2026-05-11T12:21:05,511 Created temporary directory: /tmp/pip-ephem-wheel-cache-y9c6i9lz 2026-05-11T12:21:05,513 Created temporary directory: /tmp/pip-build-tracker-s8yzymhd 2026-05-11T12:21:05,513 Initialized build tracking at /tmp/pip-build-tracker-s8yzymhd 2026-05-11T12:21:05,514 Created build tracker: /tmp/pip-build-tracker-s8yzymhd 2026-05-11T12:21:05,514 Entered build tracker: /tmp/pip-build-tracker-s8yzymhd 2026-05-11T12:21:05,515 Created temporary directory: /tmp/pip-wheel-atgq3w64 2026-05-11T12:21:05,518 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-11T12:21:05,521 Created temporary directory: /tmp/pip-ephem-wheel-cache-1277tb42 2026-05-11T12:21:05,545 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-11T12:21:05,548 2 location(s) to search for versions of omicverse-skills: 2026-05-11T12:21:05,548 * https://pypi.org/simple/omicverse-skills/ 2026-05-11T12:21:05,548 * https://www.piwheels.org/simple/omicverse-skills/ 2026-05-11T12:21:05,549 Fetching project page and analyzing links: https://pypi.org/simple/omicverse-skills/ 2026-05-11T12:21:05,550 Getting page https://pypi.org/simple/omicverse-skills/ 2026-05-11T12:21:05,551 Found index url https://pypi.org/simple 2026-05-11T12:21:05,774 Fetched page https://pypi.org/simple/omicverse-skills/ as application/vnd.pypi.simple.v1+json 2026-05-11T12:21:05,777 Skipping link: No binaries permitted for omicverse-skills: https://files.pythonhosted.org/packages/9c/ab/10f05fbb75a503681ea79a69db4fc9b4a51e9efe8cc3d8c7024860e788e4/omicverse_skills-0.1.0-py3-none-any.whl (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-05-11T12:21:05,778 Found link https://files.pythonhosted.org/packages/9f/cd/33af9075cdeb5cda8422702a12ee500a3e67dcdf8e19753ae9875c05d3f5/omicverse_skills-0.1.0.tar.gz (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8), version: 0.1.0 2026-05-11T12:21:05,779 Skipping link: No binaries permitted for omicverse-skills: https://files.pythonhosted.org/packages/b5/e0/5bf909c4007540eedc84e255a375fcdd700902a6020e9595b786f83b9729/omicverse_skills-0.2.0-py3-none-any.whl (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-05-11T12:21:05,780 Found link https://files.pythonhosted.org/packages/76/a7/d168b8fbf3bb2d3ce9cbd810f1fd411f5aa20bf7378ac222eb086b9fcbad/omicverse_skills-0.2.0.tar.gz (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8), version: 0.2.0 2026-05-11T12:21:05,780 Skipping link: No binaries permitted for omicverse-skills: https://files.pythonhosted.org/packages/5a/3e/16b2f9b93a5b791bb0dc47ab28f9b30cb0557b49b2170d082520e47245a5/omicverse_skills-0.3.0-py3-none-any.whl (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-05-11T12:21:05,781 Found link https://files.pythonhosted.org/packages/9e/64/f2ab551c6dd9139e3f0f64fd46de478b6792eb3d599b39b409c6edc1a355/omicverse_skills-0.3.0.tar.gz (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8), version: 0.3.0 2026-05-11T12:21:05,782 Skipping link: No binaries permitted for omicverse-skills: https://files.pythonhosted.org/packages/06/bc/447bd7732bd8fac04d2d82ff3f4ad41c2c94fc303017bf1627ec2a175f8d/omicverse_skills-0.3.1-py3-none-any.whl (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-05-11T12:21:05,783 Found link https://files.pythonhosted.org/packages/04/25/3513f638792ab039242af4c837c7d2460246a9f141131eafbc43102af99c/omicverse_skills-0.3.1.tar.gz (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8), version: 0.3.1 2026-05-11T12:21:05,784 Fetching project page and analyzing links: https://www.piwheels.org/simple/omicverse-skills/ 2026-05-11T12:21:05,785 Getting page https://www.piwheels.org/simple/omicverse-skills/ 2026-05-11T12:21:05,786 Found index url https://www.piwheels.org/simple 2026-05-11T12:21:05,954 Fetched page https://www.piwheels.org/simple/omicverse-skills/ as text/html 2026-05-11T12:21:05,956 Skipping link: No binaries permitted for omicverse-skills: https://www.piwheels.org/simple/omicverse-skills/omicverse_skills-0.3.0-py3-none-any.whl#sha256=b0577e1cf0832ccd3f5e200c360c95a133cd1378494b57dc9d93960e587166dc (from https://www.piwheels.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-05-11T12:21:05,957 Skipping link: No binaries permitted for omicverse-skills: https://archive1.piwheels.org/simple/omicverse-skills/omicverse_skills-0.2.0-py3-none-any.whl#sha256=87d48d87edcc650a3962c213a91f329ecdcef1dd5c5023c0bd63d801cc66cc74 (from https://www.piwheels.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-05-11T12:21:05,957 Skipping link: No binaries permitted for omicverse-skills: https://archive1.piwheels.org/simple/omicverse-skills/omicverse_skills-0.1.0-py3-none-any.whl#sha256=e437d750b17759f8e44d5df94ae4e8fbe3f4b9740155e3a6af36e9fba9bf12ae (from https://www.piwheels.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-05-11T12:21:05,958 Skipping link: not a file: https://www.piwheels.org/simple/omicverse-skills/ 2026-05-11T12:21:05,959 Skipping link: not a file: https://pypi.org/simple/omicverse-skills/ 2026-05-11T12:21:05,979 Given no hashes to check 1 links for project 'omicverse-skills': discarding no candidates 2026-05-11T12:21:05,999 Collecting omicverse-skills==0.3.1 2026-05-11T12:21:06,001 Created temporary directory: /tmp/pip-unpack-0uiw796g 2026-05-11T12:21:06,229 Downloading omicverse_skills-0.3.1.tar.gz (374 kB) 2026-05-11T12:21:06,886 Added omicverse-skills==0.3.1 from https://files.pythonhosted.org/packages/04/25/3513f638792ab039242af4c837c7d2460246a9f141131eafbc43102af99c/omicverse_skills-0.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-s8yzymhd' 2026-05-11T12:21:06,891 Created temporary directory: /tmp/pip-build-env-kjrtgaf5 2026-05-11T12:21:06,895 Installing build dependencies: started 2026-05-11T12:21:06,897 Running command pip subprocess to install build dependencies 2026-05-11T12:21:08,024 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-11T12:21:08,457 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-11T12:21:08,480 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-11T12:21:10,252 Collecting setuptools>=67 2026-05-11T12:21:10,333 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-11T12:21:10,608 Collecting wheel 2026-05-11T12:21:10,622 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-11T12:21:10,809 Collecting packaging>=24.0 2026-05-11T12:21:10,826 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-11T12:21:13,811 Installing collected packages: setuptools, packaging, wheel 2026-05-11T12:21:17,521 Creating /tmp/pip-build-env-kjrtgaf5/overlay/local/bin 2026-05-11T12:21:17,523 changing mode of /tmp/pip-build-env-kjrtgaf5/overlay/local/bin/wheel to 755 2026-05-11T12:21:17,545 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-05-11T12:21:17,824 Installing build dependencies: finished with status 'done' 2026-05-11T12:21:17,831 Getting requirements to build wheel: started 2026-05-11T12:21:17,833 Running command Getting requirements to build wheel 2026-05-11T12:21:18,564 running egg_info 2026-05-11T12:21:18,571 writing src/omicverse_skills.egg-info/PKG-INFO 2026-05-11T12:21:18,574 writing dependency_links to src/omicverse_skills.egg-info/dependency_links.txt 2026-05-11T12:21:18,576 writing entry points to src/omicverse_skills.egg-info/entry_points.txt 2026-05-11T12:21:18,578 writing top-level names to src/omicverse_skills.egg-info/top_level.txt 2026-05-11T12:21:18,836 reading manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-05-11T12:21:18,850 reading manifest template 'MANIFEST.in' 2026-05-11T12:21:19,116 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-05-11T12:21:19,119 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-05-11T12:21:19,121 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-05-11T12:21:19,121 adding license file 'LICENSE' 2026-05-11T12:21:19,138 writing manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-05-11T12:21:19,236 Getting requirements to build wheel: finished with status 'done' 2026-05-11T12:21:19,240 Created temporary directory: /tmp/pip-modern-metadata-efv910cm 2026-05-11T12:21:19,242 Preparing metadata (pyproject.toml): started 2026-05-11T12:21:19,243 Running command Preparing metadata (pyproject.toml) 2026-05-11T12:21:19,906 running dist_info 2026-05-11T12:21:19,917 creating /tmp/pip-modern-metadata-efv910cm/omicverse_skills.egg-info 2026-05-11T12:21:19,920 writing /tmp/pip-modern-metadata-efv910cm/omicverse_skills.egg-info/PKG-INFO 2026-05-11T12:21:19,923 writing dependency_links to /tmp/pip-modern-metadata-efv910cm/omicverse_skills.egg-info/dependency_links.txt 2026-05-11T12:21:19,925 writing entry points to /tmp/pip-modern-metadata-efv910cm/omicverse_skills.egg-info/entry_points.txt 2026-05-11T12:21:19,927 writing top-level names to /tmp/pip-modern-metadata-efv910cm/omicverse_skills.egg-info/top_level.txt 2026-05-11T12:21:19,929 writing manifest file '/tmp/pip-modern-metadata-efv910cm/omicverse_skills.egg-info/SOURCES.txt' 2026-05-11T12:21:20,122 reading manifest file '/tmp/pip-modern-metadata-efv910cm/omicverse_skills.egg-info/SOURCES.txt' 2026-05-11T12:21:20,124 reading manifest template 'MANIFEST.in' 2026-05-11T12:21:20,388 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-05-11T12:21:20,390 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-05-11T12:21:20,392 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-05-11T12:21:20,392 adding license file 'LICENSE' 2026-05-11T12:21:20,406 writing manifest file '/tmp/pip-modern-metadata-efv910cm/omicverse_skills.egg-info/SOURCES.txt' 2026-05-11T12:21:20,408 creating '/tmp/pip-modern-metadata-efv910cm/omicverse_skills-0.3.1.dist-info' 2026-05-11T12:21:20,534 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-11T12:21:20,540 Source in /tmp/pip-wheel-atgq3w64/omicverse-skills_90eee38746964a8f888032c45429646d has version 0.3.1, which satisfies requirement omicverse-skills==0.3.1 from https://files.pythonhosted.org/packages/04/25/3513f638792ab039242af4c837c7d2460246a9f141131eafbc43102af99c/omicverse_skills-0.3.1.tar.gz 2026-05-11T12:21:20,541 Removed omicverse-skills==0.3.1 from https://files.pythonhosted.org/packages/04/25/3513f638792ab039242af4c837c7d2460246a9f141131eafbc43102af99c/omicverse_skills-0.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-s8yzymhd' 2026-05-11T12:21:20,547 Created temporary directory: /tmp/pip-unpack-vc2ts0nc 2026-05-11T12:21:20,548 Building wheels for collected packages: omicverse-skills 2026-05-11T12:21:20,553 Created temporary directory: /tmp/pip-wheel-qaddfvhx 2026-05-11T12:21:20,553 Destination directory: /tmp/pip-wheel-qaddfvhx 2026-05-11T12:21:20,556 Building wheel for omicverse-skills (pyproject.toml): started 2026-05-11T12:21:20,557 Running command Building wheel for omicverse-skills (pyproject.toml) 2026-05-11T12:21:21,212 running bdist_wheel 2026-05-11T12:21:21,229 running build 2026-05-11T12:21:21,230 running build_py 2026-05-11T12:21:21,236 creating build/lib/omicverse_skills 2026-05-11T12:21:21,238 copying src/omicverse_skills/__init__.py -> build/lib/omicverse_skills 2026-05-11T12:21:21,240 copying src/omicverse_skills/registry.py -> build/lib/omicverse_skills 2026-05-11T12:21:21,242 copying src/omicverse_skills/notebook_index.py -> build/lib/omicverse_skills 2026-05-11T12:21:21,272 creating build/lib/omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-05-11T12:21:21,274 copying src/omicverse_skills/skills/single-cell-differential-abundance/scripts/dct_smoke.py -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-05-11T12:21:21,280 creating build/lib/omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-05-11T12:21:21,282 copying src/omicverse_skills/skills/single-cell-rna-velocity/scripts/graphvelo_smoke.py -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-05-11T12:21:21,285 creating build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-05-11T12:21:21,287 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts/cnmf_smoke.py -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-05-11T12:21:21,291 creating build/lib/omicverse_skills/skills/single-cell-scenic/scripts 2026-05-11T12:21:21,292 copying src/omicverse_skills/skills/single-cell-scenic/scripts/scenic_smoke.py -> build/lib/omicverse_skills/skills/single-cell-scenic/scripts 2026-05-11T12:21:21,296 creating build/lib/omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-05-11T12:21:21,298 copying src/omicverse_skills/skills/single-cell-clustering-backends/scripts/clustering_smoke.py -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-05-11T12:21:21,303 creating build/lib/omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-05-11T12:21:21,305 copying src/omicverse_skills/skills/single-cell-trajectory-inference/scripts/trajectory_smoke.py -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-05-11T12:21:21,308 creating build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-05-11T12:21:21,310 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts/lda_smoke.py -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-05-11T12:21:21,316 creating build/lib/omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-05-11T12:21:21,317 copying src/omicverse_skills/skills/single-cell-cytotrace2/scripts/cytotrace2_smoke.py -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-05-11T12:21:21,321 creating build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-05-11T12:21:21,322 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts/cpdb_smoke.py -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-05-11T12:21:21,326 creating build/lib/omicverse_skills/skills/single-cell-differential-expression/scripts 2026-05-11T12:21:21,328 copying src/omicverse_skills/skills/single-cell-differential-expression/scripts/deg_smoke.py -> build/lib/omicverse_skills/skills/single-cell-differential-expression/scripts 2026-05-11T12:21:21,332 creating build/lib/omicverse_skills/skills/single-cell-batch-integration/scripts 2026-05-11T12:21:21,333 copying src/omicverse_skills/skills/single-cell-batch-integration/scripts/batch_integration_smoke.py -> build/lib/omicverse_skills/skills/single-cell-batch-integration/scripts 2026-05-11T12:21:21,345 running egg_info 2026-05-11T12:21:21,354 writing src/omicverse_skills.egg-info/PKG-INFO 2026-05-11T12:21:21,357 writing dependency_links to src/omicverse_skills.egg-info/dependency_links.txt 2026-05-11T12:21:21,359 writing entry points to src/omicverse_skills.egg-info/entry_points.txt 2026-05-11T12:21:21,361 writing top-level names to src/omicverse_skills.egg-info/top_level.txt 2026-05-11T12:21:21,540 reading manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-05-11T12:21:21,554 reading manifest template 'MANIFEST.in' 2026-05-11T12:21:21,814 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-05-11T12:21:21,817 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-05-11T12:21:21,819 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-05-11T12:21:21,820 adding license file 'LICENSE' 2026-05-11T12:21:21,837 writing manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-05-11T12:21:21,983 copying src/omicverse_skills/notebook_index.json -> build/lib/omicverse_skills 2026-05-11T12:21:21,986 creating build/lib/omicverse_skills/skills/single-cell-metatime-annotation 2026-05-11T12:21:21,987 copying src/omicverse_skills/skills/single-cell-metatime-annotation/reference.md -> build/lib/omicverse_skills/skills/single-cell-metatime-annotation 2026-05-11T12:21:21,990 copying src/omicverse_skills/skills/single-cell-metatime-annotation/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-metatime-annotation 2026-05-11T12:21:21,992 creating build/lib/omicverse_skills/skills/microbiome-meta-analysis 2026-05-11T12:21:21,993 copying src/omicverse_skills/skills/microbiome-meta-analysis/reference.md -> build/lib/omicverse_skills/skills/microbiome-meta-analysis 2026-05-11T12:21:21,996 copying src/omicverse_skills/skills/microbiome-meta-analysis/SKILL.md -> build/lib/omicverse_skills/skills/microbiome-meta-analysis 2026-05-11T12:21:21,999 creating build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory 2026-05-11T12:21:22,000 copying src/omicverse_skills/skills/single-cell-monocle2-trajectory/reference.md -> build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory 2026-05-11T12:21:22,003 copying src/omicverse_skills/skills/single-cell-monocle2-trajectory/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory 2026-05-11T12:21:22,005 creating build/lib/omicverse_skills/skills/single-cell-cellrank-fate 2026-05-11T12:21:22,006 copying src/omicverse_skills/skills/single-cell-cellrank-fate/reference.md -> build/lib/omicverse_skills/skills/single-cell-cellrank-fate 2026-05-11T12:21:22,009 copying src/omicverse_skills/skills/single-cell-cellrank-fate/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cellrank-fate 2026-05-11T12:21:22,012 copying src/omicverse_skills/skills/single-cell-differential-abundance/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance 2026-05-11T12:21:22,014 creating build/lib/omicverse_skills/skills/bulk-metabol-multivariate 2026-05-11T12:21:22,015 copying src/omicverse_skills/skills/bulk-metabol-multivariate/reference.md -> build/lib/omicverse_skills/skills/bulk-metabol-multivariate 2026-05-11T12:21:22,017 copying src/omicverse_skills/skills/bulk-metabol-multivariate/SKILL.md -> build/lib/omicverse_skills/skills/bulk-metabol-multivariate 2026-05-11T12:21:22,020 creating build/lib/omicverse_skills/skills/single-cell-sctour-trajectory 2026-05-11T12:21:22,021 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory 2026-05-11T12:21:22,024 creating build/lib/omicverse_skills/skills/bulk-deseq2-analysis 2026-05-11T12:21:22,025 copying src/omicverse_skills/skills/bulk-deseq2-analysis/reference.md -> build/lib/omicverse_skills/skills/bulk-deseq2-analysis 2026-05-11T12:21:22,027 copying src/omicverse_skills/skills/bulk-deseq2-analysis/SKILL.md -> build/lib/omicverse_skills/skills/bulk-deseq2-analysis 2026-05-11T12:21:22,029 creating build/lib/omicverse_skills/skills/bulk-celltype-deconvolution 2026-05-11T12:21:22,030 copying src/omicverse_skills/skills/bulk-celltype-deconvolution/reference.md -> build/lib/omicverse_skills/skills/bulk-celltype-deconvolution 2026-05-11T12:21:22,033 copying src/omicverse_skills/skills/bulk-celltype-deconvolution/SKILL.md -> build/lib/omicverse_skills/skills/bulk-celltype-deconvolution 2026-05-11T12:21:22,036 creating build/lib/omicverse_skills/skills/bulk-deg-analysis 2026-05-11T12:21:22,037 copying src/omicverse_skills/skills/bulk-deg-analysis/reference.md -> build/lib/omicverse_skills/skills/bulk-deg-analysis 2026-05-11T12:21:22,039 copying src/omicverse_skills/skills/bulk-deg-analysis/SKILL.md -> build/lib/omicverse_skills/skills/bulk-deg-analysis 2026-05-11T12:21:22,041 creating build/lib/omicverse_skills/skills/gsea-enrichment 2026-05-11T12:21:22,042 copying src/omicverse_skills/skills/gsea-enrichment/SKILL.md -> build/lib/omicverse_skills/skills/gsea-enrichment 2026-05-11T12:21:22,045 creating build/lib/omicverse_skills/skills/data-stats-analysis 2026-05-11T12:21:22,046 copying src/omicverse_skills/skills/data-stats-analysis/SKILL.md -> build/lib/omicverse_skills/skills/data-stats-analysis 2026-05-11T12:21:22,050 copying src/omicverse_skills/skills/single-cell-rna-velocity/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity 2026-05-11T12:21:22,052 creating build/lib/omicverse_skills/skills/single-multiomics 2026-05-11T12:21:22,053 copying src/omicverse_skills/skills/single-multiomics/reference.md -> build/lib/omicverse_skills/skills/single-multiomics 2026-05-11T12:21:22,056 copying src/omicverse_skills/skills/single-multiomics/SKILL.md -> build/lib/omicverse_skills/skills/single-multiomics 2026-05-11T12:21:22,058 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery 2026-05-11T12:21:22,061 creating build/lib/omicverse_skills/skills/single-cell-kb-alignment 2026-05-11T12:21:22,062 copying src/omicverse_skills/skills/single-cell-kb-alignment/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment 2026-05-11T12:21:22,065 creating build/lib/omicverse_skills/skills/single-popv-annotation 2026-05-11T12:21:22,066 copying src/omicverse_skills/skills/single-popv-annotation/reference.md -> build/lib/omicverse_skills/skills/single-popv-annotation 2026-05-11T12:21:22,069 copying src/omicverse_skills/skills/single-popv-annotation/SKILL.md -> build/lib/omicverse_skills/skills/single-popv-annotation 2026-05-11T12:21:22,072 copying src/omicverse_skills/skills/single-cell-scenic/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-scenic 2026-05-11T12:21:22,074 creating build/lib/omicverse_skills/skills/reference-label-transfer 2026-05-11T12:21:22,076 copying src/omicverse_skills/skills/reference-label-transfer/SKILL.md -> build/lib/omicverse_skills/skills/reference-label-transfer 2026-05-11T12:21:22,079 copying src/omicverse_skills/skills/single-cell-clustering-backends/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends 2026-05-11T12:21:22,082 creating build/lib/omicverse_skills/skills/data-io-loading 2026-05-11T12:21:22,083 copying src/omicverse_skills/skills/data-io-loading/reference.md -> build/lib/omicverse_skills/skills/data-io-loading 2026-05-11T12:21:22,085 copying src/omicverse_skills/skills/data-io-loading/SKILL.md -> build/lib/omicverse_skills/skills/data-io-loading 2026-05-11T12:21:22,088 creating build/lib/omicverse_skills/skills/microbiome-phylogeny 2026-05-11T12:21:22,089 copying src/omicverse_skills/skills/microbiome-phylogeny/reference.md -> build/lib/omicverse_skills/skills/microbiome-phylogeny 2026-05-11T12:21:22,092 copying src/omicverse_skills/skills/microbiome-phylogeny/SKILL.md -> build/lib/omicverse_skills/skills/microbiome-phylogeny 2026-05-11T12:21:22,094 creating build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-05-11T12:21:22,095 copying src/omicverse_skills/skills/microbiome-16s-amplicon-dada2/reference.md -> build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-05-11T12:21:22,098 copying src/omicverse_skills/skills/microbiome-16s-amplicon-dada2/SKILL.md -> build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-05-11T12:21:22,101 creating build/lib/omicverse_skills/skills/plotting-visualization 2026-05-11T12:21:22,103 copying src/omicverse_skills/skills/plotting-visualization/reference.md -> build/lib/omicverse_skills/skills/plotting-visualization 2026-05-11T12:21:22,105 copying src/omicverse_skills/skills/plotting-visualization/SKILL.md -> build/lib/omicverse_skills/skills/plotting-visualization 2026-05-11T12:21:22,108 copying src/omicverse_skills/skills/single-cell-trajectory-inference/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference 2026-05-11T12:21:22,111 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering 2026-05-11T12:21:22,114 creating build/lib/omicverse_skills/skills/spatial-tutorials 2026-05-11T12:21:22,115 copying src/omicverse_skills/skills/spatial-tutorials/reference.md -> build/lib/omicverse_skills/skills/spatial-tutorials 2026-05-11T12:21:22,118 copying src/omicverse_skills/skills/spatial-tutorials/SKILL.md -> build/lib/omicverse_skills/skills/spatial-tutorials 2026-05-11T12:21:22,121 creating build/lib/omicverse_skills/skills/cross-modal-celltype-transfer 2026-05-11T12:21:22,122 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/SKILL.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer 2026-05-11T12:21:22,125 creating build/lib/omicverse_skills/skills/datasets-loading 2026-05-11T12:21:22,126 copying src/omicverse_skills/skills/datasets-loading/reference.md -> build/lib/omicverse_skills/skills/datasets-loading 2026-05-11T12:21:22,128 copying src/omicverse_skills/skills/datasets-loading/SKILL.md -> build/lib/omicverse_skills/skills/datasets-loading 2026-05-11T12:21:22,131 creating build/lib/omicverse_skills/skills/single-downstream-analysis 2026-05-11T12:21:22,132 copying src/omicverse_skills/skills/single-downstream-analysis/reference.md -> build/lib/omicverse_skills/skills/single-downstream-analysis 2026-05-11T12:21:22,135 copying src/omicverse_skills/skills/single-downstream-analysis/SKILL.md -> build/lib/omicverse_skills/skills/single-downstream-analysis 2026-05-11T12:21:22,138 creating build/lib/omicverse_skills/skills/data-viz-plots 2026-05-11T12:21:22,139 copying src/omicverse_skills/skills/data-viz-plots/SKILL.md -> build/lib/omicverse_skills/skills/data-viz-plots 2026-05-11T12:21:22,142 creating build/lib/omicverse_skills/skills/data-export-excel 2026-05-11T12:21:22,143 copying src/omicverse_skills/skills/data-export-excel/SKILL.md -> build/lib/omicverse_skills/skills/data-export-excel 2026-05-11T12:21:22,146 creating build/lib/omicverse_skills/skills/single-cell-liana-communication 2026-05-11T12:21:22,147 copying src/omicverse_skills/skills/single-cell-liana-communication/reference.md -> build/lib/omicverse_skills/skills/single-cell-liana-communication 2026-05-11T12:21:22,150 copying src/omicverse_skills/skills/single-cell-liana-communication/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-liana-communication 2026-05-11T12:21:22,152 creating build/lib/omicverse_skills/skills/bulk-fastq-quantification 2026-05-11T12:21:22,153 copying src/omicverse_skills/skills/bulk-fastq-quantification/reference.md -> build/lib/omicverse_skills/skills/bulk-fastq-quantification 2026-05-11T12:21:22,156 copying src/omicverse_skills/skills/bulk-fastq-quantification/SKILL.md -> build/lib/omicverse_skills/skills/bulk-fastq-quantification 2026-05-11T12:21:22,159 creating build/lib/omicverse_skills/skills/tcga-preprocessing 2026-05-11T12:21:22,160 copying src/omicverse_skills/skills/tcga-preprocessing/reference.md -> build/lib/omicverse_skills/skills/tcga-preprocessing 2026-05-11T12:21:22,163 copying src/omicverse_skills/skills/tcga-preprocessing/SKILL.md -> build/lib/omicverse_skills/skills/tcga-preprocessing 2026-05-11T12:21:22,166 creating build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-05-11T12:21:22,167 copying src/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/reference.md -> build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-05-11T12:21:22,171 copying src/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/SKILL.md -> build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-05-11T12:21:22,174 copying src/omicverse_skills/skills/single-cell-cytotrace2/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2 2026-05-11T12:21:22,177 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication 2026-05-11T12:21:22,180 creating build/lib/omicverse_skills/skills/data-export-pdf 2026-05-11T12:21:22,181 copying src/omicverse_skills/skills/data-export-pdf/SKILL.md -> build/lib/omicverse_skills/skills/data-export-pdf 2026-05-11T12:21:22,183 creating build/lib/omicverse_skills/skills/single-cell-foundation-model 2026-05-11T12:21:22,184 copying src/omicverse_skills/skills/single-cell-foundation-model/reference.md -> build/lib/omicverse_skills/skills/single-cell-foundation-model 2026-05-11T12:21:22,187 copying src/omicverse_skills/skills/single-cell-foundation-model/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-foundation-model 2026-05-11T12:21:22,189 creating build/lib/omicverse_skills/skills/bulk-to-single-deconvolution 2026-05-11T12:21:22,190 copying src/omicverse_skills/skills/bulk-to-single-deconvolution/reference.md -> build/lib/omicverse_skills/skills/bulk-to-single-deconvolution 2026-05-11T12:21:22,193 copying src/omicverse_skills/skills/bulk-to-single-deconvolution/SKILL.md -> build/lib/omicverse_skills/skills/bulk-to-single-deconvolution 2026-05-11T12:21:22,195 creating build/lib/omicverse_skills/skills/bulk-wgcna-analysis 2026-05-11T12:21:22,196 copying src/omicverse_skills/skills/bulk-wgcna-analysis/reference.md -> build/lib/omicverse_skills/skills/bulk-wgcna-analysis 2026-05-11T12:21:22,199 copying src/omicverse_skills/skills/bulk-wgcna-analysis/SKILL.md -> build/lib/omicverse_skills/skills/bulk-wgcna-analysis 2026-05-11T12:21:22,202 creating build/lib/omicverse_skills/skills/bulk-trajblend-interpolation 2026-05-11T12:21:22,203 copying src/omicverse_skills/skills/bulk-trajblend-interpolation/reference.md -> build/lib/omicverse_skills/skills/bulk-trajblend-interpolation 2026-05-11T12:21:22,205 copying src/omicverse_skills/skills/bulk-trajblend-interpolation/SKILL.md -> build/lib/omicverse_skills/skills/bulk-trajblend-interpolation 2026-05-11T12:21:22,208 copying src/omicverse_skills/skills/single-cell-differential-expression/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression 2026-05-11T12:21:22,211 creating build/lib/omicverse_skills/skills/single-cell-annotation 2026-05-11T12:21:22,212 copying src/omicverse_skills/skills/single-cell-annotation/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-annotation 2026-05-11T12:21:22,215 creating build/lib/omicverse_skills/skills/data-transform 2026-05-11T12:21:22,216 copying src/omicverse_skills/skills/data-transform/SKILL.md -> build/lib/omicverse_skills/skills/data-transform 2026-05-11T12:21:22,220 copying src/omicverse_skills/skills/single-cell-batch-integration/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration 2026-05-11T12:21:22,222 creating build/lib/omicverse_skills/skills/single-to-spatial-mapping 2026-05-11T12:21:22,223 copying src/omicverse_skills/skills/single-to-spatial-mapping/reference.md -> build/lib/omicverse_skills/skills/single-to-spatial-mapping 2026-05-11T12:21:22,226 copying src/omicverse_skills/skills/single-to-spatial-mapping/SKILL.md -> build/lib/omicverse_skills/skills/single-to-spatial-mapping 2026-05-11T12:21:22,229 creating build/lib/omicverse_skills/skills/single-cell-via-trajectory 2026-05-11T12:21:22,230 copying src/omicverse_skills/skills/single-cell-via-trajectory/reference.md -> build/lib/omicverse_skills/skills/single-cell-via-trajectory 2026-05-11T12:21:22,232 copying src/omicverse_skills/skills/single-cell-via-trajectory/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-via-trajectory 2026-05-11T12:21:22,236 creating build/lib/omicverse_skills/skills/micro-metabol-paired 2026-05-11T12:21:22,236 copying src/omicverse_skills/skills/micro-metabol-paired/reference.md -> build/lib/omicverse_skills/skills/micro-metabol-paired 2026-05-11T12:21:22,239 copying src/omicverse_skills/skills/micro-metabol-paired/SKILL.md -> build/lib/omicverse_skills/skills/micro-metabol-paired 2026-05-11T12:21:22,242 creating build/lib/omicverse_skills/skills/biocontext-knowledge 2026-05-11T12:21:22,243 copying src/omicverse_skills/skills/biocontext-knowledge/reference.md -> build/lib/omicverse_skills/skills/biocontext-knowledge 2026-05-11T12:21:22,245 copying src/omicverse_skills/skills/biocontext-knowledge/SKILL.md -> build/lib/omicverse_skills/skills/biocontext-knowledge 2026-05-11T12:21:22,248 creating build/lib/omicverse_skills/skills/single-cellfate-analysis 2026-05-11T12:21:22,249 copying src/omicverse_skills/skills/single-cellfate-analysis/reference.md -> build/lib/omicverse_skills/skills/single-cellfate-analysis 2026-05-11T12:21:22,252 copying src/omicverse_skills/skills/single-cellfate-analysis/SKILL.md -> build/lib/omicverse_skills/skills/single-cellfate-analysis 2026-05-11T12:21:22,254 creating build/lib/omicverse_skills/skills/microbiome-da-comparison 2026-05-11T12:21:22,255 copying src/omicverse_skills/skills/microbiome-da-comparison/reference.md -> build/lib/omicverse_skills/skills/microbiome-da-comparison 2026-05-11T12:21:22,258 copying src/omicverse_skills/skills/microbiome-da-comparison/SKILL.md -> build/lib/omicverse_skills/skills/microbiome-da-comparison 2026-05-11T12:21:22,260 creating build/lib/omicverse_skills/skills/bulk-combat-correction 2026-05-11T12:21:22,261 copying src/omicverse_skills/skills/bulk-combat-correction/reference.md -> build/lib/omicverse_skills/skills/bulk-combat-correction 2026-05-11T12:21:22,264 copying src/omicverse_skills/skills/bulk-combat-correction/SKILL.md -> build/lib/omicverse_skills/skills/bulk-combat-correction 2026-05-11T12:21:22,266 creating build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology 2026-05-11T12:21:22,267 copying src/omicverse_skills/skills/single-cell-cellmatch-ontology/reference.md -> build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology 2026-05-11T12:21:22,270 copying src/omicverse_skills/skills/single-cell-cellmatch-ontology/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology 2026-05-11T12:21:22,273 creating build/lib/omicverse_skills/skills/single-cell-cellvote-consensus 2026-05-11T12:21:22,274 copying src/omicverse_skills/skills/single-cell-cellvote-consensus/reference.md -> build/lib/omicverse_skills/skills/single-cell-cellvote-consensus 2026-05-11T12:21:22,276 copying src/omicverse_skills/skills/single-cell-cellvote-consensus/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cellvote-consensus 2026-05-11T12:21:22,279 creating build/lib/omicverse_skills/skills/bulk-metabol-preprocessing 2026-05-11T12:21:22,280 copying src/omicverse_skills/skills/bulk-metabol-preprocessing/reference.md -> build/lib/omicverse_skills/skills/bulk-metabol-preprocessing 2026-05-11T12:21:22,283 copying src/omicverse_skills/skills/bulk-metabol-preprocessing/SKILL.md -> build/lib/omicverse_skills/skills/bulk-metabol-preprocessing 2026-05-11T12:21:22,286 creating build/lib/omicverse_skills/skills/single-cell-preprocessing 2026-05-11T12:21:22,287 copying src/omicverse_skills/skills/single-cell-preprocessing/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing 2026-05-11T12:21:22,289 creating build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-05-11T12:21:22,290 copying src/omicverse_skills/skills/bulk-metabol-pathway-multifactor/reference.md -> build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-05-11T12:21:22,293 copying src/omicverse_skills/skills/bulk-metabol-pathway-multifactor/SKILL.md -> build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-05-11T12:21:22,297 creating build/lib/omicverse_skills/skills/bulk-stringdb-ppi 2026-05-11T12:21:22,298 copying src/omicverse_skills/skills/bulk-stringdb-ppi/reference.md -> build/lib/omicverse_skills/skills/bulk-stringdb-ppi 2026-05-11T12:21:22,301 copying src/omicverse_skills/skills/bulk-stringdb-ppi/SKILL.md -> build/lib/omicverse_skills/skills/bulk-stringdb-ppi 2026-05-11T12:21:22,303 creating build/lib/omicverse_skills/skills/single-cell-metatime-annotation/references 2026-05-11T12:21:22,304 copying src/omicverse_skills/skills/single-cell-metatime-annotation/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-metatime-annotation/references 2026-05-11T12:21:22,307 creating build/lib/omicverse_skills/skills/microbiome-meta-analysis/references 2026-05-11T12:21:22,308 copying src/omicverse_skills/skills/microbiome-meta-analysis/references/source-grounding.md -> build/lib/omicverse_skills/skills/microbiome-meta-analysis/references 2026-05-11T12:21:22,310 creating build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/references 2026-05-11T12:21:22,311 copying src/omicverse_skills/skills/single-cell-monocle2-trajectory/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/references 2026-05-11T12:21:22,314 creating build/lib/omicverse_skills/skills/single-cell-cellrank-fate/references 2026-05-11T12:21:22,315 copying src/omicverse_skills/skills/single-cell-cellrank-fate/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cellrank-fate/references 2026-05-11T12:21:22,318 creating build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-05-11T12:21:22,319 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-05-11T12:21:22,321 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-05-11T12:21:22,324 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-05-11T12:21:22,326 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-05-11T12:21:22,328 creating build/lib/omicverse_skills/skills/bulk-metabol-multivariate/references 2026-05-11T12:21:22,329 copying src/omicverse_skills/skills/bulk-metabol-multivariate/references/source-grounding.md -> build/lib/omicverse_skills/skills/bulk-metabol-multivariate/references 2026-05-11T12:21:22,332 creating build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-05-11T12:21:22,333 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-05-11T12:21:22,336 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-05-11T12:21:22,338 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-05-11T12:21:22,340 creating build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/references 2026-05-11T12:21:22,342 copying src/omicverse_skills/skills/bulk-celltype-deconvolution/references/source-grounding.md -> build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/references 2026-05-11T12:21:22,344 creating build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-05-11T12:21:22,346 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-05-11T12:21:22,348 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-05-11T12:21:22,350 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-05-11T12:21:22,353 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-05-11T12:21:22,355 creating build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-05-11T12:21:22,356 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-05-11T12:21:22,358 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-05-11T12:21:22,361 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-05-11T12:21:22,363 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-05-11T12:21:22,365 creating build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-05-11T12:21:22,366 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-05-11T12:21:22,368 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-05-11T12:21:22,371 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/workflow-selection.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-05-11T12:21:22,373 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-05-11T12:21:22,375 creating build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-05-11T12:21:22,376 copying src/omicverse_skills/skills/single-cell-scenic/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-05-11T12:21:22,379 copying src/omicverse_skills/skills/single-cell-scenic/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-05-11T12:21:22,381 copying src/omicverse_skills/skills/single-cell-scenic/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-05-11T12:21:22,383 copying src/omicverse_skills/skills/single-cell-scenic/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-05-11T12:21:22,386 creating build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-05-11T12:21:22,387 copying src/omicverse_skills/skills/reference-label-transfer/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-05-11T12:21:22,389 copying src/omicverse_skills/skills/reference-label-transfer/references/integration-method-selection.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-05-11T12:21:22,392 copying src/omicverse_skills/skills/reference-label-transfer/references/source-grounding.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-05-11T12:21:22,394 copying src/omicverse_skills/skills/reference-label-transfer/references/compatibility.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-05-11T12:21:22,396 creating build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-05-11T12:21:22,397 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-05-11T12:21:22,399 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-05-11T12:21:22,401 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-05-11T12:21:22,404 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-05-11T12:21:22,405 creating build/lib/omicverse_skills/skills/microbiome-phylogeny/references 2026-05-11T12:21:22,406 copying src/omicverse_skills/skills/microbiome-phylogeny/references/source-grounding.md -> build/lib/omicverse_skills/skills/microbiome-phylogeny/references 2026-05-11T12:21:22,409 creating build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/references 2026-05-11T12:21:22,410 copying src/omicverse_skills/skills/microbiome-16s-amplicon-dada2/references/source-grounding.md -> build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/references 2026-05-11T12:21:22,413 creating build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-05-11T12:21:22,414 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-05-11T12:21:22,416 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-05-11T12:21:22,419 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-05-11T12:21:22,421 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-05-11T12:21:22,423 creating build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-05-11T12:21:22,424 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-05-11T12:21:22,426 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-05-11T12:21:22,429 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-05-11T12:21:22,431 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-05-11T12:21:22,433 creating build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-05-11T12:21:22,435 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-05-11T12:21:22,437 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/integration-method-selection.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-05-11T12:21:22,439 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-grounding.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-05-11T12:21:22,442 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/compatibility.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-05-11T12:21:22,444 creating build/lib/omicverse_skills/skills/single-cell-liana-communication/references 2026-05-11T12:21:22,445 copying src/omicverse_skills/skills/single-cell-liana-communication/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-liana-communication/references 2026-05-11T12:21:22,447 creating build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references 2026-05-11T12:21:22,448 copying src/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references/source-grounding.md -> build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references 2026-05-11T12:21:22,451 creating build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-05-11T12:21:22,452 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-05-11T12:21:22,454 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-05-11T12:21:22,456 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-05-11T12:21:22,458 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-05-11T12:21:22,460 creating build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-05-11T12:21:22,461 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-05-11T12:21:22,463 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-05-11T12:21:22,465 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-05-11T12:21:22,467 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-05-11T12:21:22,469 creating build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-05-11T12:21:22,470 copying src/omicverse_skills/skills/single-cell-differential-expression/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-05-11T12:21:22,472 copying src/omicverse_skills/skills/single-cell-differential-expression/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-05-11T12:21:22,474 copying src/omicverse_skills/skills/single-cell-differential-expression/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-05-11T12:21:22,476 copying src/omicverse_skills/skills/single-cell-differential-expression/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-05-11T12:21:22,478 creating build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-05-11T12:21:22,479 copying src/omicverse_skills/skills/single-cell-annotation/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-05-11T12:21:22,482 copying src/omicverse_skills/skills/single-cell-annotation/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-05-11T12:21:22,484 copying src/omicverse_skills/skills/single-cell-annotation/references/backend-selection.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-05-11T12:21:22,486 copying src/omicverse_skills/skills/single-cell-annotation/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-05-11T12:21:22,488 creating build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-05-11T12:21:22,489 copying src/omicverse_skills/skills/single-cell-batch-integration/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-05-11T12:21:22,491 copying src/omicverse_skills/skills/single-cell-batch-integration/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-05-11T12:21:22,494 copying src/omicverse_skills/skills/single-cell-batch-integration/references/backend-selection.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-05-11T12:21:22,496 copying src/omicverse_skills/skills/single-cell-batch-integration/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-05-11T12:21:22,498 creating build/lib/omicverse_skills/skills/single-cell-via-trajectory/references 2026-05-11T12:21:22,499 copying src/omicverse_skills/skills/single-cell-via-trajectory/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-via-trajectory/references 2026-05-11T12:21:22,501 creating build/lib/omicverse_skills/skills/micro-metabol-paired/references 2026-05-11T12:21:22,502 copying src/omicverse_skills/skills/micro-metabol-paired/references/source-grounding.md -> build/lib/omicverse_skills/skills/micro-metabol-paired/references 2026-05-11T12:21:22,505 creating build/lib/omicverse_skills/skills/microbiome-da-comparison/references 2026-05-11T12:21:22,506 copying src/omicverse_skills/skills/microbiome-da-comparison/references/source-grounding.md -> build/lib/omicverse_skills/skills/microbiome-da-comparison/references 2026-05-11T12:21:22,508 creating build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/references 2026-05-11T12:21:22,509 copying src/omicverse_skills/skills/single-cell-cellmatch-ontology/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/references 2026-05-11T12:21:22,512 creating build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/references 2026-05-11T12:21:22,513 copying src/omicverse_skills/skills/single-cell-cellvote-consensus/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/references 2026-05-11T12:21:22,515 creating build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/references 2026-05-11T12:21:22,516 copying src/omicverse_skills/skills/bulk-metabol-preprocessing/references/source-grounding.md -> build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/references 2026-05-11T12:21:22,519 creating build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-05-11T12:21:22,520 copying src/omicverse_skills/skills/single-cell-preprocessing/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-05-11T12:21:22,522 copying src/omicverse_skills/skills/single-cell-preprocessing/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-05-11T12:21:22,525 copying src/omicverse_skills/skills/single-cell-preprocessing/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-05-11T12:21:22,527 copying src/omicverse_skills/skills/single-cell-preprocessing/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-05-11T12:21:22,529 creating build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/references 2026-05-11T12:21:22,530 copying src/omicverse_skills/skills/bulk-metabol-pathway-multifactor/references/source-grounding.md -> build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/references 2026-05-11T12:21:22,532 creating build/lib/omicverse_skills/skills/single-cell-metatime-annotation/assets 2026-05-11T12:21:22,533 copying src/omicverse_skills/skills/single-cell-metatime-annotation/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-metatime-annotation/assets 2026-05-11T12:21:22,535 creating build/lib/omicverse_skills/skills/microbiome-meta-analysis/assets 2026-05-11T12:21:22,536 copying src/omicverse_skills/skills/microbiome-meta-analysis/assets/acceptance.json -> build/lib/omicverse_skills/skills/microbiome-meta-analysis/assets 2026-05-11T12:21:22,538 creating build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/assets 2026-05-11T12:21:22,539 copying src/omicverse_skills/skills/single-cell-monocle2-trajectory/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/assets 2026-05-11T12:21:22,541 creating build/lib/omicverse_skills/skills/single-cell-cellrank-fate/assets 2026-05-11T12:21:22,542 copying src/omicverse_skills/skills/single-cell-cellrank-fate/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cellrank-fate/assets 2026-05-11T12:21:22,544 creating build/lib/omicverse_skills/skills/single-cell-differential-abundance/assets 2026-05-11T12:21:22,545 copying src/omicverse_skills/skills/single-cell-differential-abundance/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/assets 2026-05-11T12:21:22,547 creating build/lib/omicverse_skills/skills/bulk-metabol-multivariate/assets 2026-05-11T12:21:22,548 copying src/omicverse_skills/skills/bulk-metabol-multivariate/assets/acceptance.json -> build/lib/omicverse_skills/skills/bulk-metabol-multivariate/assets 2026-05-11T12:21:22,551 creating build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/assets 2026-05-11T12:21:22,551 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/assets 2026-05-11T12:21:22,553 creating build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/assets 2026-05-11T12:21:22,554 copying src/omicverse_skills/skills/bulk-celltype-deconvolution/assets/acceptance.json -> build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/assets 2026-05-11T12:21:22,557 creating build/lib/omicverse_skills/skills/single-cell-rna-velocity/assets 2026-05-11T12:21:22,558 copying src/omicverse_skills/skills/single-cell-rna-velocity/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/assets 2026-05-11T12:21:22,560 creating build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/assets 2026-05-11T12:21:22,561 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/assets 2026-05-11T12:21:22,563 creating build/lib/omicverse_skills/skills/single-cell-kb-alignment/assets 2026-05-11T12:21:22,564 copying src/omicverse_skills/skills/single-cell-kb-alignment/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/assets 2026-05-11T12:21:22,567 creating build/lib/omicverse_skills/skills/single-cell-scenic/assets 2026-05-11T12:21:22,568 copying src/omicverse_skills/skills/single-cell-scenic/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-scenic/assets 2026-05-11T12:21:22,570 creating build/lib/omicverse_skills/skills/reference-label-transfer/assets 2026-05-11T12:21:22,571 copying src/omicverse_skills/skills/reference-label-transfer/assets/acceptance.json -> build/lib/omicverse_skills/skills/reference-label-transfer/assets 2026-05-11T12:21:22,573 creating build/lib/omicverse_skills/skills/single-cell-clustering-backends/assets 2026-05-11T12:21:22,574 copying src/omicverse_skills/skills/single-cell-clustering-backends/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/assets 2026-05-11T12:21:22,577 creating build/lib/omicverse_skills/skills/microbiome-phylogeny/assets 2026-05-11T12:21:22,578 copying src/omicverse_skills/skills/microbiome-phylogeny/assets/acceptance.json -> build/lib/omicverse_skills/skills/microbiome-phylogeny/assets 2026-05-11T12:21:22,580 creating build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets 2026-05-11T12:21:22,581 copying src/omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets/acceptance.json -> build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets 2026-05-11T12:21:22,583 creating build/lib/omicverse_skills/skills/single-cell-trajectory-inference/assets 2026-05-11T12:21:22,584 copying src/omicverse_skills/skills/single-cell-trajectory-inference/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/assets 2026-05-11T12:21:22,586 creating build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/assets 2026-05-11T12:21:22,587 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/assets 2026-05-11T12:21:22,589 creating build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/assets 2026-05-11T12:21:22,590 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/assets/acceptance.json -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/assets 2026-05-11T12:21:22,592 creating build/lib/omicverse_skills/skills/single-cell-liana-communication/assets 2026-05-11T12:21:22,593 copying src/omicverse_skills/skills/single-cell-liana-communication/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-liana-communication/assets 2026-05-11T12:21:22,595 creating build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets 2026-05-11T12:21:22,596 copying src/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets/acceptance.json -> build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets 2026-05-11T12:21:22,599 creating build/lib/omicverse_skills/skills/single-cell-cytotrace2/assets 2026-05-11T12:21:22,600 copying src/omicverse_skills/skills/single-cell-cytotrace2/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/assets 2026-05-11T12:21:22,602 creating build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/assets 2026-05-11T12:21:22,603 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/assets 2026-05-11T12:21:22,605 creating build/lib/omicverse_skills/skills/single-cell-differential-expression/assets 2026-05-11T12:21:22,606 copying src/omicverse_skills/skills/single-cell-differential-expression/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-differential-expression/assets 2026-05-11T12:21:22,609 creating build/lib/omicverse_skills/skills/single-cell-annotation/assets 2026-05-11T12:21:22,610 copying src/omicverse_skills/skills/single-cell-annotation/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-annotation/assets 2026-05-11T12:21:22,612 creating build/lib/omicverse_skills/skills/single-cell-batch-integration/assets 2026-05-11T12:21:22,613 copying src/omicverse_skills/skills/single-cell-batch-integration/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-batch-integration/assets 2026-05-11T12:21:22,615 creating build/lib/omicverse_skills/skills/single-cell-via-trajectory/assets 2026-05-11T12:21:22,616 copying src/omicverse_skills/skills/single-cell-via-trajectory/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-via-trajectory/assets 2026-05-11T12:21:22,618 creating build/lib/omicverse_skills/skills/micro-metabol-paired/assets 2026-05-11T12:21:22,619 copying src/omicverse_skills/skills/micro-metabol-paired/assets/acceptance.json -> build/lib/omicverse_skills/skills/micro-metabol-paired/assets 2026-05-11T12:21:22,621 creating build/lib/omicverse_skills/skills/microbiome-da-comparison/assets 2026-05-11T12:21:22,622 copying src/omicverse_skills/skills/microbiome-da-comparison/assets/acceptance.json -> build/lib/omicverse_skills/skills/microbiome-da-comparison/assets 2026-05-11T12:21:22,624 creating build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/assets 2026-05-11T12:21:22,625 copying src/omicverse_skills/skills/single-cell-cellmatch-ontology/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/assets 2026-05-11T12:21:22,628 creating build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/assets 2026-05-11T12:21:22,629 copying src/omicverse_skills/skills/single-cell-cellvote-consensus/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/assets 2026-05-11T12:21:22,631 creating build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/assets 2026-05-11T12:21:22,632 copying src/omicverse_skills/skills/bulk-metabol-preprocessing/assets/acceptance.json -> build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/assets 2026-05-11T12:21:22,634 creating build/lib/omicverse_skills/skills/single-cell-preprocessing/assets 2026-05-11T12:21:22,635 copying src/omicverse_skills/skills/single-cell-preprocessing/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-preprocessing/assets 2026-05-11T12:21:22,638 creating build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets 2026-05-11T12:21:22,639 copying src/omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets/acceptance.json -> build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets 2026-05-11T12:21:22,776 installing to build/bdist.linux-armv7l/wheel 2026-05-11T12:21:22,776 running install 2026-05-11T12:21:22,800 running install_lib 2026-05-11T12:21:22,805 creating build/bdist.linux-armv7l/wheel 2026-05-11T12:21:22,808 creating build/bdist.linux-armv7l/wheel/omicverse_skills 2026-05-11T12:21:22,809 copying build/lib/omicverse_skills/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills 2026-05-11T12:21:22,811 copying build/lib/omicverse_skills/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills 2026-05-11T12:21:22,813 copying build/lib/omicverse_skills/notebook_index.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills 2026-05-11T12:21:22,816 copying build/lib/omicverse_skills/notebook_index.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills 2026-05-11T12:21:22,820 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills 2026-05-11T12:21:22,822 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-metatime-annotation 2026-05-11T12:21:22,824 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-metatime-annotation/references 2026-05-11T12:21:22,825 copying build/lib/omicverse_skills/skills/single-cell-metatime-annotation/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-metatime-annotation/references 2026-05-11T12:21:22,829 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-metatime-annotation/assets 2026-05-11T12:21:22,830 copying build/lib/omicverse_skills/skills/single-cell-metatime-annotation/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-metatime-annotation/assets 2026-05-11T12:21:22,832 copying build/lib/omicverse_skills/skills/single-cell-metatime-annotation/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-metatime-annotation 2026-05-11T12:21:22,834 copying build/lib/omicverse_skills/skills/single-cell-metatime-annotation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-metatime-annotation 2026-05-11T12:21:22,837 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-meta-analysis 2026-05-11T12:21:22,839 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-meta-analysis/references 2026-05-11T12:21:22,840 copying build/lib/omicverse_skills/skills/microbiome-meta-analysis/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-meta-analysis/references 2026-05-11T12:21:22,843 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-meta-analysis/assets 2026-05-11T12:21:22,844 copying build/lib/omicverse_skills/skills/microbiome-meta-analysis/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-meta-analysis/assets 2026-05-11T12:21:22,846 copying build/lib/omicverse_skills/skills/microbiome-meta-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-meta-analysis 2026-05-11T12:21:22,849 copying build/lib/omicverse_skills/skills/microbiome-meta-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-meta-analysis 2026-05-11T12:21:22,852 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-monocle2-trajectory 2026-05-11T12:21:22,854 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-monocle2-trajectory/references 2026-05-11T12:21:22,855 copying build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-monocle2-trajectory/references 2026-05-11T12:21:22,858 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-monocle2-trajectory/assets 2026-05-11T12:21:22,859 copying build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-monocle2-trajectory/assets 2026-05-11T12:21:22,861 copying build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-monocle2-trajectory 2026-05-11T12:21:22,863 copying build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-monocle2-trajectory 2026-05-11T12:21:22,867 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellrank-fate 2026-05-11T12:21:22,869 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellrank-fate/references 2026-05-11T12:21:22,870 copying build/lib/omicverse_skills/skills/single-cell-cellrank-fate/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellrank-fate/references 2026-05-11T12:21:22,873 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellrank-fate/assets 2026-05-11T12:21:22,874 copying build/lib/omicverse_skills/skills/single-cell-cellrank-fate/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellrank-fate/assets 2026-05-11T12:21:22,877 copying build/lib/omicverse_skills/skills/single-cell-cellrank-fate/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellrank-fate 2026-05-11T12:21:22,879 copying build/lib/omicverse_skills/skills/single-cell-cellrank-fate/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellrank-fate 2026-05-11T12:21:22,882 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance 2026-05-11T12:21:22,884 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance/references 2026-05-11T12:21:22,886 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-05-11T12:21:22,888 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-05-11T12:21:22,891 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-05-11T12:21:22,893 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-05-11T12:21:22,896 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance/assets 2026-05-11T12:21:22,897 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/assets 2026-05-11T12:21:22,900 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-05-11T12:21:22,902 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/scripts/dct_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-05-11T12:21:22,904 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance 2026-05-11T12:21:22,907 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-multivariate 2026-05-11T12:21:22,909 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-multivariate/references 2026-05-11T12:21:22,911 copying build/lib/omicverse_skills/skills/bulk-metabol-multivariate/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-multivariate/references 2026-05-11T12:21:22,914 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-multivariate/assets 2026-05-11T12:21:22,915 copying build/lib/omicverse_skills/skills/bulk-metabol-multivariate/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-multivariate/assets 2026-05-11T12:21:22,918 copying build/lib/omicverse_skills/skills/bulk-metabol-multivariate/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-multivariate 2026-05-11T12:21:22,920 copying build/lib/omicverse_skills/skills/bulk-metabol-multivariate/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-multivariate 2026-05-11T12:21:22,924 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-sctour-trajectory 2026-05-11T12:21:22,926 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-05-11T12:21:22,928 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-05-11T12:21:22,930 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-05-11T12:21:22,933 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-05-11T12:21:22,936 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-sctour-trajectory/assets 2026-05-11T12:21:22,937 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/assets 2026-05-11T12:21:22,940 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory 2026-05-11T12:21:22,943 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-deseq2-analysis 2026-05-11T12:21:22,944 copying build/lib/omicverse_skills/skills/bulk-deseq2-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deseq2-analysis 2026-05-11T12:21:22,946 copying build/lib/omicverse_skills/skills/bulk-deseq2-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deseq2-analysis 2026-05-11T12:21:22,950 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-celltype-deconvolution 2026-05-11T12:21:22,952 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-celltype-deconvolution/references 2026-05-11T12:21:22,953 copying build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-celltype-deconvolution/references 2026-05-11T12:21:22,957 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-celltype-deconvolution/assets 2026-05-11T12:21:22,958 copying build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-celltype-deconvolution/assets 2026-05-11T12:21:22,960 copying build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-celltype-deconvolution 2026-05-11T12:21:22,963 copying build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-celltype-deconvolution 2026-05-11T12:21:22,967 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-deg-analysis 2026-05-11T12:21:22,968 copying build/lib/omicverse_skills/skills/bulk-deg-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deg-analysis 2026-05-11T12:21:22,970 copying build/lib/omicverse_skills/skills/bulk-deg-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deg-analysis 2026-05-11T12:21:22,973 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/gsea-enrichment 2026-05-11T12:21:22,975 copying build/lib/omicverse_skills/skills/gsea-enrichment/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/gsea-enrichment 2026-05-11T12:21:22,978 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-stats-analysis 2026-05-11T12:21:22,979 copying build/lib/omicverse_skills/skills/data-stats-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-stats-analysis 2026-05-11T12:21:22,983 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity 2026-05-11T12:21:22,984 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity/references 2026-05-11T12:21:22,986 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-05-11T12:21:22,988 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-05-11T12:21:22,990 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-05-11T12:21:22,992 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-05-11T12:21:22,995 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity/assets 2026-05-11T12:21:22,996 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/assets 2026-05-11T12:21:22,999 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-05-11T12:21:23,000 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/scripts/graphvelo_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-05-11T12:21:23,003 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity 2026-05-11T12:21:23,006 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-multiomics 2026-05-11T12:21:23,007 copying build/lib/omicverse_skills/skills/single-multiomics/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-multiomics 2026-05-11T12:21:23,009 copying build/lib/omicverse_skills/skills/single-multiomics/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-multiomics 2026-05-11T12:21:23,012 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery 2026-05-11T12:21:23,014 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-05-11T12:21:23,015 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-05-11T12:21:23,017 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-05-11T12:21:23,019 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-05-11T12:21:23,021 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-05-11T12:21:23,024 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery/assets 2026-05-11T12:21:23,025 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/assets 2026-05-11T12:21:23,028 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-05-11T12:21:23,030 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts/cnmf_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-05-11T12:21:23,032 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery 2026-05-11T12:21:23,035 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-kb-alignment 2026-05-11T12:21:23,037 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-kb-alignment/references 2026-05-11T12:21:23,038 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-05-11T12:21:23,041 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-05-11T12:21:23,043 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/workflow-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-05-11T12:21:23,045 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-05-11T12:21:23,047 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-kb-alignment/assets 2026-05-11T12:21:23,048 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/assets 2026-05-11T12:21:23,051 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment 2026-05-11T12:21:23,054 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-popv-annotation 2026-05-11T12:21:23,055 copying build/lib/omicverse_skills/skills/single-popv-annotation/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-popv-annotation 2026-05-11T12:21:23,058 copying build/lib/omicverse_skills/skills/single-popv-annotation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-popv-annotation 2026-05-11T12:21:23,061 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic 2026-05-11T12:21:23,063 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic/references 2026-05-11T12:21:23,064 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-05-11T12:21:23,066 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-05-11T12:21:23,069 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-05-11T12:21:23,071 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-05-11T12:21:23,073 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic/assets 2026-05-11T12:21:23,074 copying build/lib/omicverse_skills/skills/single-cell-scenic/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/assets 2026-05-11T12:21:23,077 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic/scripts 2026-05-11T12:21:23,079 copying build/lib/omicverse_skills/skills/single-cell-scenic/scripts/scenic_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/scripts 2026-05-11T12:21:23,081 copying build/lib/omicverse_skills/skills/single-cell-scenic/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic 2026-05-11T12:21:23,084 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/reference-label-transfer 2026-05-11T12:21:23,086 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/reference-label-transfer/references 2026-05-11T12:21:23,087 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-05-11T12:21:23,090 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/integration-method-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-05-11T12:21:23,092 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-05-11T12:21:23,094 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-05-11T12:21:23,096 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/reference-label-transfer/assets 2026-05-11T12:21:23,098 copying build/lib/omicverse_skills/skills/reference-label-transfer/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/assets 2026-05-11T12:21:23,100 copying build/lib/omicverse_skills/skills/reference-label-transfer/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer 2026-05-11T12:21:23,103 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends 2026-05-11T12:21:23,105 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends/references 2026-05-11T12:21:23,106 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-05-11T12:21:23,108 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-05-11T12:21:23,110 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-05-11T12:21:23,112 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-05-11T12:21:23,115 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends/assets 2026-05-11T12:21:23,116 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/assets 2026-05-11T12:21:23,119 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-05-11T12:21:23,120 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/scripts/clustering_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-05-11T12:21:23,122 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends 2026-05-11T12:21:23,125 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-io-loading 2026-05-11T12:21:23,127 copying build/lib/omicverse_skills/skills/data-io-loading/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-io-loading 2026-05-11T12:21:23,129 copying build/lib/omicverse_skills/skills/data-io-loading/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-io-loading 2026-05-11T12:21:23,132 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-phylogeny 2026-05-11T12:21:23,134 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-phylogeny/references 2026-05-11T12:21:23,136 copying build/lib/omicverse_skills/skills/microbiome-phylogeny/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-phylogeny/references 2026-05-11T12:21:23,139 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-phylogeny/assets 2026-05-11T12:21:23,140 copying build/lib/omicverse_skills/skills/microbiome-phylogeny/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-phylogeny/assets 2026-05-11T12:21:23,143 copying build/lib/omicverse_skills/skills/microbiome-phylogeny/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-phylogeny 2026-05-11T12:21:23,145 copying build/lib/omicverse_skills/skills/microbiome-phylogeny/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-phylogeny 2026-05-11T12:21:23,148 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-05-11T12:21:23,150 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-16s-amplicon-dada2/references 2026-05-11T12:21:23,151 copying build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-16s-amplicon-dada2/references 2026-05-11T12:21:23,154 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets 2026-05-11T12:21:23,156 copying build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets 2026-05-11T12:21:23,158 copying build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-05-11T12:21:23,160 copying build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-05-11T12:21:23,164 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/plotting-visualization 2026-05-11T12:21:23,165 copying build/lib/omicverse_skills/skills/plotting-visualization/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/plotting-visualization 2026-05-11T12:21:23,168 copying build/lib/omicverse_skills/skills/plotting-visualization/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/plotting-visualization 2026-05-11T12:21:23,171 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference 2026-05-11T12:21:23,173 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-05-11T12:21:23,174 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-05-11T12:21:23,176 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-05-11T12:21:23,179 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-05-11T12:21:23,181 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-05-11T12:21:23,183 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference/assets 2026-05-11T12:21:23,185 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/assets 2026-05-11T12:21:23,188 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-05-11T12:21:23,189 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/scripts/trajectory_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-05-11T12:21:23,192 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference 2026-05-11T12:21:23,195 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering 2026-05-11T12:21:23,197 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-05-11T12:21:23,198 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-05-11T12:21:23,200 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-05-11T12:21:23,202 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-05-11T12:21:23,204 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-05-11T12:21:23,206 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering/assets 2026-05-11T12:21:23,207 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/assets 2026-05-11T12:21:23,209 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-05-11T12:21:23,210 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts/lda_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-05-11T12:21:23,212 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering 2026-05-11T12:21:23,215 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/spatial-tutorials 2026-05-11T12:21:23,216 copying build/lib/omicverse_skills/skills/spatial-tutorials/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/spatial-tutorials 2026-05-11T12:21:23,218 copying build/lib/omicverse_skills/skills/spatial-tutorials/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/spatial-tutorials 2026-05-11T12:21:23,221 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/cross-modal-celltype-transfer 2026-05-11T12:21:23,223 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-05-11T12:21:23,224 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-05-11T12:21:23,226 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/integration-method-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-05-11T12:21:23,227 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-05-11T12:21:23,229 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-05-11T12:21:23,231 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/cross-modal-celltype-transfer/assets 2026-05-11T12:21:23,232 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/assets 2026-05-11T12:21:23,234 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer 2026-05-11T12:21:23,237 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/datasets-loading 2026-05-11T12:21:23,238 copying build/lib/omicverse_skills/skills/datasets-loading/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/datasets-loading 2026-05-11T12:21:23,240 copying build/lib/omicverse_skills/skills/datasets-loading/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/datasets-loading 2026-05-11T12:21:23,244 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-downstream-analysis 2026-05-11T12:21:23,245 copying build/lib/omicverse_skills/skills/single-downstream-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-downstream-analysis 2026-05-11T12:21:23,247 copying build/lib/omicverse_skills/skills/single-downstream-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-downstream-analysis 2026-05-11T12:21:23,250 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-viz-plots 2026-05-11T12:21:23,251 copying build/lib/omicverse_skills/skills/data-viz-plots/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-viz-plots 2026-05-11T12:21:23,253 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-export-excel 2026-05-11T12:21:23,254 copying build/lib/omicverse_skills/skills/data-export-excel/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-export-excel 2026-05-11T12:21:23,257 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-liana-communication 2026-05-11T12:21:23,259 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-liana-communication/references 2026-05-11T12:21:23,260 copying build/lib/omicverse_skills/skills/single-cell-liana-communication/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-liana-communication/references 2026-05-11T12:21:23,263 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-liana-communication/assets 2026-05-11T12:21:23,264 copying build/lib/omicverse_skills/skills/single-cell-liana-communication/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-liana-communication/assets 2026-05-11T12:21:23,266 copying build/lib/omicverse_skills/skills/single-cell-liana-communication/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-liana-communication 2026-05-11T12:21:23,268 copying build/lib/omicverse_skills/skills/single-cell-liana-communication/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-liana-communication 2026-05-11T12:21:23,271 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-fastq-quantification 2026-05-11T12:21:23,272 copying build/lib/omicverse_skills/skills/bulk-fastq-quantification/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-fastq-quantification 2026-05-11T12:21:23,274 copying build/lib/omicverse_skills/skills/bulk-fastq-quantification/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-fastq-quantification 2026-05-11T12:21:23,277 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/tcga-preprocessing 2026-05-11T12:21:23,278 copying build/lib/omicverse_skills/skills/tcga-preprocessing/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/tcga-preprocessing 2026-05-11T12:21:23,280 copying build/lib/omicverse_skills/skills/tcga-preprocessing/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/tcga-preprocessing 2026-05-11T12:21:23,283 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-05-11T12:21:23,284 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references 2026-05-11T12:21:23,285 copying build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references 2026-05-11T12:21:23,288 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets 2026-05-11T12:21:23,289 copying build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets 2026-05-11T12:21:23,291 copying build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-05-11T12:21:23,293 copying build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-05-11T12:21:23,296 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2 2026-05-11T12:21:23,298 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2/references 2026-05-11T12:21:23,299 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-05-11T12:21:23,301 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-05-11T12:21:23,303 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-05-11T12:21:23,304 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-05-11T12:21:23,307 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2/assets 2026-05-11T12:21:23,308 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/assets 2026-05-11T12:21:23,310 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-05-11T12:21:23,311 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/scripts/cytotrace2_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-05-11T12:21:23,313 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2 2026-05-11T12:21:23,316 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication 2026-05-11T12:21:23,317 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-05-11T12:21:23,318 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-05-11T12:21:23,320 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-05-11T12:21:23,322 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-05-11T12:21:23,324 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-05-11T12:21:23,326 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication/assets 2026-05-11T12:21:23,327 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/assets 2026-05-11T12:21:23,330 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-05-11T12:21:23,331 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts/cpdb_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-05-11T12:21:23,333 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication 2026-05-11T12:21:23,335 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-export-pdf 2026-05-11T12:21:23,336 copying build/lib/omicverse_skills/skills/data-export-pdf/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-export-pdf 2026-05-11T12:21:23,339 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-foundation-model 2026-05-11T12:21:23,340 copying build/lib/omicverse_skills/skills/single-cell-foundation-model/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-foundation-model 2026-05-11T12:21:23,343 copying build/lib/omicverse_skills/skills/single-cell-foundation-model/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-foundation-model 2026-05-11T12:21:23,345 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-to-single-deconvolution 2026-05-11T12:21:23,346 copying build/lib/omicverse_skills/skills/bulk-to-single-deconvolution/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-to-single-deconvolution 2026-05-11T12:21:23,348 copying build/lib/omicverse_skills/skills/bulk-to-single-deconvolution/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-to-single-deconvolution 2026-05-11T12:21:23,351 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-wgcna-analysis 2026-05-11T12:21:23,352 copying build/lib/omicverse_skills/skills/bulk-wgcna-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-wgcna-analysis 2026-05-11T12:21:23,354 copying build/lib/omicverse_skills/skills/bulk-wgcna-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-wgcna-analysis 2026-05-11T12:21:23,357 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-trajblend-interpolation 2026-05-11T12:21:23,358 copying build/lib/omicverse_skills/skills/bulk-trajblend-interpolation/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-trajblend-interpolation 2026-05-11T12:21:23,360 copying build/lib/omicverse_skills/skills/bulk-trajblend-interpolation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-trajblend-interpolation 2026-05-11T12:21:23,363 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression 2026-05-11T12:21:23,364 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression/references 2026-05-11T12:21:23,365 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-05-11T12:21:23,367 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-05-11T12:21:23,369 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-05-11T12:21:23,371 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-05-11T12:21:23,373 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression/assets 2026-05-11T12:21:23,374 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/assets 2026-05-11T12:21:23,376 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression/scripts 2026-05-11T12:21:23,378 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/scripts/deg_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/scripts 2026-05-11T12:21:23,380 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression 2026-05-11T12:21:23,382 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-annotation 2026-05-11T12:21:23,384 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-annotation/references 2026-05-11T12:21:23,385 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-05-11T12:21:23,387 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-05-11T12:21:23,389 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/backend-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-05-11T12:21:23,391 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-05-11T12:21:23,393 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-annotation/assets 2026-05-11T12:21:23,394 copying build/lib/omicverse_skills/skills/single-cell-annotation/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/assets 2026-05-11T12:21:23,396 copying build/lib/omicverse_skills/skills/single-cell-annotation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation 2026-05-11T12:21:23,399 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-transform 2026-05-11T12:21:23,400 copying build/lib/omicverse_skills/skills/data-transform/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-transform 2026-05-11T12:21:23,403 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration 2026-05-11T12:21:23,405 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration/references 2026-05-11T12:21:23,406 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-05-11T12:21:23,408 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-05-11T12:21:23,410 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/backend-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-05-11T12:21:23,412 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-05-11T12:21:23,414 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration/assets 2026-05-11T12:21:23,415 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/assets 2026-05-11T12:21:23,417 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration/scripts 2026-05-11T12:21:23,418 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/scripts/batch_integration_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/scripts 2026-05-11T12:21:23,420 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration 2026-05-11T12:21:23,423 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-to-spatial-mapping 2026-05-11T12:21:23,424 copying build/lib/omicverse_skills/skills/single-to-spatial-mapping/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-to-spatial-mapping 2026-05-11T12:21:23,426 copying build/lib/omicverse_skills/skills/single-to-spatial-mapping/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-to-spatial-mapping 2026-05-11T12:21:23,429 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-via-trajectory 2026-05-11T12:21:23,430 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-via-trajectory/references 2026-05-11T12:21:23,431 copying build/lib/omicverse_skills/skills/single-cell-via-trajectory/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-via-trajectory/references 2026-05-11T12:21:23,434 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-via-trajectory/assets 2026-05-11T12:21:23,435 copying build/lib/omicverse_skills/skills/single-cell-via-trajectory/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-via-trajectory/assets 2026-05-11T12:21:23,437 copying build/lib/omicverse_skills/skills/single-cell-via-trajectory/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-via-trajectory 2026-05-11T12:21:23,439 copying build/lib/omicverse_skills/skills/single-cell-via-trajectory/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-via-trajectory 2026-05-11T12:21:23,442 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/micro-metabol-paired 2026-05-11T12:21:23,443 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/micro-metabol-paired/references 2026-05-11T12:21:23,445 copying build/lib/omicverse_skills/skills/micro-metabol-paired/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/micro-metabol-paired/references 2026-05-11T12:21:23,447 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/micro-metabol-paired/assets 2026-05-11T12:21:23,448 copying build/lib/omicverse_skills/skills/micro-metabol-paired/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/micro-metabol-paired/assets 2026-05-11T12:21:23,450 copying build/lib/omicverse_skills/skills/micro-metabol-paired/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/micro-metabol-paired 2026-05-11T12:21:23,453 copying build/lib/omicverse_skills/skills/micro-metabol-paired/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/micro-metabol-paired 2026-05-11T12:21:23,455 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/biocontext-knowledge 2026-05-11T12:21:23,456 copying build/lib/omicverse_skills/skills/biocontext-knowledge/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/biocontext-knowledge 2026-05-11T12:21:23,458 copying build/lib/omicverse_skills/skills/biocontext-knowledge/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/biocontext-knowledge 2026-05-11T12:21:23,461 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cellfate-analysis 2026-05-11T12:21:23,462 copying build/lib/omicverse_skills/skills/single-cellfate-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cellfate-analysis 2026-05-11T12:21:23,464 copying build/lib/omicverse_skills/skills/single-cellfate-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cellfate-analysis 2026-05-11T12:21:23,467 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-da-comparison 2026-05-11T12:21:23,468 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-da-comparison/references 2026-05-11T12:21:23,469 copying build/lib/omicverse_skills/skills/microbiome-da-comparison/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-da-comparison/references 2026-05-11T12:21:23,472 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-da-comparison/assets 2026-05-11T12:21:23,473 copying build/lib/omicverse_skills/skills/microbiome-da-comparison/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-da-comparison/assets 2026-05-11T12:21:23,475 copying build/lib/omicverse_skills/skills/microbiome-da-comparison/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-da-comparison 2026-05-11T12:21:23,477 copying build/lib/omicverse_skills/skills/microbiome-da-comparison/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-da-comparison 2026-05-11T12:21:23,480 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-combat-correction 2026-05-11T12:21:23,482 copying build/lib/omicverse_skills/skills/bulk-combat-correction/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-combat-correction 2026-05-11T12:21:23,484 copying build/lib/omicverse_skills/skills/bulk-combat-correction/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-combat-correction 2026-05-11T12:21:23,487 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellmatch-ontology 2026-05-11T12:21:23,488 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellmatch-ontology/references 2026-05-11T12:21:23,490 copying build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellmatch-ontology/references 2026-05-11T12:21:23,493 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellmatch-ontology/assets 2026-05-11T12:21:23,494 copying build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellmatch-ontology/assets 2026-05-11T12:21:23,496 copying build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellmatch-ontology 2026-05-11T12:21:23,498 copying build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellmatch-ontology 2026-05-11T12:21:23,501 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellvote-consensus 2026-05-11T12:21:23,503 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellvote-consensus/references 2026-05-11T12:21:23,504 copying build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellvote-consensus/references 2026-05-11T12:21:23,507 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellvote-consensus/assets 2026-05-11T12:21:23,508 copying build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellvote-consensus/assets 2026-05-11T12:21:23,510 copying build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellvote-consensus 2026-05-11T12:21:23,512 copying build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellvote-consensus 2026-05-11T12:21:23,515 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-preprocessing 2026-05-11T12:21:23,517 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-preprocessing/references 2026-05-11T12:21:23,518 copying build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-preprocessing/references 2026-05-11T12:21:23,521 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-preprocessing/assets 2026-05-11T12:21:23,522 copying build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-preprocessing/assets 2026-05-11T12:21:23,524 copying build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-preprocessing 2026-05-11T12:21:23,526 copying build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-preprocessing 2026-05-11T12:21:23,529 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-preprocessing 2026-05-11T12:21:23,531 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-preprocessing/references 2026-05-11T12:21:23,532 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-05-11T12:21:23,534 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-05-11T12:21:23,537 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-05-11T12:21:23,539 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-05-11T12:21:23,542 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-preprocessing/assets 2026-05-11T12:21:23,543 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/assets 2026-05-11T12:21:23,545 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing 2026-05-11T12:21:23,548 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-05-11T12:21:23,550 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-pathway-multifactor/references 2026-05-11T12:21:23,551 copying build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-pathway-multifactor/references 2026-05-11T12:21:23,554 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets 2026-05-11T12:21:23,555 copying build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets 2026-05-11T12:21:23,556 copying build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-05-11T12:21:23,559 copying build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-05-11T12:21:23,562 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-stringdb-ppi 2026-05-11T12:21:23,563 copying build/lib/omicverse_skills/skills/bulk-stringdb-ppi/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-stringdb-ppi 2026-05-11T12:21:23,565 copying build/lib/omicverse_skills/skills/bulk-stringdb-ppi/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-stringdb-ppi 2026-05-11T12:21:23,567 running install_egg_info 2026-05-11T12:21:23,572 Copying src/omicverse_skills.egg-info to build/bdist.linux-armv7l/wheel/./omicverse_skills-0.3.1-py3.11.egg-info 2026-05-11T12:21:23,582 running install_scripts 2026-05-11T12:21:23,593 creating build/bdist.linux-armv7l/wheel/omicverse_skills-0.3.1.dist-info/WHEEL 2026-05-11T12:21:23,596 creating '/tmp/pip-wheel-qaddfvhx/.tmp-nhgwoto4/omicverse_skills-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-11T12:21:23,599 adding 'omicverse_skills/__init__.py' 2026-05-11T12:21:23,602 adding 'omicverse_skills/notebook_index.json' 2026-05-11T12:21:23,605 adding 'omicverse_skills/notebook_index.py' 2026-05-11T12:21:23,607 adding 'omicverse_skills/registry.py' 2026-05-11T12:21:23,610 adding 'omicverse_skills/skills/biocontext-knowledge/SKILL.md' 2026-05-11T12:21:23,612 adding 'omicverse_skills/skills/biocontext-knowledge/reference.md' 2026-05-11T12:21:23,615 adding 'omicverse_skills/skills/bulk-celltype-deconvolution/SKILL.md' 2026-05-11T12:21:23,617 adding 'omicverse_skills/skills/bulk-celltype-deconvolution/reference.md' 2026-05-11T12:21:23,619 adding 'omicverse_skills/skills/bulk-celltype-deconvolution/assets/acceptance.json' 2026-05-11T12:21:23,621 adding 'omicverse_skills/skills/bulk-celltype-deconvolution/references/source-grounding.md' 2026-05-11T12:21:23,623 adding 'omicverse_skills/skills/bulk-combat-correction/SKILL.md' 2026-05-11T12:21:23,625 adding 'omicverse_skills/skills/bulk-combat-correction/reference.md' 2026-05-11T12:21:23,627 adding 'omicverse_skills/skills/bulk-deg-analysis/SKILL.md' 2026-05-11T12:21:23,628 adding 'omicverse_skills/skills/bulk-deg-analysis/reference.md' 2026-05-11T12:21:23,630 adding 'omicverse_skills/skills/bulk-deseq2-analysis/SKILL.md' 2026-05-11T12:21:23,632 adding 'omicverse_skills/skills/bulk-deseq2-analysis/reference.md' 2026-05-11T12:21:23,635 adding 'omicverse_skills/skills/bulk-fastq-quantification/SKILL.md' 2026-05-11T12:21:23,636 adding 'omicverse_skills/skills/bulk-fastq-quantification/reference.md' 2026-05-11T12:21:23,640 adding 'omicverse_skills/skills/bulk-metabol-multivariate/SKILL.md' 2026-05-11T12:21:23,641 adding 'omicverse_skills/skills/bulk-metabol-multivariate/reference.md' 2026-05-11T12:21:23,644 adding 'omicverse_skills/skills/bulk-metabol-multivariate/assets/acceptance.json' 2026-05-11T12:21:23,646 adding 'omicverse_skills/skills/bulk-metabol-multivariate/references/source-grounding.md' 2026-05-11T12:21:23,650 adding 'omicverse_skills/skills/bulk-metabol-pathway-multifactor/SKILL.md' 2026-05-11T12:21:23,652 adding 'omicverse_skills/skills/bulk-metabol-pathway-multifactor/reference.md' 2026-05-11T12:21:23,654 adding 'omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets/acceptance.json' 2026-05-11T12:21:23,656 adding 'omicverse_skills/skills/bulk-metabol-pathway-multifactor/references/source-grounding.md' 2026-05-11T12:21:23,659 adding 'omicverse_skills/skills/bulk-metabol-preprocessing/SKILL.md' 2026-05-11T12:21:23,661 adding 'omicverse_skills/skills/bulk-metabol-preprocessing/reference.md' 2026-05-11T12:21:23,663 adding 'omicverse_skills/skills/bulk-metabol-preprocessing/assets/acceptance.json' 2026-05-11T12:21:23,665 adding 'omicverse_skills/skills/bulk-metabol-preprocessing/references/source-grounding.md' 2026-05-11T12:21:23,669 adding 'omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/SKILL.md' 2026-05-11T12:21:23,670 adding 'omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/reference.md' 2026-05-11T12:21:23,672 adding 'omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets/acceptance.json' 2026-05-11T12:21:23,675 adding 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(pyproject.toml): finished with status 'done' 2026-05-11T12:21:24,278 Created wheel for omicverse-skills: filename=omicverse_skills-0.3.1-py3-none-any.whl size=521887 sha256=7dcfe00a7af9a14fbeb5296dd7757d76a701001c74ffc723961d9461b60f782f 2026-05-11T12:21:24,279 Stored in directory: /tmp/pip-ephem-wheel-cache-1277tb42/wheels/c0/5a/c7/c4d7233774793578112238a7c19215a864a0b71d8a8509de1c 2026-05-11T12:21:24,298 Successfully built omicverse-skills 2026-05-11T12:21:24,314 Removed build tracker: '/tmp/pip-build-tracker-s8yzymhd'