2026-05-07T11:03:22,089 Created temporary directory: /tmp/pip-ephem-wheel-cache-igyd7xp_
2026-05-07T11:03:22,091 Created temporary directory: /tmp/pip-build-tracker-ynzhiu_c
2026-05-07T11:03:22,092 Initialized build tracking at /tmp/pip-build-tracker-ynzhiu_c
2026-05-07T11:03:22,092 Created build tracker: /tmp/pip-build-tracker-ynzhiu_c
2026-05-07T11:03:22,093 Entered build tracker: /tmp/pip-build-tracker-ynzhiu_c
2026-05-07T11:03:22,093 Created temporary directory: /tmp/pip-wheel-97ef0sp0
2026-05-07T11:03:22,097 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-07T11:03:22,099 Created temporary directory: /tmp/pip-ephem-wheel-cache-65ay_wv4
2026-05-07T11:03:22,120 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-07T11:03:22,124 2 location(s) to search for versions of acellera-htmd:
2026-05-07T11:03:22,124 * https://pypi.org/simple/acellera-htmd/
2026-05-07T11:03:22,124 * https://www.piwheels.org/simple/acellera-htmd/
2026-05-07T11:03:22,125 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/
2026-05-07T11:03:22,125 Getting page https://pypi.org/simple/acellera-htmd/
2026-05-07T11:03:22,127 Found index url https://pypi.org/simple
2026-05-07T11:03:22,353 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json
2026-05-07T11:03:22,356   Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2
2026-05-07T11:03:22,357   Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4
2026-05-07T11:03:22,358   Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5
2026-05-07T11:03:22,359   Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6
2026-05-07T11:03:22,360   Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8
2026-05-07T11:03:22,361   Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9
2026-05-07T11:03:22,362   Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0
2026-05-07T11:03:22,363   Found link https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.1
2026-05-07T11:03:22,364   Found link https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.2
2026-05-07T11:03:22,365   Found link https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.3
2026-05-07T11:03:22,366   Found link https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.4
2026-05-07T11:03:22,367   Found link https://files.pythonhosted.org/packages/0f/6b/33aaeb43df7e5b74f5070ddd7ebdd18076821ccdadc3f529c50436d9d008/acellera_htmd-2.6.5.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.5
2026-05-07T11:03:22,368   Found link https://files.pythonhosted.org/packages/b3/a6/c2e5b33d5c296f1277038a88421d1a5f265aa0bc614fb5dcd7c041936ec2/acellera_htmd-2.7.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.0
2026-05-07T11:03:22,369   Found link https://files.pythonhosted.org/packages/dc/e5/90f20a69067a35bceeb16ad0d05bd7d11890e619053858f07a284c7a7be0/acellera_htmd-2.7.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.1
2026-05-07T11:03:22,370 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/
2026-05-07T11:03:22,370 Getting page https://www.piwheels.org/simple/acellera-htmd/
2026-05-07T11:03:22,371 Found index url https://www.piwheels.org/simple
2026-05-07T11:03:22,538 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html
2026-05-07T11:03:22,542   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.7.0-py3-none-any.whl#sha256=404da5fc40b9411322f14455aebe19e3e684401fd2608a4fcf08b1f88762f2db (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-07T11:03:22,543   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.5-py3-none-any.whl#sha256=6a4478ef428c11d897f8bed0691db4c073ee7b0cc080975f0ce3794bb17152be (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-07T11:03:22,543   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.4-py3-none-any.whl#sha256=66c7d8d0f505d9c4515b9d989a0710120d27ef39bb24537b9729224bf711dcb6 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-07T11:03:22,544   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.3-py3-none-any.whl#sha256=32d22acbcd9e7adb5730ba97d1fe4de785a0814f14fd802980d53208fc6e291b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-07T11:03:22,544   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.2-py3-none-any.whl#sha256=eb4bab0a119829d1bc40fbb9918fd5ca3ed48922a4ebe7228717cf8de4aa1427 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-07T11:03:22,545   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.1-py3-none-any.whl#sha256=276acfba7f712b652f35f6ce7279fe2885edf66bce30142e45deb90188a58cfb (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-07T11:03:22,546   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.0-py3-none-any.whl#sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-07T11:03:22,546   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-07T11:03:22,547   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-07T11:03:22,548   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/)
2026-05-07T11:03:22,549 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/
2026-05-07T11:03:22,549 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/
2026-05-07T11:03:22,570 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates
2026-05-07T11:03:22,590 Collecting acellera-htmd==2.7.1
2026-05-07T11:03:22,592   Created temporary directory: /tmp/pip-unpack-6uvua2c5
2026-05-07T11:03:22,819   Downloading acellera_htmd-2.7.1.tar.gz (4.1 MB)
2026-05-07T11:03:24,942   Added acellera-htmd==2.7.1 from https://files.pythonhosted.org/packages/dc/e5/90f20a69067a35bceeb16ad0d05bd7d11890e619053858f07a284c7a7be0/acellera_htmd-2.7.1.tar.gz to build tracker '/tmp/pip-build-tracker-ynzhiu_c'
2026-05-07T11:03:24,948   Created temporary directory: /tmp/pip-build-env-be6cdngr
2026-05-07T11:03:24,952   Installing build dependencies: started
2026-05-07T11:03:24,953   Running command pip subprocess to install build dependencies
2026-05-07T11:03:26,084   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-05-07T11:03:26,534   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-07T11:03:26,557   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-07T11:03:28,338   Collecting setuptools
2026-05-07T11:03:28,432     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-05-07T11:03:28,813   Collecting setuptools-scm>=8
2026-05-07T11:03:28,829     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-05-07T11:03:28,915   Collecting vcs-versioning>=1.0.0.dev0
2026-05-07T11:03:28,938     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-05-07T11:03:29,122   Collecting packaging>=20
2026-05-07T11:03:29,140     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-05-07T11:03:32,146   Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm
2026-05-07T11:03:35,838     Creating /tmp/pip-build-env-be6cdngr/overlay/local/bin
2026-05-07T11:03:35,841     changing mode of /tmp/pip-build-env-be6cdngr/overlay/local/bin/vcs-versioning to 755
2026-05-07T11:03:35,949     changing mode of /tmp/pip-build-env-be6cdngr/overlay/local/bin/setuptools-scm to 755
2026-05-07T11:03:35,977   Successfully installed packaging-26.2 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1
2026-05-07T11:03:36,261   Installing build dependencies: finished with status 'done'
2026-05-07T11:03:36,267   Getting requirements to build wheel: started
2026-05-07T11:03:36,268   Running command Getting requirements to build wheel
2026-05-07T11:03:37,058   running egg_info
2026-05-07T11:03:37,066   writing acellera_htmd.egg-info/PKG-INFO
2026-05-07T11:03:37,070   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-05-07T11:03:37,072   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-05-07T11:03:37,076   writing requirements to acellera_htmd.egg-info/requires.txt
2026-05-07T11:03:37,077   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-05-07T11:03:37,188   /tmp/pip-build-env-be6cdngr/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-07T11:03:37,188     return get_active_overrides().subprocess_timeout
2026-05-07T11:03:37,195   listing git files failed - pretending there aren't any
2026-05-07T11:03:37,200   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-07T11:03:37,222   reading manifest template 'MANIFEST.in'
2026-05-07T11:03:37,250   no previously-included directories found matching 'htmd/data'
2026-05-07T11:03:37,251   no previously-included directories found matching '.github'
2026-05-07T11:03:37,252   no previously-included directories found matching 'doc'
2026-05-07T11:03:37,253   no previously-included directories found matching 'package'
2026-05-07T11:03:37,255   no previously-included directories found matching 'tests'
2026-05-07T11:03:37,256   no previously-included directories found matching 'tutorials'
2026-05-07T11:03:37,257   warning: no previously-included files found matching 'Makefile'
2026-05-07T11:03:37,258   adding license file 'LICENSE'
2026-05-07T11:03:37,281   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-07T11:03:37,386   Getting requirements to build wheel: finished with status 'done'
2026-05-07T11:03:37,390   Created temporary directory: /tmp/pip-modern-metadata-gsy5iipr
2026-05-07T11:03:37,392   Preparing metadata (pyproject.toml): started
2026-05-07T11:03:37,393   Running command Preparing metadata (pyproject.toml)
2026-05-07T11:03:38,132   running dist_info
2026-05-07T11:03:38,145   creating /tmp/pip-modern-metadata-gsy5iipr/acellera_htmd.egg-info
2026-05-07T11:03:38,146   writing /tmp/pip-modern-metadata-gsy5iipr/acellera_htmd.egg-info/PKG-INFO
2026-05-07T11:03:38,151   writing dependency_links to /tmp/pip-modern-metadata-gsy5iipr/acellera_htmd.egg-info/dependency_links.txt
2026-05-07T11:03:38,153   writing entry points to /tmp/pip-modern-metadata-gsy5iipr/acellera_htmd.egg-info/entry_points.txt
2026-05-07T11:03:38,157   writing requirements to /tmp/pip-modern-metadata-gsy5iipr/acellera_htmd.egg-info/requires.txt
2026-05-07T11:03:38,158   writing top-level names to /tmp/pip-modern-metadata-gsy5iipr/acellera_htmd.egg-info/top_level.txt
2026-05-07T11:03:38,159   writing manifest file '/tmp/pip-modern-metadata-gsy5iipr/acellera_htmd.egg-info/SOURCES.txt'
2026-05-07T11:03:38,249   /tmp/pip-build-env-be6cdngr/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-07T11:03:38,250     return get_active_overrides().subprocess_timeout
2026-05-07T11:03:38,256   listing git files failed - pretending there aren't any
2026-05-07T11:03:38,260   reading manifest file '/tmp/pip-modern-metadata-gsy5iipr/acellera_htmd.egg-info/SOURCES.txt'
2026-05-07T11:03:38,262   reading manifest template 'MANIFEST.in'
2026-05-07T11:03:38,289   no previously-included directories found matching 'htmd/data'
2026-05-07T11:03:38,290   no previously-included directories found matching '.github'
2026-05-07T11:03:38,291   no previously-included directories found matching 'doc'
2026-05-07T11:03:38,292   no previously-included directories found matching 'package'
2026-05-07T11:03:38,293   no previously-included directories found matching 'tests'
2026-05-07T11:03:38,294   no previously-included directories found matching 'tutorials'
2026-05-07T11:03:38,295   warning: no previously-included files found matching 'Makefile'
2026-05-07T11:03:38,295   adding license file 'LICENSE'
2026-05-07T11:03:38,314   writing manifest file '/tmp/pip-modern-metadata-gsy5iipr/acellera_htmd.egg-info/SOURCES.txt'
2026-05-07T11:03:38,316   creating '/tmp/pip-modern-metadata-gsy5iipr/acellera_htmd-2.7.1.dist-info'
2026-05-07T11:03:38,450   Preparing metadata (pyproject.toml): finished with status 'done'
2026-05-07T11:03:38,455   Source in /tmp/pip-wheel-97ef0sp0/acellera-htmd_16381827361a4e9c853b3def3ff58812 has version 2.7.1, which satisfies requirement acellera-htmd==2.7.1 from https://files.pythonhosted.org/packages/dc/e5/90f20a69067a35bceeb16ad0d05bd7d11890e619053858f07a284c7a7be0/acellera_htmd-2.7.1.tar.gz
2026-05-07T11:03:38,456   Removed acellera-htmd==2.7.1 from https://files.pythonhosted.org/packages/dc/e5/90f20a69067a35bceeb16ad0d05bd7d11890e619053858f07a284c7a7be0/acellera_htmd-2.7.1.tar.gz from build tracker '/tmp/pip-build-tracker-ynzhiu_c'
2026-05-07T11:03:38,461 Created temporary directory: /tmp/pip-unpack-8uf2cdlu
2026-05-07T11:03:38,462 Building wheels for collected packages: acellera-htmd
2026-05-07T11:03:38,466   Created temporary directory: /tmp/pip-wheel-8yty9f1p
2026-05-07T11:03:38,467   Destination directory: /tmp/pip-wheel-8yty9f1p
2026-05-07T11:03:38,469   Building wheel for acellera-htmd (pyproject.toml): started
2026-05-07T11:03:38,470   Running command Building wheel for acellera-htmd (pyproject.toml)
2026-05-07T11:03:39,178   running bdist_wheel
2026-05-07T11:03:39,202   running build
2026-05-07T11:03:39,203   running build_py
2026-05-07T11:03:39,205   creating build/lib/htmd
2026-05-07T11:03:39,207   copying htmd/license.py -> build/lib/htmd
2026-05-07T11:03:39,209   copying htmd/pathplanning.py -> build/lib/htmd
2026-05-07T11:03:39,211   copying htmd/dock.py -> build/lib/htmd
2026-05-07T11:03:39,214   copying htmd/kinetics.py -> build/lib/htmd
2026-05-07T11:03:39,216   copying htmd/session.py -> build/lib/htmd
2026-05-07T11:03:39,218   copying htmd/mutualinformation.py -> build/lib/htmd
2026-05-07T11:03:39,220   copying htmd/config.py -> build/lib/htmd
2026-05-07T11:03:39,222   copying htmd/versionwarnings.py -> build/lib/htmd
2026-05-07T11:03:39,224   copying htmd/latest.py -> build/lib/htmd
2026-05-07T11:03:39,226   copying htmd/__init__.py -> build/lib/htmd
2026-05-07T11:03:39,228   copying htmd/model.py -> build/lib/htmd
2026-05-07T11:03:39,231   copying htmd/ui.py -> build/lib/htmd
2026-05-07T11:03:39,233   copying htmd/metricdatagenerator.py -> build/lib/htmd
2026-05-07T11:03:39,235   copying htmd/simlist.py -> build/lib/htmd
2026-05-07T11:03:39,238   copying htmd/decorators.py -> build/lib/htmd
2026-05-07T11:03:39,240   copying htmd/metricdata.py -> build/lib/htmd
2026-05-07T11:03:39,243   copying htmd/units.py -> build/lib/htmd
2026-05-07T11:03:39,244   copying htmd/util.py -> build/lib/htmd
2026-05-07T11:03:39,246   copying htmd/parallelprogress.py -> build/lib/htmd
2026-05-07T11:03:39,248   copying htmd/home.py -> build/lib/htmd
2026-05-07T11:03:39,251   creating build/lib/htmd/adaptive
2026-05-07T11:03:39,252   copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive
2026-05-07T11:03:39,254   copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive
2026-05-07T11:03:39,257   copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive
2026-05-07T11:03:39,259   copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive
2026-05-07T11:03:39,262   copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive
2026-05-07T11:03:39,264   copying htmd/adaptive/util.py -> build/lib/htmd/adaptive
2026-05-07T11:03:39,266   copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive
2026-05-07T11:03:39,269   creating build/lib/htmd/projections
2026-05-07T11:03:39,270   copying htmd/projections/gwpca.py -> build/lib/htmd/projections
2026-05-07T11:03:39,272   copying htmd/projections/__init__.py -> build/lib/htmd/projections
2026-05-07T11:03:39,274   copying htmd/projections/metric.py -> build/lib/htmd/projections
2026-05-07T11:03:39,277   copying htmd/projections/tica.py -> build/lib/htmd/projections
2026-05-07T11:03:39,279   copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections
2026-05-07T11:03:39,282   creating build/lib/htmd/membranebuilder
2026-05-07T11:03:39,283   copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder
2026-05-07T11:03:39,286   copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder
2026-05-07T11:03:39,288   copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder
2026-05-07T11:03:39,290   copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder
2026-05-07T11:03:39,292   copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder
2026-05-07T11:03:39,294   creating build/lib/htmd/clustering
2026-05-07T11:03:39,295   copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering
2026-05-07T11:03:39,298   copying htmd/clustering/__init__.py -> build/lib/htmd/clustering
2026-05-07T11:03:39,299   copying htmd/clustering/regular.py -> build/lib/htmd/clustering
2026-05-07T11:03:39,302   creating build/lib/htmd/builder
2026-05-07T11:03:39,303   copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder
2026-05-07T11:03:39,305   copying htmd/builder/nonstandard.py -> build/lib/htmd/builder
2026-05-07T11:03:39,308   copying htmd/builder/builder.py -> build/lib/htmd/builder
2026-05-07T11:03:39,311   copying htmd/builder/__init__.py -> build/lib/htmd/builder
2026-05-07T11:03:39,313   copying htmd/builder/charmm.py -> build/lib/htmd/builder
2026-05-07T11:03:39,316   copying htmd/builder/ionize.py -> build/lib/htmd/builder
2026-05-07T11:03:39,318   copying htmd/builder/noncanonical.py -> build/lib/htmd/builder
2026-05-07T11:03:39,321   copying htmd/builder/solvate.py -> build/lib/htmd/builder
2026-05-07T11:03:39,323   copying htmd/builder/amber.py -> build/lib/htmd/builder
2026-05-07T11:03:39,376   creating build/lib/htmd/share
2026-05-07T11:03:39,377   copying htmd/share/license-checker -> build/lib/htmd/share
2026-05-07T11:03:39,384   creating build/lib/htmd/share/membranebuilder/lipids
2026-05-07T11:03:39,385   copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids
2026-05-07T11:03:39,388   creating build/lib/htmd/share/membranebuilder/lipids/dlpe
2026-05-07T11:03:39,389   copying htmd/share/membranebuilder/lipids/dlpe/dlpe.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpe
2026-05-07T11:03:39,391   creating build/lib/htmd/share/membranebuilder/lipids/dppa
2026-05-07T11:03:39,392   copying htmd/share/membranebuilder/lipids/dppa/dppa.cif -> build/lib/htmd/share/membranebuilder/lipids/dppa
2026-05-07T11:03:39,395   creating build/lib/htmd/share/membranebuilder/lipids/dmpe
2026-05-07T11:03:39,396   copying htmd/share/membranebuilder/lipids/dmpe/dmpe.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpe
2026-05-07T11:03:39,399   creating build/lib/htmd/share/membranebuilder/lipids/dopc
2026-05-07T11:03:39,400   copying htmd/share/membranebuilder/lipids/dopc/dopc.cif -> build/lib/htmd/share/membranebuilder/lipids/dopc
2026-05-07T11:03:39,403   creating build/lib/htmd/share/membranebuilder/lipids/dspc
2026-05-07T11:03:39,404   copying htmd/share/membranebuilder/lipids/dspc/dspc.cif -> build/lib/htmd/share/membranebuilder/lipids/dspc
2026-05-07T11:03:39,407   creating build/lib/htmd/share/membranebuilder/lipids/popg
2026-05-07T11:03:39,408   copying htmd/share/membranebuilder/lipids/popg/popg.cif -> build/lib/htmd/share/membranebuilder/lipids/popg
2026-05-07T11:03:39,411   creating build/lib/htmd/share/membranebuilder/lipids/dmpg
2026-05-07T11:03:39,412   copying htmd/share/membranebuilder/lipids/dmpg/dmpg.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpg
2026-05-07T11:03:39,414   creating build/lib/htmd/share/membranebuilder/lipids/sdpg
2026-05-07T11:03:39,415   copying htmd/share/membranebuilder/lipids/sdpg/sdpg.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpg
2026-05-07T11:03:39,418   creating build/lib/htmd/share/membranebuilder/lipids/sdpe
2026-05-07T11:03:39,419   copying htmd/share/membranebuilder/lipids/sdpe/sdpe.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpe
2026-05-07T11:03:39,422   creating build/lib/htmd/share/membranebuilder/lipids/dapg
2026-05-07T11:03:39,423   copying htmd/share/membranebuilder/lipids/dapg/dapg.cif -> build/lib/htmd/share/membranebuilder/lipids/dapg
2026-05-07T11:03:39,426   creating build/lib/htmd/share/membranebuilder/lipids/dope
2026-05-07T11:03:39,427   copying htmd/share/membranebuilder/lipids/dope/dope.cif -> build/lib/htmd/share/membranebuilder/lipids/dope
2026-05-07T11:03:39,430   creating build/lib/htmd/share/membranebuilder/lipids/sdpc
2026-05-07T11:03:39,431   copying htmd/share/membranebuilder/lipids/sdpc/sdpc.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpc
2026-05-07T11:03:39,434   creating build/lib/htmd/share/membranebuilder/lipids/dsps
2026-05-07T11:03:39,435   copying htmd/share/membranebuilder/lipids/dsps/dsps.cif -> build/lib/htmd/share/membranebuilder/lipids/dsps
2026-05-07T11:03:39,437   creating build/lib/htmd/share/membranebuilder/lipids/dlpc
2026-05-07T11:03:39,438   copying htmd/share/membranebuilder/lipids/dlpc/dlpc.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpc
2026-05-07T11:03:39,441   creating build/lib/htmd/share/membranebuilder/lipids/dlpg
2026-05-07T11:03:39,442   copying htmd/share/membranebuilder/lipids/dlpg/dlpg.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpg
2026-05-07T11:03:39,445   creating build/lib/htmd/share/membranebuilder/lipids/dmpa
2026-05-07T11:03:39,446   copying htmd/share/membranebuilder/lipids/dmpa/dmpa.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpa
2026-05-07T11:03:39,449   creating build/lib/htmd/share/membranebuilder/lipids/dppe
2026-05-07T11:03:39,450   copying htmd/share/membranebuilder/lipids/dppe/dppe.cif -> build/lib/htmd/share/membranebuilder/lipids/dppe
2026-05-07T11:03:39,452   creating build/lib/htmd/share/membranebuilder/lipids/dlpa
2026-05-07T11:03:39,453   copying htmd/share/membranebuilder/lipids/dlpa/dlpa.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpa
2026-05-07T11:03:39,456   creating build/lib/htmd/share/membranebuilder/lipids/dspg
2026-05-07T11:03:39,457   copying htmd/share/membranebuilder/lipids/dspg/dspg.cif -> build/lib/htmd/share/membranebuilder/lipids/dspg
2026-05-07T11:03:39,459   creating build/lib/htmd/share/membranebuilder/lipids/dapc
2026-05-07T11:03:39,460   copying htmd/share/membranebuilder/lipids/dapc/dapc.cif -> build/lib/htmd/share/membranebuilder/lipids/dapc
2026-05-07T11:03:39,463   creating build/lib/htmd/share/membranebuilder/lipids/popa
2026-05-07T11:03:39,464   copying htmd/share/membranebuilder/lipids/popa/popa.cif -> build/lib/htmd/share/membranebuilder/lipids/popa
2026-05-07T11:03:39,467   creating build/lib/htmd/share/membranebuilder/lipids/dppc
2026-05-07T11:03:39,468   copying htmd/share/membranebuilder/lipids/dppc/dppc.cif -> build/lib/htmd/share/membranebuilder/lipids/dppc
2026-05-07T11:03:39,471   creating build/lib/htmd/share/membranebuilder/lipids/dlps
2026-05-07T11:03:39,472   copying htmd/share/membranebuilder/lipids/dlps/dlps.cif -> build/lib/htmd/share/membranebuilder/lipids/dlps
2026-05-07T11:03:39,474   creating build/lib/htmd/share/membranebuilder/lipids/sdpa
2026-05-07T11:03:39,475   copying htmd/share/membranebuilder/lipids/sdpa/sdpa.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpa
2026-05-07T11:03:39,478   creating build/lib/htmd/share/membranebuilder/lipids/dmps
2026-05-07T11:03:39,479   copying htmd/share/membranebuilder/lipids/dmps/dmps.cif -> build/lib/htmd/share/membranebuilder/lipids/dmps
2026-05-07T11:03:39,482   creating build/lib/htmd/share/membranebuilder/lipids/sdps
2026-05-07T11:03:39,483   copying htmd/share/membranebuilder/lipids/sdps/sdps.cif -> build/lib/htmd/share/membranebuilder/lipids/sdps
2026-05-07T11:03:39,486   creating build/lib/htmd/share/membranebuilder/lipids/pops
2026-05-07T11:03:39,487   copying htmd/share/membranebuilder/lipids/pops/pops.cif -> build/lib/htmd/share/membranebuilder/lipids/pops
2026-05-07T11:03:39,490   creating build/lib/htmd/share/membranebuilder/lipids/daps
2026-05-07T11:03:39,491   copying htmd/share/membranebuilder/lipids/daps/daps.cif -> build/lib/htmd/share/membranebuilder/lipids/daps
2026-05-07T11:03:39,494   creating build/lib/htmd/share/membranebuilder/lipids/dpps
2026-05-07T11:03:39,495   copying htmd/share/membranebuilder/lipids/dpps/dpps.cif -> build/lib/htmd/share/membranebuilder/lipids/dpps
2026-05-07T11:03:39,497   creating build/lib/htmd/share/membranebuilder/lipids/dspa
2026-05-07T11:03:39,498   copying htmd/share/membranebuilder/lipids/dspa/dspa.cif -> build/lib/htmd/share/membranebuilder/lipids/dspa
2026-05-07T11:03:39,501   creating build/lib/htmd/share/membranebuilder/lipids/dmpc
2026-05-07T11:03:39,502   copying htmd/share/membranebuilder/lipids/dmpc/dmpc.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpc
2026-05-07T11:03:39,504   creating build/lib/htmd/share/membranebuilder/lipids/chl1
2026-05-07T11:03:39,505   copying htmd/share/membranebuilder/lipids/chl1/chl1.cif -> build/lib/htmd/share/membranebuilder/lipids/chl1
2026-05-07T11:03:39,508   creating build/lib/htmd/share/membranebuilder/lipids/dape
2026-05-07T11:03:39,509   copying htmd/share/membranebuilder/lipids/dape/dape.cif -> build/lib/htmd/share/membranebuilder/lipids/dape
2026-05-07T11:03:39,512   creating build/lib/htmd/share/membranebuilder/lipids/popc
2026-05-07T11:03:39,513   copying htmd/share/membranebuilder/lipids/popc/popc.cif -> build/lib/htmd/share/membranebuilder/lipids/popc
2026-05-07T11:03:39,515   creating build/lib/htmd/share/membranebuilder/lipids/dopa
2026-05-07T11:03:39,516   copying htmd/share/membranebuilder/lipids/dopa/dopa.cif -> build/lib/htmd/share/membranebuilder/lipids/dopa
2026-05-07T11:03:39,519   creating build/lib/htmd/share/membranebuilder/lipids/dapa
2026-05-07T11:03:39,520   copying htmd/share/membranebuilder/lipids/dapa/dapa.cif -> build/lib/htmd/share/membranebuilder/lipids/dapa
2026-05-07T11:03:39,523   creating build/lib/htmd/share/membranebuilder/lipids/dops
2026-05-07T11:03:39,524   copying htmd/share/membranebuilder/lipids/dops/dops.cif -> build/lib/htmd/share/membranebuilder/lipids/dops
2026-05-07T11:03:39,527   creating build/lib/htmd/share/membranebuilder/lipids/dopg
2026-05-07T11:03:39,528   copying htmd/share/membranebuilder/lipids/dopg/dopg.cif -> build/lib/htmd/share/membranebuilder/lipids/dopg
2026-05-07T11:03:39,531   creating build/lib/htmd/share/membranebuilder/lipids/dppg
2026-05-07T11:03:39,532   copying htmd/share/membranebuilder/lipids/dppg/dppg.cif -> build/lib/htmd/share/membranebuilder/lipids/dppg
2026-05-07T11:03:39,534   creating build/lib/htmd/share/membranebuilder/lipids/pope
2026-05-07T11:03:39,535   copying htmd/share/membranebuilder/lipids/pope/pope.cif -> build/lib/htmd/share/membranebuilder/lipids/pope
2026-05-07T11:03:39,539   creating build/lib/htmd/share/membranebuilder/lipids/dspe
2026-05-07T11:03:39,540   copying htmd/share/membranebuilder/lipids/dspe/dspe.cif -> build/lib/htmd/share/membranebuilder/lipids/dspe
2026-05-07T11:03:39,542   creating build/lib/htmd/share/solvate
2026-05-07T11:03:39,543   copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate
2026-05-07T11:03:39,578   creating build/lib/htmd/share/builder
2026-05-07T11:03:39,580   copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder
2026-05-07T11:03:39,582   copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder
2026-05-07T11:03:39,589   copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder
2026-05-07T11:03:39,591   creating build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,593   copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,596   copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,599   copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,601   copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,604   copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,607   copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,610   copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,613   copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,615   copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,618   copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,620   copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,623   copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,625   copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,628   copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,630   copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,633   copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,635   copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,638   copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,640   copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,643   copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,645   copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,648   copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:39,650   creating build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,652   copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,654   copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,657   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,659   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,661   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,664   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,666   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,669   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,671   copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,673   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,676   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,678   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,681   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,683   copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,686   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,688   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,690   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,693   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,695   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,698   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,700   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,702   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,705   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,707   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,710   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,712   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,714   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,717   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,719   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,722   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,724   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,726   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,729   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,731   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,734   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,736   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,738   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,741   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,743   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,746   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,748   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,751   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,753   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,756   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,758   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,761   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,763   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,765   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,767   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,769   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,771   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,773   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,775   copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,777   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,779   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,781   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,783   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,785   copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,787   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,789   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,791   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,794   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,796   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,798   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,800   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,802   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,804   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,806   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,808   copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,810   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,813   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,815   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,817   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,819   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,821   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,823   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,825   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,827   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,829   copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,831   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,833   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,835   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,837   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,839   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,841   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,843   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,845   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,848   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,850   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,852   copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,854   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,856   copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,859   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,861   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,863   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,865   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,868   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,871   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,874   copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,876   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,879   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,882   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,885   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,888   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,890   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,893   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,896   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,899   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,902   copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,905   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,908   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,911   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,914   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,917   copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,924   copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,926   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,930   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,932   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,935   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,938   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,941   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,944   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,947   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,950   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,953   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,956   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,959   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,961   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,964   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,967   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,969   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,971   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:39,973   creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:39,974   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:39,977   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:39,979   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:39,982   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:39,986   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:39,988   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:39,990   creating build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:39,991   copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:39,993   copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:39,995   copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:39,997   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:39,999   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,001   copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,003   copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,005   copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,007   copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,009   copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,012   copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,014   copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,016   copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,018   copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,021   copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,023   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,025   copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,027   copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,029   copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,031   copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,033   copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,035   copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,037   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,040   copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,042   copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,044   copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,046   copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,048   copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,051   copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,053   copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,055   copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,057   copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,059   copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,061   copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,063   copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,065   copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,067   copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,069   copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,071   copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,073   copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,076   copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,078   copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,080   copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,082   copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,084   copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,087   copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,089   copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,091   copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:40,094   creating build/lib/htmd/share/builder/caps
2026-05-07T11:03:40,095   copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps
2026-05-07T11:03:40,097   copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps
2026-05-07T11:03:40,099   copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps
2026-05-07T11:03:40,101   copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps
2026-05-07T11:03:40,103   copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps
2026-05-07T11:03:40,105   creating build/lib/htmd/share/builder/charmmfiles
2026-05-07T11:03:40,106   copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles
2026-05-07T11:03:40,109   copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles
2026-05-07T11:03:40,111   creating build/lib/htmd/share/builder/charmmfiles/str
2026-05-07T11:03:40,112   copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str
2026-05-07T11:03:40,115   creating build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:40,116   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:40,120   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:40,142   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:40,145   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:40,151   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:40,169   creating build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:40,170   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:40,190   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:40,210   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:40,213   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:40,218   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:40,224   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:40,231   creating build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,233   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,237   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,252   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,260   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,291   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,294   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,298   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,311   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,315   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,323   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,340   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,345   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,348   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,355   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,358   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,363   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,407   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,411   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,417   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:40,442   creating build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-05-07T11:03:40,443   copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-05-07T11:03:40,446   creating build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,447   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,449   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,453   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,456   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,459   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,462   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,467   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,473   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,478   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,482   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,485   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,487   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:40,515   creating build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:40,516   copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:40,518   copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:40,521   copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:40,523   copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:40,525   copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:40,528   creating build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,529   copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,533   copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,540   copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,552   copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,554   copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,558   copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,562   copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,566   copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,611   copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,623   copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:40,627   creating build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,629   copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,635   copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,639   copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,662   copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,667   copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,671   copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,675   copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,684   copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,689   copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,698   copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:40,732   installing to build/bdist.linux-armv7l/wheel
2026-05-07T11:03:40,733   running install
2026-05-07T11:03:40,769   running install_lib
2026-05-07T11:03:40,778   creating build/bdist.linux-armv7l/wheel
2026-05-07T11:03:40,781   creating build/bdist.linux-armv7l/wheel/htmd
2026-05-07T11:03:40,783   copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:40,786   copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:40,790   creating build/bdist.linux-armv7l/wheel/htmd/share
2026-05-07T11:03:40,792   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder
2026-05-07T11:03:40,795   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids
2026-05-07T11:03:40,797   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpe
2026-05-07T11:03:40,799   copying build/lib/htmd/share/membranebuilder/lipids/dlpe/dlpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpe
2026-05-07T11:03:40,802   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppa
2026-05-07T11:03:40,804   copying build/lib/htmd/share/membranebuilder/lipids/dppa/dppa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppa
2026-05-07T11:03:40,808   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpe
2026-05-07T11:03:40,810   copying build/lib/htmd/share/membranebuilder/lipids/dmpe/dmpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpe
2026-05-07T11:03:40,813   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopc
2026-05-07T11:03:40,814   copying build/lib/htmd/share/membranebuilder/lipids/dopc/dopc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopc
2026-05-07T11:03:40,817   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspc
2026-05-07T11:03:40,819   copying build/lib/htmd/share/membranebuilder/lipids/dspc/dspc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspc
2026-05-07T11:03:40,823   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popg
2026-05-07T11:03:40,824   copying build/lib/htmd/share/membranebuilder/lipids/popg/popg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popg
2026-05-07T11:03:40,828   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpg
2026-05-07T11:03:40,829   copying build/lib/htmd/share/membranebuilder/lipids/dmpg/dmpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpg
2026-05-07T11:03:40,833   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpg
2026-05-07T11:03:40,834   copying build/lib/htmd/share/membranebuilder/lipids/sdpg/sdpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpg
2026-05-07T11:03:40,838   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpe
2026-05-07T11:03:40,839   copying build/lib/htmd/share/membranebuilder/lipids/sdpe/sdpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpe
2026-05-07T11:03:40,843   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapg
2026-05-07T11:03:40,844   copying build/lib/htmd/share/membranebuilder/lipids/dapg/dapg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapg
2026-05-07T11:03:40,847   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dope
2026-05-07T11:03:40,849   copying build/lib/htmd/share/membranebuilder/lipids/dope/dope.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dope
2026-05-07T11:03:40,852   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpc
2026-05-07T11:03:40,854   copying build/lib/htmd/share/membranebuilder/lipids/sdpc/sdpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpc
2026-05-07T11:03:40,857   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dsps
2026-05-07T11:03:40,859   copying build/lib/htmd/share/membranebuilder/lipids/dsps/dsps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dsps
2026-05-07T11:03:40,863   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpc
2026-05-07T11:03:40,864   copying build/lib/htmd/share/membranebuilder/lipids/dlpc/dlpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpc
2026-05-07T11:03:40,869   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpg
2026-05-07T11:03:40,870   copying build/lib/htmd/share/membranebuilder/lipids/dlpg/dlpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpg
2026-05-07T11:03:40,875   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpa
2026-05-07T11:03:40,876   copying build/lib/htmd/share/membranebuilder/lipids/dmpa/dmpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpa
2026-05-07T11:03:40,880   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppe
2026-05-07T11:03:40,882   copying build/lib/htmd/share/membranebuilder/lipids/dppe/dppe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppe
2026-05-07T11:03:40,886   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpa
2026-05-07T11:03:40,888   copying build/lib/htmd/share/membranebuilder/lipids/dlpa/dlpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpa
2026-05-07T11:03:40,891   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspg
2026-05-07T11:03:40,893   copying build/lib/htmd/share/membranebuilder/lipids/dspg/dspg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspg
2026-05-07T11:03:40,897   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapc
2026-05-07T11:03:40,898   copying build/lib/htmd/share/membranebuilder/lipids/dapc/dapc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapc
2026-05-07T11:03:40,903   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popa
2026-05-07T11:03:40,904   copying build/lib/htmd/share/membranebuilder/lipids/popa/popa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popa
2026-05-07T11:03:40,907   copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids
2026-05-07T11:03:40,910   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppc
2026-05-07T11:03:40,911   copying build/lib/htmd/share/membranebuilder/lipids/dppc/dppc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppc
2026-05-07T11:03:40,914   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlps
2026-05-07T11:03:40,916   copying build/lib/htmd/share/membranebuilder/lipids/dlps/dlps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlps
2026-05-07T11:03:40,920   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpa
2026-05-07T11:03:40,921   copying build/lib/htmd/share/membranebuilder/lipids/sdpa/sdpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpa
2026-05-07T11:03:40,925   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmps
2026-05-07T11:03:40,927   copying build/lib/htmd/share/membranebuilder/lipids/dmps/dmps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmps
2026-05-07T11:03:40,931   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdps
2026-05-07T11:03:40,932   copying build/lib/htmd/share/membranebuilder/lipids/sdps/sdps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdps
2026-05-07T11:03:40,936   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pops
2026-05-07T11:03:40,938   copying build/lib/htmd/share/membranebuilder/lipids/pops/pops.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pops
2026-05-07T11:03:40,942   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/daps
2026-05-07T11:03:40,943   copying build/lib/htmd/share/membranebuilder/lipids/daps/daps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/daps
2026-05-07T11:03:40,947   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dpps
2026-05-07T11:03:40,949   copying build/lib/htmd/share/membranebuilder/lipids/dpps/dpps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dpps
2026-05-07T11:03:40,952   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspa
2026-05-07T11:03:40,954   copying build/lib/htmd/share/membranebuilder/lipids/dspa/dspa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspa
2026-05-07T11:03:40,957   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpc
2026-05-07T11:03:40,959   copying build/lib/htmd/share/membranebuilder/lipids/dmpc/dmpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpc
2026-05-07T11:03:40,963   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1
2026-05-07T11:03:40,964   copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1
2026-05-07T11:03:40,968   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dape
2026-05-07T11:03:40,969   copying build/lib/htmd/share/membranebuilder/lipids/dape/dape.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dape
2026-05-07T11:03:40,973   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc
2026-05-07T11:03:40,974   copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc
2026-05-07T11:03:40,978   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopa
2026-05-07T11:03:40,979   copying build/lib/htmd/share/membranebuilder/lipids/dopa/dopa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopa
2026-05-07T11:03:40,982   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapa
2026-05-07T11:03:40,984   copying build/lib/htmd/share/membranebuilder/lipids/dapa/dapa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapa
2026-05-07T11:03:40,987   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dops
2026-05-07T11:03:40,988   copying build/lib/htmd/share/membranebuilder/lipids/dops/dops.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dops
2026-05-07T11:03:40,991   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopg
2026-05-07T11:03:40,993   copying build/lib/htmd/share/membranebuilder/lipids/dopg/dopg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopg
2026-05-07T11:03:40,996   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppg
2026-05-07T11:03:40,997   copying build/lib/htmd/share/membranebuilder/lipids/dppg/dppg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppg
2026-05-07T11:03:41,001   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope
2026-05-07T11:03:41,002   copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope
2026-05-07T11:03:41,005   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspe
2026-05-07T11:03:41,007   copying build/lib/htmd/share/membranebuilder/lipids/dspe/dspe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspe
2026-05-07T11:03:41,010   creating build/bdist.linux-armv7l/wheel/htmd/share/solvate
2026-05-07T11:03:41,011   copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate
2026-05-07T11:03:41,051   creating build/bdist.linux-armv7l/wheel/htmd/share/builder
2026-05-07T11:03:41,052   copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-05-07T11:03:41,055   copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-05-07T11:03:41,061   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles
2026-05-07T11:03:41,063   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,064   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,066   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,068   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,070   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,072   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,075   copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,078   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,079   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,081   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,083   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,085   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,086   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,088   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,090   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,092   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,093   copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,095   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,097   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,099   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,101   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,102   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,105   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-07T11:03:41,109   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,110   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,112   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,113   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,115   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,117   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,119   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,120   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,122   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,124   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,125   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,127   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,129   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,131   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,132   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,134   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,136   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,138   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,139   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,141   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,143   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,144   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,146   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,148   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,150   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,152   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,153   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,155   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,157   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,159   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,161   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,162   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,164   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,166   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,168   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,170   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,172   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,173   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,175   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,177   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,179   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,181   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,182   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,184   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,186   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,188   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,190   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,191   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,193   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,195   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,197   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,198   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,200   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,202   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,204   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,206   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,208   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,210   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,212   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,214   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,216   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,217   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,219   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,221   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,223   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,224   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,226   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,228   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,230   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,232   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,234   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,235   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,237   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,239   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,241   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,242   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,244   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,246   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,248   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,250   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,252   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,254   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,255   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,257   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,259   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,260   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,262   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,264   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,265   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,267   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,269   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,271   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,273   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,274   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,276   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,278   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,280   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,281   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,283   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,285   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,286   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,288   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,290   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,291   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,293   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,295   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,297   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,298   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,300   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,302   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,304   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,305   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,307   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,308   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,310   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,314   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,316   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,318   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,320   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,322   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,324   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,326   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,327   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,329   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,331   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,333   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,335   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,337   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,338   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,340   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,342   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,344   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,346   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-07T11:03:41,349   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:41,350   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:41,352   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:41,353   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:41,356   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:41,359   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:41,361   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-07T11:03:41,364   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,365   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,367   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,369   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,371   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,373   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,374   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,376   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,378   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,380   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,382   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,385   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,386   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,388   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,390   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,392   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,394   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,395   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,397   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,399   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,401   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,402   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,404   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,406   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,408   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,410   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,412   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,414   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,415   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,417   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,419   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,421   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,423   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,424   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,426   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,428   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,430   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,432   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,434   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,436   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,438   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,440   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,441   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,443   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,445   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,447   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,448   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,450   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,452   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-07T11:03:41,455   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps
2026-05-07T11:03:41,456   copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-07T11:03:41,458   copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-07T11:03:41,459   copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-07T11:03:41,461   copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-07T11:03:41,463   copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-07T11:03:41,464   copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-05-07T11:03:41,467   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles
2026-05-07T11:03:41,468   copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-05-07T11:03:41,471   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str
2026-05-07T11:03:41,472   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:41,473   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:41,477   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:41,512   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:41,515   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:41,522   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-07T11:03:41,547   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:41,549   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:41,580   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:41,600   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:41,603   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:41,608   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:41,613   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-07T11:03:41,620   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,621   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,626   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,644   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,653   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,684   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,686   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,690   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,702   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,706   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,713   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,731   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,736   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,739   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,746   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,749   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,753   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,787   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,791   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,796   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-07T11:03:41,821   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd
2026-05-07T11:03:41,822   copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd
2026-05-07T11:03:41,825   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,826   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,829   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,832   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,835   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,837   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,840   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,844   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,850   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,854   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,858   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,861   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,863   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-07T11:03:41,891   copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str
2026-05-07T11:03:41,895   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:41,896   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:41,898   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:41,900   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:41,902   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:41,904   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-07T11:03:41,907   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2026-05-07T11:03:41,908   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-07T11:03:41,912   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-07T11:03:41,918   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-07T11:03:41,927   copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-07T11:03:41,929   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-07T11:03:41,932   copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-07T11:03:41,936   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-07T11:03:41,940   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-07T11:03:41,987   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-07T11:03:42,000   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-07T11:03:42,004   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,005   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,011   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,014   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,033   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,037   copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,039   copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,042   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,048   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,052   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,058   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-07T11:03:42,064   copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-05-07T11:03:42,067   copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share
2026-05-07T11:03:42,077   creating build/bdist.linux-armv7l/wheel/htmd/adaptive
2026-05-07T11:03:42,078   copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-07T11:03:42,081   copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-07T11:03:42,084   copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-07T11:03:42,086   copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-07T11:03:42,089   copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-07T11:03:42,092   copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-07T11:03:42,094   copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-07T11:03:42,098   creating build/bdist.linux-armv7l/wheel/htmd/projections
2026-05-07T11:03:42,099   copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-07T11:03:42,101   copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-07T11:03:42,103   copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-07T11:03:42,106   copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-07T11:03:42,109   copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-07T11:03:42,111   copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,114   copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,117   copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,119   copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,122   copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,124   copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,127   creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2026-05-07T11:03:42,128   copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-07T11:03:42,132   copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-07T11:03:42,134   copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-07T11:03:42,136   copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-07T11:03:42,139   copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-07T11:03:42,141   copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,143   copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,146   copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,150   copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,152   copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,155   copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,158   copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,162   creating build/bdist.linux-armv7l/wheel/htmd/clustering
2026-05-07T11:03:42,164   copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-05-07T11:03:42,166   copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-05-07T11:03:42,169   copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-05-07T11:03:42,171   copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,175   copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,177   copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,180   copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,182   copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-07T11:03:42,184   creating build/bdist.linux-armv7l/wheel/htmd/builder
2026-05-07T11:03:42,185   copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-07T11:03:42,188   copying build/lib/htmd/builder/nonstandard.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-07T11:03:42,192   copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-07T11:03:42,195   copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-07T11:03:42,197   copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-07T11:03:42,200   copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-07T11:03:42,202   copying build/lib/htmd/builder/noncanonical.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-07T11:03:42,205   copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-07T11:03:42,207   copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-07T11:03:42,210   running install_egg_info
2026-05-07T11:03:42,223   running egg_info
2026-05-07T11:03:42,230   writing acellera_htmd.egg-info/PKG-INFO
2026-05-07T11:03:42,234   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-05-07T11:03:42,235   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-05-07T11:03:42,239   writing requirements to acellera_htmd.egg-info/requires.txt
2026-05-07T11:03:42,240   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-05-07T11:03:42,340   /tmp/pip-build-env-be6cdngr/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-07T11:03:42,341     return get_active_overrides().subprocess_timeout
2026-05-07T11:03:42,350   listing git files failed - pretending there aren't any
2026-05-07T11:03:42,356   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-07T11:03:42,388   reading manifest template 'MANIFEST.in'
2026-05-07T11:03:42,417   no previously-included directories found matching 'htmd/data'
2026-05-07T11:03:42,419   no previously-included directories found matching '.github'
2026-05-07T11:03:42,420   no previously-included directories found matching 'doc'
2026-05-07T11:03:42,422   no previously-included directories found matching 'package'
2026-05-07T11:03:42,423   no previously-included directories found matching 'tests'
2026-05-07T11:03:42,425   no previously-included directories found matching 'tutorials'
2026-05-07T11:03:42,426   warning: no previously-included files found matching 'Makefile'
2026-05-07T11:03:42,427   adding license file 'LICENSE'
2026-05-07T11:03:42,451   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-07T11:03:42,453   Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.7.1-py3.11.egg-info
2026-05-07T11:03:42,466   running install_scripts
2026-05-07T11:03:42,478   creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.7.1.dist-info/WHEEL
2026-05-07T11:03:42,481   creating '/tmp/pip-wheel-8yty9f1p/.tmp-brc119xi/acellera_htmd-2.7.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-05-07T11:03:42,484   adding 'acellera_htmd-2.7.1.dist-info/licenses/LICENSE'
2026-05-07T11:03:42,486   adding 'htmd/__init__.py'
2026-05-07T11:03:42,488   adding 'htmd/config.py'
2026-05-07T11:03:42,489   adding 'htmd/decorators.py'
2026-05-07T11:03:42,491   adding 'htmd/dock.py'
2026-05-07T11:03:42,493   adding 'htmd/home.py'
2026-05-07T11:03:42,495   adding 'htmd/kinetics.py'
2026-05-07T11:03:42,497   adding 'htmd/latest.py'
2026-05-07T11:03:42,498   adding 'htmd/license.py'
2026-05-07T11:03:42,505   adding 'htmd/metricdata.py'
2026-05-07T11:03:42,507   adding 'htmd/metricdatagenerator.py'
2026-05-07T11:03:42,516   adding 'htmd/model.py'
2026-05-07T11:03:42,518   adding 'htmd/mutualinformation.py'
2026-05-07T11:03:42,519   adding 'htmd/parallelprogress.py'
2026-05-07T11:03:42,522   adding 'htmd/pathplanning.py'
2026-05-07T11:03:42,523   adding 'htmd/session.py'
2026-05-07T11:03:42,526   adding 'htmd/simlist.py'
2026-05-07T11:03:42,527   adding 'htmd/ui.py'
2026-05-07T11:03:42,529   adding 'htmd/units.py'
2026-05-07T11:03:42,530   adding 'htmd/util.py'
2026-05-07T11:03:42,531   adding 'htmd/versionwarnings.py'
2026-05-07T11:03:42,533   adding 'htmd/adaptive/__init__.py'
2026-05-07T11:03:42,536   adding 'htmd/adaptive/adaptive.py'
2026-05-07T11:03:42,539   adding 'htmd/adaptive/adaptivebandit.py'
2026-05-07T11:03:42,542   adding 'htmd/adaptive/adaptivegoal.py'
2026-05-07T11:03:42,544   adding 'htmd/adaptive/adaptivegoaleg.py'
2026-05-07T11:03:42,547   adding 'htmd/adaptive/adaptiverun.py'
2026-05-07T11:03:42,548   adding 'htmd/adaptive/util.py'
2026-05-07T11:03:42,550   adding 'htmd/builder/__init__.py'
2026-05-07T11:03:42,558   adding 'htmd/builder/amber.py'
2026-05-07T11:03:42,561   adding 'htmd/builder/builder.py'
2026-05-07T11:03:42,565   adding 'htmd/builder/charmm.py'
2026-05-07T11:03:42,567   adding 'htmd/builder/ionize.py'
2026-05-07T11:03:42,569   adding 'htmd/builder/loopmodeler.py'
2026-05-07T11:03:42,572   adding 'htmd/builder/noncanonical.py'
2026-05-07T11:03:42,580   adding 'htmd/builder/nonstandard.py'
2026-05-07T11:03:42,583   adding 'htmd/builder/solvate.py'
2026-05-07T11:03:42,585   adding 'htmd/clustering/__init__.py'
2026-05-07T11:03:42,586   adding 'htmd/clustering/kcenters.py'
2026-05-07T11:03:42,588   adding 'htmd/clustering/regular.py'
2026-05-07T11:03:42,590   adding 'htmd/membranebuilder/__init__.py'
2026-05-07T11:03:42,594   adding 'htmd/membranebuilder/build_membrane.py'
2026-05-07T11:03:42,596   adding 'htmd/membranebuilder/globalminimization.py'
2026-05-07T11:03:42,598   adding 'htmd/membranebuilder/ljfluid.py'
2026-05-07T11:03:42,600   adding 'htmd/membranebuilder/ringpenetration.py'
2026-05-07T11:03:42,601   adding 'htmd/projections/__init__.py'
2026-05-07T11:03:42,603   adding 'htmd/projections/gwpca.py'
2026-05-07T11:03:42,604   adding 'htmd/projections/kmeanstri.py'
2026-05-07T11:03:42,606   adding 'htmd/projections/metric.py'
2026-05-07T11:03:42,609   adding 'htmd/projections/tica.py'
2026-05-07T11:03:42,666   adding 'htmd/share/license-checker'
2026-05-07T11:03:42,697   adding 'htmd/share/builder/charmmlipid2amber.csv'
2026-05-07T11:03:42,700   adding 'htmd/share/builder/triala_capped.cif'
2026-05-07T11:03:42,702   adding 'htmd/share/builder/triala_capped.mmtf'
2026-05-07T11:03:42,704   adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod'
2026-05-07T11:03:42,706   adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi'
2026-05-07T11:03:42,707   adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod'
2026-05-07T11:03:42,709   adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi'
2026-05-07T11:03:42,710   adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod'
2026-05-07T11:03:42,711   adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi'
2026-05-07T11:03:42,713   adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod'
2026-05-07T11:03:42,714   adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi'
2026-05-07T11:03:42,716   adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod'
2026-05-07T11:03:42,717   adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi'
2026-05-07T11:03:42,719   adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod'
2026-05-07T11:03:42,720   adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi'
2026-05-07T11:03:42,722   adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod'
2026-05-07T11:03:42,723   adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi'
2026-05-07T11:03:42,725   adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod'
2026-05-07T11:03:42,727   adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi'
2026-05-07T11:03:42,728   adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod'
2026-05-07T11:03:42,730   adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi'
2026-05-07T11:03:42,731   adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod'
2026-05-07T11:03:42,733   adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi'
2026-05-07T11:03:42,734   adding 'htmd/share/builder/amberfiles/cofactors/README.txt'
2026-05-07T11:03:42,743   adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in'
2026-05-07T11:03:42,747   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod'
2026-05-07T11:03:42,748   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi'
2026-05-07T11:03:42,749   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod'
2026-05-07T11:03:42,750   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi'
2026-05-07T11:03:42,752   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod'
2026-05-07T11:03:42,753   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi'
2026-05-07T11:03:42,754   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod'
2026-05-07T11:03:42,756   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi'
2026-05-07T11:03:42,757   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod'
2026-05-07T11:03:42,758   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi'
2026-05-07T11:03:42,760   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod'
2026-05-07T11:03:42,761   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi'
2026-05-07T11:03:42,762   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod'
2026-05-07T11:03:42,764   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi'
2026-05-07T11:03:42,765   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod'
2026-05-07T11:03:42,766   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi'
2026-05-07T11:03:42,767   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod'
2026-05-07T11:03:42,769   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi'
2026-05-07T11:03:42,770   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod'
2026-05-07T11:03:42,771   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi'
2026-05-07T11:03:42,772   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod'
2026-05-07T11:03:42,774   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi'
2026-05-07T11:03:42,775   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod'
2026-05-07T11:03:42,776   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi'
2026-05-07T11:03:42,777   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod'
2026-05-07T11:03:42,779   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi'
2026-05-07T11:03:42,780   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod'
2026-05-07T11:03:42,781   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi'
2026-05-07T11:03:42,783   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod'
2026-05-07T11:03:42,784   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi'
2026-05-07T11:03:42,785   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod'
2026-05-07T11:03:42,787   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi'
2026-05-07T11:03:42,788   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod'
2026-05-07T11:03:42,789   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi'
2026-05-07T11:03:42,790   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod'
2026-05-07T11:03:42,792   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi'
2026-05-07T11:03:42,793   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod'
2026-05-07T11:03:42,794   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi'
2026-05-07T11:03:42,795   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod'
2026-05-07T11:03:42,796   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi'
2026-05-07T11:03:42,797   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod'
2026-05-07T11:03:42,799   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi'
2026-05-07T11:03:42,800   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod'
2026-05-07T11:03:42,801   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi'
2026-05-07T11:03:42,802   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod'
2026-05-07T11:03:42,806   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi'
2026-05-07T11:03:42,807   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod'
2026-05-07T11:03:42,809   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi'
2026-05-07T11:03:42,810   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod'
2026-05-07T11:03:42,811   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi'
2026-05-07T11:03:42,812   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod'
2026-05-07T11:03:42,814   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi'
2026-05-07T11:03:42,815   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod'
2026-05-07T11:03:42,816   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi'
2026-05-07T11:03:42,817   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod'
2026-05-07T11:03:42,819   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi'
2026-05-07T11:03:42,820   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod'
2026-05-07T11:03:42,821   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi'
2026-05-07T11:03:42,822   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod'
2026-05-07T11:03:42,824   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi'
2026-05-07T11:03:42,825   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod'
2026-05-07T11:03:42,826   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi'
2026-05-07T11:03:42,827   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod'
2026-05-07T11:03:42,829   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi'
2026-05-07T11:03:42,830   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod'
2026-05-07T11:03:42,831   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi'
2026-05-07T11:03:42,833   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod'
2026-05-07T11:03:42,834   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi'
2026-05-07T11:03:42,835   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod'
2026-05-07T11:03:42,837   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi'
2026-05-07T11:03:42,838   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod'
2026-05-07T11:03:42,839   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi'
2026-05-07T11:03:42,840   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod'
2026-05-07T11:03:42,842   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi'
2026-05-07T11:03:42,843   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod'
2026-05-07T11:03:42,844   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi'
2026-05-07T11:03:42,845   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod'
2026-05-07T11:03:42,847   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi'
2026-05-07T11:03:42,848   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod'
2026-05-07T11:03:42,849   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi'
2026-05-07T11:03:42,850   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod'
2026-05-07T11:03:42,852   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi'
2026-05-07T11:03:42,853   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod'
2026-05-07T11:03:42,854   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi'
2026-05-07T11:03:42,855   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod'
2026-05-07T11:03:42,857   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi'
2026-05-07T11:03:42,858   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod'
2026-05-07T11:03:42,859   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi'
2026-05-07T11:03:42,860   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod'
2026-05-07T11:03:42,862   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi'
2026-05-07T11:03:42,863   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod'
2026-05-07T11:03:42,864   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi'
2026-05-07T11:03:42,865   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod'
2026-05-07T11:03:42,866   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi'
2026-05-07T11:03:42,868   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod'
2026-05-07T11:03:42,869   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi'
2026-05-07T11:03:42,870   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod'
2026-05-07T11:03:42,872   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi'
2026-05-07T11:03:42,873   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod'
2026-05-07T11:03:42,874   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi'
2026-05-07T11:03:42,875   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod'
2026-05-07T11:03:42,877   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi'
2026-05-07T11:03:42,878   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod'
2026-05-07T11:03:42,879   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi'
2026-05-07T11:03:42,880   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod'
2026-05-07T11:03:42,882   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi'
2026-05-07T11:03:42,883   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod'
2026-05-07T11:03:42,884   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi'
2026-05-07T11:03:42,885   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod'
2026-05-07T11:03:42,887   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi'
2026-05-07T11:03:42,888   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod'
2026-05-07T11:03:42,889   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi'
2026-05-07T11:03:42,890   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod'
2026-05-07T11:03:42,891   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi'
2026-05-07T11:03:42,893   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod'
2026-05-07T11:03:42,894   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi'
2026-05-07T11:03:42,895   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod'
2026-05-07T11:03:42,897   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi'
2026-05-07T11:03:42,898   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod'
2026-05-07T11:03:42,899   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi'
2026-05-07T11:03:42,901   adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt'
2026-05-07T11:03:42,902   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod'
2026-05-07T11:03:42,903   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi'
2026-05-07T11:03:42,904   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod'
2026-05-07T11:03:42,906   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi'
2026-05-07T11:03:42,907   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod'
2026-05-07T11:03:42,909   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi'
2026-05-07T11:03:42,910   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod'
2026-05-07T11:03:42,911   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi'
2026-05-07T11:03:42,913   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod'
2026-05-07T11:03:42,914   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi'
2026-05-07T11:03:42,935   adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in'
2026-05-07T11:03:42,938   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt'
2026-05-07T11:03:42,940   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod'
2026-05-07T11:03:42,944   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib'
2026-05-07T11:03:42,946   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in'
2026-05-07T11:03:42,948   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log'
2026-05-07T11:03:42,949   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15'
2026-05-07T11:03:42,951   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod'
2026-05-07T11:03:42,952   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi'
2026-05-07T11:03:42,954   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod'
2026-05-07T11:03:42,955   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi'
2026-05-07T11:03:42,956   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod'
2026-05-07T11:03:42,958   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi'
2026-05-07T11:03:42,959   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod'
2026-05-07T11:03:42,960   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi'
2026-05-07T11:03:42,961   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod'
2026-05-07T11:03:42,963   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi'
2026-05-07T11:03:42,964   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod'
2026-05-07T11:03:42,965   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi'
2026-05-07T11:03:42,966   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod'
2026-05-07T11:03:42,968   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi'
2026-05-07T11:03:42,969   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod'
2026-05-07T11:03:42,970   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi'
2026-05-07T11:03:42,971   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod'
2026-05-07T11:03:42,973   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi'
2026-05-07T11:03:42,974   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod'
2026-05-07T11:03:42,975   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi'
2026-05-07T11:03:42,976   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod'
2026-05-07T11:03:42,978   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi'
2026-05-07T11:03:42,979   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod'
2026-05-07T11:03:42,980   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi'
2026-05-07T11:03:42,981   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod'
2026-05-07T11:03:42,983   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi'
2026-05-07T11:03:42,984   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod'
2026-05-07T11:03:42,985   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi'
2026-05-07T11:03:42,986   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod'
2026-05-07T11:03:42,988   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi'
2026-05-07T11:03:42,989   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod'
2026-05-07T11:03:42,990   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi'
2026-05-07T11:03:42,992   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod'
2026-05-07T11:03:42,993   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi'
2026-05-07T11:03:42,994   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod'
2026-05-07T11:03:42,996   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi'
2026-05-07T11:03:42,997   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod'
2026-05-07T11:03:42,998   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi'
2026-05-07T11:03:42,999   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod'
2026-05-07T11:03:43,001   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi'
2026-05-07T11:03:43,002   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod'
2026-05-07T11:03:43,004   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi'
2026-05-07T11:03:43,005   adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt'
2026-05-07T11:03:43,006   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod'
2026-05-07T11:03:43,007   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi'
2026-05-07T11:03:43,008   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod'
2026-05-07T11:03:43,010   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi'
2026-05-07T11:03:43,018   adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in'
2026-05-07T11:03:43,020   adding 'htmd/share/builder/caps/ACE.cif'
2026-05-07T11:03:43,021   adding 'htmd/share/builder/caps/ACE.pdb'
2026-05-07T11:03:43,022   adding 'htmd/share/builder/caps/NHE.pdb'
2026-05-07T11:03:43,024   adding 'htmd/share/builder/caps/NME.cif'
2026-05-07T11:03:43,025   adding 'htmd/share/builder/caps/NME.pdb'
2026-05-07T11:03:43,027   adding 'htmd/share/builder/charmmfiles/Makefile'
2026-05-07T11:03:43,028   adding 'htmd/share/builder/charmmfiles/README.md'
2026-05-07T11:03:43,041   adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm'
2026-05-07T11:03:43,056   adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm'
2026-05-07T11:03:43,059   adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm'
2026-05-07T11:03:43,074   adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm'
2026-05-07T11:03:43,161   adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm'
2026-05-07T11:03:43,170   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm'
2026-05-07T11:03:43,174   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm'
2026-05-07T11:03:43,182   adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm'
2026-05-07T11:03:43,197   adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm'
2026-05-07T11:03:43,200   adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm'
2026-05-07T11:03:43,203   adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str'
2026-05-07T11:03:43,279   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str'
2026-05-07T11:03:43,288   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str'
2026-05-07T11:03:43,417   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str'
2026-05-07T11:03:43,445   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str'
2026-05-07T11:03:43,457   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str'
2026-05-07T11:03:43,460   adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str'
2026-05-07T11:03:43,499   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str'
2026-05-07T11:03:43,532   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str'
2026-05-07T11:03:43,638   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str'
2026-05-07T11:03:43,644   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str'
2026-05-07T11:03:43,659   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str'
2026-05-07T11:03:43,666   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str'
2026-05-07T11:03:43,758   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str'
2026-05-07T11:03:43,783   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str'
2026-05-07T11:03:43,803   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str'
2026-05-07T11:03:43,894   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str'
2026-05-07T11:03:43,905   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str'
2026-05-07T11:03:44,167   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str'
2026-05-07T11:03:44,284   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str'
2026-05-07T11:03:44,346   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str'
2026-05-07T11:03:44,362   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str'
2026-05-07T11:03:44,370   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str'
2026-05-07T11:03:44,386   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str'
2026-05-07T11:03:44,397   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str'
2026-05-07T11:03:44,405   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str'
2026-05-07T11:03:44,407   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str'
2026-05-07T11:03:44,409   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str'
2026-05-07T11:03:44,410   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str'
2026-05-07T11:03:44,411   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str'
2026-05-07T11:03:44,413   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str'
2026-05-07T11:03:44,426   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str'
2026-05-07T11:03:44,453   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str'
2026-05-07T11:03:44,473   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str'
2026-05-07T11:03:44,479   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str'
2026-05-07T11:03:44,608   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str'
2026-05-07T11:03:44,744   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str'
2026-05-07T11:03:44,753   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str'
2026-05-07T11:03:44,756   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str'
2026-05-07T11:03:44,768   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str'
2026-05-07T11:03:44,793   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str'
2026-05-07T11:03:44,796   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str'
2026-05-07T11:03:44,799   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str'
2026-05-07T11:03:44,802   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str'
2026-05-07T11:03:44,812   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str'
2026-05-07T11:03:45,010   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str'
2026-05-07T11:03:45,031   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str'
2026-05-07T11:03:45,050   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str'
2026-05-07T11:03:45,058   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str'
2026-05-07T11:03:45,067   adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf'
2026-05-07T11:03:45,077   adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf'
2026-05-07T11:03:45,083   adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf'
2026-05-07T11:03:45,109   adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf'
2026-05-07T11:03:45,412   adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf'
2026-05-07T11:03:45,491   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf'
2026-05-07T11:03:45,541   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf'
2026-05-07T11:03:45,548   adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf'
2026-05-07T11:03:45,558   adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf'
2026-05-07T11:03:45,560   adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf'
2026-05-07T11:03:45,562   adding 'htmd/share/membranebuilder/lipids/lipiddb.csv'
2026-05-07T11:03:45,565   adding 'htmd/share/membranebuilder/lipids/chl1/chl1.cif'
2026-05-07T11:03:45,567   adding 'htmd/share/membranebuilder/lipids/dapa/dapa.cif'
2026-05-07T11:03:45,571   adding 'htmd/share/membranebuilder/lipids/dapc/dapc.cif'
2026-05-07T11:03:45,574   adding 'htmd/share/membranebuilder/lipids/dape/dape.cif'
2026-05-07T11:03:45,577   adding 'htmd/share/membranebuilder/lipids/dapg/dapg.cif'
2026-05-07T11:03:45,580   adding 'htmd/share/membranebuilder/lipids/daps/daps.cif'
2026-05-07T11:03:45,582   adding 'htmd/share/membranebuilder/lipids/dlpa/dlpa.cif'
2026-05-07T11:03:45,585   adding 'htmd/share/membranebuilder/lipids/dlpc/dlpc.cif'
2026-05-07T11:03:45,587   adding 'htmd/share/membranebuilder/lipids/dlpe/dlpe.cif'
2026-05-07T11:03:45,590   adding 'htmd/share/membranebuilder/lipids/dlpg/dlpg.cif'
2026-05-07T11:03:45,593   adding 'htmd/share/membranebuilder/lipids/dlps/dlps.cif'
2026-05-07T11:03:45,595   adding 'htmd/share/membranebuilder/lipids/dmpa/dmpa.cif'
2026-05-07T11:03:45,598   adding 'htmd/share/membranebuilder/lipids/dmpc/dmpc.cif'
2026-05-07T11:03:45,600   adding 'htmd/share/membranebuilder/lipids/dmpe/dmpe.cif'
2026-05-07T11:03:45,603   adding 'htmd/share/membranebuilder/lipids/dmpg/dmpg.cif'
2026-05-07T11:03:45,606   adding 'htmd/share/membranebuilder/lipids/dmps/dmps.cif'
2026-05-07T11:03:45,608   adding 'htmd/share/membranebuilder/lipids/dopa/dopa.cif'
2026-05-07T11:03:45,611   adding 'htmd/share/membranebuilder/lipids/dopc/dopc.cif'
2026-05-07T11:03:45,615   adding 'htmd/share/membranebuilder/lipids/dope/dope.cif'
2026-05-07T11:03:45,617   adding 'htmd/share/membranebuilder/lipids/dopg/dopg.cif'
2026-05-07T11:03:45,620   adding 'htmd/share/membranebuilder/lipids/dops/dops.cif'
2026-05-07T11:03:45,623   adding 'htmd/share/membranebuilder/lipids/dppa/dppa.cif'
2026-05-07T11:03:45,626   adding 'htmd/share/membranebuilder/lipids/dppc/dppc.cif'
2026-05-07T11:03:45,629   adding 'htmd/share/membranebuilder/lipids/dppe/dppe.cif'
2026-05-07T11:03:45,632   adding 'htmd/share/membranebuilder/lipids/dppg/dppg.cif'
2026-05-07T11:03:45,635   adding 'htmd/share/membranebuilder/lipids/dpps/dpps.cif'
2026-05-07T11:03:45,637   adding 'htmd/share/membranebuilder/lipids/dspa/dspa.cif'
2026-05-07T11:03:45,640   adding 'htmd/share/membranebuilder/lipids/dspc/dspc.cif'
2026-05-07T11:03:45,644   adding 'htmd/share/membranebuilder/lipids/dspe/dspe.cif'
2026-05-07T11:03:45,647   adding 'htmd/share/membranebuilder/lipids/dspg/dspg.cif'
2026-05-07T11:03:45,650   adding 'htmd/share/membranebuilder/lipids/dsps/dsps.cif'
2026-05-07T11:03:45,653   adding 'htmd/share/membranebuilder/lipids/popa/popa.cif'
2026-05-07T11:03:45,656   adding 'htmd/share/membranebuilder/lipids/popc/popc.cif'
2026-05-07T11:03:45,659   adding 'htmd/share/membranebuilder/lipids/pope/pope.cif'
2026-05-07T11:03:45,662   adding 'htmd/share/membranebuilder/lipids/popg/popg.cif'
2026-05-07T11:03:45,665   adding 'htmd/share/membranebuilder/lipids/pops/pops.cif'
2026-05-07T11:03:45,667   adding 'htmd/share/membranebuilder/lipids/sdpa/sdpa.cif'
2026-05-07T11:03:45,671   adding 'htmd/share/membranebuilder/lipids/sdpc/sdpc.cif'
2026-05-07T11:03:45,674   adding 'htmd/share/membranebuilder/lipids/sdpe/sdpe.cif'
2026-05-07T11:03:45,677   adding 'htmd/share/membranebuilder/lipids/sdpg/sdpg.cif'
2026-05-07T11:03:45,680   adding 'htmd/share/membranebuilder/lipids/sdps/sdps.cif'
2026-05-07T11:03:45,966   adding 'htmd/share/solvate/wat.pdb'
2026-05-07T11:03:45,981   adding 'acellera_htmd-2.7.1.dist-info/METADATA'
2026-05-07T11:03:45,982   adding 'acellera_htmd-2.7.1.dist-info/WHEEL'
2026-05-07T11:03:45,983   adding 'acellera_htmd-2.7.1.dist-info/entry_points.txt'
2026-05-07T11:03:45,984   adding 'acellera_htmd-2.7.1.dist-info/top_level.txt'
2026-05-07T11:03:45,990   adding 'acellera_htmd-2.7.1.dist-info/RECORD'
2026-05-07T11:03:46,046   removing build/bdist.linux-armv7l/wheel
2026-05-07T11:03:46,264   Building wheel for acellera-htmd (pyproject.toml): finished with status 'done'
2026-05-07T11:03:46,357   Created wheel for acellera-htmd: filename=acellera_htmd-2.7.1-py3-none-any.whl size=4396562 sha256=6f36f06960c7426c2cf2b06618e3d8cac0a977c4aa617ddb7751af386ad0ef96
2026-05-07T11:03:46,358   Stored in directory: /tmp/pip-ephem-wheel-cache-65ay_wv4/wheels/b0/db/c6/de6f860cf2d5341c4f87c81fda24ac386ff8af3826909fab90
2026-05-07T11:03:46,384 Successfully built acellera-htmd
2026-05-07T11:03:46,510 Removed build tracker: '/tmp/pip-build-tracker-ynzhiu_c'