2026-05-09T07:24:35,353 Created temporary directory: /tmp/pip-ephem-wheel-cache-_dbzj4k7 2026-05-09T07:24:35,355 Created temporary directory: /tmp/pip-build-tracker-5cyn8xor 2026-05-09T07:24:35,356 Initialized build tracking at /tmp/pip-build-tracker-5cyn8xor 2026-05-09T07:24:35,356 Created build tracker: /tmp/pip-build-tracker-5cyn8xor 2026-05-09T07:24:35,357 Entered build tracker: /tmp/pip-build-tracker-5cyn8xor 2026-05-09T07:24:35,358 Created temporary directory: /tmp/pip-wheel-6n9svkld 2026-05-09T07:24:35,360 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-09T07:24:35,363 Created temporary directory: /tmp/pip-ephem-wheel-cache-24zct6rl 2026-05-09T07:24:35,384 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-09T07:24:35,388 2 location(s) to search for versions of topaz-em: 2026-05-09T07:24:35,388 * https://pypi.org/simple/topaz-em/ 2026-05-09T07:24:35,388 * https://www.piwheels.org/simple/topaz-em/ 2026-05-09T07:24:35,389 Fetching project page and analyzing links: https://pypi.org/simple/topaz-em/ 2026-05-09T07:24:35,390 Getting page https://pypi.org/simple/topaz-em/ 2026-05-09T07:24:35,391 Found index url https://pypi.org/simple 2026-05-09T07:24:35,618 Fetched page https://pypi.org/simple/topaz-em/ as application/vnd.pypi.simple.v1+json 2026-05-09T07:24:35,627 Found link https://files.pythonhosted.org/packages/9a/cb/4f17f2c95da5e817fad0519039e7c11602b71852a4641109d9e482b6f559/topaz-em-0.2.0.tar.gz (from 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2026-05-09T07:24:35,643 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/d6/5d/f8715405f1fc39b0cddaf9434c8f609fcd296e49d7e0a637a88f69e56444/topaz_em-0.3.6-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8) 2026-05-09T07:24:35,644 Found link https://files.pythonhosted.org/packages/cd/29/268eb9a391c4fa7e151956f99e8d309d89fad9381fed9d2799d7e02737af/topaz_em-0.3.6.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.6 2026-05-09T07:24:35,644 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/43/8f/116313380191600f92b8cc038e2eda21d520cf5e7ccdc8c5f3e90970a8c3/topaz_em-0.3.7-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8) 2026-05-09T07:24:35,645 Found link https://files.pythonhosted.org/packages/27/b6/2426a0df9de7af9c1594cdf171606318e02a1e38d7cc01a0e9ba14c3b2ec/topaz_em-0.3.7.tar.gz (from 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0.3.16 2026-05-09T07:24:35,658 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/7d/da/62979e3d562f39e3d3cb6219431443f1378cc963d3e23faddb31d89bf4ab/topaz_em-0.3.17-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.13,>=3.8) 2026-05-09T07:24:35,659 Found link https://files.pythonhosted.org/packages/dd/6c/22dda886de7aef2f4e6a6abc69af8d5f91d4446d011536bc6c81466c9489/topaz_em-0.3.17.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.13,>=3.8), version: 0.3.17 2026-05-09T07:24:35,660 Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/42/95/652ddeb84411d5a2a56997361c296b7ff42596463a581aa8c1c4ae5130b7/topaz_em-0.3.18-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.13,>=3.8) 2026-05-09T07:24:35,661 Found link https://files.pythonhosted.org/packages/7c/01/ad2248484c0dabc5d8ae8cd231788c11f448b48e1e1a93198a36e0d59c60/topaz_em-0.3.18.tar.gz 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https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.3.12-py3-none-any.whl#sha256=8009571e4e8b33781ae127b7bea4f90f95946f98ad795ab242ce8c9c5b426395 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.13) 2026-05-09T07:24:35,861 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.3.11-py3-none-any.whl#sha256=86d1a70ca61fa927d90fcc5eda0cc88285812be65b54b0cdfc72c0ce0276d903 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12) 2026-05-09T07:24:35,861 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.3.10-py3-none-any.whl#sha256=a489fa8637ff98b2eed0ba235eb6cc5ed622a6fbb4875bd72d15e37edad54138 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12) 2026-05-09T07:24:35,862 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.3.7-py3-none-any.whl#sha256=0c756dce2522eb38ba1cd3816bedc647836d775670e16d9c2bdaad42b0d74269 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12) 2026-05-09T07:24:35,862 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.3.6-py3-none-any.whl#sha256=31bcbe65121c60b695fc172e31e788af269904cb6f023d6ea7acaadd03fd01ff (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12) 2026-05-09T07:24:35,863 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.3.5-py3-none-any.whl#sha256=a51b117556b0902d11bad3e1b0daaeb973ae7dcb00417b8bc07c1d895553d8a8 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12) 2026-05-09T07:24:35,863 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.3.4-py3-none-any.whl#sha256=b962fae383a6452ef55bc823afec9fd34b6f6bbb57274fa304f3a4a234f23dd1 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12) 2026-05-09T07:24:35,864 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.3.1-py3-none-any.whl#sha256=fcd3dfb22ccf0bcd8b54d07fc422adb69959f2e8f5a5391a18e3af1951f8ee8c (from https://www.piwheels.org/simple/topaz-em/) 2026-05-09T07:24:35,864 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.3.0-py3-none-any.whl#sha256=e5c103dabd6452cce717a507191eb761de4ee19c5ba288a4a302a3aa1b1ef6e8 (from https://www.piwheels.org/simple/topaz-em/) 2026-05-09T07:24:35,865 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.2.5-py3-none-any.whl#sha256=67328ced1dd8efa4457ae7bdcb631764345c2c993ffa5feece627ba2c4032a88 (from https://www.piwheels.org/simple/topaz-em/) 2026-05-09T07:24:35,865 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.2.5a0-py3-none-any.whl#sha256=40669a56d2963f8562b92b6384e04ddea6c49a71b42acd170fcd8e746daf07ea (from https://www.piwheels.org/simple/topaz-em/) 2026-05-09T07:24:35,866 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.2.4-py3-none-any.whl#sha256=25561ebcb450d9aa42ef63bf569d1b60dab233206b186bb02b246d8284b23b5b (from https://www.piwheels.org/simple/topaz-em/) 2026-05-09T07:24:35,867 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.2.3-py3-none-any.whl#sha256=5c4ee55a8cc36e266f4ec651f877a0838e708aa9cf6cc47b9dcbde3db09721bb (from https://www.piwheels.org/simple/topaz-em/) 2026-05-09T07:24:35,867 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.2.2-py3-none-any.whl#sha256=0a51911e290fe605f2fe66b679611e6c2c1029e9edb6a5d8d773f2d0b96c8a4d (from https://www.piwheels.org/simple/topaz-em/) 2026-05-09T07:24:35,868 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.2.1-py2.py3-none-any.whl#sha256=b2f6e70ec7312a3436aef3c8b489653949ebc068c5cbb4040faafbec7c6babaa (from https://www.piwheels.org/simple/topaz-em/) 2026-05-09T07:24:35,868 Skipping link: No binaries permitted for topaz-em: https://archive1.piwheels.org/simple/topaz-em/topaz_em-0.2.0-py2.py3-none-any.whl#sha256=1d1baffd7a4784078276df7728dc046ffaac7af882967260db369d674bc262f3 (from https://www.piwheels.org/simple/topaz-em/) 2026-05-09T07:24:35,869 Skipping link: not a file: https://www.piwheels.org/simple/topaz-em/ 2026-05-09T07:24:35,870 Skipping link: not a file: https://pypi.org/simple/topaz-em/ 2026-05-09T07:24:35,891 Given no hashes to check 1 links for project 'topaz-em': discarding no candidates 2026-05-09T07:24:35,909 Collecting topaz-em==0.3.19 2026-05-09T07:24:35,912 Created temporary directory: /tmp/pip-unpack-a2hd7ovg 2026-05-09T07:24:36,143 Downloading topaz_em-0.3.19.tar.gz (48.2 MB) 2026-05-09T07:24:45,307 Added topaz-em==0.3.19 from https://files.pythonhosted.org/packages/5d/4a/728f5791a8594aacffd7048caa8ee6442e2d77a6a38474146395a399c14d/topaz_em-0.3.19.tar.gz to build tracker '/tmp/pip-build-tracker-5cyn8xor' 2026-05-09T07:24:45,312 Created temporary directory: /tmp/pip-build-env-dgozpq7t 2026-05-09T07:24:45,316 Installing build dependencies: started 2026-05-09T07:24:45,318 Running command pip subprocess to install build dependencies 2026-05-09T07:24:46,462 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-09T07:24:46,900 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-09T07:24:46,924 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-09T07:24:48,710 Collecting setuptools>=61 2026-05-09T07:24:48,793 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-09T07:24:49,067 Collecting wheel 2026-05-09T07:24:49,081 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-09T07:24:49,268 Collecting packaging>=24.0 2026-05-09T07:24:49,286 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-09T07:24:52,508 Installing collected packages: setuptools, packaging, wheel 2026-05-09T07:24:56,003 Creating /tmp/pip-build-env-dgozpq7t/overlay/local/bin 2026-05-09T07:24:56,005 changing mode of /tmp/pip-build-env-dgozpq7t/overlay/local/bin/wheel to 755 2026-05-09T07:24:56,026 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-05-09T07:24:56,307 Installing build dependencies: finished with status 'done' 2026-05-09T07:24:56,313 Getting requirements to build wheel: started 2026-05-09T07:24:56,315 Running command Getting requirements to build wheel 2026-05-09T07:24:56,957 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-09T07:24:56,957 !! 2026-05-09T07:24:56,958 ******************************************************************************** 2026-05-09T07:24:56,959 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-09T07:24:56,960 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-09T07:24:56,960 or your builds will no longer be supported. 2026-05-09T07:24:56,961 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-09T07:24:56,962 ******************************************************************************** 2026-05-09T07:24:56,963 !! 2026-05-09T07:24:56,964 corresp(dist, value, root_dir) 2026-05-09T07:24:56,964 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-05-09T07:24:56,965 corresp(dist, value, root_dir) 2026-05-09T07:24:57,034 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-09T07:24:57,035 !! 2026-05-09T07:24:57,036 ******************************************************************************** 2026-05-09T07:24:57,036 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-09T07:24:57,038 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-09T07:24:57,038 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-09T07:24:57,039 ******************************************************************************** 2026-05-09T07:24:57,040 !! 2026-05-09T07:24:57,040 dist._finalize_license_expression() 2026-05-09T07:24:57,040 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-09T07:24:57,041 !! 2026-05-09T07:24:57,042 ******************************************************************************** 2026-05-09T07:24:57,042 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-09T07:24:57,043 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-09T07:24:57,044 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-09T07:24:57,044 ******************************************************************************** 2026-05-09T07:24:57,045 !! 2026-05-09T07:24:57,046 self._finalize_license_expression() 2026-05-09T07:24:57,047 running egg_info 2026-05-09T07:24:57,052 writing topaz_em.egg-info/PKG-INFO 2026-05-09T07:24:57,057 writing dependency_links to topaz_em.egg-info/dependency_links.txt 2026-05-09T07:24:57,058 writing entry points to topaz_em.egg-info/entry_points.txt 2026-05-09T07:24:57,060 writing requirements to topaz_em.egg-info/requires.txt 2026-05-09T07:24:57,061 writing top-level names to topaz_em.egg-info/top_level.txt 2026-05-09T07:24:57,093 reading manifest file 'topaz_em.egg-info/SOURCES.txt' 2026-05-09T07:24:57,099 reading manifest template 'MANIFEST.in' 2026-05-09T07:24:57,102 adding license file 'LICENSE' 2026-05-09T07:24:57,108 writing manifest file 'topaz_em.egg-info/SOURCES.txt' 2026-05-09T07:24:57,207 Getting requirements to build wheel: finished with status 'done' 2026-05-09T07:24:57,211 Created temporary directory: /tmp/pip-modern-metadata-yb21hgsu 2026-05-09T07:24:57,213 Preparing metadata (pyproject.toml): started 2026-05-09T07:24:57,215 Running command Preparing metadata (pyproject.toml) 2026-05-09T07:24:57,817 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-09T07:24:57,817 !! 2026-05-09T07:24:57,818 ******************************************************************************** 2026-05-09T07:24:57,819 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-09T07:24:57,820 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-09T07:24:57,821 or your builds will no longer be supported. 2026-05-09T07:24:57,822 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-09T07:24:57,822 ******************************************************************************** 2026-05-09T07:24:57,823 !! 2026-05-09T07:24:57,824 corresp(dist, value, root_dir) 2026-05-09T07:24:57,824 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-05-09T07:24:57,825 corresp(dist, value, root_dir) 2026-05-09T07:24:57,893 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-09T07:24:57,893 !! 2026-05-09T07:24:57,894 ******************************************************************************** 2026-05-09T07:24:57,895 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-09T07:24:57,896 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-09T07:24:57,897 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-09T07:24:57,897 ******************************************************************************** 2026-05-09T07:24:57,898 !! 2026-05-09T07:24:57,899 dist._finalize_license_expression() 2026-05-09T07:24:57,899 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-09T07:24:57,900 !! 2026-05-09T07:24:57,901 ******************************************************************************** 2026-05-09T07:24:57,901 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-09T07:24:57,902 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-09T07:24:57,903 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-09T07:24:57,904 ******************************************************************************** 2026-05-09T07:24:57,905 !! 2026-05-09T07:24:57,905 self._finalize_license_expression() 2026-05-09T07:24:57,906 running dist_info 2026-05-09T07:24:57,914 creating /tmp/pip-modern-metadata-yb21hgsu/topaz_em.egg-info 2026-05-09T07:24:57,915 writing /tmp/pip-modern-metadata-yb21hgsu/topaz_em.egg-info/PKG-INFO 2026-05-09T07:24:57,919 writing dependency_links to /tmp/pip-modern-metadata-yb21hgsu/topaz_em.egg-info/dependency_links.txt 2026-05-09T07:24:57,921 writing entry points to /tmp/pip-modern-metadata-yb21hgsu/topaz_em.egg-info/entry_points.txt 2026-05-09T07:24:57,922 writing requirements to /tmp/pip-modern-metadata-yb21hgsu/topaz_em.egg-info/requires.txt 2026-05-09T07:24:57,923 writing top-level names to /tmp/pip-modern-metadata-yb21hgsu/topaz_em.egg-info/top_level.txt 2026-05-09T07:24:57,925 writing manifest file '/tmp/pip-modern-metadata-yb21hgsu/topaz_em.egg-info/SOURCES.txt' 2026-05-09T07:24:57,953 reading manifest file '/tmp/pip-modern-metadata-yb21hgsu/topaz_em.egg-info/SOURCES.txt' 2026-05-09T07:24:57,955 reading manifest template 'MANIFEST.in' 2026-05-09T07:24:57,958 adding license file 'LICENSE' 2026-05-09T07:24:57,963 writing manifest file '/tmp/pip-modern-metadata-yb21hgsu/topaz_em.egg-info/SOURCES.txt' 2026-05-09T07:24:57,964 creating '/tmp/pip-modern-metadata-yb21hgsu/topaz_em-0.3.19.dist-info' 2026-05-09T07:24:58,094 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-09T07:24:58,101 Source in /tmp/pip-wheel-6n9svkld/topaz-em_8af0c6809f924b6ba502a60e2c5d67ee has version 0.3.19, which satisfies requirement topaz-em==0.3.19 from https://files.pythonhosted.org/packages/5d/4a/728f5791a8594aacffd7048caa8ee6442e2d77a6a38474146395a399c14d/topaz_em-0.3.19.tar.gz 2026-05-09T07:24:58,102 Removed topaz-em==0.3.19 from https://files.pythonhosted.org/packages/5d/4a/728f5791a8594aacffd7048caa8ee6442e2d77a6a38474146395a399c14d/topaz_em-0.3.19.tar.gz from build tracker '/tmp/pip-build-tracker-5cyn8xor' 2026-05-09T07:24:58,110 Created temporary directory: /tmp/pip-unpack-lo2q5o0x 2026-05-09T07:24:58,111 Building wheels for collected packages: topaz-em 2026-05-09T07:24:58,116 Created temporary directory: /tmp/pip-wheel-skodynzu 2026-05-09T07:24:58,116 Destination directory: /tmp/pip-wheel-skodynzu 2026-05-09T07:24:58,119 Building wheel for topaz-em (pyproject.toml): started 2026-05-09T07:24:58,121 Running command Building wheel for topaz-em (pyproject.toml) 2026-05-09T07:24:58,680 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-09T07:24:58,680 !! 2026-05-09T07:24:58,681 ******************************************************************************** 2026-05-09T07:24:58,682 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-09T07:24:58,682 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-09T07:24:58,683 or your builds will no longer be supported. 2026-05-09T07:24:58,684 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-09T07:24:58,684 ******************************************************************************** 2026-05-09T07:24:58,685 !! 2026-05-09T07:24:58,685 corresp(dist, value, root_dir) 2026-05-09T07:24:58,686 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-05-09T07:24:58,686 corresp(dist, value, root_dir) 2026-05-09T07:24:58,751 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-09T07:24:58,751 !! 2026-05-09T07:24:58,752 ******************************************************************************** 2026-05-09T07:24:58,753 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-09T07:24:58,754 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-09T07:24:58,755 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-09T07:24:58,756 ******************************************************************************** 2026-05-09T07:24:58,757 !! 2026-05-09T07:24:58,758 dist._finalize_license_expression() 2026-05-09T07:24:58,758 /tmp/pip-build-env-dgozpq7t/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-09T07:24:58,759 !! 2026-05-09T07:24:58,760 ******************************************************************************** 2026-05-09T07:24:58,761 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-09T07:24:58,762 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-09T07:24:58,764 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-09T07:24:58,764 ******************************************************************************** 2026-05-09T07:24:58,765 !! 2026-05-09T07:24:58,766 self._finalize_license_expression() 2026-05-09T07:24:58,766 running bdist_wheel 2026-05-09T07:24:58,778 running build 2026-05-09T07:24:58,779 running build_py 2026-05-09T07:24:58,785 creating build/lib/topaz 2026-05-09T07:24:58,789 copying topaz/denoise.py -> build/lib/topaz 2026-05-09T07:24:58,791 copying topaz/predict.py -> build/lib/topaz 2026-05-09T07:24:58,793 copying topaz/extract.py -> build/lib/topaz 2026-05-09T07:24:58,796 copying topaz/metrics.py -> build/lib/topaz 2026-05-09T07:24:58,798 copying topaz/training.py -> build/lib/topaz 2026-05-09T07:24:58,801 copying topaz/cuda.py -> build/lib/topaz 2026-05-09T07:24:58,803 copying topaz/main.py -> build/lib/topaz 2026-05-09T07:24:58,805 copying topaz/stats.py -> build/lib/topaz 2026-05-09T07:24:58,808 copying topaz/__init__.py -> build/lib/topaz 2026-05-09T07:24:58,809 copying topaz/filters.py -> build/lib/topaz 2026-05-09T07:24:58,812 copying topaz/torch.py -> build/lib/topaz 2026-05-09T07:24:58,813 copying topaz/_version.py -> build/lib/topaz 2026-05-09T07:24:58,815 copying topaz/mrc.py -> build/lib/topaz 2026-05-09T07:24:58,817 copying topaz/methods.py -> build/lib/topaz 2026-05-09T07:24:58,819 copying topaz/algorithms.py -> build/lib/topaz 2026-05-09T07:24:58,822 creating build/lib/topaz/transform 2026-05-09T07:24:58,823 copying topaz/transform/scaled_gaussian_mixture.py -> build/lib/topaz/transform 2026-05-09T07:24:58,825 copying topaz/transform/__init__.py -> build/lib/topaz/transform 2026-05-09T07:24:58,828 creating build/lib/topaz/utils 2026-05-09T07:24:58,829 copying topaz/utils/files.py -> build/lib/topaz/utils 2026-05-09T07:24:58,831 copying topaz/utils/star.py -> build/lib/topaz/utils 2026-05-09T07:24:58,833 copying topaz/utils/printing.py -> build/lib/topaz/utils 2026-05-09T07:24:58,835 copying topaz/utils/conversions.py -> build/lib/topaz/utils 2026-05-09T07:24:58,837 copying topaz/utils/__init__.py -> build/lib/topaz/utils 2026-05-09T07:24:58,839 copying topaz/utils/picks.py -> build/lib/topaz/utils 2026-05-09T07:24:58,841 copying topaz/utils/image.py -> build/lib/topaz/utils 2026-05-09T07:24:58,844 creating build/lib/topaz/denoising 2026-05-09T07:24:58,845 copying topaz/denoising/datasets.py -> build/lib/topaz/denoising 2026-05-09T07:24:58,848 copying topaz/denoising/__init__.py -> build/lib/topaz/denoising 2026-05-09T07:24:58,849 copying topaz/denoising/models.py -> build/lib/topaz/denoising 2026-05-09T07:24:58,852 creating build/lib/topaz/model 2026-05-09T07:24:58,853 copying topaz/model/classifier.py -> build/lib/topaz/model 2026-05-09T07:24:58,855 copying topaz/model/__init__.py -> build/lib/topaz/model 2026-05-09T07:24:58,857 copying topaz/model/utils.py -> build/lib/topaz/model 2026-05-09T07:24:58,859 copying topaz/model/factory.py -> build/lib/topaz/model 2026-05-09T07:24:58,861 copying topaz/model/generative.py -> build/lib/topaz/model 2026-05-09T07:24:58,866 creating build/lib/topaz/commands 2026-05-09T07:24:58,867 copying topaz/commands/denoise.py -> build/lib/topaz/commands 2026-05-09T07:24:58,870 copying topaz/commands/downsample.py -> build/lib/topaz/commands 2026-05-09T07:24:58,872 copying topaz/commands/scale_coordinates.py -> build/lib/topaz/commands 2026-05-09T07:24:58,874 copying topaz/commands/coordinates_to_star.py -> build/lib/topaz/commands 2026-05-09T07:24:58,876 copying topaz/commands/particle_stack.py -> build/lib/topaz/commands 2026-05-09T07:24:58,878 copying topaz/commands/extract.py -> build/lib/topaz/commands 2026-05-09T07:24:58,880 copying topaz/commands/gui.py -> build/lib/topaz/commands 2026-05-09T07:24:58,882 copying topaz/commands/convert.py -> build/lib/topaz/commands 2026-05-09T07:24:58,884 copying topaz/commands/segment.py -> build/lib/topaz/commands 2026-05-09T07:24:58,886 copying topaz/commands/train.py -> build/lib/topaz/commands 2026-05-09T07:24:58,889 copying topaz/commands/train_test_split.py -> build/lib/topaz/commands 2026-05-09T07:24:58,891 copying topaz/commands/coordinates_to_eman2_json.py -> build/lib/topaz/commands 2026-05-09T07:24:58,893 copying topaz/commands/preprocess.py -> build/lib/topaz/commands 2026-05-09T07:24:58,895 copying topaz/commands/coordinates_to_boxes.py -> build/lib/topaz/commands 2026-05-09T07:24:58,897 copying topaz/commands/__init__.py -> build/lib/topaz/commands 2026-05-09T07:24:58,899 copying topaz/commands/normalize.py -> build/lib/topaz/commands 2026-05-09T07:24:58,901 copying topaz/commands/boxes_to_coordinates.py -> build/lib/topaz/commands 2026-05-09T07:24:58,903 copying topaz/commands/denoise3d.py -> build/lib/topaz/commands 2026-05-09T07:24:58,905 copying topaz/commands/precision_recall_curve.py -> build/lib/topaz/commands 2026-05-09T07:24:58,908 copying topaz/commands/star_to_coordinates.py -> build/lib/topaz/commands 2026-05-09T07:24:58,910 copying topaz/commands/split.py -> build/lib/topaz/commands 2026-05-09T07:24:58,912 copying topaz/commands/star_particles_threshold.py -> build/lib/topaz/commands 2026-05-09T07:24:58,914 creating build/lib/topaz/utils/data 2026-05-09T07:24:58,915 copying topaz/utils/data/sampler.py -> build/lib/topaz/utils/data 2026-05-09T07:24:58,918 copying topaz/utils/data/partition.py -> build/lib/topaz/utils/data 2026-05-09T07:24:58,920 copying topaz/utils/data/memory_mapped_data.py -> build/lib/topaz/utils/data 2026-05-09T07:24:58,922 copying topaz/utils/data/loader.py -> build/lib/topaz/utils/data 2026-05-09T07:24:58,924 copying topaz/utils/data/__init__.py -> build/lib/topaz/utils/data 2026-05-09T07:24:58,926 copying topaz/utils/data/train_test_split_micrographs.py -> build/lib/topaz/utils/data 2026-05-09T07:24:58,928 copying topaz/utils/data/coordinates.py -> build/lib/topaz/utils/data 2026-05-09T07:24:58,931 creating build/lib/topaz/model/features 2026-05-09T07:24:58,932 copying topaz/model/features/basic.py -> build/lib/topaz/model/features 2026-05-09T07:24:58,934 copying topaz/model/features/densenet.py -> build/lib/topaz/model/features 2026-05-09T07:24:58,936 copying topaz/model/features/__init__.py -> build/lib/topaz/model/features 2026-05-09T07:24:58,938 copying topaz/model/features/msnet.py -> build/lib/topaz/model/features 2026-05-09T07:24:58,941 copying topaz/model/features/resnet.py -> build/lib/topaz/model/features 2026-05-09T07:24:58,944 running egg_info 2026-05-09T07:24:58,956 writing topaz_em.egg-info/PKG-INFO 2026-05-09T07:24:58,960 writing dependency_links to topaz_em.egg-info/dependency_links.txt 2026-05-09T07:24:58,961 writing entry points to topaz_em.egg-info/entry_points.txt 2026-05-09T07:24:58,962 writing requirements to topaz_em.egg-info/requires.txt 2026-05-09T07:24:58,963 writing top-level names to topaz_em.egg-info/top_level.txt 2026-05-09T07:24:58,983 reading manifest file 'topaz_em.egg-info/SOURCES.txt' 2026-05-09T07:24:58,989 reading manifest template 'MANIFEST.in' 2026-05-09T07:24:58,992 adding license file 'LICENSE' 2026-05-09T07:24:58,998 writing manifest file 'topaz_em.egg-info/SOURCES.txt' 2026-05-09T07:24:59,006 creating build/lib/topaz/gui 2026-05-09T07:24:59,007 copying topaz/gui/topaz.html -> build/lib/topaz/gui 2026-05-09T07:24:59,019 creating build/lib/topaz/pretrained/detector 2026-05-09T07:24:59,020 copying topaz/pretrained/detector/resnet16_u32.sav -> build/lib/topaz/pretrained/detector 2026-05-09T07:24:59,054 copying topaz/pretrained/detector/resnet16_u64.sav -> build/lib/topaz/pretrained/detector 2026-05-09T07:24:59,165 copying topaz/pretrained/detector/resnet8_u32.sav -> build/lib/topaz/pretrained/detector 2026-05-09T07:24:59,188 copying topaz/pretrained/detector/resnet8_u64.sav -> build/lib/topaz/pretrained/detector 2026-05-09T07:24:59,268 creating build/lib/topaz/pretrained/denoise 2026-05-09T07:24:59,269 copying topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise 2026-05-09T07:24:59,272 copying topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise 2026-05-09T07:24:59,304 copying topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise 2026-05-09T07:24:59,477 copying topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise 2026-05-09T07:24:59,659 copying topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/lib/topaz/pretrained/denoise 2026-05-09T07:24:59,717 copying topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/lib/topaz/pretrained/denoise 2026-05-09T07:24:59,783 copying topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise 2026-05-09T07:24:59,836 installing to build/bdist.linux-armv7l/wheel 2026-05-09T07:24:59,837 running install 2026-05-09T07:24:59,861 running install_lib 2026-05-09T07:24:59,867 creating build/bdist.linux-armv7l/wheel 2026-05-09T07:24:59,870 creating build/bdist.linux-armv7l/wheel/topaz 2026-05-09T07:24:59,871 copying build/lib/topaz/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:24:59,874 copying build/lib/topaz/predict.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:24:59,877 creating build/bdist.linux-armv7l/wheel/topaz/transform 2026-05-09T07:24:59,878 copying build/lib/topaz/transform/scaled_gaussian_mixture.py -> build/bdist.linux-armv7l/wheel/./topaz/transform 2026-05-09T07:24:59,881 copying build/lib/topaz/transform/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/transform 2026-05-09T07:24:59,883 creating build/bdist.linux-armv7l/wheel/topaz/utils 2026-05-09T07:24:59,884 copying build/lib/topaz/utils/files.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2026-05-09T07:24:59,887 copying build/lib/topaz/utils/star.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2026-05-09T07:24:59,890 creating build/bdist.linux-armv7l/wheel/topaz/utils/data 2026-05-09T07:24:59,891 copying build/lib/topaz/utils/data/sampler.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2026-05-09T07:24:59,894 copying build/lib/topaz/utils/data/partition.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2026-05-09T07:24:59,896 copying build/lib/topaz/utils/data/memory_mapped_data.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2026-05-09T07:24:59,899 copying build/lib/topaz/utils/data/loader.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2026-05-09T07:24:59,901 copying build/lib/topaz/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2026-05-09T07:24:59,903 copying build/lib/topaz/utils/data/train_test_split_micrographs.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2026-05-09T07:24:59,905 copying build/lib/topaz/utils/data/coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data 2026-05-09T07:24:59,907 copying build/lib/topaz/utils/printing.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2026-05-09T07:24:59,909 copying build/lib/topaz/utils/conversions.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2026-05-09T07:24:59,912 copying build/lib/topaz/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2026-05-09T07:24:59,913 copying build/lib/topaz/utils/picks.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2026-05-09T07:24:59,916 copying build/lib/topaz/utils/image.py -> build/bdist.linux-armv7l/wheel/./topaz/utils 2026-05-09T07:24:59,918 copying build/lib/topaz/extract.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:24:59,921 copying build/lib/topaz/metrics.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:24:59,923 creating build/bdist.linux-armv7l/wheel/topaz/denoising 2026-05-09T07:24:59,925 copying build/lib/topaz/denoising/datasets.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising 2026-05-09T07:24:59,928 copying build/lib/topaz/denoising/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising 2026-05-09T07:24:59,929 copying build/lib/topaz/denoising/models.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising 2026-05-09T07:24:59,932 copying build/lib/topaz/training.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:24:59,936 creating build/bdist.linux-armv7l/wheel/topaz/model 2026-05-09T07:24:59,938 creating build/bdist.linux-armv7l/wheel/topaz/model/features 2026-05-09T07:24:59,939 copying build/lib/topaz/model/features/basic.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features 2026-05-09T07:24:59,941 copying build/lib/topaz/model/features/densenet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features 2026-05-09T07:24:59,943 copying build/lib/topaz/model/features/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features 2026-05-09T07:24:59,945 copying build/lib/topaz/model/features/msnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features 2026-05-09T07:24:59,947 copying build/lib/topaz/model/features/resnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features 2026-05-09T07:24:59,949 copying build/lib/topaz/model/classifier.py -> build/bdist.linux-armv7l/wheel/./topaz/model 2026-05-09T07:24:59,952 copying build/lib/topaz/model/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model 2026-05-09T07:24:59,953 copying build/lib/topaz/model/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/model 2026-05-09T07:24:59,956 copying build/lib/topaz/model/factory.py -> build/bdist.linux-armv7l/wheel/./topaz/model 2026-05-09T07:24:59,958 copying build/lib/topaz/model/generative.py -> build/bdist.linux-armv7l/wheel/./topaz/model 2026-05-09T07:24:59,960 copying build/lib/topaz/cuda.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:24:59,962 copying build/lib/topaz/main.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:24:59,964 copying build/lib/topaz/stats.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:24:59,967 copying build/lib/topaz/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:24:59,969 creating build/bdist.linux-armv7l/wheel/topaz/pretrained 2026-05-09T07:24:59,971 creating build/bdist.linux-armv7l/wheel/topaz/pretrained/detector 2026-05-09T07:24:59,972 copying build/lib/topaz/pretrained/detector/resnet8_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector 2026-05-09T07:25:00,056 copying build/lib/topaz/pretrained/detector/resnet8_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector 2026-05-09T07:25:00,077 copying build/lib/topaz/pretrained/detector/resnet16_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector 2026-05-09T07:25:00,115 copying build/lib/topaz/pretrained/detector/resnet16_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector 2026-05-09T07:25:00,342 creating build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise 2026-05-09T07:25:00,343 copying build/lib/topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2026-05-09T07:25:00,346 copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2026-05-09T07:25:00,413 copying build/lib/topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2026-05-09T07:25:00,629 copying build/lib/topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2026-05-09T07:25:00,805 copying build/lib/topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2026-05-09T07:25:00,835 copying build/lib/topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2026-05-09T07:25:00,878 copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise 2026-05-09T07:25:00,946 copying build/lib/topaz/filters.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:25:00,949 copying build/lib/topaz/torch.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:25:00,952 copying build/lib/topaz/_version.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:25:00,955 creating build/bdist.linux-armv7l/wheel/topaz/gui 2026-05-09T07:25:00,957 copying build/lib/topaz/gui/topaz.html -> build/bdist.linux-armv7l/wheel/./topaz/gui 2026-05-09T07:25:00,974 copying build/lib/topaz/mrc.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:25:00,991 creating build/bdist.linux-armv7l/wheel/topaz/commands 2026-05-09T07:25:00,999 copying build/lib/topaz/commands/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,016 copying build/lib/topaz/commands/downsample.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,028 copying build/lib/topaz/commands/scale_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,041 copying build/lib/topaz/commands/coordinates_to_star.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,054 copying build/lib/topaz/commands/particle_stack.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,066 copying build/lib/topaz/commands/extract.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,081 copying build/lib/topaz/commands/gui.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,091 copying build/lib/topaz/commands/convert.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,103 copying build/lib/topaz/commands/segment.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,107 copying build/lib/topaz/commands/train.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,109 copying build/lib/topaz/commands/train_test_split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,111 copying build/lib/topaz/commands/coordinates_to_eman2_json.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,113 copying build/lib/topaz/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,115 copying build/lib/topaz/commands/coordinates_to_boxes.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,117 copying build/lib/topaz/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,119 copying build/lib/topaz/commands/normalize.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,121 copying build/lib/topaz/commands/boxes_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,123 copying build/lib/topaz/commands/denoise3d.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,125 copying build/lib/topaz/commands/precision_recall_curve.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,128 copying build/lib/topaz/commands/star_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,129 copying build/lib/topaz/commands/split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,131 copying build/lib/topaz/commands/star_particles_threshold.py -> build/bdist.linux-armv7l/wheel/./topaz/commands 2026-05-09T07:25:01,133 copying build/lib/topaz/methods.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:25:01,136 copying build/lib/topaz/algorithms.py -> build/bdist.linux-armv7l/wheel/./topaz 2026-05-09T07:25:01,138 running install_egg_info 2026-05-09T07:25:01,144 Copying topaz_em.egg-info to build/bdist.linux-armv7l/wheel/./topaz_em-0.3.19-py3.11.egg-info 2026-05-09T07:25:01,156 running install_scripts 2026-05-09T07:25:01,169 creating build/bdist.linux-armv7l/wheel/topaz_em-0.3.19.dist-info/WHEEL 2026-05-09T07:25:01,172 creating '/tmp/pip-wheel-skodynzu/.tmp-q2tupr_d/topaz_em-0.3.19-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-09T07:25:01,174 adding 'topaz/__init__.py' 2026-05-09T07:25:01,176 adding 'topaz/_version.py' 2026-05-09T07:25:01,178 adding 'topaz/algorithms.py' 2026-05-09T07:25:01,180 adding 'topaz/cuda.py' 2026-05-09T07:25:01,183 adding 'topaz/denoise.py' 2026-05-09T07:25:01,186 adding 'topaz/extract.py' 2026-05-09T07:25:01,188 adding 'topaz/filters.py' 2026-05-09T07:25:01,190 adding 'topaz/main.py' 2026-05-09T07:25:01,192 adding 'topaz/methods.py' 2026-05-09T07:25:01,194 adding 'topaz/metrics.py' 2026-05-09T07:25:01,196 adding 'topaz/mrc.py' 2026-05-09T07:25:01,198 adding 'topaz/predict.py' 2026-05-09T07:25:01,200 adding 'topaz/stats.py' 2026-05-09T07:25:01,201 adding 'topaz/torch.py' 2026-05-09T07:25:01,205 adding 'topaz/training.py' 2026-05-09T07:25:01,207 adding 'topaz/commands/__init__.py' 2026-05-09T07:25:01,208 adding 'topaz/commands/boxes_to_coordinates.py' 2026-05-09T07:25:01,210 adding 'topaz/commands/convert.py' 2026-05-09T07:25:01,211 adding 'topaz/commands/coordinates_to_boxes.py' 2026-05-09T07:25:01,213 adding 'topaz/commands/coordinates_to_eman2_json.py' 2026-05-09T07:25:01,214 adding 'topaz/commands/coordinates_to_star.py' 2026-05-09T07:25:01,216 adding 'topaz/commands/denoise.py' 2026-05-09T07:25:01,218 adding 'topaz/commands/denoise3d.py' 2026-05-09T07:25:01,219 adding 'topaz/commands/downsample.py' 2026-05-09T07:25:01,220 adding 'topaz/commands/extract.py' 2026-05-09T07:25:01,222 adding 'topaz/commands/gui.py' 2026-05-09T07:25:01,223 adding 'topaz/commands/normalize.py' 2026-05-09T07:25:01,224 adding 'topaz/commands/particle_stack.py' 2026-05-09T07:25:01,225 adding 'topaz/commands/precision_recall_curve.py' 2026-05-09T07:25:01,227 adding 'topaz/commands/preprocess.py' 2026-05-09T07:25:01,228 adding 'topaz/commands/scale_coordinates.py' 2026-05-09T07:25:01,229 adding 'topaz/commands/segment.py' 2026-05-09T07:25:01,230 adding 'topaz/commands/split.py' 2026-05-09T07:25:01,231 adding 'topaz/commands/star_particles_threshold.py' 2026-05-09T07:25:01,233 adding 'topaz/commands/star_to_coordinates.py' 2026-05-09T07:25:01,234 adding 'topaz/commands/train.py' 2026-05-09T07:25:01,236 adding 'topaz/commands/train_test_split.py' 2026-05-09T07:25:01,237 adding 'topaz/denoising/__init__.py' 2026-05-09T07:25:01,240 adding 'topaz/denoising/datasets.py' 2026-05-09T07:25:01,242 adding 'topaz/denoising/models.py' 2026-05-09T07:25:01,296 adding 'topaz/gui/topaz.html' 2026-05-09T07:25:01,301 adding 'topaz/model/__init__.py' 2026-05-09T07:25:01,303 adding 'topaz/model/classifier.py' 2026-05-09T07:25:01,304 adding 'topaz/model/factory.py' 2026-05-09T07:25:01,305 adding 'topaz/model/generative.py' 2026-05-09T07:25:01,307 adding 'topaz/model/utils.py' 2026-05-09T07:25:01,309 adding 'topaz/model/features/__init__.py' 2026-05-09T07:25:01,310 adding 'topaz/model/features/basic.py' 2026-05-09T07:25:01,312 adding 'topaz/model/features/densenet.py' 2026-05-09T07:25:01,313 adding 'topaz/model/features/msnet.py' 2026-05-09T07:25:01,315 adding 'topaz/model/features/resnet.py' 2026-05-09T07:25:01,318 adding 'topaz/pretrained/denoise/affine_L1_v0.2.2.sav' 2026-05-09T07:25:01,657 adding 'topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav' 2026-05-09T07:25:03,443 adding 'topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav' 2026-05-09T07:25:05,281 adding 'topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav' 2026-05-09T07:25:05,989 adding 'topaz/pretrained/denoise/unet_L2_v0.2.1.sav' 2026-05-09T07:25:06,692 adding 'topaz/pretrained/denoise/unet_L2_v0.2.2.sav' 2026-05-09T07:25:07,119 adding 'topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav' 2026-05-09T07:25:07,414 adding 'topaz/pretrained/detector/resnet16_u32.sav' 2026-05-09T07:25:08,536 adding 'topaz/pretrained/detector/resnet16_u64.sav' 2026-05-09T07:25:08,781 adding 'topaz/pretrained/detector/resnet8_u32.sav' 2026-05-09T07:25:09,579 adding 'topaz/pretrained/detector/resnet8_u64.sav' 2026-05-09T07:25:09,613 adding 'topaz/transform/__init__.py' 2026-05-09T07:25:09,615 adding 'topaz/transform/scaled_gaussian_mixture.py' 2026-05-09T07:25:09,617 adding 'topaz/utils/__init__.py' 2026-05-09T07:25:09,618 adding 'topaz/utils/conversions.py' 2026-05-09T07:25:09,621 adding 'topaz/utils/files.py' 2026-05-09T07:25:09,622 adding 'topaz/utils/image.py' 2026-05-09T07:25:09,624 adding 'topaz/utils/picks.py' 2026-05-09T07:25:09,625 adding 'topaz/utils/printing.py' 2026-05-09T07:25:09,627 adding 'topaz/utils/star.py' 2026-05-09T07:25:09,629 adding 'topaz/utils/data/__init__.py' 2026-05-09T07:25:09,630 adding 'topaz/utils/data/coordinates.py' 2026-05-09T07:25:09,632 adding 'topaz/utils/data/loader.py' 2026-05-09T07:25:09,634 adding 'topaz/utils/data/memory_mapped_data.py' 2026-05-09T07:25:09,635 adding 'topaz/utils/data/partition.py' 2026-05-09T07:25:09,638 adding 'topaz/utils/data/sampler.py' 2026-05-09T07:25:09,639 adding 'topaz/utils/data/train_test_split_micrographs.py' 2026-05-09T07:25:09,647 adding 'topaz_em-0.3.19.dist-info/licenses/LICENSE' 2026-05-09T07:25:09,650 adding 'topaz_em-0.3.19.dist-info/METADATA' 2026-05-09T07:25:09,652 adding 'topaz_em-0.3.19.dist-info/WHEEL' 2026-05-09T07:25:09,653 adding 'topaz_em-0.3.19.dist-info/entry_points.txt' 2026-05-09T07:25:09,654 adding 'topaz_em-0.3.19.dist-info/top_level.txt' 2026-05-09T07:25:09,656 adding 'topaz_em-0.3.19.dist-info/RECORD' 2026-05-09T07:25:10,130 removing build/bdist.linux-armv7l/wheel 2026-05-09T07:25:10,275 Building wheel for topaz-em (pyproject.toml): finished with status 'done' 2026-05-09T07:25:11,276 Created wheel for topaz-em: filename=topaz_em-0.3.19-py3-none-any.whl size=48212999 sha256=9a22f298b41e2c9fb752d300538d4d5e027a02457307839bc9f7528e857eeefb 2026-05-09T07:25:11,277 Stored in directory: /tmp/pip-ephem-wheel-cache-24zct6rl/wheels/38/8e/d8/ad221e902e7d444b77b22aab22fd9be1aa86a231492f2f0236 2026-05-09T07:25:11,311 Successfully built topaz-em 2026-05-09T07:25:12,443 Removed build tracker: '/tmp/pip-build-tracker-5cyn8xor'