2026-05-08T13:04:21,615 Created temporary directory: /tmp/pip-ephem-wheel-cache-gxof0xmb 2026-05-08T13:04:21,617 Created temporary directory: /tmp/pip-build-tracker-zrzro6o0 2026-05-08T13:04:21,617 Initialized build tracking at /tmp/pip-build-tracker-zrzro6o0 2026-05-08T13:04:21,618 Created build tracker: /tmp/pip-build-tracker-zrzro6o0 2026-05-08T13:04:21,618 Entered build tracker: /tmp/pip-build-tracker-zrzro6o0 2026-05-08T13:04:21,619 Created temporary directory: /tmp/pip-wheel-m3gpt9f4 2026-05-08T13:04:21,622 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-08T13:04:21,624 Created temporary directory: /tmp/pip-ephem-wheel-cache-7c6g0aw0 2026-05-08T13:04:21,646 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-08T13:04:21,649 2 location(s) to search for versions of libsonata: 2026-05-08T13:04:21,649 * https://pypi.org/simple/libsonata/ 2026-05-08T13:04:21,649 * https://www.piwheels.org/simple/libsonata/ 2026-05-08T13:04:21,650 Fetching project page and analyzing links: https://pypi.org/simple/libsonata/ 2026-05-08T13:04:21,651 Getting page https://pypi.org/simple/libsonata/ 2026-05-08T13:04:21,652 Found index url https://pypi.org/simple 2026-05-08T13:04:21,929 Fetched page https://pypi.org/simple/libsonata/ as application/vnd.pypi.simple.v1+json 2026-05-08T13:04:22,026 Skipping link: No binaries permitted for libsonata: 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https://files.pythonhosted.org/packages/20/ca/5bcd62c475eb0c40892bf494517ff1400793c43247f473e5f4a89b1e3ab2/libsonata-0.0.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-08T13:04:22,045 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/76/95/8d24395d8b4169a0379535c1494103b59a0dc889685bc17b2da11c9c048a/libsonata-0.0.3-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-05-08T13:04:22,045 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/a5/22/3a61e4853f3b52581c7833105c109f93707ff83f559e593259fadc7d0541/libsonata-0.0.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-05-08T13:04:22,046 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/08/a0/baa1e4ee480d7e3b1f548ff6062a2a6bb2e7e62ea0872e2cc514f6da4f52/libsonata-0.0.3-cp37-cp37m-manylinux1_i686.whl (from 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https://files.pythonhosted.org/packages/56/e0/bce25872b99d131a1b60339e3ef5785b3c15ef958a913c8e1ef0ef78b4ec/libsonata-0.1.34-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,347 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/7d/c5/e20fd55e4806736e689763f8876d4f307f07daf04d2778854f439c74ef8b/libsonata-0.1.34-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,348 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/9b/96/b2d2987134ab678990d3653268b37da2c8c2045244a37a8080773a9b2ee9/libsonata-0.1.34-cp314-cp314-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,349 Found link https://files.pythonhosted.org/packages/67/8f/b32a05fa124a711bb32d80d596392c361dad967254c4efc043f63d07c7b9/libsonata-0.1.34.tar.gz 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2026-05-08T13:04:22,352 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/2d/1b/0d2587deb91e2ec4456d27c165b93aaaeebbfa28da18ab39c99a341720f4/libsonata-0.1.35-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,352 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/95/d5/3d22906cb4b254595974c4d0b671c6536185d9582f944ac159eecb0df2c1/libsonata-0.1.35-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,353 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/a4/0c/24ba6dcc7f30b5ae9e3bd21b49d1699d546288d148201e2be00d17c4e63e/libsonata-0.1.35-cp311-cp311-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,353 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/5a/8f/cffae895d67ebf122f8d88271b6189ded1ed25e7d2c0ba136ee6cb6a6fc5/libsonata-0.1.35-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,354 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/49/1f/286fa6a3b4334b2129a5526de13e195e5fbf0b3de9dfd2820d0a9e658ae8/libsonata-0.1.35-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,354 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/b8/64/79fd8341788478cd9b96a3fdded2538d5a62e6fc315e030a55948d872d05/libsonata-0.1.35-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,355 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/3c/85/42296097836e6737cd1de7eab37369ed5f28b828befb8db67498931c6c4b/libsonata-0.1.35-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,355 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/a5/58/fb139349a03f3960945f002421315162b8b5a08b7da0d856adc5688be4e6/libsonata-0.1.35-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,356 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/a6/7e/b365137f6cde47180a193526b234a14a0df969e797f69c37d8f0171def74/libsonata-0.1.35-cp313-cp313-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,356 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/c1/be/e24db90d60fcd8dc2194c92c290a55dd1446fc6f450d2ca2af10b5ad4406/libsonata-0.1.35-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,357 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/dd/a3/5dbda02deec309abca52933b409a78a9152ef72eb99cddb9af5a5a496bac/libsonata-0.1.35-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,358 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/13/f7/fe57f874a2044aacd5a79a80d910fdba9ef8a81b689518bd0eca61cdd799/libsonata-0.1.35-cp314-cp314-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,359 Found link https://files.pythonhosted.org/packages/3e/9a/4e532b54b5da98c98401d2d987a2bed3912156cd201fe8e826681054c04f/libsonata-0.1.35.tar.gz 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2026-05-08T13:04:22,361 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/fc/a7/b14b7a01699e4757c92631bb28a426cc2ee1a1e58196b981937f87bb47df/libsonata-0.1.36-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,362 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/24/61/17e3cb70dee46e74d738fb6f61829eef5a4893e30e4ee7c364a8b0c1182c/libsonata-0.1.36-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,362 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/aa/a6/dd5d0e645160e62f871307e967961f37fabeed9f9272a464ab1506fc150b/libsonata-0.1.36-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,363 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/3b/8f/199fbf39fba6173a1bb6caa71aa4244e35cc62a8545bc56cfe80592093aa/libsonata-0.1.36-cp311-cp311-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,363 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/b4/98/5a27a230accb7edf69043c248c2aba6f339ac85b9b9f61502ad9f64c04cc/libsonata-0.1.36-cp311-cp311-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,364 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/fe/5f/43c994c90dcf5f6b9b51e282acdc63345c77232ac40dd38e7c19c9a2ecfb/libsonata-0.1.36-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,364 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/64/2d/51774302092a9dfa4a06701771718f1848afe1561b7c4c82faca1581fb2a/libsonata-0.1.36-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,365 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/97/0d/95a4cda2d9b0c235acbd25e89e012ade35838f8711626d5e41957d16a789/libsonata-0.1.36-cp312-cp312-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,366 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/1f/f4/938b8687b87eb5e8bc3344a0fbece55369321ba5bfcd0c5583490ba43af5/libsonata-0.1.36-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,366 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/b3/7d/7ad1afa7571580e2e03de882afc1e60ee8734b9ecb5da25bf2d976b53a15/libsonata-0.1.36-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,367 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/29/79/88bfb43e21a95c3c9183d61a7157d9413742ebf4cba3ec41eb2243eff2b0/libsonata-0.1.36-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,367 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/34/d2/ab199467aa1289558dcdd06e1c8326813179b245dd4ee55b332c80c94346/libsonata-0.1.36-cp313-cp313-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,368 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/06/fa/bf0498965cfa92baa196b95c1b174a0665650f4c7578890b12606b665f40/libsonata-0.1.36-cp313-cp313-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,369 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/41/b6/5dc02d9dc1200626c55408577d0d4258736b6cc12c52d8292dca5824f397/libsonata-0.1.36-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,369 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/11/47/9926439b80d55b7b3ed53f9f1d6e920348b2f07d9dc8697af3aba2502aab/libsonata-0.1.36-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,370 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/f0/22/b1d680f8b61126f4f21f863e1adf7ef5b9923c40acd3605c9be4479a3ed4/libsonata-0.1.36-cp314-cp314-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,370 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/72/b0/60ae69a32aa7d55be809d6bbae3bd804561558ae2dcaf12d539ea29f428f/libsonata-0.1.36-cp314-cp314-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,371 Found link https://files.pythonhosted.org/packages/e9/9c/7724edb2f3436e2ecd1f1d6421876934379026427885add4835e0fe54662/libsonata-0.1.36.tar.gz (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9), version: 0.1.36 2026-05-08T13:04:22,372 Fetching project page and analyzing links: https://www.piwheels.org/simple/libsonata/ 2026-05-08T13:04:22,373 Getting page https://www.piwheels.org/simple/libsonata/ 2026-05-08T13:04:22,374 Found index url https://www.piwheels.org/simple 2026-05-08T13:04:22,550 Fetched page https://www.piwheels.org/simple/libsonata/ as text/html 2026-05-08T13:04:22,600 Skipping link: No binaries permitted for libsonata: https://www.piwheels.org/simple/libsonata/libsonata-0.1.35-cp311-cp311-linux_armv6l.whl#sha256=6968be0db53eb1ff5edd99f02a2f6193c138e0f4d28f96a2fd41e7bcb55d3ccf (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,601 Skipping link: No binaries permitted for libsonata: https://www.piwheels.org/simple/libsonata/libsonata-0.1.35-cp311-cp311-linux_armv7l.whl#sha256=6968be0db53eb1ff5edd99f02a2f6193c138e0f4d28f96a2fd41e7bcb55d3ccf (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,602 Skipping link: No binaries permitted for libsonata: https://www.piwheels.org/simple/libsonata/libsonata-0.1.35-cp313-cp313-linux_armv6l.whl#sha256=5f6483d3ecbebbb252b3091617003b3471f649802dc8d777897e42f109251da6 (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,602 Skipping link: No binaries permitted for libsonata: https://www.piwheels.org/simple/libsonata/libsonata-0.1.35-cp313-cp313-linux_armv7l.whl#sha256=5f6483d3ecbebbb252b3091617003b3471f649802dc8d777897e42f109251da6 (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,603 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.34-cp311-cp311-linux_armv6l.whl#sha256=a1c41064e70910abbc2794085e8a82831462d5adf5db817b9243fc490acbed3b (from https://www.piwheels.org/simple/libsonata/) (requires-python:>=3.9) 2026-05-08T13:04:22,604 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.34-cp311-cp311-linux_armv7l.whl#sha256=a1c41064e70910abbc2794085e8a82831462d5adf5db817b9243fc490acbed3b (from https://www.piwheels.org/simple/libsonata/) 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https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev9-cp39-cp39-linux_armv6l.whl#sha256=b8f05b44ffd1af6207622334fa10d87e8b0a29e12a8f493c125c671908e1d4eb (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,695 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev9-cp39-cp39-linux_armv7l.whl#sha256=b8f05b44ffd1af6207622334fa10d87e8b0a29e12a8f493c125c671908e1d4eb (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,695 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev8-cp34-cp34m-linux_armv6l.whl#sha256=26ff776129f574ee8cc6d4c13d447fa9db8eec49b52141e12d87404bf0d4d236 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,696 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev8-cp34-cp34m-linux_armv7l.whl#sha256=26ff776129f574ee8cc6d4c13d447fa9db8eec49b52141e12d87404bf0d4d236 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,696 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev8-cp37-cp37m-linux_armv6l.whl#sha256=4999170faaf812839988f790cc73e9605304d155e2b0b94b59ccbd4d4ea4e342 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,697 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev8-cp37-cp37m-linux_armv7l.whl#sha256=4999170faaf812839988f790cc73e9605304d155e2b0b94b59ccbd4d4ea4e342 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,698 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev8-cp39-cp39-linux_armv6l.whl#sha256=93ffdb3c2d53ad09dfc4a424b9533f4170e3992145d3dae910463d21c6a9781c (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,698 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev8-cp39-cp39-linux_armv7l.whl#sha256=93ffdb3c2d53ad09dfc4a424b9533f4170e3992145d3dae910463d21c6a9781c (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,699 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp34-cp34m-linux_armv6l.whl#sha256=eb0191c0c85eb15262865a055d297c79be1c9fc86d68f2cd9b0e05fb9b909b0c (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,699 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp34-cp34m-linux_armv7l.whl#sha256=eb0191c0c85eb15262865a055d297c79be1c9fc86d68f2cd9b0e05fb9b909b0c (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,700 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp37-cp37m-linux_armv7l.whl#sha256=23b7d8f937f3d7722ea66ea82193e096565c3093ae2146b2438fa3d9842ea2cb (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,700 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp37-cp37m-linux_armv6l.whl#sha256=23b7d8f937f3d7722ea66ea82193e096565c3093ae2146b2438fa3d9842ea2cb (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,701 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp39-cp39-linux_armv6l.whl#sha256=9314bbe6f274b6e2643b6188fe9c4fd1087093f3a6f4acc9622250afa07f250e (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,702 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp39-cp39-linux_armv7l.whl#sha256=9314bbe6f274b6e2643b6188fe9c4fd1087093f3a6f4acc9622250afa07f250e (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,703 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp39-cp39-linux_armv6l.whl#sha256=6843c79b0b382fe18b24af2b3ae43ce303d5ef0388b2c0583382604d5ce8b81a (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,703 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=6843c79b0b382fe18b24af2b3ae43ce303d5ef0388b2c0583382604d5ce8b81a (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,704 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp34-cp34m-linux_armv6l.whl#sha256=737bf46855f9d666739d5d7be3f4f596cd11367c84d89a65cbb02437e315a667 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,704 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp34-cp34m-linux_armv7l.whl#sha256=737bf46855f9d666739d5d7be3f4f596cd11367c84d89a65cbb02437e315a667 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,705 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp35-cp35m-linux_armv6l.whl#sha256=95faa6c7caaf34fc9fd2e0de722715b7d06b371f553b62bf92443e7d6541aac7 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,706 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp35-cp35m-linux_armv7l.whl#sha256=95faa6c7caaf34fc9fd2e0de722715b7d06b371f553b62bf92443e7d6541aac7 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,706 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp37-cp37m-linux_armv6l.whl#sha256=6bb8c369f4f539bdbc5e096d7ad56ef42ca4a08eeff4274a462f6d14888899c3 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,707 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp37-cp37m-linux_armv7l.whl#sha256=6bb8c369f4f539bdbc5e096d7ad56ef42ca4a08eeff4274a462f6d14888899c3 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,707 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp35-cp35m-linux_armv7l.whl#sha256=203af13c796d6096151043c6656f50f8a26c9b5c634c4085c7b7ced33d0f6704 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,707 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp35-cp35m-linux_armv6l.whl#sha256=203af13c796d6096151043c6656f50f8a26c9b5c634c4085c7b7ced33d0f6704 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,708 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp39-cp39-linux_armv6l.whl#sha256=fc1cc822ef384ad0e88e2719699879097bab54387b9521dc81432910da5d74b6 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,709 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp39-cp39-linux_armv7l.whl#sha256=fc1cc822ef384ad0e88e2719699879097bab54387b9521dc81432910da5d74b6 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,709 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=925b4b49068389e9077eecce0764b703c81b3e7be3fad084659f089d2ac9fbd9 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,710 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=925b4b49068389e9077eecce0764b703c81b3e7be3fad084659f089d2ac9fbd9 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,711 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp34-cp34m-linux_armv7l.whl#sha256=61fc7e05cf8d7d8748546aa9b11044f17bdc5f029ca2fe78e54c36a689ae0b25 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,711 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp34-cp34m-linux_armv6l.whl#sha256=61fc7e05cf8d7d8748546aa9b11044f17bdc5f029ca2fe78e54c36a689ae0b25 (from https://www.piwheels.org/simple/libsonata/) 2026-05-08T13:04:22,712 Skipping link: not a file: https://www.piwheels.org/simple/libsonata/ 2026-05-08T13:04:22,712 Skipping link: not a file: https://pypi.org/simple/libsonata/ 2026-05-08T13:04:22,738 Given no hashes to check 1 links for project 'libsonata': discarding no candidates 2026-05-08T13:04:22,758 Collecting libsonata==0.1.36 2026-05-08T13:04:22,761 Created temporary directory: /tmp/pip-unpack-l58ezabs 2026-05-08T13:04:22,912 Downloading libsonata-0.1.36.tar.gz (1.2 MB) 2026-05-08T13:04:23,769 Added libsonata==0.1.36 from https://files.pythonhosted.org/packages/e9/9c/7724edb2f3436e2ecd1f1d6421876934379026427885add4835e0fe54662/libsonata-0.1.36.tar.gz to build tracker '/tmp/pip-build-tracker-zrzro6o0' 2026-05-08T13:04:23,776 Created temporary directory: /tmp/pip-build-env-r2f4iy_p 2026-05-08T13:04:23,780 Installing build dependencies: started 2026-05-08T13:04:23,781 Running command pip subprocess to install build dependencies 2026-05-08T13:04:24,916 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-08T13:04:25,333 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-08T13:04:25,356 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-08T13:04:26,705 Collecting cmake 2026-05-08T13:04:27,068 Using cached cmake-4.3.2-py3-none-manylinux_2_31_armv7l.whl (26.6 MB) 2026-05-08T13:04:27,959 Collecting oldest-supported-numpy 2026-05-08T13:04:27,978 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.12.21-py3-none-any.whl (4.9 kB) 2026-05-08T13:04:29,412 Collecting setuptools 2026-05-08T13:04:29,495 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-08T13:04:29,869 Collecting setuptools_scm 2026-05-08T13:04:29,886 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-08T13:04:30,117 Collecting wheel 2026-05-08T13:04:30,132 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-08T13:04:31,368 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-08T13:04:31,376 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-08T13:04:31,383 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-08T13:04:31,390 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-08T13:04:31,397 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-08T13:04:32,119 Collecting numpy==1.23.2 2026-05-08T13:04:32,999 Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.2-cp311-cp311-linux_armv7l.whl (12.4 MB) 2026-05-08T13:04:33,412 Collecting vcs-versioning>=1.0.0.dev0 2026-05-08T13:04:33,431 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-08T13:04:33,615 Collecting packaging>=20 2026-05-08T13:04:33,632 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-08T13:04:36,926 Installing collected packages: setuptools, packaging, numpy, cmake, wheel, vcs-versioning, oldest-supported-numpy, setuptools_scm 2026-05-08T13:04:49,179 Creating /tmp/pip-build-env-r2f4iy_p/overlay/local/bin 2026-05-08T13:04:49,182 changing mode of /tmp/pip-build-env-r2f4iy_p/overlay/local/bin/f2py to 755 2026-05-08T13:04:49,184 changing mode of /tmp/pip-build-env-r2f4iy_p/overlay/local/bin/f2py3 to 755 2026-05-08T13:04:49,187 changing mode of /tmp/pip-build-env-r2f4iy_p/overlay/local/bin/f2py3.11 to 755 2026-05-08T13:04:56,791 changing mode of /tmp/pip-build-env-r2f4iy_p/overlay/local/bin/ccmake to 755 2026-05-08T13:04:56,793 changing mode of /tmp/pip-build-env-r2f4iy_p/overlay/local/bin/cmake to 755 2026-05-08T13:04:56,795 changing mode of /tmp/pip-build-env-r2f4iy_p/overlay/local/bin/cpack to 755 2026-05-08T13:04:56,797 changing mode of /tmp/pip-build-env-r2f4iy_p/overlay/local/bin/ctest to 755 2026-05-08T13:04:57,070 changing mode of /tmp/pip-build-env-r2f4iy_p/overlay/local/bin/wheel to 755 2026-05-08T13:04:57,376 changing mode of /tmp/pip-build-env-r2f4iy_p/overlay/local/bin/vcs-versioning to 755 2026-05-08T13:04:57,500 changing mode of /tmp/pip-build-env-r2f4iy_p/overlay/local/bin/setuptools-scm to 755 2026-05-08T13:04:57,566 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2026-05-08T13:04:57,567 scipy 1.17.1 requires numpy<2.7,>=1.26.4, but you have numpy 1.23.2 which is incompatible. 2026-05-08T13:04:57,567 Successfully installed cmake-4.3.2 numpy-1.23.2 oldest-supported-numpy-2023.12.21 packaging-26.2 setuptools-82.0.1 setuptools_scm-10.0.5 vcs-versioning-1.1.1 wheel-0.47.0 2026-05-08T13:04:58,044 Installing build dependencies: finished with status 'done' 2026-05-08T13:04:58,054 Getting requirements to build wheel: started 2026-05-08T13:04:58,055 Running command Getting requirements to build wheel 2026-05-08T13:04:58,816 /tmp/pip-build-env-r2f4iy_p/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:151: UserWarning: version of libsonata already set 2026-05-08T13:04:58,816 warnings.warn(f"version of {self.dist_name} already set") 2026-05-08T13:04:58,845 running egg_info 2026-05-08T13:04:58,855 writing python/libsonata.egg-info/PKG-INFO 2026-05-08T13:04:58,859 writing dependency_links to python/libsonata.egg-info/dependency_links.txt 2026-05-08T13:04:58,861 writing requirements to python/libsonata.egg-info/requires.txt 2026-05-08T13:04:58,862 writing top-level names to python/libsonata.egg-info/top_level.txt 2026-05-08T13:04:58,905 /tmp/pip-build-env-r2f4iy_p/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-08T13:04:58,906 return get_active_overrides().subprocess_timeout 2026-05-08T13:04:58,915 listing git files failed - pretending there aren't any 2026-05-08T13:04:58,920 reading manifest file 'python/libsonata.egg-info/SOURCES.txt' 2026-05-08T13:04:58,975 reading manifest template 'MANIFEST.in' 2026-05-08T13:04:59,057 adding license file 'COPYING' 2026-05-08T13:04:59,058 adding license file 'COPYING.LESSER' 2026-05-08T13:04:59,059 adding license file 'AUTHORS.txt' 2026-05-08T13:04:59,071 writing manifest file 'python/libsonata.egg-info/SOURCES.txt' 2026-05-08T13:04:59,174 Getting requirements to build wheel: finished with status 'done' 2026-05-08T13:04:59,178 Created temporary directory: /tmp/pip-modern-metadata-x61zxcys 2026-05-08T13:04:59,180 Preparing metadata (pyproject.toml): started 2026-05-08T13:04:59,182 Running command Preparing metadata (pyproject.toml) 2026-05-08T13:04:59,861 /tmp/pip-build-env-r2f4iy_p/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:151: UserWarning: version of libsonata already set 2026-05-08T13:04:59,862 warnings.warn(f"version of {self.dist_name} already set") 2026-05-08T13:04:59,895 running dist_info 2026-05-08T13:04:59,911 creating /tmp/pip-modern-metadata-x61zxcys/libsonata.egg-info 2026-05-08T13:04:59,912 writing /tmp/pip-modern-metadata-x61zxcys/libsonata.egg-info/PKG-INFO 2026-05-08T13:04:59,917 writing dependency_links to /tmp/pip-modern-metadata-x61zxcys/libsonata.egg-info/dependency_links.txt 2026-05-08T13:04:59,919 writing requirements to /tmp/pip-modern-metadata-x61zxcys/libsonata.egg-info/requires.txt 2026-05-08T13:04:59,920 writing top-level names to /tmp/pip-modern-metadata-x61zxcys/libsonata.egg-info/top_level.txt 2026-05-08T13:04:59,921 writing manifest file '/tmp/pip-modern-metadata-x61zxcys/libsonata.egg-info/SOURCES.txt' 2026-05-08T13:04:59,960 /tmp/pip-build-env-r2f4iy_p/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-08T13:04:59,961 return get_active_overrides().subprocess_timeout 2026-05-08T13:04:59,967 listing git files failed - pretending there aren't any 2026-05-08T13:04:59,972 reading manifest file '/tmp/pip-modern-metadata-x61zxcys/libsonata.egg-info/SOURCES.txt' 2026-05-08T13:04:59,974 reading manifest template 'MANIFEST.in' 2026-05-08T13:05:00,050 adding license file 'COPYING' 2026-05-08T13:05:00,050 adding license file 'COPYING.LESSER' 2026-05-08T13:05:00,051 adding license file 'AUTHORS.txt' 2026-05-08T13:05:00,059 writing manifest file '/tmp/pip-modern-metadata-x61zxcys/libsonata.egg-info/SOURCES.txt' 2026-05-08T13:05:00,060 creating '/tmp/pip-modern-metadata-x61zxcys/libsonata-0.1.36.dist-info' 2026-05-08T13:05:00,203 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-08T13:05:00,208 Source in /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2 has version 0.1.36, which satisfies requirement libsonata==0.1.36 from https://files.pythonhosted.org/packages/e9/9c/7724edb2f3436e2ecd1f1d6421876934379026427885add4835e0fe54662/libsonata-0.1.36.tar.gz 2026-05-08T13:05:00,209 Removed libsonata==0.1.36 from https://files.pythonhosted.org/packages/e9/9c/7724edb2f3436e2ecd1f1d6421876934379026427885add4835e0fe54662/libsonata-0.1.36.tar.gz from build tracker '/tmp/pip-build-tracker-zrzro6o0' 2026-05-08T13:05:00,216 Created temporary directory: /tmp/pip-unpack-vh6cx8tt 2026-05-08T13:05:00,217 Building wheels for collected packages: libsonata 2026-05-08T13:05:00,221 Created temporary directory: /tmp/pip-wheel-avspxi_w 2026-05-08T13:05:00,222 Destination directory: /tmp/pip-wheel-avspxi_w 2026-05-08T13:05:00,224 Building wheel for libsonata (pyproject.toml): started 2026-05-08T13:05:00,225 Running command Building wheel for libsonata (pyproject.toml) 2026-05-08T13:05:00,877 /tmp/pip-build-env-r2f4iy_p/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:151: UserWarning: version of libsonata already set 2026-05-08T13:05:00,877 warnings.warn(f"version of {self.dist_name} already set") 2026-05-08T13:05:00,910 running bdist_wheel 2026-05-08T13:05:00,934 running build 2026-05-08T13:05:00,935 running build_py 2026-05-08T13:05:00,937 creating build/lib.linux-armv7l-cpython-311/libsonata 2026-05-08T13:05:00,939 copying python/libsonata/__init__.py -> build/lib.linux-armv7l-cpython-311/libsonata 2026-05-08T13:05:00,942 running build_ext 2026-05-08T13:05:01,881 -- The C compiler identification is GNU 12.2.0 2026-05-08T13:05:02,283 -- The CXX compiler identification is GNU 12.2.0 2026-05-08T13:05:02,322 -- Detecting C compiler ABI info 2026-05-08T13:05:02,880 -- Detecting C compiler ABI info - done 2026-05-08T13:05:02,946 -- Check for working C compiler: /usr/bin/cc - skipped 2026-05-08T13:05:02,948 -- Detecting C compile features 2026-05-08T13:05:02,950 -- Detecting C compile features - done 2026-05-08T13:05:03,005 -- Detecting CXX compiler ABI info 2026-05-08T13:05:03,371 -- Detecting CXX compiler ABI info - done 2026-05-08T13:05:03,439 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2026-05-08T13:05:03,441 -- Detecting CXX compile features 2026-05-08T13:05:03,445 -- Detecting CXX compile features - done 2026-05-08T13:05:04,702 -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libpthread.a;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.8") 2026-05-08T13:05:04,726 -- {fmt} version: 11.0.2 2026-05-08T13:05:04,726 -- Build type: Release 2026-05-08T13:05:04,780 -- pybind11 v3.0.1 2026-05-08T13:05:05,628 -- Found Python: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.8") found components: Interpreter Development.Module Development.Embed 2026-05-08T13:05:05,777 Using compatibility mode for Python, set PYBIND11_FINDPYTHON to NEW/OLD to silence this message 2026-05-08T13:05:05,782 -- Performing Test HAS_FLTO_AUTO 2026-05-08T13:05:06,345 -- Performing Test HAS_FLTO_AUTO - Success 2026-05-08T13:05:06,453 -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development.Module 2026-05-08T13:05:06,457 -- Configuring done (4.9s) 2026-05-08T13:05:06,647 -- Generating done (0.2s) 2026-05-08T13:05:06,652 -- Build files have been written to: /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/build/temp.linux-armv7l-cpython-311 2026-05-08T13:05:07,157 [ 5%] Building CXX object CMakeFiles/sonata_static.dir/src/compartment_sets.cpp.o 2026-05-08T13:05:07,162 [ 23%] Building CXX object CMakeFiles/sonata_static.dir/src/edge_index.cpp.o 2026-05-08T13:05:07,163 [ 23%] Building CXX object CMakeFiles/sonata_static.dir/src/common.cpp.o 2026-05-08T13:05:07,164 [ 23%] Building CXX object CMakeFiles/sonata_static.dir/src/config.cpp.o 2026-05-08T13:05:08,320 [ 29%] Building CXX object CMakeFiles/sonata_static.dir/src/edges.cpp.o 2026-05-08T13:05:18,105 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2026-05-08T13:05:18,106 from /usr/include/c++/12/algorithm:61, 2026-05-08T13:05:18,107 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:12, 2026-05-08T13:05:18,108 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../H5DataType.hpp:17, 2026-05-08T13:05:18,109 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:15, 2026-05-08T13:05:18,110 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:13, 2026-05-08T13:05:18,111 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/H5File.hpp:16, 2026-05-08T13:05:18,112 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/hdf5_reader.h:7, 2026-05-08T13:05:18,113 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/population.h:22, 2026-05-08T13:05:18,114 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.h:12, 2026-05-08T13:05:18,115 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.cpp:10: 2026-05-08T13:05:18,116 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:18,117 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:18,118 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:05:18,119 | ^~~~~~~~~~~~~ 2026-05-08T13:05:18,156 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:18,157 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:18,158 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-08T13:05:18,159 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:05:18,160 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:18,240 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:18,241 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:18,242 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:05:18,243 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:05:18,244 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:18,245 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:18,246 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:05:18,247 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:18,408 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-05-08T13:05:18,409 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:18,410 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-05-08T13:05:18,411 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:18,457 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:18,458 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:18,459 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-08T13:05:18,460 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:05:18,461 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:18,531 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:18,532 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:18,533 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:05:18,534 | ^~~~~~~~~~~~~ 2026-05-08T13:05:19,239 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:19,240 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:19,241 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:05:19,242 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:05:19,243 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:19,244 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:19,245 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:05:19,246 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:22,244 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:05:22,245 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/population.h:20: 2026-05-08T13:05:22,246 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:05:22,247 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:05:22,248 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:05:22,249 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:22,380 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:05:22,381 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:05:22,382 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:79:14: 2026-05-08T13:05:22,383 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:22,384 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:05:22,385 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:05:22,386 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:05:22,387 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:22,388 1939 | __comp); 2026-05-08T13:05:22,389 | ~~~~~~~ 2026-05-08T13:05:22,390 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:05:22,391 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:05:22,392 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:05:22,393 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:79:14: 2026-05-08T13:05:22,394 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:22,395 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:05:22,396 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:22,397 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:22,398 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:05:22,399 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:22,400 In file included from /usr/include/c++/12/vector:64: 2026-05-08T13:05:22,401 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:22,402 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:89:18: 2026-05-08T13:05:22,402 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:22,404 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:05:22,405 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:05:22,424 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:22,425 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:99:26: 2026-05-08T13:05:22,426 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:22,427 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:05:22,427 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:05:22,815 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:05:22,816 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:05:22,817 inlined from ‘bbp::sonata::Selection bbp::sonata::edge_index::resolve(const HighFive::Group&, const std::vector&, const bbp::sonata::Hdf5Reader&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.cpp:68:14: 2026-05-08T13:05:22,818 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:22,818 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:05:22,819 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:05:22,821 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:05:22,822 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:22,823 1939 | __comp); 2026-05-08T13:05:22,824 | ~~~~~~~ 2026-05-08T13:05:22,825 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:05:22,826 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:05:22,827 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:05:22,828 inlined from ‘bbp::sonata::Selection bbp::sonata::edge_index::resolve(const HighFive::Group&, const std::vector&, const bbp::sonata::Hdf5Reader&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.cpp:68:14: 2026-05-08T13:05:22,829 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:22,830 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:05:22,832 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:22,832 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:22,833 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:05:22,834 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:23,140 In file included from /usr/include/c++/12/algorithm:61, 2026-05-08T13:05:23,141 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:12, 2026-05-08T13:05:23,142 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../H5DataType.hpp:17, 2026-05-08T13:05:23,143 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:15, 2026-05-08T13:05:23,144 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:13, 2026-05-08T13:05:23,145 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/H5File.hpp:16, 2026-05-08T13:05:23,146 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/hdf5_reader.h:7, 2026-05-08T13:05:23,146 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/population.h:22, 2026-05-08T13:05:23,148 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.h:12, 2026-05-08T13:05:23,149 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edges.cpp:10: 2026-05-08T13:05:23,150 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-05-08T13:05:23,151 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:23,152 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-05-08T13:05:23,153 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:23,284 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:23,285 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:23,286 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-08T13:05:23,287 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:05:23,288 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:23,297 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:05:23,298 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:05:23,300 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:05:23,301 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:23,355 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-05-08T13:05:23,356 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:23,357 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:23,357 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:05:23,358 | ^~~~~~~~~~~~~ 2026-05-08T13:05:25,689 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:25,690 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:05:25,691 inlined from ‘std::unordered_map > > bbp::sonata::edge_index::{anonymous}::_groupNodeRanges(const std::vector&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.cpp:104:41, 2026-05-08T13:05:25,692 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.cpp:137:49: 2026-05-08T13:05:25,693 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:25,694 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:05:25,695 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:25,696 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:25,697 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:05:25,698 inlined from ‘std::unordered_map > > bbp::sonata::edge_index::{anonymous}::_groupNodeRanges(const std::vector&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.cpp:110:33, 2026-05-08T13:05:25,699 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.cpp:137:49: 2026-05-08T13:05:25,700 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:25,701 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:05:25,702 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:25,704 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:25,705 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:05:25,706 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.cpp:156:35: 2026-05-08T13:05:25,707 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:25,708 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:05:25,709 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:25,710 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:25,711 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:05:25,712 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.cpp:159:35: 2026-05-08T13:05:25,713 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:25,714 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:05:25,715 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:25,716 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:25,717 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:05:25,724 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2026-05-08T13:05:25,725 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:405:18, 2026-05-08T13:05:25,726 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-05-08T13:05:25,727 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = true; _II = array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-05-08T13:05:25,728 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-05-08T13:05:25,729 inlined from ‘_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:652:38, 2026-05-08T13:05:25,730 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edge_index.cpp:161:22: 2026-05-08T13:05:25,731 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:25,732 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:05:25,733 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:26,337 [ 35%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o 2026-05-08T13:05:28,076 [ 41%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_reader.cpp.o 2026-05-08T13:05:28,598 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:05:28,599 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/population.h:20: 2026-05-08T13:05:28,600 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:05:28,601 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:05:28,602 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:05:28,603 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:29,679 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-05-08T13:05:29,680 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-08T13:05:29,748 In file included from /usr/include/c++/12/vector:64: 2026-05-08T13:05:29,750 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:05:29,751 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-05-08T13:05:29,752 inlined from ‘_OutputIterator std::__set_intersection(_InputIterator1, _InputIterator1, _InputIterator2, _InputIterator2, _OutputIterator, _Compare) [with _InputIterator1 = __gnu_cxx::__normal_iterator >; _InputIterator2 = __gnu_cxx::__normal_iterator >; _OutputIterator = back_insert_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:5224:16, 2026-05-08T13:05:29,753 inlined from ‘_OIter std::set_intersection(_IIter1, _IIter1, _IIter2, _IIter2, _OIter) [with _IIter1 = __gnu_cxx::__normal_iterator >; _IIter2 = __gnu_cxx::__normal_iterator >; _OIter = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:5274:48, 2026-05-08T13:05:29,754 inlined from ‘bbp::sonata::Selection bbp::sonata::EdgePopulation::connectingEdges(const std::vector&, const std::vector&) const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/edges.cpp:99:21: 2026-05-08T13:05:29,754 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:29,755 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:05:29,756 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:05:31,855 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2026-05-08T13:05:31,856 from /usr/include/c++/12/algorithm:61, 2026-05-08T13:05:31,857 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/../extlib/filesystem.hpp:192, 2026-05-08T13:05:31,857 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:1: 2026-05-08T13:05:31,858 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:31,859 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:31,860 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:05:31,861 | ^~~~~~~~~~~~~ 2026-05-08T13:05:31,916 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:31,917 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:31,918 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-08T13:05:31,919 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:05:31,920 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:32,077 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:32,078 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:32,079 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:05:32,079 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:05:32,080 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:32,081 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:32,082 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:05:32,083 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:36,269 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:05:36,270 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/../extlib/filesystem.hpp:207: 2026-05-08T13:05:36,271 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {bbp::sonata::CompartmentLocation}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’: 2026-05-08T13:05:36,272 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-08T13:05:36,273 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:05:36,274 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:36,336 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-05-08T13:05:36,337 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-08T13:05:36,430 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const bbp::sonata::CompartmentLocation&}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’: 2026-05-08T13:05:36,431 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-08T13:05:36,560 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const bbp::sonata::CompartmentLocation&}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’, 2026-05-08T13:05:36,560 inlined from ‘std::unique_ptr bbp::sonata::detail::CompartmentSet::filter(const bbp::sonata::Selection&) const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:255:38, 2026-05-08T13:05:36,561 inlined from ‘bbp::sonata::CompartmentSet bbp::sonata::CompartmentSet::filter(const bbp::sonata::Selection&) const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:481:40: 2026-05-08T13:05:36,562 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:36,563 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:05:36,564 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:37,720 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:05:37,721 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:05:37,722 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:05:37,723 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:37,773 In file included from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/hdf5_reader.h:6, 2026-05-08T13:05:37,774 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/population.h:22, 2026-05-08T13:05:37,775 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:18, 2026-05-08T13:05:37,776 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:3: 2026-05-08T13:05:37,777 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’: 2026-05-08T13:05:37,778 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:37,779 65 | Selection Selection::fromValues(Iterator first, Iterator last) { 2026-05-08T13:05:37,780 | ^~~~~~~~~ 2026-05-08T13:05:37,781 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:37,782 In file included from /usr/include/c++/12/vector:64: 2026-05-08T13:05:37,782 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:37,783 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:75:33: 2026-05-08T13:05:37,784 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:37,785 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:05:37,786 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:05:37,787 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:37,788 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:84:25: 2026-05-08T13:05:37,789 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:37,790 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:05:37,791 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:05:38,336 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:38,337 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:38,338 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:05:38,339 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:05:38,340 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:38,341 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:38,342 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:05:38,342 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:38,541 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:05:38,542 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:05:38,543 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:79:14: 2026-05-08T13:05:38,544 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:38,545 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:05:38,546 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:05:38,547 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:05:38,548 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:38,549 1939 | __comp); 2026-05-08T13:05:38,550 | ~~~~~~~ 2026-05-08T13:05:38,551 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:05:38,553 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:05:38,554 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:05:38,555 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:79:14: 2026-05-08T13:05:38,555 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:38,556 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:05:38,557 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:38,558 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:38,559 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:05:38,560 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:38,561 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:38,561 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:89:18: 2026-05-08T13:05:38,562 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:38,563 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:05:38,564 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:05:38,565 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:38,566 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:99:26: 2026-05-08T13:05:38,567 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:38,568 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:05:38,569 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:05:40,854 In file included from /usr/include/c++/12/set:60, 2026-05-08T13:05:40,855 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:14: 2026-05-08T13:05:40,856 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-08T13:05:40,857 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:05:40,858 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-05-08T13:05:40,859 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:40,931 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-08T13:05:40,932 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:05:40,933 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-05-08T13:05:40,934 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:40,993 In file included from /usr/include/c++/12/map:61, 2026-05-08T13:05:40,994 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:61, 2026-05-08T13:05:40,994 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:19: 2026-05-08T13:05:40,995 /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-08T13:05:40,996 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:05:40,997 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:05:40,998 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:40,999 512 | std::tuple(__k), 2026-05-08T13:05:41,000 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:41,001 513 | std::tuple<>()); 2026-05-08T13:05:41,002 | ~~~~~~~~~~~~~~~ 2026-05-08T13:05:41,056 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-08T13:05:41,057 inlined from ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5599:76: 2026-05-08T13:05:41,058 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:05:41,059 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:05:41,060 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:41,060 512 | std::tuple(__k), 2026-05-08T13:05:41,061 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:41,063 513 | std::tuple<>()); 2026-05-08T13:05:41,064 | ~~~~~~~~~~~~~~~ 2026-05-08T13:05:43,218 In file included from /usr/include/c++/12/algorithm:61, 2026-05-08T13:05:43,219 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:12, 2026-05-08T13:05:43,220 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../H5DataType.hpp:17, 2026-05-08T13:05:43,221 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:15, 2026-05-08T13:05:43,222 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:13, 2026-05-08T13:05:43,223 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/H5File.hpp:16, 2026-05-08T13:05:43,224 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/hdf5_reader.h:7, 2026-05-08T13:05:43,225 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/hdf5_reader.cpp:1: 2026-05-08T13:05:43,226 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-05-08T13:05:43,227 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:43,228 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-05-08T13:05:43,229 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:43,269 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:43,270 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:43,271 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-08T13:05:43,272 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:05:43,273 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:43,341 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-05-08T13:05:43,342 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:43,343 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:43,344 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:05:43,345 | ^~~~~~~~~~~~~ 2026-05-08T13:05:44,080 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:05:44,081 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:44,082 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:05:44,084 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:05:44,085 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:44,086 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:44,087 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:05:44,088 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:45,280 [ 47%] Building CXX object CMakeFiles/sonata_static.dir/src/node_sets.cpp.o 2026-05-08T13:05:46,597 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:05:46,598 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:218:33: 2026-05-08T13:05:46,599 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:46,600 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:05:46,601 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:05:46,602 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:05:46,602 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:05:46,603 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:221:13: 2026-05-08T13:05:46,604 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:46,605 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:05:46,606 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:05:46,607 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:05:46,608 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:46,609 1939 | __comp); 2026-05-08T13:05:46,610 | ~~~~~~~ 2026-05-08T13:05:46,611 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:05:46,612 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:05:46,613 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:05:46,615 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:221:13: 2026-05-08T13:05:46,616 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:46,617 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:05:46,618 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:46,619 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:46,620 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:05:46,621 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:46,622 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp: In member function ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’: 2026-05-08T13:05:46,623 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:222:66: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:46,624 222 | return Selection::fromValues(result.begin(), result.end()); 2026-05-08T13:05:46,625 | ^ 2026-05-08T13:05:46,734 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:05:46,735 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:05:46,736 175 | vector<_Tp, _Alloc>:: 2026-05-08T13:05:46,737 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:46,789 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:05:46,790 inlined from ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20568:66: 2026-05-08T13:05:46,791 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:05:46,792 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2026-05-08T13:05:46,793 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:46,997 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:05:46,998 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:05:46,999 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:05:47,000 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:47,124 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:05:47,125 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:05:47,126 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5423:41: 2026-05-08T13:05:47,127 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:05:47,128 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:05:47,129 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:47,208 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:05:47,209 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:05:47,210 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5397:41: 2026-05-08T13:05:47,211 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:05:47,212 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:05:47,213 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:47,298 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:05:47,299 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:05:47,301 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:05:47,301 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:48,189 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:05:48,190 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/hdf5_reader.h:4: 2026-05-08T13:05:48,191 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:05:48,192 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:05:48,193 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:05:48,194 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:48,335 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:05:48,336 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:05:48,337 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:79:14: 2026-05-08T13:05:48,338 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:48,339 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:05:48,339 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:05:48,340 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:05:48,341 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:48,342 1939 | __comp); 2026-05-08T13:05:48,343 | ~~~~~~~ 2026-05-08T13:05:48,344 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:05:48,345 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:05:48,346 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:05:48,347 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:79:14: 2026-05-08T13:05:48,347 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:48,349 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:05:48,349 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:48,350 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:48,351 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:05:48,352 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:05:48,353 In file included from /usr/include/c++/12/vector:64: 2026-05-08T13:05:48,355 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:48,356 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:89:18: 2026-05-08T13:05:48,357 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:48,358 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:05:48,358 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:05:48,359 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:05:48,360 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:99:26: 2026-05-08T13:05:48,361 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:05:48,363 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:05:48,363 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:05:59,128 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bbp::sonata::CompartmentLocation}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’, 2026-05-08T13:05:59,129 inlined from ‘bbp::sonata::detail::CompartmentSet::CompartmentSet(const nlohmann::json&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:154:48: 2026-05-08T13:05:59,130 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:05:59,131 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:05:59,132 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:02,676 [ 52%] Building CXX object CMakeFiles/sonata_static.dir/src/nodes.cpp.o 2026-05-08T13:06:03,390 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-08T13:06:03,391 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](const typename object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20085:46, 2026-05-08T13:06:03,392 inlined from ‘nlohmann::json bbp::sonata::detail::CompartmentSets::to_json() const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:350:26, 2026-05-08T13:06:03,393 inlined from ‘std::string bbp::sonata::CompartmentSets::toJSON() const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/compartment_sets.cpp:564:26: 2026-05-08T13:06:03,394 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:03,395 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:06:03,395 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:03,396 512 | std::tuple(__k), 2026-05-08T13:06:03,397 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:03,398 513 | std::tuple<>()); 2026-05-08T13:06:03,398 | ~~~~~~~~~~~~~~~ 2026-05-08T13:06:03,399 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:04,645 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:06:04,646 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:06:04,647 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::string(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5385:21, 2026-05-08T13:06:04,648 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10428:29: 2026-05-08T13:06:04,649 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:06:04,651 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:06:04,652 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:07,461 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:06:07,462 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:06:07,463 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::string(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5385:21, 2026-05-08T13:06:07,464 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::input_stream_adapter]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10428:29: 2026-05-08T13:06:07,465 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:06:07,466 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:06:07,467 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:09,135 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:06:09,136 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/config.h:17, 2026-05-08T13:06:09,137 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/config.cpp:12: 2026-05-08T13:06:09,138 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::EField}; _Tp = bbp::sonata::SimulationConfig::EField; _Alloc = std::allocator]’: 2026-05-08T13:06:09,139 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-08T13:06:09,140 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:09,142 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:09,308 [ 58%] Building CXX object CMakeFiles/sonata_static.dir/src/population.cpp.o 2026-05-08T13:06:11,417 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::ConnectionOverride}; _Tp = bbp::sonata::SimulationConfig::ConnectionOverride; _Alloc = std::allocator]’: 2026-05-08T13:06:11,418 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-08T13:06:19,517 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:06:19,518 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/../extlib/filesystem.hpp:207, 2026-05-08T13:06:19,519 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/node_sets.cpp:8: 2026-05-08T13:06:19,521 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: 2026-05-08T13:06:19,521 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:06:19,523 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:19,524 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:21,230 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:06:21,231 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:06:21,288 In file included from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/hdf5_reader.h:6, 2026-05-08T13:06:21,289 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/population.h:22, 2026-05-08T13:06:21,290 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:18, 2026-05-08T13:06:21,290 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/node_sets.cpp:13: 2026-05-08T13:06:21,291 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’: 2026-05-08T13:06:21,292 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:21,293 65 | Selection Selection::fromValues(Iterator first, Iterator last) { 2026-05-08T13:06:21,294 | ^~~~~~~~~ 2026-05-08T13:06:21,295 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:21,297 In file included from /usr/include/c++/12/vector:64: 2026-05-08T13:06:21,298 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:06:21,299 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:75:33: 2026-05-08T13:06:21,300 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:21,301 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:21,302 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:21,303 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:06:21,304 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:84:25: 2026-05-08T13:06:21,305 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:21,306 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:21,307 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:21,348 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/node_sets.cpp: In member function ‘virtual bbp::sonata::Selection bbp::sonata::detail::NodeSetBasicNodeIds::materialize(const bbp::sonata::detail::NodeSets&, const bbp::sonata::NodePopulation&) const’: 2026-05-08T13:06:21,349 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/node_sets.cpp:235:54: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:21,350 235 | return np.selectAll() & Selection::fromValues(values_.begin(), values_.end()); 2026-05-08T13:06:21,351 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:25,196 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-05-08T13:06:25,198 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-08T13:06:25,198 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:25,199 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:28,597 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:06:28,598 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:28,599 175 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:28,600 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:28,657 In file included from /usr/include/c++/12/vector:64: 2026-05-08T13:06:28,658 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:06:28,659 inlined from ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20568:66: 2026-05-08T13:06:28,660 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:06:28,661 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2026-05-08T13:06:28,663 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:28,853 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:06:28,854 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:28,855 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:28,856 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:28,952 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:06:28,953 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:29,002 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:06:29,003 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:29,054 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:06:29,055 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:31,588 In file included from /usr/include/c++/12/set:60, 2026-05-08T13:06:31,588 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/config.h:14: 2026-05-08T13:06:31,589 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-08T13:06:31,590 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:31,591 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-05-08T13:06:31,592 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:31,672 In file included from /usr/include/c++/12/regex:54, 2026-05-08T13:06:31,672 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/config.cpp:15: 2026-05-08T13:06:31,673 /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-08T13:06:31,674 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:31,675 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:06:31,676 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:31,677 512 | std::tuple(__k), 2026-05-08T13:06:31,678 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:31,678 513 | std::tuple<>()); 2026-05-08T13:06:31,679 | ~~~~~~~~~~~~~~~ 2026-05-08T13:06:31,707 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2026-05-08T13:06:31,708 from /usr/include/c++/12/algorithm:61, 2026-05-08T13:06:31,709 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:12, 2026-05-08T13:06:31,710 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../H5DataType.hpp:17, 2026-05-08T13:06:31,711 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:15, 2026-05-08T13:06:31,712 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:13, 2026-05-08T13:06:31,713 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/H5File.hpp:16, 2026-05-08T13:06:31,714 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/hdf5_reader.h:7, 2026-05-08T13:06:31,715 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/population.h:22, 2026-05-08T13:06:31,716 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.hpp:14, 2026-05-08T13:06:31,717 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:10: 2026-05-08T13:06:31,718 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:06:31,719 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:31,720 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:06:31,721 | ^~~~~~~~~~~~~ 2026-05-08T13:06:31,750 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-08T13:06:31,751 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](const typename object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20085:46: 2026-05-08T13:06:31,752 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:31,753 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:06:31,754 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:31,755 512 | std::tuple(__k), 2026-05-08T13:06:31,756 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:31,757 513 | std::tuple<>()); 2026-05-08T13:06:31,758 | ~~~~~~~~~~~~~~~ 2026-05-08T13:06:31,769 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:06:31,770 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:32,114 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-08T13:06:32,115 inlined from ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5599:76: 2026-05-08T13:06:32,116 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:32,117 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:06:32,118 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,119 512 | std::tuple(__k), 2026-05-08T13:06:32,119 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,120 513 | std::tuple<>()); 2026-05-08T13:06:32,121 | ~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,176 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:06:32,177 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:32,178 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-08T13:06:32,178 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,179 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:32,209 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:06:32,210 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:32,211 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:32,465 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’: 2026-05-08T13:06:32,466 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:32,467 175 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:32,468 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,534 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-08T13:06:32,535 inlined from ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = nlohmann::ordered_map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20568:66: 2026-05-08T13:06:32,536 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:06:32,537 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2026-05-08T13:06:32,538 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,703 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:06:32,704 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:32,705 175 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:32,706 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,728 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’: 2026-05-08T13:06:32,729 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:32,730 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:32,731 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,757 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:06:32,758 inlined from ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20568:66: 2026-05-08T13:06:32,760 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:06:32,761 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2026-05-08T13:06:32,761 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,826 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’: 2026-05-08T13:06:32,827 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:32,870 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:06:32,871 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:32,872 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:06:32,873 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,874 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:32,875 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:32,876 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:06:32,877 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,878 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’: 2026-05-08T13:06:32,879 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:32,926 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’: 2026-05-08T13:06:32,927 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:32,935 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:06:32,936 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:32,937 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:32,938 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,970 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:06:32,971 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:32,972 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:06:32,973 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:06:32,974 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:32,975 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:32,975 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:06:32,976 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:33,033 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:06:33,034 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:06:33,035 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5397:41: 2026-05-08T13:06:33,036 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:06:33,037 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:06:33,038 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:33,110 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:06:33,111 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:06:33,112 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5423:41: 2026-05-08T13:06:33,113 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:06:33,114 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:06:33,115 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:33,183 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:06:33,184 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:33,185 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:33,186 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:33,233 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:06:33,234 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58: 2026-05-08T13:06:33,235 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:06:33,236 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:06:33,237 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:33,832 In file included from /usr/include/c++/12/algorithm:61, 2026-05-08T13:06:33,833 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:10: 2026-05-08T13:06:33,834 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-05-08T13:06:33,835 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:33,836 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-05-08T13:06:33,837 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:34,704 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:06:34,705 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:34,706 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-08T13:06:34,707 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:06:34,708 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:34,775 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-05-08T13:06:34,776 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:06:34,777 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:34,778 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:06:34,779 | ^~~~~~~~~~~~~ 2026-05-08T13:06:38,599 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:06:38,600 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/population.h:20: 2026-05-08T13:06:38,601 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-05-08T13:06:38,602 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-08T13:06:38,603 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:38,604 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:38,875 In file included from /usr/include/c++/12/vector:64: 2026-05-08T13:06:38,875 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:38,877 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned int; UnaryPredicate = {anonymous}::_filterStringAttribute >(const std::string&, const std::vector >&) const:: >(const bbp::sonata::NodePopulation&, std::string, bbp::sonata::NodePopulation::matchAttributeValues >(const std::string&, const std::vector >&) const::)::]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:38,878 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_filterStringAttribute(const bbp::sonata::NodePopulation&, std::string, UnaryPredicate) [with UnaryPredicate = bbp::sonata::NodePopulation::matchAttributeValues >(const std::string&, const std::vector >&) const::]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:84:10, 2026-05-08T13:06:38,879 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = std::__cxx11::basic_string]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:147:57: 2026-05-08T13:06:38,880 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:38,881 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:38,882 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:39,365 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:06:39,366 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:16, 2026-05-08T13:06:39,368 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:14: 2026-05-08T13:06:39,369 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:06:39,370 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:06:39,371 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:39,371 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:39,615 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-05-08T13:06:39,616 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-08T13:06:39,676 In file included from /usr/include/c++/12/vector:64: 2026-05-08T13:06:39,676 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:39,677 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = std::__cxx11::basic_string; UnaryPredicate = std::function)>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26: 2026-05-08T13:06:39,679 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:39,679 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:39,680 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:40,131 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::ConnectionOverride}; _Tp = bbp::sonata::SimulationConfig::ConnectionOverride; _Alloc = std::allocator]’, 2026-05-08T13:06:40,132 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = bbp::sonata::SimulationConfig::ConnectionOverride; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:06:40,132 inlined from ‘std::vector bbp::sonata::SimulationConfig::Parser::parseConnectionOverrides() const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/config.cpp:1550:29: 2026-05-08T13:06:40,134 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:40,135 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:06:40,136 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:45,309 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’, 2026-05-08T13:06:45,311 inlined from ‘bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/node_sets.cpp:504:36: 2026-05-08T13:06:45,312 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:45,313 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:06:45,314 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:45,315 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:45,316 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:06:45,317 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2026-05-08T13:06:45,318 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator >; _UnaryOperation = bbp::sonata::detail::_dispatch_node(const std::string&, const json&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12, 2026-05-08T13:06:45,319 inlined from ‘bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/node_sets.cpp:509:31: 2026-05-08T13:06:45,320 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:45,321 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:06:45,322 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:47,902 In file included from /usr/include/c++/12/map:60, 2026-05-08T13:06:47,902 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:61, 2026-05-08T13:06:47,903 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/node_sets.cpp:10: 2026-05-08T13:06:47,904 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-08T13:06:47,905 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:47,906 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-05-08T13:06:47,908 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:47,986 In file included from /usr/include/c++/12/map:61: 2026-05-08T13:06:47,987 /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-08T13:06:47,988 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:47,989 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:06:47,990 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:47,991 512 | std::tuple(__k), 2026-05-08T13:06:47,992 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:47,993 513 | std::tuple<>()); 2026-05-08T13:06:47,994 | ~~~~~~~~~~~~~~~ 2026-05-08T13:06:48,050 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-08T13:06:48,051 inlined from ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5599:76: 2026-05-08T13:06:48,052 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:48,053 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:06:48,054 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:48,055 512 | std::tuple(__k), 2026-05-08T13:06:48,056 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:48,057 513 | std::tuple<>()); 2026-05-08T13:06:48,058 | ~~~~~~~~~~~~~~~ 2026-05-08T13:06:48,195 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::EField}; _Tp = bbp::sonata::SimulationConfig::EField; _Alloc = std::allocator]’, 2026-05-08T13:06:48,196 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = bbp::sonata::SimulationConfig::EField; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:06:48,197 inlined from ‘void bbp::sonata::{anonymous}::parseInputsEFields(const nlohmann::json&, const std::string&, std::vector&, double)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/config.cpp:445:22: 2026-05-08T13:06:48,199 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:48,200 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:06:48,201 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:49,277 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:06:49,277 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:49,278 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:06:49,279 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:06:49,280 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:49,281 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:49,282 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:06:49,283 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:49,478 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:06:49,479 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:06:49,480 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:79:14: 2026-05-08T13:06:49,481 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:49,482 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:06:49,483 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:06:49,484 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:06:49,485 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:49,486 1939 | __comp); 2026-05-08T13:06:49,487 | ~~~~~~~ 2026-05-08T13:06:49,488 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:06:49,489 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:06:49,491 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:06:49,492 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:79:14: 2026-05-08T13:06:49,492 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:49,493 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:06:49,494 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:49,495 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:49,495 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:06:49,496 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:49,497 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:06:49,499 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:89:18: 2026-05-08T13:06:49,500 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:49,501 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:49,502 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:49,503 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:06:49,504 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:99:26: 2026-05-08T13:06:49,505 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:06:49,506 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:49,506 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:54,012 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:06:54,013 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:06:54,014 523 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:54,015 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:54,314 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:06:54,315 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20004:38, 2026-05-08T13:06:54,315 inlined from ‘BasicJsonType& nlohmann::json_pointer::get_and_create(BasicJsonType&) const [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:11949:53, 2026-05-08T13:06:54,316 inlined from ‘static BasicJsonType nlohmann::json_pointer::unflatten(const BasicJsonType&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:12468:55: 2026-05-08T13:06:54,318 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:06:54,319 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2026-05-08T13:06:54,320 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:54,322 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-08T13:06:54,323 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](const typename object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20085:46, 2026-05-08T13:06:54,325 inlined from ‘BasicJsonType& nlohmann::json_pointer::get_and_create(BasicJsonType&) const [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:11954:53, 2026-05-08T13:06:54,326 inlined from ‘static BasicJsonType nlohmann::json_pointer::unflatten(const BasicJsonType&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:12468:55: 2026-05-08T13:06:54,327 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:54,328 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:06:54,329 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:54,330 512 | std::tuple(__k), 2026-05-08T13:06:54,331 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:54,332 513 | std::tuple<>()); 2026-05-08T13:06:54,332 | ~~~~~~~~~~~~~~~ 2026-05-08T13:06:54,333 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-08T13:06:54,334 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](const typename object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20085:46, 2026-05-08T13:06:54,335 inlined from ‘BasicJsonType& nlohmann::json_pointer::get_and_create(BasicJsonType&) const [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:11962:49, 2026-05-08T13:06:54,336 inlined from ‘static BasicJsonType nlohmann::json_pointer::unflatten(const BasicJsonType&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:12468:55: 2026-05-08T13:06:54,337 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:06:54,338 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:06:54,339 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:54,340 512 | std::tuple(__k), 2026-05-08T13:06:54,341 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:54,342 513 | std::tuple<>()); 2026-05-08T13:06:54,342 | ~~~~~~~~~~~~~~~ 2026-05-08T13:06:54,343 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:06:54,344 inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20004:38, 2026-05-08T13:06:54,345 inlined from ‘BasicJsonType& nlohmann::json_pointer::get_and_create(BasicJsonType&) const [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:11969:49, 2026-05-08T13:06:54,346 inlined from ‘static BasicJsonType nlohmann::json_pointer::unflatten(const BasicJsonType&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:12468:55: 2026-05-08T13:06:54,347 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:06:54,348 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2026-05-08T13:06:54,349 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:54,909 [ 64%] Building CXX object CMakeFiles/sonata_static.dir/src/report_reader.cpp.o 2026-05-08T13:06:56,533 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:06:56,534 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:06:56,535 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:37:18, 2026-05-08T13:06:56,536 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:122:65: 2026-05-08T13:06:56,537 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:56,539 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:06:56,540 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:06:56,541 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:06:56,542 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:56,543 1939 | __comp); 2026-05-08T13:06:56,544 | ~~~~~~~ 2026-05-08T13:06:56,545 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:06:56,545 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:06:56,547 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:06:56,548 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:37:18, 2026-05-08T13:06:56,549 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:122:65: 2026-05-08T13:06:56,550 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:56,552 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:06:56,553 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:56,554 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:56,555 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:06:56,556 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:56,789 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:06:56,790 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:06:56,791 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:37:18, 2026-05-08T13:06:56,792 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:122:65: 2026-05-08T13:06:56,793 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:56,794 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:06:56,795 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:06:56,796 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:06:56,797 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:56,798 1939 | __comp); 2026-05-08T13:06:56,799 | ~~~~~~~ 2026-05-08T13:06:56,800 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:06:56,800 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:06:56,801 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:06:56,802 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:37:18, 2026-05-08T13:06:56,803 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:122:65: 2026-05-08T13:06:56,804 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:56,805 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:06:56,806 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:56,807 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:56,808 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:06:56,809 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:58,951 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:58,952 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = float; UnaryPredicate = std::function]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:58,953 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = float]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:228:46: 2026-05-08T13:06:58,954 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:58,955 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:58,956 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:59,034 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:59,035 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = double; UnaryPredicate = std::function]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:59,036 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = double]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:228:46: 2026-05-08T13:06:59,037 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:59,038 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:59,039 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:59,122 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:59,123 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = signed char; UnaryPredicate = std::function]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:59,124 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = signed char]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:228:46: 2026-05-08T13:06:59,125 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:59,127 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:59,128 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:59,205 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:59,206 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned char; UnaryPredicate = std::function]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:59,207 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = unsigned char]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:228:46: 2026-05-08T13:06:59,209 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:59,210 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:59,211 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:59,291 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:59,292 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = short int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:59,293 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = short int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:228:46: 2026-05-08T13:06:59,294 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:59,295 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:59,296 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:59,340 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2026-05-08T13:06:59,341 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:06:59,342 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:06:59,343 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:59,377 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:59,378 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = short unsigned int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:59,379 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = short unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:228:46: 2026-05-08T13:06:59,380 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:59,381 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:59,382 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:59,462 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’, 2026-05-08T13:06:59,464 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2026-05-08T13:06:59,465 inlined from ‘std::insert_iterator<_Container>& std::insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:973:26, 2026-05-08T13:06:59,466 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = nlohmann::detail::iter_impl >; _OIter = insert_iterator > >; _UnaryOperation = nlohmann::detail::from_json_array_impl, std::vector > >(const nlohmann::basic_json<>&, std::vector >&, priority_tag<1>)::&)>]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12, 2026-05-08T13:06:59,467 inlined from ‘decltype (((arr.reserve(declval()), j.get()), void())) nlohmann::detail::from_json_array_impl(const BasicJsonType&, ConstructibleArrayType&, priority_tag<1>) [with BasicJsonType = nlohmann::basic_json<>; ConstructibleArrayType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:3601:19, 2026-05-08T13:06:59,468 inlined from ‘decltype (((nlohmann::detail::from_json_array_impl(j, arr, (nlohmann::detail::priority_tag<3>)(())), j.get()), void())) nlohmann::detail::from_json(const BasicJsonType&, ConstructibleArrayType&) [with BasicJsonType = nlohmann::basic_json<>; ConstructibleArrayType = std::vector >; typename std::enable_if<((((is_constructible_array_type::value && (! is_constructible_object_type::value)) && (! is_constructible_string_type::value)) && (! std::is_same::value)) && (! is_basic_json::value)), int>::type = 0]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:3648:25: 2026-05-08T13:06:59,469 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:06:59,470 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2026-05-08T13:06:59,471 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:06:59,472 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:59,473 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:59,474 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:228:46: 2026-05-08T13:06:59,475 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:59,476 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:59,477 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:59,550 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:59,551 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:59,552 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:228:46: 2026-05-08T13:06:59,553 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:59,554 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:59,555 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:59,638 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:59,639 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = long long int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:59,641 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = long long int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:228:46: 2026-05-08T13:06:59,642 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:59,643 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:59,644 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:06:59,728 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:06:59,729 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = long long unsigned int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:06:59,731 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/population.cpp:228:46: 2026-05-08T13:06:59,731 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:06:59,733 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:06:59,734 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:07:02,097 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp: In instantiation of ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’: 2026-05-08T13:07:02,098 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:598:16: required from here 2026-05-08T13:07:02,099 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:570:42: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,100 570 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-05-08T13:07:02,101 | ^~~ 2026-05-08T13:07:02,103 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:570:42: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,104 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:570:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,105 570 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-05-08T13:07:02,106 | ~~~~^~~~~ 2026-05-08T13:07:02,108 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:570:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,185 [ 70%] Building CXX object CMakeFiles/sonata_static.dir/src/selection.cpp.o 2026-05-08T13:07:02,228 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp: In instantiation of ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’: 2026-05-08T13:07:02,229 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:598:16: required from here 2026-05-08T13:07:02,230 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:438:38: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,231 438 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-05-08T13:07:02,232 | ^~~ 2026-05-08T13:07:02,233 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:438:38: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,234 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:438:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,235 438 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-05-08T13:07:02,236 | ~~~~^~~~~ 2026-05-08T13:07:02,237 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:438:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,249 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:461:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,250 461 | dataset_elem_ids.select({std::get<0>(result.node_ranges[index])}, {1}).read(element_ids); 2026-05-08T13:07:02,251 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:02,252 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:461:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,370 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp: In instantiation of ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’: 2026-05-08T13:07:02,371 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:599:16: required from here 2026-05-08T13:07:02,372 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:570:42: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,373 570 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-05-08T13:07:02,373 | ^~~ 2026-05-08T13:07:02,374 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:570:42: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,375 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:570:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,375 570 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-05-08T13:07:02,376 | ~~~~^~~~~ 2026-05-08T13:07:02,377 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:570:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,447 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp: In instantiation of ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’: 2026-05-08T13:07:02,448 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:599:16: required from here 2026-05-08T13:07:02,449 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:438:38: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,450 438 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-05-08T13:07:02,451 | ^~~ 2026-05-08T13:07:02,452 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:438:38: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,453 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:438:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,454 438 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-05-08T13:07:02,455 | ~~~~^~~~~ 2026-05-08T13:07:02,456 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:438:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,459 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:461:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader >::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:02,460 461 | dataset_elem_ids.select({std::get<0>(result.node_ranges[index])}, {1}).read(element_ids); 2026-05-08T13:07:02,461 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:02,461 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:461:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader >::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-05-08T13:07:07,268 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-05-08T13:07:07,269 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned int; UnaryPredicate = {anonymous}::_filterStringAttribute >(const bbp::sonata::NodePopulation&, std::string, bbp::sonata::NodePopulation::regexMatch(const std::string&, const std::string&) const::)::]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:34:26, 2026-05-08T13:07:07,270 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_filterStringAttribute(const bbp::sonata::NodePopulation&, std::string, UnaryPredicate) [with UnaryPredicate = bbp::sonata::NodePopulation::regexMatch(const std::string&, const std::string&) const::]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:84:10, 2026-05-08T13:07:07,271 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::regexMatch(const std::string&, const std::string&) const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/nodes.cpp:110:57: 2026-05-08T13:07:07,272 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:07,273 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:07:07,274 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:07:08,460 [ 76%] Building CXX object CMakeFiles/sonata_static.dir/src/utils.cpp.o 2026-05-08T13:07:12,634 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:12,635 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:12,636 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5397:41, 2026-05-08T13:07:12,637 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10302:29: 2026-05-08T13:07:12,638 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:12,639 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:12,640 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:12,643 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:12,644 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:12,645 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5423:41, 2026-05-08T13:07:12,646 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10349:29: 2026-05-08T13:07:12,647 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:12,648 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:12,649 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:12,654 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:12,655 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long int&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:12,656 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_integer(number_integer_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5367:21, 2026-05-08T13:07:12,658 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10419:29: 2026-05-08T13:07:12,659 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:12,660 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:12,661 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:12,662 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:12,663 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:12,664 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::string(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5385:21, 2026-05-08T13:07:12,665 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10428:29: 2026-05-08T13:07:12,666 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:12,667 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:12,668 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:12,669 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:12,670 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long unsigned int&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:12,671 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_unsigned(number_unsigned_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5373:21, 2026-05-08T13:07:12,673 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10437:29: 2026-05-08T13:07:12,674 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:12,675 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:12,676 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:14,169 In file included from /usr/include/c++/12/algorithm:61, 2026-05-08T13:07:14,170 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/fmt/include/fmt/format-inl.h:12, 2026-05-08T13:07:14,171 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/fmt/include/fmt/format.h:4417, 2026-05-08T13:07:14,172 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/selection.cpp:3: 2026-05-08T13:07:14,173 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-05-08T13:07:14,174 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:14,175 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-05-08T13:07:14,175 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:14,241 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:07:14,242 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:14,243 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-08T13:07:14,244 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:07:14,245 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:14,315 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-05-08T13:07:14,316 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:07:14,317 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:14,318 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:07:14,319 | ^~~~~~~~~~~~~ 2026-05-08T13:07:15,711 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:07:15,712 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:7, 2026-05-08T13:07:15,713 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/selection.cpp:1: 2026-05-08T13:07:15,714 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:07:15,715 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:07:15,716 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:07:15,717 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:15,766 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:07:15,767 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:07:17,023 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-08T13:07:17,023 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:17,024 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5397:41, 2026-05-08T13:07:17,025 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10302:29: 2026-05-08T13:07:17,026 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:17,027 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:17,028 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:17,031 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-08T13:07:17,032 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:17,034 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5423:41, 2026-05-08T13:07:17,035 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10349:29: 2026-05-08T13:07:17,036 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:17,037 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:17,038 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:17,043 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-08T13:07:17,044 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long int&; BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:17,045 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_integer(number_integer_t) [with BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5367:21, 2026-05-08T13:07:17,046 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10419:29: 2026-05-08T13:07:17,047 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:17,048 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:17,049 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:17,050 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-08T13:07:17,051 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:17,052 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::string(string_t&) [with BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5385:21, 2026-05-08T13:07:17,053 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10428:29: 2026-05-08T13:07:17,054 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:17,055 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:17,056 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:17,057 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json; _Alloc = std::allocator >]’, 2026-05-08T13:07:17,058 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long unsigned int&; BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:17,058 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_unsigned(number_unsigned_t) [with BasicJsonType = nlohmann::basic_json]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5373:21, 2026-05-08T13:07:17,059 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10437:29: 2026-05-08T13:07:17,060 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:17,061 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:17,063 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:20,415 [ 82%] Building CXX object CMakeFiles/sonata_static.dir/src/version.cpp.o 2026-05-08T13:07:23,418 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-05-08T13:07:23,419 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:23,420 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:07:23,420 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:07:23,421 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:23,422 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:23,423 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:07:23,424 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:23,527 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:07:23,527 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/H5PropertyList.hpp:11, 2026-05-08T13:07:23,528 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/H5File.hpp:15, 2026-05-08T13:07:23,529 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_canonical_selection.hpp:3, 2026-05-08T13:07:23,529 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/hdf5_reader.hpp:3, 2026-05-08T13:07:23,530 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:1: 2026-05-08T13:07:23,531 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2026-05-08T13:07:23,532 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:07:23,533 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:07:23,533 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:23,612 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’, 2026-05-08T13:07:23,613 inlined from ‘bbp::sonata::SpikeTimes bbp::sonata::SpikeReader::Population::getArrays(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:190:52: 2026-05-08T13:07:23,614 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:07:23,615 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:23,616 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:23,617 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:07:23,618 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:07:23,619 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:79:14: 2026-05-08T13:07:23,620 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:23,620 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:07:23,621 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:07:23,623 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:07:23,623 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:23,624 1939 | __comp); 2026-05-08T13:07:23,625 | ~~~~~~~ 2026-05-08T13:07:23,625 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-05-08T13:07:23,626 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:07:23,627 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-05-08T13:07:23,628 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:79:14: 2026-05-08T13:07:23,628 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:23,629 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:07:23,630 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:23,631 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:23,632 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:07:23,633 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:23,634 In file included from /usr/include/c++/12/vector:64: 2026-05-08T13:07:23,635 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:23,636 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:89:18: 2026-05-08T13:07:23,637 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:23,637 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:07:23,638 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:07:23,639 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:23,640 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/read_bulk.hpp:99:26: 2026-05-08T13:07:23,641 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:23,642 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:07:23,643 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:07:23,729 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:23,730 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-05-08T13:07:23,731 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = const std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2026-05-08T13:07:23,732 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-05-08T13:07:23,732 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-05-08T13:07:23,733 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-05-08T13:07:23,734 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2026-05-08T13:07:23,735 inlined from ‘bool bbp::sonata::Selection::contains(Value) const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/selection.cpp:123:14: 2026-05-08T13:07:23,736 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:23,737 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:07:23,737 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:07:24,577 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:07:24,578 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:07:24,579 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:07:24,580 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:24,666 In file included from /usr/include/c++/12/unordered_set:46, 2026-05-08T13:07:24,667 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:7: 2026-05-08T13:07:24,668 /usr/include/c++/12/bits/hashtable.h: In constructor ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::_Hashtable(_InputIterator, _InputIterator, size_type, const _Hash&, const _Equal&, const allocator_type&, std::true_type) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Key = long long unsigned int; _Value = long long unsigned int; _Alloc = std::allocator; _ExtractKey = std::__detail::_Identity; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’: 2026-05-08T13:07:24,669 /usr/include/c++/12/bits/hashtable.h:1182:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:24,670 1182 | _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, 2026-05-08T13:07:24,671 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:24,672 1183 | _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>:: 2026-05-08T13:07:24,672 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:24,673 /usr/include/c++/12/bits/hashtable.h:1182:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:27,041 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {unsigned int&, double&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2026-05-08T13:07:27,042 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:07:27,043 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:07:27,044 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:28,689 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:07:28,690 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-08T13:07:28,718 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-05-08T13:07:28,719 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:28,719 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:28,720 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:28,853 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’: 2026-05-08T13:07:28,853 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:28,854 65 | Selection Selection::fromValues(Iterator first, Iterator last) { 2026-05-08T13:07:28,856 | ^~~~~~~~~ 2026-05-08T13:07:28,856 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:65:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:28,857 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:28,858 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:75:33: 2026-05-08T13:07:28,858 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:28,859 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:07:28,860 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:07:28,861 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:28,861 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/include/bbp/sonata/selection.h:84:25: 2026-05-08T13:07:28,862 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:28,863 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:07:28,864 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:07:28,888 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/selection.cpp: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(const Values&)’: 2026-05-08T13:07:28,889 /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/selection.cpp:71:51: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:28,890 71 | return fromValues(values.begin(), values.end()); 2026-05-08T13:07:28,891 | ^ 2026-05-08T13:07:28,918 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:28,919 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-05-08T13:07:28,919 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = const std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2026-05-08T13:07:28,920 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-05-08T13:07:28,922 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-05-08T13:07:28,922 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-05-08T13:07:28,923 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2026-05-08T13:07:28,924 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::union_(const Ranges&, const Ranges&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/selection.cpp:57:14: 2026-05-08T13:07:28,925 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:28,926 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:07:28,926 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:07:28,927 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:28,928 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-05-08T13:07:28,929 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = const std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2026-05-08T13:07:28,930 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-05-08T13:07:28,930 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-05-08T13:07:28,931 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-05-08T13:07:28,932 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2026-05-08T13:07:28,933 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::union_(const Ranges&, const Ranges&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/selection.cpp:58:14: 2026-05-08T13:07:28,934 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:28,934 1287 | _M_realloc_insert(end(), __x); 2026-05-08T13:07:28,935 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-08T13:07:28,986 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:28,987 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:07:28,988 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::intersection_(const Ranges&, const Ranges&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/selection.cpp:42:26: 2026-05-08T13:07:28,989 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:28,989 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:28,990 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:29,562 In constructor ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::_Hashtable(_InputIterator, _InputIterator, size_type, const _Hash&, const key_equal&, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Key = long long unsigned int; _Value = long long unsigned int; _Alloc = std::allocator; _ExtractKey = std::__detail::_Identity; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’, 2026-05-08T13:07:29,563 inlined from ‘std::unordered_set<_Value, _Hash, _Pred, _Alloc>::unordered_set(_InputIterator, _InputIterator, size_type, const hasher&, const key_equal&, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Value = long long unsigned int; _Hash = std::hash; _Pred = std::equal_to; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/unordered_set.h:171:4, 2026-05-08T13:07:29,564 inlined from ‘void {anonymous}::filterNodeIDUnsorted(bbp::sonata::Spikes&, const bbp::sonata::Selection&)’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:32:99, 2026-05-08T13:07:29,565 inlined from ‘void bbp::sonata::SpikeReader::Population::filterNode(bbp::sonata::Spikes&, const bbp::sonata::Selection&) const’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:239:29: 2026-05-08T13:07:29,565 /usr/include/c++/12/bits/hashtable.h:569:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:29,566 569 | __unique_keys{}) 2026-05-08T13:07:29,567 | ^ 2026-05-08T13:07:29,952 In file included from /usr/include/c++/12/algorithm:61, 2026-05-08T13:07:29,953 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:12, 2026-05-08T13:07:29,954 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../H5DataType.hpp:17, 2026-05-08T13:07:29,954 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:15, 2026-05-08T13:07:29,955 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:13, 2026-05-08T13:07:29,955 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/HighFive/include/highfive/H5File.hpp:16: 2026-05-08T13:07:29,956 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-08T13:07:29,957 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:29,957 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-05-08T13:07:29,958 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:07:29,959 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:29,992 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-08T13:07:29,993 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:29,994 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:30,030 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-08T13:07:30,031 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:30,032 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:30,068 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-08T13:07:30,069 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:30,070 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:36,756 In file included from /usr/include/c++/12/vector:70, 2026-05-08T13:07:36,757 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:16, 2026-05-08T13:07:36,757 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.cpp:10: 2026-05-08T13:07:36,758 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:07:36,759 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:07:36,759 175 | vector<_Tp, _Alloc>:: 2026-05-08T13:07:36,760 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:36,802 In file included from /usr/include/c++/12/vector:64: 2026-05-08T13:07:36,803 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:36,804 inlined from ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:20568:66: 2026-05-08T13:07:36,805 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:36,806 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2026-05-08T13:07:36,807 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:36,962 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:07:36,963 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:07:36,963 439 | vector<_Tp, _Alloc>:: 2026-05-08T13:07:36,964 | ^~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:37,052 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:07:37,053 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:07:37,095 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:07:37,096 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:07:37,144 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: 2026-05-08T13:07:37,145 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2026-05-08T13:07:39,658 In file included from /usr/include/c++/12/set:60, 2026-05-08T13:07:39,659 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:14: 2026-05-08T13:07:39,660 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: 2026-05-08T13:07:39,661 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:07:39,662 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-05-08T13:07:39,663 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:39,756 In file included from /usr/include/c++/12/map:61, 2026-05-08T13:07:39,757 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:61, 2026-05-08T13:07:39,757 from /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/utils.h:19: 2026-05-08T13:07:39,758 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-08T13:07:39,759 inlined from ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5599:76: 2026-05-08T13:07:39,760 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:07:39,760 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:07:39,761 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:39,761 512 | std::tuple(__k), 2026-05-08T13:07:39,762 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:39,763 513 | std::tuple<>()); 2026-05-08T13:07:39,763 | ~~~~~~~~~~~~~~~ 2026-05-08T13:07:40,626 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-05-08T13:07:40,626 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-08T13:07:40,627 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:40,628 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:07:40,629 | ^~~~~~~~~~~~~ 2026-05-08T13:07:40,701 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-08T13:07:40,702 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:40,702 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:07:40,703 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:07:40,704 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:40,704 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:40,705 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:07:40,706 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:40,998 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:40,999 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:07:41,000 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:287:31: 2026-05-08T13:07:41,000 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:41,001 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:41,002 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,002 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-05-08T13:07:41,003 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-08T13:07:41,004 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:305:22: 2026-05-08T13:07:41,005 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:41,006 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:07:41,006 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,007 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:07:41,008 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,009 1939 | __comp); 2026-05-08T13:07:41,009 | ~~~~~~~ 2026-05-08T13:07:41,010 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-05-08T13:07:41,011 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:07:41,012 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-08T13:07:41,013 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:305:22: 2026-05-08T13:07:41,014 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:41,014 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:07:41,015 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,016 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:41,016 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:07:41,017 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,018 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {unsigned int&, double&}; _Tp = std::pair; _Alloc = std::allocator >]’, 2026-05-08T13:07:41,019 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:320:38: 2026-05-08T13:07:41,019 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:41,020 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:41,021 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,609 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-08T13:07:41,610 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:41,610 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:07:41,611 | ^~~~~~~~~~~~~ 2026-05-08T13:07:41,685 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-08T13:07:41,686 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:41,687 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:07:41,687 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,688 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:41,688 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:41,689 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:07:41,690 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,948 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:41,950 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:390:48: 2026-05-08T13:07:41,951 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:41,951 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:41,952 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,953 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’, 2026-05-08T13:07:41,954 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-08T13:07:41,955 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:404:18: 2026-05-08T13:07:41,956 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:41,958 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:07:41,959 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,959 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:07:41,960 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,961 1939 | __comp); 2026-05-08T13:07:41,962 | ~~~~~~~ 2026-05-08T13:07:41,962 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’, 2026-05-08T13:07:41,963 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:07:41,964 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-08T13:07:41,965 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:404:18: 2026-05-08T13:07:41,965 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:41,966 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:07:41,967 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,968 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:41,969 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:07:41,969 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:41,970 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:41,971 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:07:41,972 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:420:48: 2026-05-08T13:07:41,973 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:41,974 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:41,974 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:42,701 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’, 2026-05-08T13:07:42,701 inlined from ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:541:38: 2026-05-08T13:07:42,702 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:07:42,703 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:42,704 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:43,343 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-08T13:07:43,344 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:43,345 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:07:43,345 | ^~~~~~~~~~~~~ 2026-05-08T13:07:43,420 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-05-08T13:07:43,421 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:43,422 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:07:43,423 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:07:43,424 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:43,425 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:43,426 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:07:43,426 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:43,728 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:43,728 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:07:43,729 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:287:31: 2026-05-08T13:07:43,730 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:43,730 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:43,731 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:43,732 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-05-08T13:07:43,733 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-08T13:07:43,733 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:305:22: 2026-05-08T13:07:43,734 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:43,735 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:07:43,736 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:07:43,736 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:07:43,737 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:43,738 1939 | __comp); 2026-05-08T13:07:43,738 | ~~~~~~~ 2026-05-08T13:07:43,739 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-05-08T13:07:43,740 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:07:43,741 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-08T13:07:43,742 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:305:22: 2026-05-08T13:07:43,743 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:43,744 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:07:43,744 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:43,745 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:43,746 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:07:43,747 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:43,747 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {unsigned int&, double&}; _Tp = std::pair; _Alloc = std::allocator >]’, 2026-05-08T13:07:43,748 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:320:38: 2026-05-08T13:07:43,749 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:43,750 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:43,751 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:44,342 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-08T13:07:44,343 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:44,344 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-05-08T13:07:44,345 | ^~~~~~~~~~~~~ 2026-05-08T13:07:44,418 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’: 2026-05-08T13:07:44,419 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:44,420 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-05-08T13:07:44,421 | ^~~~~~~~~~~~~~~~ 2026-05-08T13:07:44,421 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:44,422 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:44,423 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-05-08T13:07:44,423 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:44,690 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:44,691 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:390:48: 2026-05-08T13:07:44,691 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:44,692 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:44,693 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:44,694 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’, 2026-05-08T13:07:44,695 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-08T13:07:44,695 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:404:18: 2026-05-08T13:07:44,696 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:44,697 1937 | std::__introsort_loop(__first, __last, 2026-05-08T13:07:44,697 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-05-08T13:07:44,698 1938 | std::__lg(__last - __first) * 2, 2026-05-08T13:07:44,699 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:44,700 1939 | __comp); 2026-05-08T13:07:44,700 | ~~~~~~~ 2026-05-08T13:07:44,701 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’, 2026-05-08T13:07:44,702 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const:: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-05-08T13:07:44,702 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-05-08T13:07:44,703 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:404:18: 2026-05-08T13:07:44,704 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:44,705 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-05-08T13:07:44,705 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:44,706 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-08T13:07:44,707 1854 | std::__insertion_sort(__first, __last, __comp); 2026-05-08T13:07:44,707 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:44,708 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-05-08T13:07:44,709 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-08T13:07:44,709 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:420:48: 2026-05-08T13:07:44,710 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-08T13:07:44,711 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:44,711 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:45,447 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’, 2026-05-08T13:07:45,448 inlined from ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&, const nonstd::optional_lite::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/src/report_reader.cpp:541:38: 2026-05-08T13:07:45,448 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-08T13:07:45,449 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:45,450 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,522 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:46,522 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:46,523 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5397:41, 2026-05-08T13:07:46,524 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10302:29: 2026-05-08T13:07:46,524 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:46,525 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:46,526 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,527 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-08T13:07:46,527 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5411:72, 2026-05-08T13:07:46,528 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10325:29: 2026-05-08T13:07:46,528 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:07:46,529 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:07:46,529 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,530 512 | std::tuple(__k), 2026-05-08T13:07:46,531 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,532 513 | std::tuple<>()); 2026-05-08T13:07:46,532 | ~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,533 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:46,534 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = nlohmann::detail::value_t; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:46,534 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5423:41, 2026-05-08T13:07:46,535 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10349:29: 2026-05-08T13:07:46,536 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:46,537 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:46,537 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,538 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:46,538 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long int&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:46,539 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_integer(number_integer_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5367:21, 2026-05-08T13:07:46,539 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10419:29: 2026-05-08T13:07:46,540 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:46,541 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:46,541 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,542 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:46,543 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = std::__cxx11::basic_string&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:46,544 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::string(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5385:21, 2026-05-08T13:07:46,545 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10428:29: 2026-05-08T13:07:46,545 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:46,546 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:46,547 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,548 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’, 2026-05-08T13:07:46,548 inlined from ‘BasicJsonType* nlohmann::detail::json_sax_dom_parser::handle_value(Value&&) [with Value = long long unsigned int&; BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5479:58, 2026-05-08T13:07:46,549 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::number_unsigned(number_unsigned_t) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5373:21, 2026-05-08T13:07:46,549 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10437:29: 2026-05-08T13:07:46,550 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2026-05-08T13:07:46,550 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-08T13:07:46,551 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,552 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’, 2026-05-08T13:07:46,552 inlined from ‘bool nlohmann::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::basic_json<>]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:5411:72, 2026-05-08T13:07:46,553 inlined from ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/extlib/nlohmann/nlohmann/json.hpp:10521:25: 2026-05-08T13:07:46,554 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-05-08T13:07:46,555 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-05-08T13:07:46,555 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,556 512 | std::tuple(__k), 2026-05-08T13:07:46,557 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-08T13:07:46,557 513 | std::tuple<>()); 2026-05-08T13:07:46,558 | ~~~~~~~~~~~~~~~ 2026-05-08T13:07:48,546 [ 88%] Linking CXX static library libsonata.a 2026-05-08T13:07:49,429 [ 88%] Built target sonata_static 2026-05-08T13:07:49,495 [ 94%] Building CXX object python/CMakeFiles/_libsonata.dir/bindings.cpp.o 2026-05-08T13:09:05,123 [100%] Linking CXX shared module /tmp/pip-wheel-m3gpt9f4/libsonata_ea14adf86144407a8e7a2cb0352547b2/build/lib.linux-armv7l-cpython-311/libsonata/_libsonata.cpython-311-arm-linux-gnueabihf.so 2026-05-08T13:09:38,342 [100%] Built target _libsonata 2026-05-08T13:09:38,391 installing to build/bdist.linux-armv7l/wheel 2026-05-08T13:09:38,391 running install 2026-05-08T13:09:38,415 running install_lib 2026-05-08T13:09:38,427 creating build/bdist.linux-armv7l/wheel 2026-05-08T13:09:38,429 creating build/bdist.linux-armv7l/wheel/libsonata 2026-05-08T13:09:38,430 copying build/lib.linux-armv7l-cpython-311/libsonata/_libsonata.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./libsonata 2026-05-08T13:09:38,472 copying build/lib.linux-armv7l-cpython-311/libsonata/__init__.py -> build/bdist.linux-armv7l/wheel/./libsonata 2026-05-08T13:09:38,474 running install_egg_info 2026-05-08T13:09:38,498 running egg_info 2026-05-08T13:09:38,507 writing python/libsonata.egg-info/PKG-INFO 2026-05-08T13:09:38,513 writing dependency_links to python/libsonata.egg-info/dependency_links.txt 2026-05-08T13:09:38,515 writing requirements to python/libsonata.egg-info/requires.txt 2026-05-08T13:09:38,516 writing top-level names to python/libsonata.egg-info/top_level.txt 2026-05-08T13:09:38,545 /tmp/pip-build-env-r2f4iy_p/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-08T13:09:38,546 return get_active_overrides().subprocess_timeout 2026-05-08T13:09:38,554 listing git files failed - pretending there aren't any 2026-05-08T13:09:38,559 reading manifest file 'python/libsonata.egg-info/SOURCES.txt' 2026-05-08T13:09:38,617 reading manifest template 'MANIFEST.in' 2026-05-08T13:09:38,698 adding license file 'COPYING' 2026-05-08T13:09:38,699 adding license file 'COPYING.LESSER' 2026-05-08T13:09:38,700 adding license file 'AUTHORS.txt' 2026-05-08T13:09:38,711 writing manifest file 'python/libsonata.egg-info/SOURCES.txt' 2026-05-08T13:09:38,713 Copying python/libsonata.egg-info to build/bdist.linux-armv7l/wheel/./libsonata-0.1.36-py3.11.egg-info 2026-05-08T13:09:38,726 running install_scripts 2026-05-08T13:09:38,776 creating build/bdist.linux-armv7l/wheel/libsonata-0.1.36.dist-info/WHEEL 2026-05-08T13:09:38,780 creating '/tmp/pip-wheel-avspxi_w/.tmp-yyycqw4s/libsonata-0.1.36-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-08T13:09:38,782 adding 'libsonata/__init__.py' 2026-05-08T13:09:39,174 adding 'libsonata/_libsonata.cpython-311-arm-linux-gnueabihf.so' 2026-05-08T13:09:39,189 adding 'libsonata-0.1.36.dist-info/licenses/AUTHORS.txt' 2026-05-08T13:09:39,195 adding 'libsonata-0.1.36.dist-info/licenses/COPYING' 2026-05-08T13:09:39,197 adding 'libsonata-0.1.36.dist-info/licenses/COPYING.LESSER' 2026-05-08T13:09:39,199 adding 'libsonata-0.1.36.dist-info/METADATA' 2026-05-08T13:09:39,201 adding 'libsonata-0.1.36.dist-info/WHEEL' 2026-05-08T13:09:39,202 adding 'libsonata-0.1.36.dist-info/top_level.txt' 2026-05-08T13:09:39,202 adding 'libsonata-0.1.36.dist-info/RECORD' 2026-05-08T13:09:39,212 removing build/bdist.linux-armv7l/wheel 2026-05-08T13:09:39,320 Building wheel for libsonata (pyproject.toml): finished with status 'done' 2026-05-08T13:09:39,348 Created wheel for libsonata: filename=libsonata-0.1.36-cp311-cp311-linux_armv7l.whl size=796386 sha256=03083e3f78ecfc65ad02770ccbc388e59485f275bfe28cf245fe0e260061ca65 2026-05-08T13:09:39,349 Stored in directory: /tmp/pip-ephem-wheel-cache-7c6g0aw0/wheels/35/23/fc/5de59fc6a1a2faff7ae661a454cf31c0d93c49a586940b3956 2026-05-08T13:09:39,364 Successfully built libsonata 2026-05-08T13:09:39,387 Removed build tracker: '/tmp/pip-build-tracker-zrzro6o0'