2026-05-11T18:51:53,797 Created temporary directory: /tmp/pip-ephem-wheel-cache-obqndkgz 2026-05-11T18:51:53,799 Created temporary directory: /tmp/pip-build-tracker-h8xb1idj 2026-05-11T18:51:53,800 Initialized build tracking at /tmp/pip-build-tracker-h8xb1idj 2026-05-11T18:51:53,800 Created build tracker: /tmp/pip-build-tracker-h8xb1idj 2026-05-11T18:51:53,801 Entered build tracker: /tmp/pip-build-tracker-h8xb1idj 2026-05-11T18:51:53,802 Created temporary directory: /tmp/pip-wheel-bklqtabb 2026-05-11T18:51:53,805 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-11T18:51:53,807 Created temporary directory: /tmp/pip-ephem-wheel-cache-3gfla0gc 2026-05-11T18:51:53,830 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-11T18:51:53,833 2 location(s) to search for versions of topiary: 2026-05-11T18:51:53,833 * https://pypi.org/simple/topiary/ 2026-05-11T18:51:53,833 * https://www.piwheels.org/simple/topiary/ 2026-05-11T18:51:53,834 Fetching project page and analyzing links: https://pypi.org/simple/topiary/ 2026-05-11T18:51:53,835 Getting page https://pypi.org/simple/topiary/ 2026-05-11T18:51:53,836 Found index url https://pypi.org/simple 2026-05-11T18:51:54,083 Fetched page https://pypi.org/simple/topiary/ as application/vnd.pypi.simple.v1+json 2026-05-11T18:51:54,104 Found link https://files.pythonhosted.org/packages/38/f6/60c60d77093e492c9a139a87514fa230296ca94080fec6d479f22bf5cfcd/topiary-0.0.0.tar.gz (from 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https://archive1.piwheels.org/simple/topiary/topiary-0.0.17-py3-none-any.whl#sha256=9caa65a5a200720510e1c38a256ba0ee4702a443d0c0f9e56724aaa16b907517 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,422 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.16-py3-none-any.whl#sha256=1cce9bca3cbb426edd71bbf7bbd1c069b0498c46d67ce549315317b0f75ab1d6 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,422 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.15-py3-none-any.whl#sha256=ca5ae7481368a4fb5d839d1ac3cab6823cbebeb2733ef0e9c6b2275854eb895f (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,423 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.14-py3-none-any.whl#sha256=48e8744f89c7f03717c8e36a17ede28b495b845c7106cb5638c216db27054fad (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,424 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.13-py3-none-any.whl#sha256=588396661f87bea8be890d90c6800ac4825d06ae7db1c50c98a1978fe9c45bd3 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,424 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.10-py3-none-any.whl#sha256=56bea0cecf1273a44cd2e51ad294714c41e0fb7d9cc0b16382709573c4ec9443 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,425 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.9-py3-none-any.whl#sha256=da4dc4334fdf5cb89b68356e11737c8dab86fd100b9c7979e95eac3dc58fbd6d (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,425 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.8-py3-none-any.whl#sha256=12b4f283d8fbedbd316649be8833a17fee852097f1e5cd8963264e6c4a2721e0 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,426 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.7-py3-none-any.whl#sha256=6e23dbd38e19c12b658a8373b501f1e929c6fd3420749dee506a82b60b190d42 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,426 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.6-py3-none-any.whl#sha256=f3b597a0744c3a7540c3ffe571b8f4fad3d2ad40ddc6198952e2aee7c96ff82c (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,427 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.5-py3-none-any.whl#sha256=52f489eb5876b619e9988ee4c2fabec4df1a087c2f67f96cbb99ece92eb57576 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,427 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.4-py3-none-any.whl#sha256=5c94fb56e54399233efc5f88a6f6cfe2914773c5b2aa67a24f6ddf6089561b3b (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,428 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.3-py3-none-any.whl#sha256=197f9da38cd367d77acaec6282f0d22aefaf1e1ab6754379f671902958348f15 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,428 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.2-py3-none-any.whl#sha256=accaff90bafe6c929aece0f65b8ccedd45839064bf361d8f69bfefd543127ec2 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,429 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.1-py3-none-any.whl#sha256=6743a02aee34bc7567913bbe5c15a321924d9e1cb2c15f956e4ebb9b321707f4 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,430 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.0-py3-none-any.whl#sha256=a4de4e13dc8561c43fd350094d3cbc3267e0faacf5e65b94501ef15affdf51e6 (from https://www.piwheels.org/simple/topiary/) 2026-05-11T18:51:54,430 Skipping link: not a file: https://www.piwheels.org/simple/topiary/ 2026-05-11T18:51:54,431 Skipping link: not a file: https://pypi.org/simple/topiary/ 2026-05-11T18:51:54,458 Given no hashes to check 1 links for project 'topiary': discarding no candidates 2026-05-11T18:51:54,476 Collecting topiary==5.14.0 2026-05-11T18:51:54,479 Created temporary directory: /tmp/pip-unpack-h5549iy0 2026-05-11T18:51:54,703 Downloading topiary-5.14.0.tar.gz (233 kB) 2026-05-11T18:51:55,012 Added topiary==5.14.0 from https://files.pythonhosted.org/packages/9b/b4/622e1f16617f0fe76cde601889b5438332f4ffb68d35a42fef3362c3dce8/topiary-5.14.0.tar.gz to build tracker '/tmp/pip-build-tracker-h8xb1idj' 2026-05-11T18:51:55,017 Created temporary directory: /tmp/pip-build-env-omc6y55q 2026-05-11T18:51:55,022 Installing build dependencies: started 2026-05-11T18:51:55,023 Running command pip subprocess to install build dependencies 2026-05-11T18:51:56,193 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-11T18:51:56,640 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-11T18:51:56,664 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-11T18:51:58,491 Collecting setuptools>=64 2026-05-11T18:51:58,586 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-11T18:52:01,499 Installing collected packages: setuptools 2026-05-11T18:52:04,567 Successfully installed setuptools-82.0.1 2026-05-11T18:52:04,835 Installing build dependencies: finished with status 'done' 2026-05-11T18:52:04,841 Getting requirements to build wheel: started 2026-05-11T18:52:04,843 Running command Getting requirements to build wheel 2026-05-11T18:52:05,537 /tmp/pip-build-env-omc6y55q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-11T18:52:05,537 !! 2026-05-11T18:52:05,538 ******************************************************************************** 2026-05-11T18:52:05,539 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-11T18:52:05,540 License :: OSI Approved :: Apache Software License 2026-05-11T18:52:05,542 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-11T18:52:05,542 ******************************************************************************** 2026-05-11T18:52:05,544 !! 2026-05-11T18:52:05,544 dist._finalize_license_expression() 2026-05-11T18:52:05,545 /tmp/pip-build-env-omc6y55q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-11T18:52:05,546 !! 2026-05-11T18:52:05,547 ******************************************************************************** 2026-05-11T18:52:05,548 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-11T18:52:05,549 License :: OSI Approved :: Apache Software License 2026-05-11T18:52:05,550 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-11T18:52:05,551 ******************************************************************************** 2026-05-11T18:52:05,552 !! 2026-05-11T18:52:05,553 self._finalize_license_expression() 2026-05-11T18:52:05,554 running egg_info 2026-05-11T18:52:05,557 writing topiary.egg-info/PKG-INFO 2026-05-11T18:52:05,561 writing dependency_links to topiary.egg-info/dependency_links.txt 2026-05-11T18:52:05,563 writing entry points to topiary.egg-info/entry_points.txt 2026-05-11T18:52:05,565 writing requirements to topiary.egg-info/requires.txt 2026-05-11T18:52:05,566 writing top-level names to topiary.egg-info/top_level.txt 2026-05-11T18:52:05,594 reading manifest file 'topiary.egg-info/SOURCES.txt' 2026-05-11T18:52:05,601 adding license file 'LICENSE' 2026-05-11T18:52:05,607 writing manifest file 'topiary.egg-info/SOURCES.txt' 2026-05-11T18:52:05,705 Getting requirements to build wheel: finished with status 'done' 2026-05-11T18:52:05,709 Created temporary directory: /tmp/pip-modern-metadata-k85vf374 2026-05-11T18:52:05,711 Preparing metadata (pyproject.toml): started 2026-05-11T18:52:05,712 Running command Preparing metadata (pyproject.toml) 2026-05-11T18:52:06,361 /tmp/pip-build-env-omc6y55q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-11T18:52:06,361 !! 2026-05-11T18:52:06,362 ******************************************************************************** 2026-05-11T18:52:06,362 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-11T18:52:06,363 License :: OSI Approved :: Apache Software License 2026-05-11T18:52:06,364 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-11T18:52:06,365 ******************************************************************************** 2026-05-11T18:52:06,366 !! 2026-05-11T18:52:06,366 dist._finalize_license_expression() 2026-05-11T18:52:06,367 /tmp/pip-build-env-omc6y55q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-11T18:52:06,368 !! 2026-05-11T18:52:06,369 ******************************************************************************** 2026-05-11T18:52:06,369 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-11T18:52:06,370 License :: OSI Approved :: Apache Software License 2026-05-11T18:52:06,371 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-11T18:52:06,372 ******************************************************************************** 2026-05-11T18:52:06,373 !! 2026-05-11T18:52:06,374 self._finalize_license_expression() 2026-05-11T18:52:06,375 running dist_info 2026-05-11T18:52:06,384 creating /tmp/pip-modern-metadata-k85vf374/topiary.egg-info 2026-05-11T18:52:06,385 writing /tmp/pip-modern-metadata-k85vf374/topiary.egg-info/PKG-INFO 2026-05-11T18:52:06,389 writing dependency_links to /tmp/pip-modern-metadata-k85vf374/topiary.egg-info/dependency_links.txt 2026-05-11T18:52:06,391 writing entry points to /tmp/pip-modern-metadata-k85vf374/topiary.egg-info/entry_points.txt 2026-05-11T18:52:06,393 writing requirements to /tmp/pip-modern-metadata-k85vf374/topiary.egg-info/requires.txt 2026-05-11T18:52:06,394 writing top-level names to /tmp/pip-modern-metadata-k85vf374/topiary.egg-info/top_level.txt 2026-05-11T18:52:06,395 writing manifest file '/tmp/pip-modern-metadata-k85vf374/topiary.egg-info/SOURCES.txt' 2026-05-11T18:52:06,421 reading manifest file '/tmp/pip-modern-metadata-k85vf374/topiary.egg-info/SOURCES.txt' 2026-05-11T18:52:06,423 adding license file 'LICENSE' 2026-05-11T18:52:06,428 writing manifest file '/tmp/pip-modern-metadata-k85vf374/topiary.egg-info/SOURCES.txt' 2026-05-11T18:52:06,430 creating '/tmp/pip-modern-metadata-k85vf374/topiary-5.14.0.dist-info' 2026-05-11T18:52:06,558 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-11T18:52:06,564 Source in /tmp/pip-wheel-bklqtabb/topiary_ff7df2972d154d32945e3730a1e703a5 has version 5.14.0, which satisfies requirement topiary==5.14.0 from https://files.pythonhosted.org/packages/9b/b4/622e1f16617f0fe76cde601889b5438332f4ffb68d35a42fef3362c3dce8/topiary-5.14.0.tar.gz 2026-05-11T18:52:06,565 Removed topiary==5.14.0 from https://files.pythonhosted.org/packages/9b/b4/622e1f16617f0fe76cde601889b5438332f4ffb68d35a42fef3362c3dce8/topiary-5.14.0.tar.gz from build tracker '/tmp/pip-build-tracker-h8xb1idj' 2026-05-11T18:52:06,574 Created temporary directory: /tmp/pip-unpack-cv8ww9tq 2026-05-11T18:52:06,574 Building wheels for collected packages: topiary 2026-05-11T18:52:06,579 Created temporary directory: /tmp/pip-wheel-dok6kj89 2026-05-11T18:52:06,579 Destination directory: /tmp/pip-wheel-dok6kj89 2026-05-11T18:52:06,581 Building wheel for topiary (pyproject.toml): started 2026-05-11T18:52:06,583 Running command Building wheel for topiary (pyproject.toml) 2026-05-11T18:52:07,208 /tmp/pip-build-env-omc6y55q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-11T18:52:07,208 !! 2026-05-11T18:52:07,209 ******************************************************************************** 2026-05-11T18:52:07,210 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-11T18:52:07,211 License :: OSI Approved :: Apache Software License 2026-05-11T18:52:07,212 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-11T18:52:07,212 ******************************************************************************** 2026-05-11T18:52:07,213 !! 2026-05-11T18:52:07,214 dist._finalize_license_expression() 2026-05-11T18:52:07,214 /tmp/pip-build-env-omc6y55q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-11T18:52:07,215 !! 2026-05-11T18:52:07,216 ******************************************************************************** 2026-05-11T18:52:07,216 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-11T18:52:07,217 License :: OSI Approved :: Apache Software License 2026-05-11T18:52:07,218 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-11T18:52:07,219 ******************************************************************************** 2026-05-11T18:52:07,220 !! 2026-05-11T18:52:07,220 self._finalize_license_expression() 2026-05-11T18:52:07,221 running bdist_wheel 2026-05-11T18:52:07,233 running build 2026-05-11T18:52:07,233 running build_py 2026-05-11T18:52:07,239 creating build/lib/topiary 2026-05-11T18:52:07,242 copying topiary/filters.py -> build/lib/topiary 2026-05-11T18:52:07,244 copying topiary/self_proteome.py -> build/lib/topiary 2026-05-11T18:52:07,247 copying topiary/io.py -> build/lib/topiary 2026-05-11T18:52:07,249 copying topiary/properties.py -> build/lib/topiary 2026-05-11T18:52:07,252 copying topiary/wide.py -> build/lib/topiary 2026-05-11T18:52:07,254 copying topiary/inputs.py -> build/lib/topiary 2026-05-11T18:52:07,257 copying topiary/io_lens.py -> build/lib/topiary 2026-05-11T18:52:07,259 copying topiary/result.py -> build/lib/topiary 2026-05-11T18:52:07,262 copying topiary/predictor.py -> build/lib/topiary 2026-05-11T18:52:07,265 copying topiary/protein_fragment.py -> build/lib/topiary 2026-05-11T18:52:07,268 copying topiary/io_protein_fragment.py -> build/lib/topiary 2026-05-11T18:52:07,270 copying topiary/cached.py -> build/lib/topiary 2026-05-11T18:52:07,273 copying topiary/sequence_helpers.py -> build/lib/topiary 2026-05-11T18:52:07,276 copying topiary/__init__.py -> build/lib/topiary 2026-05-11T18:52:07,277 copying topiary/sources.py -> build/lib/topiary 2026-05-11T18:52:07,282 creating build/lib/tests 2026-05-11T18:52:07,283 copying tests/test_padding.py -> build/lib/tests 2026-05-11T18:52:07,285 copying tests/test_rna_helpers.py -> build/lib/tests 2026-05-11T18:52:07,287 copying tests/test_lazy_imports.py -> build/lib/tests 2026-05-11T18:52:07,289 copying tests/test_io_lens.py -> build/lib/tests 2026-05-11T18:52:07,292 copying tests/test_load_stringtie_gtf_fpkm.py -> build/lib/tests 2026-05-11T18:52:07,293 copying tests/test_peptide_property_node.py -> build/lib/tests 2026-05-11T18:52:07,296 copying tests/test_predict_from_variants_refactor.py -> build/lib/tests 2026-05-11T18:52:07,299 copying tests/test_cli_script.py -> build/lib/tests 2026-05-11T18:52:07,301 copying tests/test_self_proteome.py -> build/lib/tests 2026-05-11T18:52:07,303 copying tests/test_args_outputs.py -> build/lib/tests 2026-05-11T18:52:07,305 copying tests/test_direct_input_regressions.py -> build/lib/tests 2026-05-11T18:52:07,307 copying tests/test_expression_integration.py -> build/lib/tests 2026-05-11T18:52:07,309 copying tests/test_epitopes_from_commandline_args.py -> build/lib/tests 2026-05-11T18:52:07,311 copying tests/test_kind_support.py -> build/lib/tests 2026-05-11T18:52:07,314 copying tests/test_cli_coverage.py -> build/lib/tests 2026-05-11T18:52:07,316 copying tests/test_mutant_epitope_predictions_class2.py -> build/lib/tests 2026-05-11T18:52:07,318 copying tests/test_frameshift_fragments.py -> build/lib/tests 2026-05-11T18:52:07,320 copying tests/test_contains_mutant_residues.py -> build/lib/tests 2026-05-11T18:52:07,322 copying tests/test_result.py -> build/lib/tests 2026-05-11T18:52:07,325 copying tests/test_io.py -> build/lib/tests 2026-05-11T18:52:07,327 copying tests/test_edge_case_fixtures.py -> build/lib/tests 2026-05-11T18:52:07,329 copying tests/test_cli_cached_predictor.py -> build/lib/tests 2026-05-11T18:52:07,332 copying tests/test_cli_protein_changes.py -> build/lib/tests 2026-05-11T18:52:07,333 copying tests/test_load_cufflinks_fpkm.py -> build/lib/tests 2026-05-11T18:52:07,335 copying tests/test_dsl_roundtrip.py -> build/lib/tests 2026-05-11T18:52:07,338 copying tests/test_dsl_polish.py -> build/lib/tests 2026-05-11T18:52:07,340 copying tests/test_coverage_gaps.py -> build/lib/tests 2026-05-11T18:52:07,343 copying tests/test_sequence_helpers.py -> build/lib/tests 2026-05-11T18:52:07,345 copying tests/test_cli_ranking.py -> build/lib/tests 2026-05-11T18:52:07,347 copying tests/data.py -> build/lib/tests 2026-05-11T18:52:07,349 copying tests/test_best_allele.py -> build/lib/tests 2026-05-11T18:52:07,352 copying tests/test_expression_loader.py -> build/lib/tests 2026-05-11T18:52:07,354 copying tests/test_end_to_end.py -> build/lib/tests 2026-05-11T18:52:07,357 copying tests/test_inputs.py -> build/lib/tests 2026-05-11T18:52:07,359 copying tests/test_mutant_epitope_predictions_class1.py -> build/lib/tests 2026-05-11T18:52:07,361 copying tests/test_protein_fragment.py -> build/lib/tests 2026-05-11T18:52:07,364 copying tests/test_dsl_extensions.py -> build/lib/tests 2026-05-11T18:52:07,366 copying tests/common.py -> build/lib/tests 2026-05-11T18:52:07,368 copying tests/test_sources.py -> build/lib/tests 2026-05-11T18:52:07,370 copying tests/test_effect_expression_filters.py -> build/lib/tests 2026-05-11T18:52:07,372 copying tests/test_cached_predictor.py -> build/lib/tests 2026-05-11T18:52:07,376 copying tests/test_variant_expression_filters.py -> build/lib/tests 2026-05-11T18:52:07,378 copying tests/test_predict_from_fragments.py -> build/lib/tests 2026-05-11T18:52:07,381 copying tests/test_dataframe.py -> build/lib/tests 2026-05-11T18:52:07,383 copying tests/test_ranking.py -> build/lib/tests 2026-05-11T18:52:07,387 copying tests/test_deploy_script.py -> build/lib/tests 2026-05-11T18:52:07,389 copying tests/test_integration.py -> build/lib/tests 2026-05-11T18:52:07,391 copying tests/__init__.py -> build/lib/tests 2026-05-11T18:52:07,393 copying tests/test_predictor_internals.py -> build/lib/tests 2026-05-11T18:52:07,395 copying tests/test_validation_and_edge_cases.py -> build/lib/tests 2026-05-11T18:52:07,398 copying tests/test_sources_optional.py -> build/lib/tests 2026-05-11T18:52:07,400 copying tests/test_wide.py -> build/lib/tests 2026-05-11T18:52:07,402 copying tests/test_peptide_mutation_interval.py -> build/lib/tests 2026-05-11T18:52:07,405 creating build/lib/topiary/ranking 2026-05-11T18:52:07,406 copying topiary/ranking/parser.py -> build/lib/topiary/ranking 2026-05-11T18:52:07,409 copying topiary/ranking/apply.py -> build/lib/topiary/ranking 2026-05-11T18:52:07,412 copying topiary/ranking/nodes.py -> build/lib/topiary/ranking 2026-05-11T18:52:07,416 copying topiary/ranking/__init__.py -> build/lib/topiary/ranking 2026-05-11T18:52:07,418 creating build/lib/topiary/rna 2026-05-11T18:52:07,419 copying topiary/rna/gtf.py -> build/lib/topiary/rna 2026-05-11T18:52:07,421 copying topiary/rna/common.py -> build/lib/topiary/rna 2026-05-11T18:52:07,423 copying topiary/rna/expression_loader.py -> build/lib/topiary/rna 2026-05-11T18:52:07,426 copying topiary/rna/cufflinks.py -> build/lib/topiary/rna 2026-05-11T18:52:07,428 copying topiary/rna/__init__.py -> build/lib/topiary/rna 2026-05-11T18:52:07,430 creating build/lib/topiary/cli 2026-05-11T18:52:07,431 copying topiary/cli/script.py -> build/lib/topiary/cli 2026-05-11T18:52:07,433 copying topiary/cli/filtering.py -> build/lib/topiary/cli 2026-05-11T18:52:07,435 copying topiary/cli/sequence.py -> build/lib/topiary/cli 2026-05-11T18:52:07,437 copying topiary/cli/args.py -> build/lib/topiary/cli 2026-05-11T18:52:07,440 copying topiary/cli/protein_changes.py -> build/lib/topiary/cli 2026-05-11T18:52:07,442 copying topiary/cli/cached_predictor.py -> build/lib/topiary/cli 2026-05-11T18:52:07,445 copying topiary/cli/rna.py -> build/lib/topiary/cli 2026-05-11T18:52:07,447 copying topiary/cli/errors.py -> build/lib/topiary/cli 2026-05-11T18:52:07,449 copying topiary/cli/__init__.py -> build/lib/topiary/cli 2026-05-11T18:52:07,451 copying topiary/cli/outputs.py -> build/lib/topiary/cli 2026-05-11T18:52:07,453 running egg_info 2026-05-11T18:52:07,462 writing topiary.egg-info/PKG-INFO 2026-05-11T18:52:07,466 writing dependency_links to topiary.egg-info/dependency_links.txt 2026-05-11T18:52:07,468 writing entry points to topiary.egg-info/entry_points.txt 2026-05-11T18:52:07,469 writing requirements to topiary.egg-info/requires.txt 2026-05-11T18:52:07,470 writing top-level names to topiary.egg-info/top_level.txt 2026-05-11T18:52:07,487 reading manifest file 'topiary.egg-info/SOURCES.txt' 2026-05-11T18:52:07,494 adding license file 'LICENSE' 2026-05-11T18:52:07,501 writing manifest file 'topiary.egg-info/SOURCES.txt' 2026-05-11T18:52:07,519 installing to build/bdist.linux-armv7l/wheel 2026-05-11T18:52:07,519 running install 2026-05-11T18:52:07,542 running install_lib 2026-05-11T18:52:07,548 creating build/bdist.linux-armv7l/wheel 2026-05-11T18:52:07,551 creating build/bdist.linux-armv7l/wheel/topiary 2026-05-11T18:52:07,552 copying build/lib/topiary/filters.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,554 copying build/lib/topiary/self_proteome.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,557 copying build/lib/topiary/io.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,559 copying build/lib/topiary/properties.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,562 copying build/lib/topiary/wide.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,565 copying build/lib/topiary/inputs.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,568 creating build/bdist.linux-armv7l/wheel/topiary/ranking 2026-05-11T18:52:07,569 copying build/lib/topiary/ranking/parser.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-05-11T18:52:07,571 copying build/lib/topiary/ranking/apply.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-05-11T18:52:07,574 copying build/lib/topiary/ranking/nodes.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-05-11T18:52:07,577 copying build/lib/topiary/ranking/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-05-11T18:52:07,580 creating build/bdist.linux-armv7l/wheel/topiary/rna 2026-05-11T18:52:07,581 copying build/lib/topiary/rna/gtf.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-05-11T18:52:07,583 copying build/lib/topiary/rna/common.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-05-11T18:52:07,585 copying build/lib/topiary/rna/expression_loader.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-05-11T18:52:07,588 copying build/lib/topiary/rna/cufflinks.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-05-11T18:52:07,590 copying build/lib/topiary/rna/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-05-11T18:52:07,592 copying build/lib/topiary/io_lens.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,595 copying build/lib/topiary/result.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,597 copying build/lib/topiary/predictor.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,600 copying build/lib/topiary/protein_fragment.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,602 copying build/lib/topiary/io_protein_fragment.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,604 copying build/lib/topiary/cached.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,608 copying build/lib/topiary/sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,610 creating build/bdist.linux-armv7l/wheel/topiary/cli 2026-05-11T18:52:07,612 copying build/lib/topiary/cli/script.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-05-11T18:52:07,614 copying build/lib/topiary/cli/filtering.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-05-11T18:52:07,616 copying build/lib/topiary/cli/sequence.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-05-11T18:52:07,618 copying build/lib/topiary/cli/args.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-05-11T18:52:07,621 copying build/lib/topiary/cli/protein_changes.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-05-11T18:52:07,623 copying build/lib/topiary/cli/cached_predictor.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-05-11T18:52:07,625 copying build/lib/topiary/cli/rna.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-05-11T18:52:07,627 copying build/lib/topiary/cli/errors.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-05-11T18:52:07,629 copying build/lib/topiary/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-05-11T18:52:07,631 copying build/lib/topiary/cli/outputs.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-05-11T18:52:07,633 copying build/lib/topiary/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,635 copying build/lib/topiary/sources.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-05-11T18:52:07,639 creating build/bdist.linux-armv7l/wheel/tests 2026-05-11T18:52:07,640 copying build/lib/tests/test_padding.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,642 copying build/lib/tests/test_rna_helpers.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,644 copying build/lib/tests/test_lazy_imports.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,646 copying build/lib/tests/test_io_lens.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,649 copying build/lib/tests/test_load_stringtie_gtf_fpkm.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,651 copying build/lib/tests/test_peptide_property_node.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,653 copying build/lib/tests/test_predict_from_variants_refactor.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,656 copying build/lib/tests/test_cli_script.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,658 copying build/lib/tests/test_self_proteome.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,661 copying build/lib/tests/test_args_outputs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,663 copying build/lib/tests/test_direct_input_regressions.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,665 copying build/lib/tests/test_expression_integration.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,667 copying build/lib/tests/test_epitopes_from_commandline_args.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,669 copying build/lib/tests/test_kind_support.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,672 copying build/lib/tests/test_cli_coverage.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,674 copying build/lib/tests/test_mutant_epitope_predictions_class2.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,676 copying build/lib/tests/test_frameshift_fragments.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,679 copying build/lib/tests/test_contains_mutant_residues.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,680 copying build/lib/tests/test_result.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,683 copying build/lib/tests/test_io.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,686 copying build/lib/tests/test_edge_case_fixtures.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,688 copying build/lib/tests/test_cli_cached_predictor.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,691 copying build/lib/tests/test_cli_protein_changes.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,693 copying build/lib/tests/test_load_cufflinks_fpkm.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,695 copying build/lib/tests/test_dsl_roundtrip.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,697 copying build/lib/tests/test_dsl_polish.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,700 copying build/lib/tests/test_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,702 copying build/lib/tests/test_sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,704 copying build/lib/tests/test_cli_ranking.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,707 copying build/lib/tests/data.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,709 copying build/lib/tests/test_best_allele.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,712 copying build/lib/tests/test_expression_loader.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,714 copying build/lib/tests/test_end_to_end.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,717 copying build/lib/tests/test_inputs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,719 copying build/lib/tests/test_mutant_epitope_predictions_class1.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,721 copying build/lib/tests/test_protein_fragment.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,724 copying build/lib/tests/test_dsl_extensions.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,726 copying build/lib/tests/common.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,728 copying build/lib/tests/test_sources.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,730 copying build/lib/tests/test_effect_expression_filters.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,733 copying build/lib/tests/test_cached_predictor.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,736 copying build/lib/tests/test_variant_expression_filters.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,738 copying build/lib/tests/test_predict_from_fragments.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,741 copying build/lib/tests/test_dataframe.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,743 copying build/lib/tests/test_ranking.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,747 copying build/lib/tests/test_deploy_script.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,749 copying build/lib/tests/test_integration.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,751 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,752 copying build/lib/tests/test_predictor_internals.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,755 copying build/lib/tests/test_validation_and_edge_cases.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,758 copying build/lib/tests/test_sources_optional.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,760 copying build/lib/tests/test_wide.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,762 copying build/lib/tests/test_peptide_mutation_interval.py -> build/bdist.linux-armv7l/wheel/./tests 2026-05-11T18:52:07,764 running install_egg_info 2026-05-11T18:52:07,769 Copying topiary.egg-info to build/bdist.linux-armv7l/wheel/./topiary-5.14.0-py3.11.egg-info 2026-05-11T18:52:07,782 running install_scripts 2026-05-11T18:52:07,796 creating build/bdist.linux-armv7l/wheel/topiary-5.14.0.dist-info/WHEEL 2026-05-11T18:52:07,799 creating '/tmp/pip-wheel-dok6kj89/.tmp-m3sp7n0r/topiary-5.14.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-11T18:52:07,802 adding 'tests/__init__.py' 2026-05-11T18:52:07,803 adding 'tests/common.py' 2026-05-11T18:52:07,805 adding 'tests/data.py' 2026-05-11T18:52:07,806 adding 'tests/test_args_outputs.py' 2026-05-11T18:52:07,808 adding 'tests/test_best_allele.py' 2026-05-11T18:52:07,813 adding 'tests/test_cached_predictor.py' 2026-05-11T18:52:07,815 adding 'tests/test_cli_cached_predictor.py' 2026-05-11T18:52:07,817 adding 'tests/test_cli_coverage.py' 2026-05-11T18:52:07,818 adding 'tests/test_cli_protein_changes.py' 2026-05-11T18:52:07,820 adding 'tests/test_cli_ranking.py' 2026-05-11T18:52:07,821 adding 'tests/test_cli_script.py' 2026-05-11T18:52:07,822 adding 'tests/test_contains_mutant_residues.py' 2026-05-11T18:52:07,824 adding 'tests/test_coverage_gaps.py' 2026-05-11T18:52:07,826 adding 'tests/test_dataframe.py' 2026-05-11T18:52:07,827 adding 'tests/test_deploy_script.py' 2026-05-11T18:52:07,829 adding 'tests/test_direct_input_regressions.py' 2026-05-11T18:52:07,832 adding 'tests/test_dsl_extensions.py' 2026-05-11T18:52:07,835 adding 'tests/test_dsl_polish.py' 2026-05-11T18:52:07,839 adding 'tests/test_dsl_roundtrip.py' 2026-05-11T18:52:07,841 adding 'tests/test_edge_case_fixtures.py' 2026-05-11T18:52:07,843 adding 'tests/test_effect_expression_filters.py' 2026-05-11T18:52:07,845 adding 'tests/test_end_to_end.py' 2026-05-11T18:52:07,846 adding 'tests/test_epitopes_from_commandline_args.py' 2026-05-11T18:52:07,849 adding 'tests/test_expression_integration.py' 2026-05-11T18:52:07,851 adding 'tests/test_expression_loader.py' 2026-05-11T18:52:07,855 adding 'tests/test_frameshift_fragments.py' 2026-05-11T18:52:07,857 adding 'tests/test_inputs.py' 2026-05-11T18:52:07,859 adding 'tests/test_integration.py' 2026-05-11T18:52:07,861 adding 'tests/test_io.py' 2026-05-11T18:52:07,864 adding 'tests/test_io_lens.py' 2026-05-11T18:52:07,866 adding 'tests/test_kind_support.py' 2026-05-11T18:52:07,868 adding 'tests/test_lazy_imports.py' 2026-05-11T18:52:07,870 adding 'tests/test_load_cufflinks_fpkm.py' 2026-05-11T18:52:07,871 adding 'tests/test_load_stringtie_gtf_fpkm.py' 2026-05-11T18:52:07,873 adding 'tests/test_mutant_epitope_predictions_class1.py' 2026-05-11T18:52:07,875 adding 'tests/test_mutant_epitope_predictions_class2.py' 2026-05-11T18:52:07,876 adding 'tests/test_padding.py' 2026-05-11T18:52:07,878 adding 'tests/test_peptide_mutation_interval.py' 2026-05-11T18:52:07,880 adding 'tests/test_peptide_property_node.py' 2026-05-11T18:52:07,884 adding 'tests/test_predict_from_fragments.py' 2026-05-11T18:52:07,887 adding 'tests/test_predict_from_variants_refactor.py' 2026-05-11T18:52:07,889 adding 'tests/test_predictor_internals.py' 2026-05-11T18:52:07,892 adding 'tests/test_protein_fragment.py' 2026-05-11T18:52:07,906 adding 'tests/test_ranking.py' 2026-05-11T18:52:07,910 adding 'tests/test_result.py' 2026-05-11T18:52:07,911 adding 'tests/test_rna_helpers.py' 2026-05-11T18:52:07,915 adding 'tests/test_self_proteome.py' 2026-05-11T18:52:07,917 adding 'tests/test_sequence_helpers.py' 2026-05-11T18:52:07,919 adding 'tests/test_sources.py' 2026-05-11T18:52:07,920 adding 'tests/test_sources_optional.py' 2026-05-11T18:52:07,923 adding 'tests/test_validation_and_edge_cases.py' 2026-05-11T18:52:07,924 adding 'tests/test_variant_expression_filters.py' 2026-05-11T18:52:07,926 adding 'tests/test_wide.py' 2026-05-11T18:52:07,928 adding 'topiary/__init__.py' 2026-05-11T18:52:07,934 adding 'topiary/cached.py' 2026-05-11T18:52:07,936 adding 'topiary/filters.py' 2026-05-11T18:52:07,938 adding 'topiary/inputs.py' 2026-05-11T18:52:07,939 adding 'topiary/io.py' 2026-05-11T18:52:07,941 adding 'topiary/io_lens.py' 2026-05-11T18:52:07,943 adding 'topiary/io_protein_fragment.py' 2026-05-11T18:52:07,948 adding 'topiary/predictor.py' 2026-05-11T18:52:07,950 adding 'topiary/properties.py' 2026-05-11T18:52:07,952 adding 'topiary/protein_fragment.py' 2026-05-11T18:52:07,955 adding 'topiary/result.py' 2026-05-11T18:52:07,959 adding 'topiary/self_proteome.py' 2026-05-11T18:52:07,960 adding 'topiary/sequence_helpers.py' 2026-05-11T18:52:07,962 adding 'topiary/sources.py' 2026-05-11T18:52:07,964 adding 'topiary/wide.py' 2026-05-11T18:52:07,965 adding 'topiary/cli/__init__.py' 2026-05-11T18:52:07,968 adding 'topiary/cli/args.py' 2026-05-11T18:52:07,970 adding 'topiary/cli/cached_predictor.py' 2026-05-11T18:52:07,971 adding 'topiary/cli/errors.py' 2026-05-11T18:52:07,973 adding 'topiary/cli/filtering.py' 2026-05-11T18:52:07,974 adding 'topiary/cli/outputs.py' 2026-05-11T18:52:07,975 adding 'topiary/cli/protein_changes.py' 2026-05-11T18:52:07,977 adding 'topiary/cli/rna.py' 2026-05-11T18:52:07,978 adding 'topiary/cli/script.py' 2026-05-11T18:52:07,979 adding 'topiary/cli/sequence.py' 2026-05-11T18:52:07,981 adding 'topiary/ranking/__init__.py' 2026-05-11T18:52:07,983 adding 'topiary/ranking/apply.py' 2026-05-11T18:52:07,991 adding 'topiary/ranking/nodes.py' 2026-05-11T18:52:07,994 adding 'topiary/ranking/parser.py' 2026-05-11T18:52:07,996 adding 'topiary/rna/__init__.py' 2026-05-11T18:52:07,997 adding 'topiary/rna/common.py' 2026-05-11T18:52:07,999 adding 'topiary/rna/cufflinks.py' 2026-05-11T18:52:08,001 adding 'topiary/rna/expression_loader.py' 2026-05-11T18:52:08,002 adding 'topiary/rna/gtf.py' 2026-05-11T18:52:08,006 adding 'topiary-5.14.0.dist-info/licenses/LICENSE' 2026-05-11T18:52:08,008 adding 'topiary-5.14.0.dist-info/METADATA' 2026-05-11T18:52:08,010 adding 'topiary-5.14.0.dist-info/WHEEL' 2026-05-11T18:52:08,011 adding 'topiary-5.14.0.dist-info/entry_points.txt' 2026-05-11T18:52:08,011 adding 'topiary-5.14.0.dist-info/top_level.txt' 2026-05-11T18:52:08,013 adding 'topiary-5.14.0.dist-info/RECORD' 2026-05-11T18:52:08,018 removing build/bdist.linux-armv7l/wheel 2026-05-11T18:52:08,134 Building wheel for topiary (pyproject.toml): finished with status 'done' 2026-05-11T18:52:08,144 Created wheel for topiary: filename=topiary-5.14.0-py3-none-any.whl size=262426 sha256=cc15f25c09e8070bc0f776cd6d00809121197d11e294c561272252c0d70c50d6 2026-05-11T18:52:08,145 Stored in directory: /tmp/pip-ephem-wheel-cache-3gfla0gc/wheels/92/d3/74/ca651f4c24e2ebbc6e2efe8101553f4482cc8ad96f370b5e09 2026-05-11T18:52:08,164 Successfully built topiary 2026-05-11T18:52:08,176 Removed build tracker: '/tmp/pip-build-tracker-h8xb1idj'