799 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:12,800 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:16,265 [ 52%] Building CXX object CMakeFiles/sonata_static.dir/src/nodes.cpp.o 2026-05-05T11:09:17,111 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-05T11:09:17,112 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](const typename object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20085:46, 2026-05-05T11:09:17,113 inlined from ‘nlohmann::json bbp::sonata::detail::CompartmentSets::to_json() const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:350:26, 2026-05-05T11:09:17,114 inlined from ‘std::string bbp::sonata::CompartmentSets::toJSON() const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/compartment_sets.cpp:564:26: 2026-05-05T11:09:17,115 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:09:17,116 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:09:17,117 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:17,118 512 | std::tuple(__k), 2026-05-05T11:09:17,118 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:17,119 513 | std::tuple<>()); 2026-05-05T11:09:17,120 | ~~~~~~~~~~~~~~~ 2026-05-05T11:09:17,121 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:09:18,374 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:09:18,376 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:09:18,376 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::string(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5385:21, 2026-05-05T11:09:18,377 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10428:29: 2026-05-05T11:09:18,378 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:18,380 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:18,381 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:21,224 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:09:21,226 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:09:21,227 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::string(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5385:21, 2026-05-05T11:09:21,228 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::input_stream_adapter]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10428:29: 2026-05-05T11:09:21,229 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:21,230 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:21,231 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:22,720 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:09:22,721 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/config.h:17, 2026-05-05T11:09:22,722 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/config.cpp:12: 2026-05-05T11:09:22,723 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::EField}; _Tp = bbp::sonata::SimulationConfig::EField; _Alloc = std::allocator]’: 2026-05-05T11:09:22,724 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-05T11:09:22,725 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:22,726 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:22,926 [ 58%] Building CXX object CMakeFiles/sonata_static.dir/src/population.cpp.o 2026-05-05T11:09:24,959 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::ConnectionOverride}; _Tp = bbp::sonata::SimulationConfig::ConnectionOverride; _Alloc = std::allocator]’: 2026-05-05T11:09:24,960 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-05T11:09:33,901 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:09:33,902 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/../extlib/filesystem.hpp:207, 2026-05-05T11:09:33,903 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/node_sets.cpp:8: 2026-05-05T11:09:33,904 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: 2026-05-05T11:09:33,905 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:09:33,906 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:33,907 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:35,646 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:09:35,647 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:09:35,708 In file included from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/hdf5_reader.h:6, 2026-05-05T11:09:35,709 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/population.h:22, 2026-05-05T11:09:35,710 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:18, 2026-05-05T11:09:35,711 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/node_sets.cpp:13: 2026-05-05T11:09:35,712 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’: 2026-05-05T11:09:35,713 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:35,714 65 | Selection Selection::fromValues(Iterator first, Iterator last) { 2026-05-05T11:09:35,715 | ^~~~~~~~~ 2026-05-05T11:09:35,716 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:35,717 In file included from /usr/include/c++/12/vector:64: 2026-05-05T11:09:35,718 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:09:35,719 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:75:33: 2026-05-05T11:09:35,720 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:35,721 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:09:35,722 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:09:35,723 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:09:35,724 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:84:25: 2026-05-05T11:09:35,725 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:35,726 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:09:35,728 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:09:35,775 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/node_sets.cpp: In member function ‘virtual bbp::sonata::Selection bbp::sonata::detail::NodeSetBasicNodeIds::materialize(const bbp::sonata::detail::NodeSets&, const bbp::sonata::NodePopulation&) const’: 2026-05-05T11:09:35,777 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/node_sets.cpp:235:54: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:35,778 235 | return np.selectAll() & Selection::fromValues(values_.begin(), values_.end()); 2026-05-05T11:09:35,779 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:39,629 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-05-05T11:09:39,630 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-05T11:09:39,631 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:39,632 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:42,223 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:42,224 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:42,225 175 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:42,226 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:42,283 In file included from /usr/include/c++/12/vector:64: 2026-05-05T11:09:42,284 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:09:42,285 inlined from ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20568:66: 2026-05-05T11:09:42,286 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:42,287 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2026-05-05T11:09:42,288 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:42,479 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:42,480 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:42,481 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:42,482 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:42,580 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:42,581 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:42,629 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:42,630 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:42,686 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:42,687 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:45,192 In file included from /usr/include/c++/12/set:60, 2026-05-05T11:09:45,194 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/config.h:14: 2026-05-05T11:09:45,195 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-05T11:09:45,196 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:09:45,197 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-05-05T11:09:45,198 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:45,277 In file included from /usr/include/c++/12/regex:54, 2026-05-05T11:09:45,278 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/config.cpp:15: 2026-05-05T11:09:45,279 /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-05T11:09:45,280 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:09:45,281 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:09:45,282 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:45,283 512 | std::tuple(__k), 2026-05-05T11:09:45,283 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:45,284 513 | std::tuple<>()); 2026-05-05T11:09:45,285 | ~~~~~~~~~~~~~~~ 2026-05-05T11:09:45,345 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-05T11:09:45,346 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](const typename object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20085:46: 2026-05-05T11:09:45,347 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:09:45,348 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:09:45,349 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:45,350 512 | std::tuple(__k), 2026-05-05T11:09:45,351 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:45,352 513 | std::tuple<>()); 2026-05-05T11:09:45,353 | ~~~~~~~~~~~~~~~ 2026-05-05T11:09:45,709 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-05T11:09:45,710 inlined from ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5599:76: 2026-05-05T11:09:45,711 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:09:45,712 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:09:45,712 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:45,713 512 | std::tuple(__k), 2026-05-05T11:09:45,714 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:45,715 513 | std::tuple<>()); 2026-05-05T11:09:45,716 | ~~~~~~~~~~~~~~~ 2026-05-05T11:09:45,753 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2026-05-05T11:09:45,753 from /usr/include/c++/12/algorithm:61, 2026-05-05T11:09:45,754 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:12, 2026-05-05T11:09:45,755 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../H5DataType.hpp:17, 2026-05-05T11:09:45,756 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:15, 2026-05-05T11:09:45,757 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:13, 2026-05-05T11:09:45,758 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/H5File.hpp:16, 2026-05-05T11:09:45,759 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/hdf5_reader.h:7, 2026-05-05T11:09:45,760 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/population.h:22, 2026-05-05T11:09:45,761 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.hpp:14, 2026-05-05T11:09:45,762 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:10: 2026-05-05T11:09:45,763 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:09:45,763 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:45,764 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:09:45,765 | ^~~~~~~~~~~~~ 2026-05-05T11:09:45,804 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:09:45,805 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:09:46,067 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’: 2026-05-05T11:09:46,068 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:46,069 175 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:46,070 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:46,139 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-05T11:09:46,140 inlined from ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = nlohmann::ordered_map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20568:66: 2026-05-05T11:09:46,141 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:46,142 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2026-05-05T11:09:46,143 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:46,210 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:09:46,212 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:46,213 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-05T11:09:46,214 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:09:46,215 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:46,246 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:09:46,247 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:09:46,248 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:09:46,336 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’: 2026-05-05T11:09:46,337 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:46,338 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:46,339 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:46,428 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’: 2026-05-05T11:09:46,429 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:46,474 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’: 2026-05-05T11:09:46,475 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:46,523 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’: 2026-05-05T11:09:46,524 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:46,910 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:09:46,911 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:09:46,912 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:09:46,913 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:09:46,914 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:09:46,915 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:09:46,915 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:09:46,916 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:47,007 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:09:47,008 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:47,009 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:09:47,010 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:09:47,010 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:47,011 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:47,012 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:09:47,013 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:47,192 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:47,193 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:47,194 175 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:47,195 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:47,245 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:09:47,246 inlined from ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20568:66: 2026-05-05T11:09:47,247 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:47,248 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2026-05-05T11:09:47,249 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:47,423 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:47,424 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:47,424 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:47,425 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:47,522 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:09:47,523 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:09:47,524 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5397:41: 2026-05-05T11:09:47,524 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:47,525 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:47,526 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:47,601 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:09:47,602 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:09:47,603 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5423:41: 2026-05-05T11:09:47,604 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:47,605 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:47,606 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:47,674 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:09:47,675 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:09:47,676 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:47,677 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:47,725 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:09:47,726 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58: 2026-05-05T11:09:47,727 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:09:47,728 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:47,729 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:47,730 In file included from /usr/include/c++/12/algorithm:61, 2026-05-05T11:09:47,730 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:10: 2026-05-05T11:09:47,731 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-05-05T11:09:47,733 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:47,733 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-05-05T11:09:47,734 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:48,579 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:09:48,580 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:48,581 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-05T11:09:48,582 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:09:48,583 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:48,653 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-05-05T11:09:48,654 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:09:48,655 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:09:48,656 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:09:48,657 | ^~~~~~~~~~~~~ 2026-05-05T11:09:52,711 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:09:52,712 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/population.h:20: 2026-05-05T11:09:52,713 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-05-05T11:09:52,714 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-05T11:09:52,715 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:52,716 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:52,995 In file included from /usr/include/c++/12/vector:64: 2026-05-05T11:09:52,996 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:09:52,997 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned int; UnaryPredicate = {anonymous}::_filterStringAttribute >(const std::string&, const std::vector >&) const:: >(const bbp::sonata::NodePopulation&, std::string, bbp::sonata::NodePopulation::matchAttributeValues >(const std::string&, const std::vector >&) const::)::]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:09:52,998 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_filterStringAttribute(const bbp::sonata::NodePopulation&, std::string, UnaryPredicate) [with UnaryPredicate = bbp::sonata::NodePopulation::matchAttributeValues >(const std::string&, const std::vector >&) const::]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:84:10, 2026-05-05T11:09:52,999 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = std::__cxx11::basic_string]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:147:57: 2026-05-05T11:09:53,000 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:53,001 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:09:53,002 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:09:53,264 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:09:53,265 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:16, 2026-05-05T11:09:53,266 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:14: 2026-05-05T11:09:53,267 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:09:53,268 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:09:53,269 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:09:53,270 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:53,516 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-05-05T11:09:53,517 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-05T11:09:53,577 In file included from /usr/include/c++/12/vector:64: 2026-05-05T11:09:53,578 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:09:53,579 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = std::__cxx11::basic_string; UnaryPredicate = std::function)>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26: 2026-05-05T11:09:53,579 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:53,580 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:09:53,581 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:09:53,709 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::ConnectionOverride}; _Tp = bbp::sonata::SimulationConfig::ConnectionOverride; _Alloc = std::allocator]’, 2026-05-05T11:09:53,710 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = bbp::sonata::SimulationConfig::ConnectionOverride; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:09:53,711 inlined from ‘std::vector bbp::sonata::SimulationConfig::Parser::parseConnectionOverrides() const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/config.cpp:1548:29: 2026-05-05T11:09:53,712 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:53,713 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:53,713 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:59,929 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’, 2026-05-05T11:09:59,930 inlined from ‘bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/node_sets.cpp:504:36: 2026-05-05T11:09:59,931 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:09:59,932 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:59,933 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:09:59,934 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:09:59,935 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:09:59,936 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2026-05-05T11:09:59,937 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator >; _UnaryOperation = bbp::sonata::detail::_dispatch_node(const std::string&, const json&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12, 2026-05-05T11:09:59,938 inlined from ‘bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/node_sets.cpp:509:31: 2026-05-05T11:09:59,939 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:09:59,940 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:09:59,941 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:01,778 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::EField}; _Tp = bbp::sonata::SimulationConfig::EField; _Alloc = std::allocator]’, 2026-05-05T11:10:01,779 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = bbp::sonata::SimulationConfig::EField; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:10:01,780 inlined from ‘void bbp::sonata::{anonymous}::parseInputsEFields(const nlohmann::json&, const std::string&, std::vector&, double)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/config.cpp:442:22: 2026-05-05T11:10:01,781 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:01,782 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:01,783 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:02,547 In file included from /usr/include/c++/12/map:60, 2026-05-05T11:10:02,548 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:61, 2026-05-05T11:10:02,549 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/node_sets.cpp:10: 2026-05-05T11:10:02,550 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-05T11:10:02,551 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:10:02,552 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-05-05T11:10:02,553 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:02,627 In file included from /usr/include/c++/12/map:61: 2026-05-05T11:10:02,628 /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-05T11:10:02,629 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:10:02,630 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:10:02,631 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:02,632 512 | std::tuple(__k), 2026-05-05T11:10:02,632 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:02,633 513 | std::tuple<>()); 2026-05-05T11:10:02,634 | ~~~~~~~~~~~~~~~ 2026-05-05T11:10:02,691 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-05T11:10:02,692 inlined from ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5599:76: 2026-05-05T11:10:02,693 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:10:02,694 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:10:02,695 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:02,696 512 | std::tuple(__k), 2026-05-05T11:10:02,697 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:02,698 513 | std::tuple<>()); 2026-05-05T11:10:02,699 | ~~~~~~~~~~~~~~~ 2026-05-05T11:10:03,239 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:10:03,240 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:03,240 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:10:03,241 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:10:03,242 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:03,243 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:03,244 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:10:03,245 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:03,433 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:10:03,435 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:10:03,435 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:79:14: 2026-05-05T11:10:03,437 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:03,438 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:10:03,438 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:10:03,440 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:10:03,441 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:03,441 1939 | __comp); 2026-05-05T11:10:03,442 | ~~~~~~~ 2026-05-05T11:10:03,443 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:10:03,444 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:10:03,445 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:10:03,446 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:79:14: 2026-05-05T11:10:03,447 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:03,448 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:10:03,449 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:03,450 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:03,451 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:10:03,452 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:03,452 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:03,453 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:89:18: 2026-05-05T11:10:03,454 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:03,455 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:03,456 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:03,457 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:03,458 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:99:26: 2026-05-05T11:10:03,460 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:03,460 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:03,461 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:07,594 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:10:07,594 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:10:07,595 523 | vector<_Tp, _Alloc>:: 2026-05-05T11:10:07,596 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:07,905 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:10:07,906 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20004:38, 2026-05-05T11:10:07,907 inlined from ‘BasicJsonType& nlohmann::json_pointer::get_and_create(BasicJsonType&) const [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:11949:53, 2026-05-05T11:10:07,908 inlined from ‘static BasicJsonType nlohmann::json_pointer::unflatten(const BasicJsonType&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:12468:55: 2026-05-05T11:10:07,909 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:07,909 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2026-05-05T11:10:07,910 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:07,913 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-05T11:10:07,914 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](const typename object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20085:46, 2026-05-05T11:10:07,915 inlined from ‘BasicJsonType& nlohmann::json_pointer::get_and_create(BasicJsonType&) const [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:11954:53, 2026-05-05T11:10:07,916 inlined from ‘static BasicJsonType nlohmann::json_pointer::unflatten(const BasicJsonType&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:12468:55: 2026-05-05T11:10:07,917 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:10:07,918 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:10:07,919 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:07,920 512 | std::tuple(__k), 2026-05-05T11:10:07,921 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:07,922 513 | std::tuple<>()); 2026-05-05T11:10:07,923 | ~~~~~~~~~~~~~~~ 2026-05-05T11:10:07,925 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-05T11:10:07,926 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](const typename object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20085:46, 2026-05-05T11:10:07,927 inlined from ‘BasicJsonType& nlohmann::json_pointer::get_and_create(BasicJsonType&) const [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:11962:49, 2026-05-05T11:10:07,928 inlined from ‘static BasicJsonType nlohmann::json_pointer::unflatten(const BasicJsonType&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:12468:55: 2026-05-05T11:10:07,928 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:10:07,929 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:10:07,930 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:07,931 512 | std::tuple(__k), 2026-05-05T11:10:07,932 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:07,933 513 | std::tuple<>()); 2026-05-05T11:10:07,935 | ~~~~~~~~~~~~~~~ 2026-05-05T11:10:07,935 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:10:07,936 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20004:38, 2026-05-05T11:10:07,937 inlined from ‘BasicJsonType& nlohmann::json_pointer::get_and_create(BasicJsonType&) const [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:11969:49, 2026-05-05T11:10:07,938 inlined from ‘static BasicJsonType nlohmann::json_pointer::unflatten(const BasicJsonType&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:12468:55: 2026-05-05T11:10:07,939 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:07,940 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2026-05-05T11:10:07,941 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:09,592 [ 64%] Building CXX object CMakeFiles/sonata_static.dir/src/report_reader.cpp.o 2026-05-05T11:10:10,823 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:10:10,824 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:10:10,825 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:37:18, 2026-05-05T11:10:10,826 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:122:65: 2026-05-05T11:10:10,827 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:10:10,828 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:10:10,829 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:10:10,830 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:10:10,831 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:10,832 1939 | __comp); 2026-05-05T11:10:10,833 | ~~~~~~~ 2026-05-05T11:10:10,833 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:10:10,834 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:10:10,835 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:10:10,836 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:37:18, 2026-05-05T11:10:10,837 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:122:65: 2026-05-05T11:10:10,838 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:10:10,839 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:10:10,840 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:10,841 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:10:10,842 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:10:10,843 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:11,085 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:10:11,086 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:10:11,087 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:37:18, 2026-05-05T11:10:11,088 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:122:65: 2026-05-05T11:10:11,089 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:11,091 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:10:11,092 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:10:11,093 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:10:11,094 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:11,094 1939 | __comp); 2026-05-05T11:10:11,095 | ~~~~~~~ 2026-05-05T11:10:11,097 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:10:11,098 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:10:11,098 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:10:11,099 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:37:18, 2026-05-05T11:10:11,100 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:122:65: 2026-05-05T11:10:11,101 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:11,103 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:10:11,104 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:11,105 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:11,106 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:10:11,107 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:12,927 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:12,928 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = float; UnaryPredicate = std::function]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:12,929 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = float]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:228:46: 2026-05-05T11:10:12,930 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:12,931 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:12,932 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:12,950 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2026-05-05T11:10:12,951 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:10:12,952 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:10:12,953 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:13,015 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:13,016 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = double; UnaryPredicate = std::function]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:13,017 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = double]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:228:46: 2026-05-05T11:10:13,018 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:13,019 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:13,020 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:13,081 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’, 2026-05-05T11:10:13,082 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2026-05-05T11:10:13,083 inlined from ‘std::insert_iterator<_Container>& std::insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:973:26, 2026-05-05T11:10:13,084 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = nlohmann::detail::iter_impl >; _OIter = insert_iterator > >; _UnaryOperation = nlohmann::detail::from_json_array_impl, std::vector > >(const nlohmann::basic_json<>&, std::vector >&, priority_tag<1>)::&)>]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12, 2026-05-05T11:10:13,085 inlined from ‘decltype (((arr.reserve(declval()), j.get()), void())) nlohmann::detail::from_json_array_impl(const BasicJsonType&, ConstructibleArrayType&, priority_tag<1>) [with BasicJsonType = nlohmann::basic_json<>; ConstructibleArrayType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:3601:19, 2026-05-05T11:10:13,086 inlined from ‘decltype (((nlohmann::detail::from_json_array_impl(j, arr, (nlohmann::detail::priority_tag<3>)(())), j.get()), void())) nlohmann::detail::from_json(const BasicJsonType&, ConstructibleArrayType&) [with BasicJsonType = nlohmann::basic_json<>; ConstructibleArrayType = std::vector >; typename std::enable_if<((((is_constructible_array_type::value && (! is_constructible_object_type::value)) && (! is_constructible_string_type::value)) && (! std::is_same::value)) && (! is_basic_json::value)), int>::type = 0]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:3648:25: 2026-05-05T11:10:13,088 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:10:13,089 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2026-05-05T11:10:13,090 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:13,107 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:13,108 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = signed char; UnaryPredicate = std::function]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:13,109 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = signed char]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:228:46: 2026-05-05T11:10:13,110 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:13,111 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:13,112 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:13,193 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:13,194 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned char; UnaryPredicate = std::function]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:13,195 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = unsigned char]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:228:46: 2026-05-05T11:10:13,196 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:13,197 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:13,198 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:13,279 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:13,280 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = short int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:13,281 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = short int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:228:46: 2026-05-05T11:10:13,282 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:13,283 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:13,284 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:13,368 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:13,370 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = short unsigned int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:13,371 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = short unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:228:46: 2026-05-05T11:10:13,372 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:13,372 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:13,373 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:13,458 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:13,459 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:13,460 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:228:46: 2026-05-05T11:10:13,461 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:13,462 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:13,463 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:13,551 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:13,552 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:13,553 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:228:46: 2026-05-05T11:10:13,554 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:13,556 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:13,557 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:13,641 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:13,642 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = long long int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:13,644 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = long long int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:228:46: 2026-05-05T11:10:13,645 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:13,646 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:13,647 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:13,728 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:13,730 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = long long unsigned int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:13,730 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/population.cpp:228:46: 2026-05-05T11:10:13,731 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:13,732 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:13,733 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:16,142 [ 70%] Building CXX object CMakeFiles/sonata_static.dir/src/selection.cpp.o 2026-05-05T11:10:17,026 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp: In instantiation of ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’: 2026-05-05T11:10:17,027 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:598:16: required from here 2026-05-05T11:10:17,028 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:570:42: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,029 570 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-05-05T11:10:17,030 | ^~~ 2026-05-05T11:10:17,031 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:570:42: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,032 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:570:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,033 570 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-05-05T11:10:17,034 | ~~~~^~~~~ 2026-05-05T11:10:17,036 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:570:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,099 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp: In instantiation of ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’: 2026-05-05T11:10:17,100 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:598:16: required from here 2026-05-05T11:10:17,101 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:438:38: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,102 438 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-05-05T11:10:17,103 | ^~~ 2026-05-05T11:10:17,104 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:438:38: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,105 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:438:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,105 438 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-05-05T11:10:17,106 | ~~~~^~~~~ 2026-05-05T11:10:17,108 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:438:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,109 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:461:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,110 461 | dataset_elem_ids.select({std::get<0>(result.node_ranges[index])}, {1}).read(element_ids); 2026-05-05T11:10:17,111 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:17,113 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:461:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,164 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp: In instantiation of ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’: 2026-05-05T11:10:17,165 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:599:16: required from here 2026-05-05T11:10:17,166 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:570:42: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,167 570 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-05-05T11:10:17,168 | ^~~ 2026-05-05T11:10:17,169 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:570:42: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,170 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:570:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,171 570 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-05-05T11:10:17,172 | ~~~~^~~~~ 2026-05-05T11:10:17,173 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:570:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,224 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp: In instantiation of ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’: 2026-05-05T11:10:17,224 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:599:16: required from here 2026-05-05T11:10:17,225 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:438:38: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,227 438 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-05-05T11:10:17,228 | ^~~ 2026-05-05T11:10:17,229 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:438:38: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,230 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:438:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,231 438 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-05-05T11:10:17,232 | ~~~~^~~~~ 2026-05-05T11:10:17,233 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:438:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,234 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:461:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader >::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:17,235 461 | dataset_elem_ids.select({std::get<0>(result.node_ranges[index])}, {1}).read(element_ids); 2026-05-05T11:10:17,236 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:17,237 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:461:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader >::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-05T11:10:21,627 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-05T11:10:21,629 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned int; UnaryPredicate = {anonymous}::_filterStringAttribute >(const bbp::sonata::NodePopulation&, std::string, bbp::sonata::NodePopulation::regexMatch(const std::string&, const std::string&) const::)::]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:34:26, 2026-05-05T11:10:21,630 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_filterStringAttribute(const bbp::sonata::NodePopulation&, std::string, UnaryPredicate) [with UnaryPredicate = bbp::sonata::NodePopulation::regexMatch(const std::string&, const std::string&) const::]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:84:10, 2026-05-05T11:10:21,631 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::regexMatch(const std::string&, const std::string&) const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/nodes.cpp:110:57: 2026-05-05T11:10:21,632 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:21,633 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:21,634 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:22,832 [ 76%] Building CXX object CMakeFiles/sonata_static.dir/src/utils.cpp.o 2026-05-05T11:10:26,321 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:10:26,322 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:10:26,323 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5397:41, 2026-05-05T11:10:26,325 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10302:29: 2026-05-05T11:10:26,326 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:26,328 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:26,329 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:26,331 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:10:26,332 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:10:26,333 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5423:41, 2026-05-05T11:10:26,334 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10349:29: 2026-05-05T11:10:26,335 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:26,336 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:26,338 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:26,343 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:10:26,344 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long int&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:10:26,345 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_integer(number_integer_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5367:21, 2026-05-05T11:10:26,347 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10419:29: 2026-05-05T11:10:26,348 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:26,349 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:26,350 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:26,352 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:10:26,353 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:10:26,354 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::string(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5385:21, 2026-05-05T11:10:26,355 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10428:29: 2026-05-05T11:10:26,356 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:26,357 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:26,359 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:26,360 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:10:26,361 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long unsigned int&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:10:26,363 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_unsigned(number_unsigned_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5373:21, 2026-05-05T11:10:26,364 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10437:29: 2026-05-05T11:10:26,365 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:26,366 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:26,367 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:28,525 In file included from /usr/include/c++/12/algorithm:61, 2026-05-05T11:10:28,526 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/fmt/include/fmt/format-inl.h:12, 2026-05-05T11:10:28,527 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/fmt/include/fmt/format.h:4417, 2026-05-05T11:10:28,528 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/selection.cpp:3: 2026-05-05T11:10:28,529 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-05-05T11:10:28,530 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:28,530 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-05-05T11:10:28,531 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:28,606 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:10:28,608 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:28,608 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-05T11:10:28,610 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:10:28,611 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:28,691 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-05-05T11:10:28,692 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:10:28,693 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:28,694 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:10:28,695 | ^~~~~~~~~~~~~ 2026-05-05T11:10:30,110 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:10:30,111 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:7, 2026-05-05T11:10:30,112 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/selection.cpp:1: 2026-05-05T11:10:30,113 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:10:30,114 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:10:30,115 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:10:30,117 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:30,170 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:10:30,171 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:10:30,774 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-05T11:10:30,775 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:10:30,776 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5397:41, 2026-05-05T11:10:30,777 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10302:29: 2026-05-05T11:10:30,777 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:30,778 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:30,779 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:30,783 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-05T11:10:30,784 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:10:30,785 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5423:41, 2026-05-05T11:10:30,786 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10349:29: 2026-05-05T11:10:30,787 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:30,789 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:30,790 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:30,794 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-05T11:10:30,795 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long int&; BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:10:30,796 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_integer(number_integer_t) [with BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5367:21, 2026-05-05T11:10:30,797 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10419:29: 2026-05-05T11:10:30,798 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:30,799 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:30,800 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:30,801 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-05T11:10:30,802 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:10:30,804 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::string(string_t&) [with BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5385:21, 2026-05-05T11:10:30,805 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10428:29: 2026-05-05T11:10:30,806 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:30,807 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:30,808 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:30,809 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-05T11:10:30,810 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long unsigned int&; BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:10:30,811 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_unsigned(number_unsigned_t) [with BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5373:21, 2026-05-05T11:10:30,812 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10437:29: 2026-05-05T11:10:30,813 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:30,814 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:30,816 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:34,222 [ 82%] Building CXX object CMakeFiles/sonata_static.dir/src/version.cpp.o 2026-05-05T11:10:37,896 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-05T11:10:37,896 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:37,897 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:10:37,898 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:10:37,899 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:37,901 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:37,902 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:10:37,903 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:38,101 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:10:38,102 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:10:38,102 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:79:14: 2026-05-05T11:10:38,103 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:38,104 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:10:38,104 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:10:38,105 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:10:38,106 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:38,107 1939 | __comp); 2026-05-05T11:10:38,107 | ~~~~~~~ 2026-05-05T11:10:38,108 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-05T11:10:38,109 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:10:38,110 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-05T11:10:38,111 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:79:14: 2026-05-05T11:10:38,112 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:38,113 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:10:38,113 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:38,114 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:38,115 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:10:38,116 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:38,116 In file included from /usr/include/c++/12/vector:64: 2026-05-05T11:10:38,117 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:38,118 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:89:18: 2026-05-05T11:10:38,119 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:38,120 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:38,121 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:38,121 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:38,122 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_bulk.hpp:99:26: 2026-05-05T11:10:38,123 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:38,124 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:38,125 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:38,151 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:10:38,152 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/H5PropertyList.hpp:11, 2026-05-05T11:10:38,153 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/H5File.hpp:15, 2026-05-05T11:10:38,153 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/read_canonical_selection.hpp:3, 2026-05-05T11:10:38,154 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/hdf5_reader.hpp:3, 2026-05-05T11:10:38,155 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:1: 2026-05-05T11:10:38,156 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2026-05-05T11:10:38,157 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:10:38,157 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:10:38,158 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:38,233 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’, 2026-05-05T11:10:38,234 inlined from ‘bbp::sonata::SpikeTimes bbp::sonata::SpikeReader::Population::getArrays(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:190:52: 2026-05-05T11:10:38,235 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:10:38,236 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:38,237 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:38,238 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:38,239 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-05-05T11:10:38,240 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = const std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2026-05-05T11:10:38,240 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-05-05T11:10:38,241 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-05-05T11:10:38,242 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-05-05T11:10:38,243 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2026-05-05T11:10:38,243 inlined from ‘bool bbp::sonata::Selection::contains(Value) const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/selection.cpp:123:14: 2026-05-05T11:10:38,244 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:38,245 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:38,246 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:39,198 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:10:39,199 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:10:39,199 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:10:39,200 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:39,287 In file included from /usr/include/c++/12/unordered_set:46, 2026-05-05T11:10:39,288 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:7: 2026-05-05T11:10:39,289 /usr/include/c++/12/bits/hashtable.h: In constructor ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::_Hashtable(_InputIterator, _InputIterator, size_type, const _Hash&, const _Equal&, const allocator_type&, std::true_type) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Key = long long unsigned int; _Value = long long unsigned int; _Alloc = std::allocator; _ExtractKey = std::__detail::_Identity; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’: 2026-05-05T11:10:39,290 /usr/include/c++/12/bits/hashtable.h:1182:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:39,291 1182 | _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, 2026-05-05T11:10:39,292 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:39,292 1183 | _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>:: 2026-05-05T11:10:39,293 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:39,294 /usr/include/c++/12/bits/hashtable.h:1182:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:41,671 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {unsigned int&, double&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2026-05-05T11:10:41,672 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:10:41,673 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:10:41,674 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:43,322 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:10:43,323 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-05T11:10:43,351 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-05T11:10:43,352 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:43,353 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:43,354 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:43,433 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’: 2026-05-05T11:10:43,433 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:43,434 65 | Selection Selection::fromValues(Iterator first, Iterator last) { 2026-05-05T11:10:43,435 | ^~~~~~~~~ 2026-05-05T11:10:43,436 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:43,437 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:43,438 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:75:33: 2026-05-05T11:10:43,438 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:43,439 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:43,440 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:43,440 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:43,441 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/include/bbp/sonata/selection.h:84:25: 2026-05-05T11:10:43,442 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:43,442 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:43,443 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:43,475 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/selection.cpp: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(const Values&)’: 2026-05-05T11:10:43,475 /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/selection.cpp:71:51: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:43,476 71 | return fromValues(values.begin(), values.end()); 2026-05-05T11:10:43,477 | ^ 2026-05-05T11:10:43,506 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:43,507 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-05-05T11:10:43,508 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = const std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2026-05-05T11:10:43,509 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-05-05T11:10:43,510 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-05-05T11:10:43,511 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-05-05T11:10:43,512 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2026-05-05T11:10:43,512 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::union_(const Ranges&, const Ranges&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/selection.cpp:57:14: 2026-05-05T11:10:43,513 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:43,514 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:43,515 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:43,515 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:43,516 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-05-05T11:10:43,517 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = const std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2026-05-05T11:10:43,518 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-05-05T11:10:43,519 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-05-05T11:10:43,520 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-05-05T11:10:43,520 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2026-05-05T11:10:43,521 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::union_(const Ranges&, const Ranges&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/selection.cpp:58:14: 2026-05-05T11:10:43,522 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:43,523 1287 | _M_realloc_insert(end(), __x); 2026-05-05T11:10:43,524 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-05T11:10:43,584 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:43,585 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:10:43,586 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::intersection_(const Ranges&, const Ranges&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/selection.cpp:42:26: 2026-05-05T11:10:43,586 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:43,587 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:43,588 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:44,182 In constructor ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::_Hashtable(_InputIterator, _InputIterator, size_type, const _Hash&, const key_equal&, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Key = long long unsigned int; _Value = long long unsigned int; _Alloc = std::allocator; _ExtractKey = std::__detail::_Identity; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’, 2026-05-05T11:10:44,182 inlined from ‘std::unordered_set<_Value, _Hash, _Pred, _Alloc>::unordered_set(_InputIterator, _InputIterator, size_type, const hasher&, const key_equal&, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Value = long long unsigned int; _Hash = std::hash; _Pred = std::equal_to; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/unordered_set.h:171:4, 2026-05-05T11:10:44,183 inlined from ‘void {anonymous}::filterNodeIDUnsorted(bbp::sonata::Spikes&, const bbp::sonata::Selection&)’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:32:99, 2026-05-05T11:10:44,184 inlined from ‘void bbp::sonata::SpikeReader::Population::filterNode(bbp::sonata::Spikes&, const bbp::sonata::Selection&) const’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:239:29: 2026-05-05T11:10:44,185 /usr/include/c++/12/bits/hashtable.h:569:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:44,186 569 | __unique_keys{}) 2026-05-05T11:10:44,186 | ^ 2026-05-05T11:10:44,574 In file included from /usr/include/c++/12/algorithm:61, 2026-05-05T11:10:44,575 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:12, 2026-05-05T11:10:44,576 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../H5DataType.hpp:17, 2026-05-05T11:10:44,577 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:15, 2026-05-05T11:10:44,577 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:13, 2026-05-05T11:10:44,578 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/HighFive/include/highfive/H5File.hpp:16: 2026-05-05T11:10:44,578 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-05T11:10:44,579 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:44,580 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-05T11:10:44,580 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:10:44,581 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:44,613 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-05T11:10:44,614 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:44,615 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:44,652 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-05T11:10:44,653 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:44,654 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:44,690 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-05T11:10:44,691 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:44,693 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:51,188 In file included from /usr/include/c++/12/vector:70, 2026-05-05T11:10:51,189 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:16, 2026-05-05T11:10:51,190 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.cpp:10: 2026-05-05T11:10:51,190 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:10:51,191 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:10:51,192 175 | vector<_Tp, _Alloc>:: 2026-05-05T11:10:51,192 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:51,234 In file included from /usr/include/c++/12/vector:64: 2026-05-05T11:10:51,234 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:10:51,235 inlined from ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:20568:66: 2026-05-05T11:10:51,236 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:10:51,237 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2026-05-05T11:10:51,238 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:51,392 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:10:51,393 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:10:51,394 439 | vector<_Tp, _Alloc>:: 2026-05-05T11:10:51,395 | ^~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:51,481 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:10:51,482 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:10:51,523 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:10:51,523 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:10:51,569 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-05T11:10:51,570 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-05T11:10:54,078 In file included from /usr/include/c++/12/set:60, 2026-05-05T11:10:54,079 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:14: 2026-05-05T11:10:54,079 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-05T11:10:54,080 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:10:54,081 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-05-05T11:10:54,082 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:54,172 In file included from /usr/include/c++/12/map:61, 2026-05-05T11:10:54,173 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:61, 2026-05-05T11:10:54,174 from /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/utils.h:19: 2026-05-05T11:10:54,174 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-05T11:10:54,175 inlined from ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5599:76: 2026-05-05T11:10:54,176 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:10:54,176 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:10:54,177 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:54,178 512 | std::tuple(__k), 2026-05-05T11:10:54,178 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:54,179 513 | std::tuple<>()); 2026-05-05T11:10:54,180 | ~~~~~~~~~~~~~~~ 2026-05-05T11:10:55,226 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-05-05T11:10:55,227 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-05T11:10:55,228 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:55,229 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:10:55,230 | ^~~~~~~~~~~~~ 2026-05-05T11:10:55,303 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-05T11:10:55,304 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:55,305 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:10:55,305 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:10:55,306 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:55,307 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:55,308 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:10:55,309 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:55,601 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:55,602 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:10:55,602 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:287:31: 2026-05-05T11:10:55,603 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:55,604 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:55,605 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:55,605 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-05-05T11:10:55,606 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-05T11:10:55,607 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:305:22: 2026-05-05T11:10:55,608 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:55,608 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:10:55,609 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:10:55,610 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:10:55,611 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:55,611 1939 | __comp); 2026-05-05T11:10:55,612 | ~~~~~~~ 2026-05-05T11:10:55,613 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-05-05T11:10:55,614 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:10:55,615 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-05T11:10:55,616 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:305:22: 2026-05-05T11:10:55,616 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:55,617 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:10:55,618 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:55,619 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:55,619 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:10:55,620 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:55,621 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {unsigned int&, double&}; _Tp = std::pair; _Alloc = std::allocator >]’, 2026-05-05T11:10:55,621 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:320:38: 2026-05-05T11:10:55,622 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:55,623 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:55,624 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:56,211 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-05T11:10:56,212 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:56,213 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:10:56,214 | ^~~~~~~~~~~~~ 2026-05-05T11:10:56,286 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-05T11:10:56,287 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:56,288 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:10:56,289 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:10:56,290 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:56,290 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:56,291 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:10:56,292 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:56,555 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:56,556 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:390:48: 2026-05-05T11:10:56,556 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:56,557 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:56,558 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:56,559 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’, 2026-05-05T11:10:56,560 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-05T11:10:56,561 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:404:18: 2026-05-05T11:10:56,561 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:56,562 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:10:56,563 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:10:56,564 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:10:56,565 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:56,565 1939 | __comp); 2026-05-05T11:10:56,566 | ~~~~~~~ 2026-05-05T11:10:56,567 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’, 2026-05-05T11:10:56,567 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:10:56,568 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-05T11:10:56,568 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:404:18: 2026-05-05T11:10:56,569 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:56,570 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:10:56,571 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:56,572 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:56,573 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:10:56,573 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:56,574 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:56,575 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:10:56,576 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:420:48: 2026-05-05T11:10:56,577 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:56,578 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:56,579 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:57,302 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’, 2026-05-05T11:10:57,303 inlined from ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:541:38: 2026-05-05T11:10:57,304 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:10:57,304 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:57,305 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:57,948 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-05T11:10:57,949 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:57,950 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:10:57,950 | ^~~~~~~~~~~~~ 2026-05-05T11:10:58,023 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-05T11:10:58,024 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:58,025 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:10:58,026 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:10:58,026 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:58,027 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:58,028 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:10:58,029 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:58,327 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:58,327 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:10:58,328 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:287:31: 2026-05-05T11:10:58,330 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:58,330 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:58,331 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:58,332 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-05-05T11:10:58,332 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-05T11:10:58,333 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:305:22: 2026-05-05T11:10:58,334 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:58,335 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:10:58,336 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:10:58,337 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:10:58,337 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:58,338 1939 | __comp); 2026-05-05T11:10:58,339 | ~~~~~~~ 2026-05-05T11:10:58,340 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-05-05T11:10:58,341 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:10:58,342 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-05T11:10:58,343 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:305:22: 2026-05-05T11:10:58,344 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:58,344 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:10:58,345 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:58,346 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:58,346 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:10:58,347 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:58,348 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {unsigned int&, double&}; _Tp = std::pair; _Alloc = std::allocator >]’, 2026-05-05T11:10:58,349 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:320:38: 2026-05-05T11:10:58,350 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:58,350 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:58,351 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:58,941 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-05T11:10:58,941 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:58,942 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-05T11:10:58,943 | ^~~~~~~~~~~~~ 2026-05-05T11:10:59,016 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-05T11:10:59,017 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:59,018 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-05T11:10:59,019 | ^~~~~~~~~~~~~~~~ 2026-05-05T11:10:59,019 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:59,020 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:59,021 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-05T11:10:59,021 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:59,286 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:59,287 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:390:48: 2026-05-05T11:10:59,288 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:59,288 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:59,289 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:59,290 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’, 2026-05-05T11:10:59,291 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-05T11:10:59,292 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:404:18: 2026-05-05T11:10:59,292 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:59,293 1937 | std::__introsort_loop(__first, __last, 2026-05-05T11:10:59,294 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-05T11:10:59,295 1938 | std::__lg(__last - __first) * 2, 2026-05-05T11:10:59,296 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:59,296 1939 | __comp); 2026-05-05T11:10:59,297 | ~~~~~~~ 2026-05-05T11:10:59,298 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’, 2026-05-05T11:10:59,299 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-05T11:10:59,299 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-05T11:10:59,300 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:404:18: 2026-05-05T11:10:59,301 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:59,302 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-05T11:10:59,302 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:59,303 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-05T11:10:59,304 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-05T11:10:59,305 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:10:59,306 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-05T11:10:59,306 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-05T11:10:59,308 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:420:48: 2026-05-05T11:10:59,308 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-05T11:10:59,309 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:10:59,310 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,039 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’, 2026-05-05T11:11:00,050 inlined from ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/src/report_reader.cpp:541:38: 2026-05-05T11:11:00,050 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-05T11:11:00,051 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:11:00,052 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,933 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:11:00,933 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:11:00,934 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5397:41, 2026-05-05T11:11:00,935 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10302:29: 2026-05-05T11:11:00,936 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:11:00,937 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:11:00,938 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,939 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-05T11:11:00,939 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5411:72, 2026-05-05T11:11:00,940 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10325:29: 2026-05-05T11:11:00,941 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:11:00,941 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:11:00,942 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,943 512 | std::tuple(__k), 2026-05-05T11:11:00,944 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,944 513 | std::tuple<>()); 2026-05-05T11:11:00,945 | ~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,946 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:11:00,947 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:11:00,948 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5423:41, 2026-05-05T11:11:00,948 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10349:29: 2026-05-05T11:11:00,949 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:11:00,950 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:11:00,951 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,952 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:11:00,952 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long int&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:11:00,953 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_integer(number_integer_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5367:21, 2026-05-05T11:11:00,954 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10419:29: 2026-05-05T11:11:00,955 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:11:00,956 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:11:00,957 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,958 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:11:00,958 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:11:00,959 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::string(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5385:21, 2026-05-05T11:11:00,960 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10428:29: 2026-05-05T11:11:00,961 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:11:00,962 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:11:00,963 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,965 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-05T11:11:00,966 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long unsigned int&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-05T11:11:00,969 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_unsigned(number_unsigned_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5373:21, 2026-05-05T11:11:00,971 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10437:29: 2026-05-05T11:11:00,973 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-05T11:11:00,974 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-05T11:11:00,975 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,976 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-05T11:11:00,978 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:5411:72, 2026-05-05T11:11:00,979 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/extlib/nlohmann/nlohmann/json.hpp:10521:25: 2026-05-05T11:11:00,980 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-05T11:11:00,982 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-05T11:11:00,983 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,984 512 | std::tuple(__k), 2026-05-05T11:11:00,985 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-05T11:11:00,987 513 | std::tuple<>()); 2026-05-05T11:11:00,988 | ~~~~~~~~~~~~~~~ 2026-05-05T11:11:02,942 [ 88%] Linking CXX static library libsonata.a 2026-05-05T11:11:03,754 [ 88%] Built target sonata_static 2026-05-05T11:11:03,806 [ 94%] Building CXX object python/CMakeFiles/_libsonata.dir/bindings.cpp.o 2026-05-05T11:12:19,760 [100%] Linking CXX shared module /tmp/pip-wheel-90h8s59w/libsonata_3de780b772f84d0eb6bb434bff491f9b/build/lib.linux-armv7l-cpython-311/libsonata/_libsonata.cpython-311-arm-linux-gnueabihf.so 2026-05-05T11:12:52,864 [100%] Built target _libsonata 2026-05-05T11:12:52,911 installing to build/bdist.linux-armv7l/wheel 2026-05-05T11:12:52,912 running install 2026-05-05T11:12:52,936 running install_lib 2026-05-05T11:12:52,948 creating build/bdist.linux-armv7l/wheel 2026-05-05T11:12:52,951 creating build/bdist.linux-armv7l/wheel/libsonata 2026-05-05T11:12:52,952 copying build/lib.linux-armv7l-cpython-311/libsonata/_libsonata.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./libsonata 2026-05-05T11:12:52,985 copying build/lib.linux-armv7l-cpython-311/libsonata/__init__.py -> build/bdist.linux-armv7l/wheel/./libsonata 2026-05-05T11:12:52,987 running install_egg_info 2026-05-05T11:12:53,012 running egg_info 2026-05-05T11:12:53,020 writing python/libsonata.egg-info/PKG-INFO 2026-05-05T11:12:53,024 writing dependency_links to python/libsonata.egg-info/dependency_links.txt 2026-05-05T11:12:53,026 writing requirements to python/libsonata.egg-info/requires.txt 2026-05-05T11:12:53,027 writing top-level names to python/libsonata.egg-info/top_level.txt 2026-05-05T11:12:53,056 /tmp/pip-build-env-dxwkvle0/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-05T11:12:53,056 return get_active_overrides().subprocess_timeout 2026-05-05T11:12:53,063 listing git files failed - pretending there aren't any 2026-05-05T11:12:53,068 reading manifest file 'python/libsonata.egg-info/SOURCES.txt' 2026-05-05T11:12:53,121 reading manifest template 'MANIFEST.in' 2026-05-05T11:12:53,193 adding license file 'COPYING' 2026-05-05T11:12:53,194 adding license file 'COPYING.LESSER' 2026-05-05T11:12:53,195 adding license file 'AUTHORS.txt' 2026-05-05T11:12:53,207 writing manifest file 'python/libsonata.egg-info/SOURCES.txt' 2026-05-05T11:12:53,208 Copying python/libsonata.egg-info to build/bdist.linux-armv7l/wheel/./libsonata-0.1.35-py3.11.egg-info 2026-05-05T11:12:53,222 running install_scripts 2026-05-05T11:12:53,272 creating build/bdist.linux-armv7l/wheel/libsonata-0.1.35.dist-info/WHEEL 2026-05-05T11:12:53,275 creating '/tmp/pip-wheel-49nnxb9l/.tmp-gwi7m6j3/libsonata-0.1.35-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-05T11:12:53,277 adding 'libsonata/__init__.py' 2026-05-05T11:12:53,660 adding 'libsonata/_libsonata.cpython-311-arm-linux-gnueabihf.so' 2026-05-05T11:12:53,675 adding 'libsonata-0.1.35.dist-info/licenses/AUTHORS.txt' 2026-05-05T11:12:53,681 adding 'libsonata-0.1.35.dist-info/licenses/COPYING' 2026-05-05T11:12:53,683 adding 'libsonata-0.1.35.dist-info/licenses/COPYING.LESSER' 2026-05-05T11:12:53,686 adding 'libsonata-0.1.35.dist-info/METADATA' 2026-05-05T11:12:53,687 adding 'libsonata-0.1.35.dist-info/WHEEL' 2026-05-05T11:12:53,688 adding 'libsonata-0.1.35.dist-info/top_level.txt' 2026-05-05T11:12:53,689 adding 'libsonata-0.1.35.dist-info/RECORD' 2026-05-05T11:12:53,699 removing build/bdist.linux-armv7l/wheel 2026-05-05T11:12:53,809 Building wheel for libsonata (pyproject.toml): finished with status 'done' 2026-05-05T11:12:53,836 Created wheel for libsonata: filename=libsonata-0.1.35-cp311-cp311-linux_armv7l.whl size=796010 sha256=6968be0db53eb1ff5edd99f02a2f6193c138e0f4d28f96a2fd41e7bcb55d3ccf 2026-05-05T11:12:53,837 Stored in directory: /tmp/pip-ephem-wheel-cache-z1p1hwbz/wheels/31/ea/3a/1f0238d26c0fc887f35d6ff578efcf96a324106706ef0495f9 2026-05-05T11:12:53,852 Successfully built libsonata 2026-05-05T11:12:53,875 Removed build tracker: '/tmp/pip-build-tracker-13lde2fn'