2026-05-13T10:58:58,578 Created temporary directory: /tmp/pip-ephem-wheel-cache-5uuakug2 2026-05-13T10:58:58,580 Created temporary directory: /tmp/pip-build-tracker-2tfhurli 2026-05-13T10:58:58,581 Initialized build tracking at /tmp/pip-build-tracker-2tfhurli 2026-05-13T10:58:58,581 Created build tracker: /tmp/pip-build-tracker-2tfhurli 2026-05-13T10:58:58,582 Entered build tracker: /tmp/pip-build-tracker-2tfhurli 2026-05-13T10:58:58,583 Created temporary directory: /tmp/pip-wheel-xwzg161e 2026-05-13T10:58:58,585 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-13T10:58:58,588 Created temporary directory: /tmp/pip-ephem-wheel-cache-wtud92d6 2026-05-13T10:58:58,613 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-13T10:58:58,617 2 location(s) to search for versions of goatools: 2026-05-13T10:58:58,617 * https://pypi.org/simple/goatools/ 2026-05-13T10:58:58,617 * https://www.piwheels.org/simple/goatools/ 2026-05-13T10:58:58,617 Fetching project page and analyzing links: https://pypi.org/simple/goatools/ 2026-05-13T10:58:58,618 Getting page https://pypi.org/simple/goatools/ 2026-05-13T10:58:58,620 Found index url https://pypi.org/simple 2026-05-13T10:58:58,846 Fetched page https://pypi.org/simple/goatools/ as application/vnd.pypi.simple.v1+json 2026-05-13T10:58:58,857 Found link https://files.pythonhosted.org/packages/68/9f/aac469a604a671f2fb8af43abbc9a3baf9f4b89dc121a1069b022a01d33c/goatools-0.4.7.tar.gz (from 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https://files.pythonhosted.org/packages/5f/5b/d8c58daa81be087d3cc1b1f72253b004c27acd91eac043ac004a69cba4ec/goatools-1.4.5.tar.gz (from https://pypi.org/simple/goatools/), version: 1.4.5 2026-05-13T10:58:58,886 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/e7/6b/ce396d275a91f18eab1a64e53aa1654d22b4f019c47ac9751ed29c086acd/goatools-1.4.9-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-05-13T10:58:58,887 Found link https://files.pythonhosted.org/packages/0e/94/92eddd77b1acab8053878a1aa56e384bd369c2eadb3cb1eda183ed82a94c/goatools-1.4.9.tar.gz (from https://pypi.org/simple/goatools/), version: 1.4.9 2026-05-13T10:58:58,888 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/03/1c/7dc89b8dbfa73e858b60befde4f9ec2f225fbe5411c047c478015a2c55c4/goatools-1.4.11-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-05-13T10:58:58,888 Found link 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https://files.pythonhosted.org/packages/e6/87/07e80f31af72d8e2c35936d1e5670ac05ff6009cc4a9412eb99e18efd24a/goatools-1.6.5.tar.gz (from https://pypi.org/simple/goatools/), version: 1.6.5 2026-05-13T10:58:58,899 Fetching project page and analyzing links: https://www.piwheels.org/simple/goatools/ 2026-05-13T10:58:58,900 Getting page https://www.piwheels.org/simple/goatools/ 2026-05-13T10:58:58,901 Found index url https://www.piwheels.org/simple 2026-05-13T10:58:59,075 Fetched page https://www.piwheels.org/simple/goatools/ as text/html 2026-05-13T10:58:59,088 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-1.6.4-py3-none-any.whl#sha256=4ed612327940e450242f18f183e49889e2c205969808187d72ac5564d9ad2d45 (from https://www.piwheels.org/simple/goatools/) 2026-05-13T10:58:59,089 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-1.6.3-py3-none-any.whl#sha256=2edccb9eb92f76dbd93f72da388e58050cc1bb682f4653611816861e5f1e4d6c (from https://www.piwheels.org/simple/goatools/) 2026-05-13T10:58:59,089 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-1.6.2-py3-none-any.whl#sha256=15004a009c9bde483062226d00f6691b43d4477b9a5f0aa482072375e52c94aa (from https://www.piwheels.org/simple/goatools/) 2026-05-13T10:58:59,090 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-1.6.1-py3-none-any.whl#sha256=a6c566967be18105a7cca2d2c7dcd8772ddab0092cf0cca406028adc2e9de339 (from https://www.piwheels.org/simple/goatools/) 2026-05-13T10:58:59,090 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-1.5.2-py3-none-any.whl#sha256=b089e8091842d5e4225c3dae2874d138b69633746178b4d016a834feaaa6271a (from 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https://archive1.piwheels.org/simple/goatools/goatools-0.4.7-py3-none-any.whl#sha256=5f6053c64d50dc189971e7197bed72056cb5d64f38bf95dd4b2bb2b65b06b116 (from https://www.piwheels.org/simple/goatools/) 2026-05-13T10:58:59,113 Skipping link: not a file: https://www.piwheels.org/simple/goatools/ 2026-05-13T10:58:59,113 Skipping link: not a file: https://pypi.org/simple/goatools/ 2026-05-13T10:58:59,139 Given no hashes to check 1 links for project 'goatools': discarding no candidates 2026-05-13T10:58:59,159 Collecting goatools==1.6.5 2026-05-13T10:58:59,161 Created temporary directory: /tmp/pip-unpack-9qkh8txr 2026-05-13T10:58:59,390 Downloading goatools-1.6.5.tar.gz (17.8 MB) 2026-05-13T10:59:05,671 Added goatools==1.6.5 from https://files.pythonhosted.org/packages/e6/87/07e80f31af72d8e2c35936d1e5670ac05ff6009cc4a9412eb99e18efd24a/goatools-1.6.5.tar.gz to build tracker '/tmp/pip-build-tracker-2tfhurli' 2026-05-13T10:59:05,680 Created temporary directory: /tmp/pip-build-env-lanq_0ik 2026-05-13T10:59:05,684 Installing build dependencies: started 2026-05-13T10:59:05,685 Running command pip subprocess to install build dependencies 2026-05-13T10:59:06,863 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-13T10:59:07,305 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-13T10:59:07,328 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-13T10:59:09,127 Collecting setuptools 2026-05-13T10:59:09,128 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-13T10:59:09,147 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-13T10:59:09,497 Collecting setuptools_scm[toml] 2026-05-13T10:59:09,498 Obtaining dependency information for setuptools_scm[toml] from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata 2026-05-13T10:59:09,513 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB) 2026-05-13T10:59:09,523 Discarding https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl#sha256=600c37b3fea2bb517f59d76792adae856d0b5ce7735b186e4cde804375251321 (from https://www.piwheels.org/simple/setuptools-scm/) (requires-python:>=3.10): Requested setuptools_scm from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl#sha256=600c37b3fea2bb517f59d76792adae856d0b5ce7735b186e4cde804375251321 has inconsistent Name: expected 'setuptools_scm', but metadata has 'setuptools-scm' 2026-05-13T10:59:09,553 Using cached setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-13T10:59:09,708 Collecting setuptools_scm_git_archive 2026-05-13T10:59:09,709 Obtaining dependency information for setuptools_scm_git_archive from https://www.piwheels.org/simple/setuptools-scm-git-archive/setuptools_scm_git_archive-1.4.1-py2.py3-none-any.whl.metadata 2026-05-13T10:59:09,719 Downloading https://www.piwheels.org/simple/setuptools-scm-git-archive/setuptools_scm_git_archive-1.4.1-py2.py3-none-any.whl.metadata (841 bytes) 2026-05-13T10:59:09,731 Discarding https://www.piwheels.org/simple/setuptools-scm-git-archive/setuptools_scm_git_archive-1.4.1-py2.py3-none-any.whl#sha256=7e479b61e664e8f9268326f2a2b8cefa37184867e98dfd1c15f8685f61e0d522 (from https://www.piwheels.org/simple/setuptools-scm-git-archive/): Requested setuptools_scm_git_archive from https://www.piwheels.org/simple/setuptools-scm-git-archive/setuptools_scm_git_archive-1.4.1-py2.py3-none-any.whl#sha256=7e479b61e664e8f9268326f2a2b8cefa37184867e98dfd1c15f8685f61e0d522 has inconsistent Name: expected 'setuptools_scm_git_archive', but metadata has 'setuptools-scm-git-archive' 2026-05-13T10:59:09,904 Downloading setuptools_scm_git_archive-1.4.1-py2.py3-none-any.whl (3.3 kB) 2026-05-13T10:59:10,143 Collecting wheel 2026-05-13T10:59:10,144 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-05-13T10:59:10,163 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-05-13T10:59:10,248 Collecting vcs-versioning>=1.0.0.dev0 2026-05-13T10:59:10,249 Obtaining dependency information for vcs-versioning>=1.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata 2026-05-13T10:59:10,264 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata (1.6 kB) 2026-05-13T10:59:10,449 Collecting packaging>=20 2026-05-13T10:59:10,450 Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-13T10:59:10,464 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-13T10:59:10,718 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-13T10:59:10,736 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-13T10:59:10,757 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-13T10:59:11,074 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-13T10:59:11,109 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-13T10:59:11,137 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-13T10:59:11,167 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-13T10:59:11,272 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-13T10:59:14,423 Installing collected packages: setuptools_scm_git_archive, setuptools, packaging, wheel, vcs-versioning, setuptools_scm 2026-05-13T10:59:17,949 Creating /tmp/pip-build-env-lanq_0ik/overlay/local/bin 2026-05-13T10:59:17,952 changing mode of /tmp/pip-build-env-lanq_0ik/overlay/local/bin/wheel to 755 2026-05-13T10:59:18,278 changing mode of /tmp/pip-build-env-lanq_0ik/overlay/local/bin/vcs-versioning to 755 2026-05-13T10:59:18,390 changing mode of /tmp/pip-build-env-lanq_0ik/overlay/local/bin/setuptools-scm to 755 2026-05-13T10:59:18,431 Successfully installed packaging-26.2 setuptools-82.0.1 setuptools_scm-10.0.5 setuptools_scm_git_archive-1.4.1 vcs-versioning-1.1.1 wheel-0.47.0 2026-05-13T10:59:18,757 Installing build dependencies: finished with status 'done' 2026-05-13T10:59:18,764 Getting requirements to build wheel: started 2026-05-13T10:59:18,765 Running command Getting requirements to build wheel 2026-05-13T10:59:19,324 /tmp/pip-build-env-lanq_0ik/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T10:59:19,324 !! 2026-05-13T10:59:19,325 ******************************************************************************** 2026-05-13T10:59:19,326 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T10:59:19,327 License :: OSI Approved :: BSD License 2026-05-13T10:59:19,328 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T10:59:19,329 ******************************************************************************** 2026-05-13T10:59:19,330 !! 2026-05-13T10:59:19,331 self._finalize_license_expression() 2026-05-13T10:59:19,497 running egg_info 2026-05-13T10:59:19,505 writing goatools.egg-info/PKG-INFO 2026-05-13T10:59:19,509 writing dependency_links to goatools.egg-info/dependency_links.txt 2026-05-13T10:59:19,512 writing entry points to goatools.egg-info/entry_points.txt 2026-05-13T10:59:19,513 writing requirements to goatools.egg-info/requires.txt 2026-05-13T10:59:19,515 writing top-level names to goatools.egg-info/top_level.txt 2026-05-13T10:59:19,587 /tmp/pip-build-env-lanq_0ik/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-13T10:59:19,588 return get_active_overrides().subprocess_timeout 2026-05-13T10:59:19,595 listing git files failed - pretending there aren't any 2026-05-13T10:59:19,603 reading manifest file 'goatools.egg-info/SOURCES.txt' 2026-05-13T10:59:19,617 reading manifest template 'MANIFEST.in' 2026-05-13T10:59:19,619 warning: no previously-included files matching '*' found under directory '.github' 2026-05-13T10:59:19,620 warning: no previously-included files matching '*' found under directory 'data' 2026-05-13T10:59:19,621 warning: no previously-included files matching '*' found under directory 'doc' 2026-05-13T10:59:19,622 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-05-13T10:59:19,623 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-05-13T10:59:19,623 warning: no previously-included files matching '*' found under directory 'tests' 2026-05-13T10:59:19,624 warning: no previously-included files found matching '.*' 2026-05-13T10:59:19,625 adding license file 'LICENSE' 2026-05-13T10:59:19,634 writing manifest file 'goatools.egg-info/SOURCES.txt' 2026-05-13T10:59:19,735 Getting requirements to build wheel: finished with status 'done' 2026-05-13T10:59:19,738 Created temporary directory: /tmp/pip-modern-metadata-7tfi65l5 2026-05-13T10:59:19,741 Preparing metadata (pyproject.toml): started 2026-05-13T10:59:19,742 Running command Preparing metadata (pyproject.toml) 2026-05-13T10:59:20,394 /tmp/pip-build-env-lanq_0ik/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T10:59:20,395 !! 2026-05-13T10:59:20,396 ******************************************************************************** 2026-05-13T10:59:20,397 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T10:59:20,398 License :: OSI Approved :: BSD License 2026-05-13T10:59:20,399 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T10:59:20,400 ******************************************************************************** 2026-05-13T10:59:20,401 !! 2026-05-13T10:59:20,402 self._finalize_license_expression() 2026-05-13T10:59:20,427 running dist_info 2026-05-13T10:59:20,443 creating /tmp/pip-modern-metadata-7tfi65l5/goatools.egg-info 2026-05-13T10:59:20,444 writing /tmp/pip-modern-metadata-7tfi65l5/goatools.egg-info/PKG-INFO 2026-05-13T10:59:20,448 writing dependency_links to /tmp/pip-modern-metadata-7tfi65l5/goatools.egg-info/dependency_links.txt 2026-05-13T10:59:20,451 writing entry points to /tmp/pip-modern-metadata-7tfi65l5/goatools.egg-info/entry_points.txt 2026-05-13T10:59:20,452 writing requirements to /tmp/pip-modern-metadata-7tfi65l5/goatools.egg-info/requires.txt 2026-05-13T10:59:20,454 writing top-level names to /tmp/pip-modern-metadata-7tfi65l5/goatools.egg-info/top_level.txt 2026-05-13T10:59:20,455 writing manifest file '/tmp/pip-modern-metadata-7tfi65l5/goatools.egg-info/SOURCES.txt' 2026-05-13T10:59:20,517 /tmp/pip-build-env-lanq_0ik/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-13T10:59:20,518 return get_active_overrides().subprocess_timeout 2026-05-13T10:59:20,525 listing git files failed - pretending there aren't any 2026-05-13T10:59:20,530 reading manifest file '/tmp/pip-modern-metadata-7tfi65l5/goatools.egg-info/SOURCES.txt' 2026-05-13T10:59:20,532 reading manifest template 'MANIFEST.in' 2026-05-13T10:59:20,533 warning: no previously-included files matching '*' found under directory '.github' 2026-05-13T10:59:20,534 warning: no previously-included files matching '*' found under directory 'data' 2026-05-13T10:59:20,535 warning: no previously-included files matching '*' found under directory 'doc' 2026-05-13T10:59:20,536 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-05-13T10:59:20,537 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-05-13T10:59:20,538 warning: no previously-included files matching '*' found under directory 'tests' 2026-05-13T10:59:20,539 warning: no previously-included files found matching '.*' 2026-05-13T10:59:20,539 adding license file 'LICENSE' 2026-05-13T10:59:20,546 writing manifest file '/tmp/pip-modern-metadata-7tfi65l5/goatools.egg-info/SOURCES.txt' 2026-05-13T10:59:20,548 creating '/tmp/pip-modern-metadata-7tfi65l5/goatools-1.6.5.dist-info' 2026-05-13T10:59:20,694 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-13T10:59:20,699 Source in /tmp/pip-wheel-xwzg161e/goatools_fd06592f82774655baae5623b0478b34 has version 1.6.5, which satisfies requirement goatools==1.6.5 from https://files.pythonhosted.org/packages/e6/87/07e80f31af72d8e2c35936d1e5670ac05ff6009cc4a9412eb99e18efd24a/goatools-1.6.5.tar.gz 2026-05-13T10:59:20,700 Removed goatools==1.6.5 from https://files.pythonhosted.org/packages/e6/87/07e80f31af72d8e2c35936d1e5670ac05ff6009cc4a9412eb99e18efd24a/goatools-1.6.5.tar.gz from build tracker '/tmp/pip-build-tracker-2tfhurli' 2026-05-13T10:59:20,706 Created temporary directory: /tmp/pip-unpack-6fmsbz_v 2026-05-13T10:59:20,707 Building wheels for collected packages: goatools 2026-05-13T10:59:20,712 Created temporary directory: /tmp/pip-wheel-c24ho55i 2026-05-13T10:59:20,712 Destination directory: /tmp/pip-wheel-c24ho55i 2026-05-13T10:59:20,715 Building wheel for goatools (pyproject.toml): started 2026-05-13T10:59:20,716 Running command Building wheel for goatools (pyproject.toml) 2026-05-13T10:59:21,346 /tmp/pip-build-env-lanq_0ik/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T10:59:21,346 !! 2026-05-13T10:59:21,347 ******************************************************************************** 2026-05-13T10:59:21,348 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T10:59:21,349 License :: OSI Approved :: BSD License 2026-05-13T10:59:21,350 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T10:59:21,351 ******************************************************************************** 2026-05-13T10:59:21,352 !! 2026-05-13T10:59:21,353 self._finalize_license_expression() 2026-05-13T10:59:21,373 running bdist_wheel 2026-05-13T10:59:21,409 running build 2026-05-13T10:59:21,409 running build_py 2026-05-13T10:59:21,412 creating build/lib/goatools 2026-05-13T10:59:21,414 copying goatools/__main__.py -> build/lib/goatools 2026-05-13T10:59:21,416 copying goatools/go_enrichment.py -> build/lib/goatools 2026-05-13T10:59:21,419 copying goatools/associations.py -> build/lib/goatools 2026-05-13T10:59:21,422 copying goatools/randseed.py -> build/lib/goatools 2026-05-13T10:59:21,424 copying goatools/statsdescribe.py -> build/lib/goatools 2026-05-13T10:59:21,426 copying goatools/go_search.py -> build/lib/goatools 2026-05-13T10:59:21,429 copying goatools/pvalcalc.py -> build/lib/goatools 2026-05-13T10:59:21,431 copying goatools/version.py -> build/lib/goatools 2026-05-13T10:59:21,433 copying goatools/godag_plot.py -> build/lib/goatools 2026-05-13T10:59:21,435 copying goatools/nt_utils.py -> build/lib/goatools 2026-05-13T10:59:21,437 copying goatools/wr_tbl_class.py -> build/lib/goatools 2026-05-13T10:59:21,440 copying goatools/obo_tasks.py -> build/lib/goatools 2026-05-13T10:59:21,441 copying goatools/wr_tbl.py -> build/lib/goatools 2026-05-13T10:59:21,444 copying goatools/evidence_codes.py -> build/lib/goatools 2026-05-13T10:59:21,446 copying goatools/__init__.py -> build/lib/goatools 2026-05-13T10:59:21,448 copying goatools/base.py -> build/lib/goatools 2026-05-13T10:59:21,451 copying goatools/semantic.py -> build/lib/goatools 2026-05-13T10:59:21,453 copying goatools/obo_parser.py -> build/lib/goatools 2026-05-13T10:59:21,456 copying goatools/ratio.py -> build/lib/goatools 2026-05-13T10:59:21,458 copying goatools/multiple_testing.py -> build/lib/goatools 2026-05-13T10:59:21,460 copying goatools/godag_small.py -> build/lib/goatools 2026-05-13T10:59:21,462 copying goatools/mapslim.py -> build/lib/goatools 2026-05-13T10:59:21,464 copying goatools/godag_obosm.py -> build/lib/goatools 2026-05-13T10:59:21,466 copying goatools/utils.py -> build/lib/goatools 2026-05-13T10:59:21,468 creating build/lib/goatools/godag 2026-05-13T10:59:21,469 copying goatools/godag/relationship_str.py -> build/lib/goatools/godag 2026-05-13T10:59:21,471 copying goatools/godag/relationship_combos.py -> build/lib/goatools/godag 2026-05-13T10:59:21,473 copying goatools/godag/obo_optional_attributes.py -> build/lib/goatools/godag 2026-05-13T10:59:21,476 copying goatools/godag/prtfncs.py -> build/lib/goatools/godag 2026-05-13T10:59:21,478 copying goatools/godag/__init__.py -> build/lib/goatools/godag 2026-05-13T10:59:21,479 copying goatools/godag/reldepth.py -> build/lib/goatools/godag 2026-05-13T10:59:21,481 copying goatools/godag/go_tasks.py -> build/lib/goatools/godag 2026-05-13T10:59:21,484 copying goatools/godag/consts.py -> build/lib/goatools/godag 2026-05-13T10:59:21,486 copying goatools/godag/typedef.py -> build/lib/goatools/godag 2026-05-13T10:59:21,488 copying goatools/godag/prttime.py -> build/lib/goatools/godag 2026-05-13T10:59:21,490 creating build/lib/goatools/gosubdag 2026-05-13T10:59:21,491 copying goatools/gosubdag/go_edges.py -> build/lib/goatools/gosubdag 2026-05-13T10:59:21,494 copying goatools/gosubdag/__init__.py -> build/lib/goatools/gosubdag 2026-05-13T10:59:21,496 copying goatools/gosubdag/gosubdag_init.py -> build/lib/goatools/gosubdag 2026-05-13T10:59:21,498 copying goatools/gosubdag/go_most_specific.py -> build/lib/goatools/gosubdag 2026-05-13T10:59:21,501 copying goatools/gosubdag/godag_rcnt_init.py -> build/lib/goatools/gosubdag 2026-05-13T10:59:21,503 copying goatools/gosubdag/gosubdag.py -> build/lib/goatools/gosubdag 2026-05-13T10:59:21,505 copying goatools/gosubdag/go_tasks.py -> build/lib/goatools/gosubdag 2026-05-13T10:59:21,508 copying goatools/gosubdag/go_paths.py -> build/lib/goatools/gosubdag 2026-05-13T10:59:21,511 copying goatools/gosubdag/godag_rcnt.py -> build/lib/goatools/gosubdag 2026-05-13T10:59:21,513 copying goatools/gosubdag/utils.py -> build/lib/goatools/gosubdag 2026-05-13T10:59:21,516 creating build/lib/goatools/gosubdag/plot 2026-05-13T10:59:21,517 copying goatools/gosubdag/plot/go_edge.py -> build/lib/goatools/gosubdag/plot 2026-05-13T10:59:21,519 copying goatools/gosubdag/plot/go_name_shorten.py -> build/lib/goatools/gosubdag/plot 2026-05-13T10:59:21,522 copying goatools/gosubdag/plot/gosubdag_plot.py -> build/lib/goatools/gosubdag/plot 2026-05-13T10:59:21,525 copying goatools/gosubdag/plot/plot.py -> build/lib/goatools/gosubdag/plot 2026-05-13T10:59:21,527 copying goatools/gosubdag/plot/__init__.py -> build/lib/goatools/gosubdag/plot 2026-05-13T10:59:21,530 copying goatools/gosubdag/plot/go_node.py -> build/lib/goatools/gosubdag/plot 2026-05-13T10:59:21,532 copying goatools/gosubdag/plot/goea_results.py -> build/lib/goatools/gosubdag/plot 2026-05-13T10:59:21,535 copying goatools/gosubdag/plot/go2color.py -> build/lib/goatools/gosubdag/plot 2026-05-13T10:59:21,538 creating build/lib/goatools/gosubdag/rpt 2026-05-13T10:59:21,539 copying goatools/gosubdag/rpt/wr_xlsx.py -> build/lib/goatools/gosubdag/rpt 2026-05-13T10:59:21,542 copying goatools/gosubdag/rpt/__init__.py -> build/lib/goatools/gosubdag/rpt 2026-05-13T10:59:21,543 copying goatools/gosubdag/rpt/write_hierarchy.py -> build/lib/goatools/gosubdag/rpt 2026-05-13T10:59:21,547 creating build/lib/goatools/test_data 2026-05-13T10:59:21,548 copying goatools/test_data/genes_NCBI_10090_All.py -> build/lib/goatools/test_data 2026-05-13T10:59:21,715 copying goatools/test_data/gjoneska_goea_transient_increase.py -> build/lib/goatools/test_data 2026-05-13T10:59:21,789 copying goatools/test_data/nature3102_goea.py -> build/lib/goatools/test_data 2026-05-13T10:59:21,791 copying goatools/test_data/genes_NCBI_9606_All.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,201 copying goatools/test_data/sorter.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,204 copying goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,213 copying goatools/test_data/gjoneska_goea_transient_decrease.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,264 copying goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,447 copying goatools/test_data/__init__.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,449 copying goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,538 copying goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,750 copying goatools/test_data/checks.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,752 copying goatools/test_data/gjoneska_goea_late_decrease.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,849 copying goatools/test_data/gjoneska_goea_late_increase.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,966 copying goatools/test_data/gafs.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,968 copying goatools/test_data/wr_subobo.py -> build/lib/goatools/test_data 2026-05-13T10:59:22,971 copying goatools/test_data/gjoneska_goea_consistent_increase.py -> build/lib/goatools/test_data 2026-05-13T10:59:23,063 copying goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/lib/goatools/test_data 2026-05-13T10:59:23,178 copying goatools/test_data/godag_timed.py -> build/lib/goatools/test_data 2026-05-13T10:59:23,180 creating build/lib/goatools/test_data/sections 2026-05-13T10:59:23,181 copying goatools/test_data/sections/dvk2018_genefamilyclusters.py -> build/lib/goatools/test_data/sections 2026-05-13T10:59:23,184 copying goatools/test_data/sections/__init__.py -> build/lib/goatools/test_data/sections 2026-05-13T10:59:23,186 copying goatools/test_data/sections/gjoneska_pfenning.py -> build/lib/goatools/test_data/sections 2026-05-13T10:59:23,189 copying goatools/test_data/sections/data2018_07_find_enrichment.py -> build/lib/goatools/test_data/sections 2026-05-13T10:59:23,192 creating build/lib/goatools/test_data/cli 2026-05-13T10:59:23,193 copying goatools/test_data/cli/find_enrichment_dflts.py -> build/lib/goatools/test_data/cli 2026-05-13T10:59:23,195 copying goatools/test_data/cli/__init__.py -> build/lib/goatools/test_data/cli 2026-05-13T10:59:23,197 creating build/lib/goatools/cli 2026-05-13T10:59:23,199 copying goatools/cli/wr_sections.py -> build/lib/goatools/cli 2026-05-13T10:59:23,201 copying goatools/cli/docopt_parse.py -> build/lib/goatools/cli 2026-05-13T10:59:23,204 copying goatools/cli/gosubdag_plot.py -> build/lib/goatools/cli 2026-05-13T10:59:23,207 copying goatools/cli/main.py -> build/lib/goatools/cli 2026-05-13T10:59:23,209 copying goatools/cli/wr_hierarchy.py -> build/lib/goatools/cli 2026-05-13T10:59:23,212 copying goatools/cli/prt_terms.py -> build/lib/goatools/cli 2026-05-13T10:59:23,213 copying goatools/cli/__init__.py -> build/lib/goatools/cli 2026-05-13T10:59:23,215 copying goatools/cli/fetch_associations.py -> build/lib/goatools/cli 2026-05-13T10:59:23,217 copying goatools/cli/grouped.py -> build/lib/goatools/cli 2026-05-13T10:59:23,219 copying goatools/cli/find_enrichment.py -> build/lib/goatools/cli 2026-05-13T10:59:23,222 copying goatools/cli/compare_gos.py -> build/lib/goatools/cli 2026-05-13T10:59:23,224 copying goatools/cli/gos_get.py -> build/lib/goatools/cli 2026-05-13T10:59:23,226 copying goatools/cli/plot_go_term.py -> build/lib/goatools/cli 2026-05-13T10:59:23,228 copying goatools/cli/ncbi_gene_results_to_python.py -> build/lib/goatools/cli 2026-05-13T10:59:23,230 copying goatools/cli/map_to_slim.py -> build/lib/goatools/cli 2026-05-13T10:59:23,233 creating build/lib/goatools/rpt 2026-05-13T10:59:23,234 copying goatools/rpt/goea_nt_xfrm.py -> build/lib/goatools/rpt 2026-05-13T10:59:23,236 copying goatools/rpt/prtfmt.py -> build/lib/goatools/rpt 2026-05-13T10:59:23,238 copying goatools/rpt/__init__.py -> build/lib/goatools/rpt 2026-05-13T10:59:23,240 copying goatools/rpt/write_hierarchy_base.py -> build/lib/goatools/rpt 2026-05-13T10:59:23,242 copying goatools/rpt/rpt_lev_depth.py -> build/lib/goatools/rpt 2026-05-13T10:59:23,244 copying goatools/rpt/nts_xfrm.py -> build/lib/goatools/rpt 2026-05-13T10:59:23,247 creating build/lib/goatools/anno 2026-05-13T10:59:23,248 copying goatools/anno/update_association.py -> build/lib/goatools/anno 2026-05-13T10:59:23,251 copying goatools/anno/idtogos_reader.py -> build/lib/goatools/anno 2026-05-13T10:59:23,253 copying goatools/anno/dnld_ebi_goa.py -> build/lib/goatools/anno 2026-05-13T10:59:23,255 copying goatools/anno/genetogo_reader.py -> build/lib/goatools/anno 2026-05-13T10:59:23,257 copying goatools/anno/gaf_reader.py -> build/lib/goatools/anno 2026-05-13T10:59:23,259 copying goatools/anno/__init__.py -> build/lib/goatools/anno 2026-05-13T10:59:23,261 copying goatools/anno/annoreader_base.py -> build/lib/goatools/anno 2026-05-13T10:59:23,264 copying goatools/anno/gpad_reader.py -> build/lib/goatools/anno 2026-05-13T10:59:23,266 copying goatools/anno/factory.py -> build/lib/goatools/anno 2026-05-13T10:59:23,268 copying goatools/anno/opts.py -> build/lib/goatools/anno 2026-05-13T10:59:23,270 copying goatools/anno/broad_gos.py -> build/lib/goatools/anno 2026-05-13T10:59:23,273 copying goatools/anno/eco2group.py -> build/lib/goatools/anno 2026-05-13T10:59:23,276 creating build/lib/goatools/anno/init 2026-05-13T10:59:23,278 copying goatools/anno/init/reader_gaf.py -> build/lib/goatools/anno/init 2026-05-13T10:59:23,281 copying goatools/anno/init/reader_idtogos.py -> build/lib/goatools/anno/init 2026-05-13T10:59:23,283 copying goatools/anno/init/__init__.py -> build/lib/goatools/anno/init 2026-05-13T10:59:23,285 copying goatools/anno/init/reader_genetogo.py -> build/lib/goatools/anno/init 2026-05-13T10:59:23,287 copying goatools/anno/init/reader_gpad.py -> build/lib/goatools/anno/init 2026-05-13T10:59:23,290 copying goatools/anno/init/utils.py -> build/lib/goatools/anno/init 2026-05-13T10:59:23,293 creating build/lib/goatools/anno/extensions 2026-05-13T10:59:23,294 copying goatools/anno/extensions/__init__.py -> build/lib/goatools/anno/extensions 2026-05-13T10:59:23,296 copying goatools/anno/extensions/extensions.py -> build/lib/goatools/anno/extensions 2026-05-13T10:59:23,298 copying goatools/anno/extensions/factory.py -> build/lib/goatools/anno/extensions 2026-05-13T10:59:23,300 copying goatools/anno/extensions/extension.py -> build/lib/goatools/anno/extensions 2026-05-13T10:59:23,302 creating build/lib/goatools/goea 2026-05-13T10:59:23,304 copying goatools/goea/__init__.py -> build/lib/goatools/goea 2026-05-13T10:59:23,306 copying goatools/goea/go_enrichment_ns.py -> build/lib/goatools/goea 2026-05-13T10:59:23,309 creating build/lib/goatools/grouper 2026-05-13T10:59:23,310 copying goatools/grouper/wr_sections.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,313 copying goatools/grouper/grprobj_init.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,315 copying goatools/grouper/wrxlsx.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,318 copying goatools/grouper/aart_geneproducts_all.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,320 copying goatools/grouper/grprplt.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,322 copying goatools/grouper/sorter.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,324 copying goatools/grouper/sorter_nts.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,327 copying goatools/grouper/aart_geneproducts_one.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,329 copying goatools/grouper/plotobj.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,332 copying goatools/grouper/grprdflts.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,334 copying goatools/grouper/read_goids.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,336 copying goatools/grouper/__init__.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,338 copying goatools/grouper/sorter_gos.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,341 copying goatools/grouper/grprobj.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,343 copying goatools/grouper/tasks.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,345 copying goatools/grouper/colors.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,347 copying goatools/grouper/utils.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,350 copying goatools/grouper/hdrgos.py -> build/lib/goatools/grouper 2026-05-13T10:59:23,352 creating build/lib/goatools/parsers 2026-05-13T10:59:23,353 copying goatools/parsers/david_chart.py -> build/lib/goatools/parsers 2026-05-13T10:59:23,355 copying goatools/parsers/__init__.py -> build/lib/goatools/parsers 2026-05-13T10:59:23,357 copying goatools/parsers/ncbi_gene_file_reader.py -> build/lib/goatools/parsers 2026-05-13T10:59:23,360 creating build/lib/goatools/semsim 2026-05-13T10:59:23,361 copying goatools/semsim/__init__.py -> build/lib/goatools/semsim 2026-05-13T10:59:23,363 creating build/lib/goatools/semsim/termwise 2026-05-13T10:59:23,364 copying goatools/semsim/termwise/dag_a.py -> build/lib/goatools/semsim/termwise 2026-05-13T10:59:23,367 copying goatools/semsim/termwise/__init__.py -> build/lib/goatools/semsim/termwise 2026-05-13T10:59:23,368 copying goatools/semsim/termwise/wang.py -> build/lib/goatools/semsim/termwise 2026-05-13T10:59:23,371 running egg_info 2026-05-13T10:59:23,385 writing goatools.egg-info/PKG-INFO 2026-05-13T10:59:23,388 writing dependency_links to goatools.egg-info/dependency_links.txt 2026-05-13T10:59:23,390 writing entry points to goatools.egg-info/entry_points.txt 2026-05-13T10:59:23,392 writing requirements to goatools.egg-info/requires.txt 2026-05-13T10:59:23,393 writing top-level names to goatools.egg-info/top_level.txt 2026-05-13T10:59:23,445 /tmp/pip-build-env-lanq_0ik/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-13T10:59:23,446 return get_active_overrides().subprocess_timeout 2026-05-13T10:59:23,452 listing git files failed - pretending there aren't any 2026-05-13T10:59:23,457 reading manifest file 'goatools.egg-info/SOURCES.txt' 2026-05-13T10:59:23,469 reading manifest template 'MANIFEST.in' 2026-05-13T10:59:23,470 warning: no previously-included files matching '*' found under directory '.github' 2026-05-13T10:59:23,471 warning: no previously-included files matching '*' found under directory 'data' 2026-05-13T10:59:23,473 warning: no previously-included files matching '*' found under directory 'doc' 2026-05-13T10:59:23,474 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-05-13T10:59:23,475 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-05-13T10:59:23,476 warning: no previously-included files matching '*' found under directory 'tests' 2026-05-13T10:59:23,477 warning: no previously-included files found matching '.*' 2026-05-13T10:59:23,478 adding license file 'LICENSE' 2026-05-13T10:59:23,488 writing manifest file 'goatools.egg-info/SOURCES.txt' 2026-05-13T10:59:23,493 /tmp/pip-build-env-lanq_0ik/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'goatools.test_data.nbt_3102' is absent from the `packages` configuration. 2026-05-13T10:59:23,494 !! 2026-05-13T10:59:23,494 ******************************************************************************** 2026-05-13T10:59:23,495 ############################ 2026-05-13T10:59:23,495 # Package would be ignored # 2026-05-13T10:59:23,496 ############################ 2026-05-13T10:59:23,496 Python recognizes 'goatools.test_data.nbt_3102' as an importable package[^1], 2026-05-13T10:59:23,497 but it is absent from setuptools' `packages` configuration. 2026-05-13T10:59:23,498 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T10:59:23,498 package, please make sure that 'goatools.test_data.nbt_3102' is explicitly added 2026-05-13T10:59:23,499 to the `packages` configuration field. 2026-05-13T10:59:23,500 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T10:59:23,500 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T10:59:23,501 instead of `find_packages(...)`/`find:`). 2026-05-13T10:59:23,502 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T10:59:23,503 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T10:59:23,504 If you don't want 'goatools.test_data.nbt_3102' to be distributed and are 2026-05-13T10:59:23,505 already explicitly excluding 'goatools.test_data.nbt_3102' via 2026-05-13T10:59:23,505 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T10:59:23,506 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T10:59:23,506 combination with a more fine grained `package-data` configuration. 2026-05-13T10:59:23,508 You can read more about "package data files" on setuptools documentation page: 2026-05-13T10:59:23,509 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T10:59:23,510 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T10:59:23,511 even if it does not contain any `.py` files. 2026-05-13T10:59:23,511 On the other hand, currently there is no concept of package data 2026-05-13T10:59:23,512 directory, all directories are treated like packages. 2026-05-13T10:59:23,512 ******************************************************************************** 2026-05-13T10:59:23,513 !! 2026-05-13T10:59:23,514 check.warn(importable) 2026-05-13T10:59:23,515 copying goatools/.gitignore -> build/lib/goatools 2026-05-13T10:59:23,515 creating build/lib/goatools/test_data/nbt_3102 2026-05-13T10:59:23,516 copying goatools/test_data/nbt_3102/README.md -> build/lib/goatools/test_data/nbt_3102 2026-05-13T10:59:23,516 copying goatools/test_data/nbt_3102/__init__.py -> build/lib/goatools/test_data/nbt_3102 2026-05-13T10:59:23,517 copying goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-05-13T10:59:23,520 copying goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-05-13T10:59:23,523 copying goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-05-13T10:59:23,527 copying goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/lib/goatools/test_data/nbt_3102 2026-05-13T10:59:23,531 copying goatools/test_data/nbt_3102/symbol2geneid.py -> build/lib/goatools/test_data/nbt_3102 2026-05-13T10:59:23,563 installing to build/bdist.linux-armv7l/wheel 2026-05-13T10:59:23,563 running install 2026-05-13T10:59:23,587 running install_lib 2026-05-13T10:59:23,598 creating build/bdist.linux-armv7l/wheel 2026-05-13T10:59:23,601 creating build/bdist.linux-armv7l/wheel/goatools 2026-05-13T10:59:23,603 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag 2026-05-13T10:59:23,605 copying build/lib/goatools/gosubdag/go_edges.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-05-13T10:59:23,608 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag/rpt 2026-05-13T10:59:23,610 copying build/lib/goatools/gosubdag/rpt/wr_xlsx.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-05-13T10:59:23,612 copying build/lib/goatools/gosubdag/rpt/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-05-13T10:59:23,615 copying build/lib/goatools/gosubdag/rpt/write_hierarchy.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-05-13T10:59:23,617 copying build/lib/goatools/gosubdag/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-05-13T10:59:23,619 copying build/lib/goatools/gosubdag/gosubdag_init.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-05-13T10:59:23,622 copying build/lib/goatools/gosubdag/go_most_specific.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-05-13T10:59:23,624 copying build/lib/goatools/gosubdag/godag_rcnt_init.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-05-13T10:59:23,626 copying build/lib/goatools/gosubdag/gosubdag.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-05-13T10:59:23,629 copying build/lib/goatools/gosubdag/go_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-05-13T10:59:23,632 copying build/lib/goatools/gosubdag/go_paths.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-05-13T10:59:23,634 copying build/lib/goatools/gosubdag/godag_rcnt.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-05-13T10:59:23,636 copying build/lib/goatools/gosubdag/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-05-13T10:59:23,639 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag/plot 2026-05-13T10:59:23,640 copying build/lib/goatools/gosubdag/plot/go_edge.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-05-13T10:59:23,642 copying build/lib/goatools/gosubdag/plot/go_name_shorten.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-05-13T10:59:23,645 copying build/lib/goatools/gosubdag/plot/gosubdag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-05-13T10:59:23,648 copying build/lib/goatools/gosubdag/plot/plot.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-05-13T10:59:23,650 copying build/lib/goatools/gosubdag/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-05-13T10:59:23,652 copying build/lib/goatools/gosubdag/plot/go_node.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-05-13T10:59:23,655 copying build/lib/goatools/gosubdag/plot/goea_results.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-05-13T10:59:23,657 copying build/lib/goatools/gosubdag/plot/go2color.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-05-13T10:59:23,661 creating build/bdist.linux-armv7l/wheel/goatools/parsers 2026-05-13T10:59:23,662 copying build/lib/goatools/parsers/david_chart.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-05-13T10:59:23,665 copying build/lib/goatools/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-05-13T10:59:23,667 copying build/lib/goatools/parsers/ncbi_gene_file_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-05-13T10:59:23,671 creating build/bdist.linux-armv7l/wheel/goatools/rpt 2026-05-13T10:59:23,673 copying build/lib/goatools/rpt/goea_nt_xfrm.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-05-13T10:59:23,675 copying build/lib/goatools/rpt/prtfmt.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-05-13T10:59:23,678 copying build/lib/goatools/rpt/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-05-13T10:59:23,680 copying build/lib/goatools/rpt/write_hierarchy_base.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-05-13T10:59:23,683 copying build/lib/goatools/rpt/rpt_lev_depth.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-05-13T10:59:23,686 copying build/lib/goatools/rpt/nts_xfrm.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-05-13T10:59:23,688 copying build/lib/goatools/__main__.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,691 creating build/bdist.linux-armv7l/wheel/goatools/semsim 2026-05-13T10:59:23,692 copying build/lib/goatools/semsim/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim 2026-05-13T10:59:23,695 creating build/bdist.linux-armv7l/wheel/goatools/semsim/termwise 2026-05-13T10:59:23,697 copying build/lib/goatools/semsim/termwise/dag_a.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-05-13T10:59:23,699 copying build/lib/goatools/semsim/termwise/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-05-13T10:59:23,702 copying build/lib/goatools/semsim/termwise/wang.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-05-13T10:59:23,705 copying build/lib/goatools/go_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,708 copying build/lib/goatools/associations.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,711 copying build/lib/goatools/randseed.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,713 copying build/lib/goatools/statsdescribe.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,715 copying build/lib/goatools/go_search.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,718 creating build/bdist.linux-armv7l/wheel/goatools/godag 2026-05-13T10:59:23,720 copying build/lib/goatools/godag/relationship_str.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-05-13T10:59:23,722 copying build/lib/goatools/godag/relationship_combos.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-05-13T10:59:23,724 copying build/lib/goatools/godag/obo_optional_attributes.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-05-13T10:59:23,727 copying build/lib/goatools/godag/prtfncs.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-05-13T10:59:23,729 copying build/lib/goatools/godag/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-05-13T10:59:23,731 copying build/lib/goatools/godag/reldepth.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-05-13T10:59:23,734 copying build/lib/goatools/godag/go_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-05-13T10:59:23,737 copying build/lib/goatools/godag/consts.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-05-13T10:59:23,739 copying build/lib/goatools/godag/typedef.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-05-13T10:59:23,741 copying build/lib/goatools/godag/prttime.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-05-13T10:59:23,744 copying build/lib/goatools/pvalcalc.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,746 copying build/lib/goatools/version.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,748 copying build/lib/goatools/godag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,751 copying build/lib/goatools/nt_utils.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,754 copying build/lib/goatools/wr_tbl_class.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,756 copying build/lib/goatools/obo_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,758 copying build/lib/goatools/wr_tbl.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,761 copying build/lib/goatools/evidence_codes.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,763 copying build/lib/goatools/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,765 copying build/lib/goatools/.gitignore -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,767 copying build/lib/goatools/base.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,769 copying build/lib/goatools/semantic.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,772 copying build/lib/goatools/obo_parser.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,775 creating build/bdist.linux-armv7l/wheel/goatools/anno 2026-05-13T10:59:23,776 copying build/lib/goatools/anno/update_association.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,779 copying build/lib/goatools/anno/idtogos_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,781 copying build/lib/goatools/anno/dnld_ebi_goa.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,783 copying build/lib/goatools/anno/genetogo_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,785 copying build/lib/goatools/anno/gaf_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,787 copying build/lib/goatools/anno/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,789 copying build/lib/goatools/anno/annoreader_base.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,792 creating build/bdist.linux-armv7l/wheel/goatools/anno/extensions 2026-05-13T10:59:23,794 copying build/lib/goatools/anno/extensions/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-05-13T10:59:23,796 copying build/lib/goatools/anno/extensions/extensions.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-05-13T10:59:23,798 copying build/lib/goatools/anno/extensions/factory.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-05-13T10:59:23,800 copying build/lib/goatools/anno/extensions/extension.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-05-13T10:59:23,802 creating build/bdist.linux-armv7l/wheel/goatools/anno/init 2026-05-13T10:59:23,803 copying build/lib/goatools/anno/init/reader_gaf.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-05-13T10:59:23,806 copying build/lib/goatools/anno/init/reader_idtogos.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-05-13T10:59:23,809 copying build/lib/goatools/anno/init/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-05-13T10:59:23,811 copying build/lib/goatools/anno/init/reader_genetogo.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-05-13T10:59:23,813 copying build/lib/goatools/anno/init/reader_gpad.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-05-13T10:59:23,816 copying build/lib/goatools/anno/init/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-05-13T10:59:23,818 copying build/lib/goatools/anno/gpad_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,820 copying build/lib/goatools/anno/factory.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,822 copying build/lib/goatools/anno/opts.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,824 copying build/lib/goatools/anno/broad_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,827 copying build/lib/goatools/anno/eco2group.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-05-13T10:59:23,830 copying build/lib/goatools/ratio.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:23,833 creating build/bdist.linux-armv7l/wheel/goatools/test_data 2026-05-13T10:59:23,834 copying build/lib/goatools/test_data/genes_NCBI_10090_All.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:24,010 copying build/lib/goatools/test_data/gjoneska_goea_transient_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:24,105 copying build/lib/goatools/test_data/nature3102_goea.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:24,107 copying build/lib/goatools/test_data/genes_NCBI_9606_All.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:24,532 copying build/lib/goatools/test_data/sorter.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:24,535 copying build/lib/goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:24,545 copying build/lib/goatools/test_data/gjoneska_goea_transient_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:24,597 copying build/lib/goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:24,766 copying build/lib/goatools/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:24,768 copying build/lib/goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:24,860 copying build/lib/goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:25,062 copying build/lib/goatools/test_data/checks.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:25,064 copying build/lib/goatools/test_data/gjoneska_goea_late_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:25,178 copying build/lib/goatools/test_data/gjoneska_goea_late_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:25,293 copying build/lib/goatools/test_data/gafs.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:25,294 copying build/lib/goatools/test_data/wr_subobo.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:25,296 creating build/bdist.linux-armv7l/wheel/goatools/test_data/cli 2026-05-13T10:59:25,297 copying build/lib/goatools/test_data/cli/find_enrichment_dflts.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/cli 2026-05-13T10:59:25,300 copying build/lib/goatools/test_data/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/cli 2026-05-13T10:59:25,301 copying build/lib/goatools/test_data/gjoneska_goea_consistent_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:25,399 creating build/bdist.linux-armv7l/wheel/goatools/test_data/sections 2026-05-13T10:59:25,401 copying build/lib/goatools/test_data/sections/dvk2018_genefamilyclusters.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-05-13T10:59:25,403 copying build/lib/goatools/test_data/sections/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-05-13T10:59:25,405 copying build/lib/goatools/test_data/sections/gjoneska_pfenning.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-05-13T10:59:25,408 copying build/lib/goatools/test_data/sections/data2018_07_find_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-05-13T10:59:25,410 copying build/lib/goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:25,532 creating build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 2026-05-13T10:59:25,533 copying build/lib/goatools/test_data/nbt_3102/symbol2geneid.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-05-13T10:59:25,535 copying build/lib/goatools/test_data/nbt_3102/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-05-13T10:59:25,537 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-05-13T10:59:25,540 copying build/lib/goatools/test_data/nbt_3102/README.md -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-05-13T10:59:25,542 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-05-13T10:59:25,544 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-05-13T10:59:25,547 copying build/lib/goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-05-13T10:59:25,549 copying build/lib/goatools/test_data/godag_timed.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-05-13T10:59:25,551 copying build/lib/goatools/multiple_testing.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:25,554 creating build/bdist.linux-armv7l/wheel/goatools/grouper 2026-05-13T10:59:25,555 copying build/lib/goatools/grouper/wr_sections.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,557 copying build/lib/goatools/grouper/grprobj_init.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,560 copying build/lib/goatools/grouper/wrxlsx.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,562 copying build/lib/goatools/grouper/aart_geneproducts_all.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,564 copying build/lib/goatools/grouper/grprplt.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,566 copying build/lib/goatools/grouper/sorter.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,568 copying build/lib/goatools/grouper/sorter_nts.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,570 copying build/lib/goatools/grouper/aart_geneproducts_one.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,572 copying build/lib/goatools/grouper/plotobj.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,574 copying build/lib/goatools/grouper/grprdflts.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,576 copying build/lib/goatools/grouper/read_goids.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,578 copying build/lib/goatools/grouper/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,580 copying build/lib/goatools/grouper/sorter_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,582 copying build/lib/goatools/grouper/grprobj.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,584 copying build/lib/goatools/grouper/tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,586 copying build/lib/goatools/grouper/colors.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,588 copying build/lib/goatools/grouper/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,590 copying build/lib/goatools/grouper/hdrgos.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-05-13T10:59:25,592 creating build/bdist.linux-armv7l/wheel/goatools/cli 2026-05-13T10:59:25,593 copying build/lib/goatools/cli/wr_sections.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,596 copying build/lib/goatools/cli/docopt_parse.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,598 copying build/lib/goatools/cli/gosubdag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,601 copying build/lib/goatools/cli/main.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,603 copying build/lib/goatools/cli/wr_hierarchy.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,605 copying build/lib/goatools/cli/prt_terms.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,607 copying build/lib/goatools/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,609 copying build/lib/goatools/cli/fetch_associations.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,611 copying build/lib/goatools/cli/grouped.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,612 copying build/lib/goatools/cli/find_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,615 copying build/lib/goatools/cli/compare_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,617 copying build/lib/goatools/cli/gos_get.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,619 copying build/lib/goatools/cli/plot_go_term.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,621 copying build/lib/goatools/cli/ncbi_gene_results_to_python.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,623 copying build/lib/goatools/cli/map_to_slim.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-05-13T10:59:25,625 copying build/lib/goatools/godag_small.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:25,626 copying build/lib/goatools/mapslim.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:25,628 creating build/bdist.linux-armv7l/wheel/goatools/goea 2026-05-13T10:59:25,629 copying build/lib/goatools/goea/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/goea 2026-05-13T10:59:25,631 copying build/lib/goatools/goea/go_enrichment_ns.py -> build/bdist.linux-armv7l/wheel/./goatools/goea 2026-05-13T10:59:25,633 copying build/lib/goatools/godag_obosm.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:25,635 copying build/lib/goatools/utils.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-05-13T10:59:25,636 running install_egg_info 2026-05-13T10:59:25,647 Copying goatools.egg-info to build/bdist.linux-armv7l/wheel/./goatools-1.6.5-py3.11.egg-info 2026-05-13T10:59:25,658 running install_scripts 2026-05-13T10:59:25,670 creating build/bdist.linux-armv7l/wheel/goatools-1.6.5.dist-info/WHEEL 2026-05-13T10:59:25,673 creating '/tmp/pip-wheel-c24ho55i/.tmp-3nnr_v2e/goatools-1.6.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-13T10:59:25,676 adding 'goatools/.gitignore' 2026-05-13T10:59:25,677 adding 'goatools/__init__.py' 2026-05-13T10:59:25,678 adding 'goatools/__main__.py' 2026-05-13T10:59:25,680 adding 'goatools/associations.py' 2026-05-13T10:59:25,682 adding 'goatools/base.py' 2026-05-13T10:59:25,684 adding 'goatools/evidence_codes.py' 2026-05-13T10:59:25,688 adding 'goatools/go_enrichment.py' 2026-05-13T10:59:25,690 adding 'goatools/go_search.py' 2026-05-13T10:59:25,691 adding 'goatools/godag_obosm.py' 2026-05-13T10:59:25,693 adding 'goatools/godag_plot.py' 2026-05-13T10:59:25,695 adding 'goatools/godag_small.py' 2026-05-13T10:59:25,696 adding 'goatools/mapslim.py' 2026-05-13T10:59:25,698 adding 'goatools/multiple_testing.py' 2026-05-13T10:59:25,700 adding 'goatools/nt_utils.py' 2026-05-13T10:59:25,703 adding 'goatools/obo_parser.py' 2026-05-13T10:59:25,704 adding 'goatools/obo_tasks.py' 2026-05-13T10:59:25,706 adding 'goatools/pvalcalc.py' 2026-05-13T10:59:25,707 adding 'goatools/randseed.py' 2026-05-13T10:59:25,709 adding 'goatools/ratio.py' 2026-05-13T10:59:25,711 adding 'goatools/semantic.py' 2026-05-13T10:59:25,713 adding 'goatools/statsdescribe.py' 2026-05-13T10:59:25,714 adding 'goatools/utils.py' 2026-05-13T10:59:25,715 adding 'goatools/version.py' 2026-05-13T10:59:25,717 adding 'goatools/wr_tbl.py' 2026-05-13T10:59:25,719 adding 'goatools/wr_tbl_class.py' 2026-05-13T10:59:25,721 adding 'goatools/anno/__init__.py' 2026-05-13T10:59:25,723 adding 'goatools/anno/annoreader_base.py' 2026-05-13T10:59:25,726 adding 'goatools/anno/broad_gos.py' 2026-05-13T10:59:25,727 adding 'goatools/anno/dnld_ebi_goa.py' 2026-05-13T10:59:25,730 adding 'goatools/anno/eco2group.py' 2026-05-13T10:59:25,731 adding 'goatools/anno/factory.py' 2026-05-13T10:59:25,733 adding 'goatools/anno/gaf_reader.py' 2026-05-13T10:59:25,734 adding 'goatools/anno/genetogo_reader.py' 2026-05-13T10:59:25,735 adding 'goatools/anno/gpad_reader.py' 2026-05-13T10:59:25,737 adding 'goatools/anno/idtogos_reader.py' 2026-05-13T10:59:25,738 adding 'goatools/anno/opts.py' 2026-05-13T10:59:25,740 adding 'goatools/anno/update_association.py' 2026-05-13T10:59:25,741 adding 'goatools/anno/extensions/__init__.py' 2026-05-13T10:59:25,742 adding 'goatools/anno/extensions/extension.py' 2026-05-13T10:59:25,744 adding 'goatools/anno/extensions/extensions.py' 2026-05-13T10:59:25,745 adding 'goatools/anno/extensions/factory.py' 2026-05-13T10:59:25,746 adding 'goatools/anno/init/__init__.py' 2026-05-13T10:59:25,749 adding 'goatools/anno/init/reader_gaf.py' 2026-05-13T10:59:25,751 adding 'goatools/anno/init/reader_genetogo.py' 2026-05-13T10:59:25,753 adding 'goatools/anno/init/reader_gpad.py' 2026-05-13T10:59:25,755 adding 'goatools/anno/init/reader_idtogos.py' 2026-05-13T10:59:25,756 adding 'goatools/anno/init/utils.py' 2026-05-13T10:59:25,758 adding 'goatools/cli/__init__.py' 2026-05-13T10:59:25,760 adding 'goatools/cli/compare_gos.py' 2026-05-13T10:59:25,762 adding 'goatools/cli/docopt_parse.py' 2026-05-13T10:59:25,763 adding 'goatools/cli/fetch_associations.py' 2026-05-13T10:59:25,767 adding 'goatools/cli/find_enrichment.py' 2026-05-13T10:59:25,769 adding 'goatools/cli/gos_get.py' 2026-05-13T10:59:25,771 adding 'goatools/cli/gosubdag_plot.py' 2026-05-13T10:59:25,773 adding 'goatools/cli/grouped.py' 2026-05-13T10:59:25,774 adding 'goatools/cli/main.py' 2026-05-13T10:59:25,775 adding 'goatools/cli/map_to_slim.py' 2026-05-13T10:59:25,777 adding 'goatools/cli/ncbi_gene_results_to_python.py' 2026-05-13T10:59:25,778 adding 'goatools/cli/plot_go_term.py' 2026-05-13T10:59:25,780 adding 'goatools/cli/prt_terms.py' 2026-05-13T10:59:25,781 adding 'goatools/cli/wr_hierarchy.py' 2026-05-13T10:59:25,783 adding 'goatools/cli/wr_sections.py' 2026-05-13T10:59:25,785 adding 'goatools/godag/__init__.py' 2026-05-13T10:59:25,786 adding 'goatools/godag/consts.py' 2026-05-13T10:59:25,788 adding 'goatools/godag/go_tasks.py' 2026-05-13T10:59:25,790 adding 'goatools/godag/obo_optional_attributes.py' 2026-05-13T10:59:25,791 adding 'goatools/godag/prtfncs.py' 2026-05-13T10:59:25,793 adding 'goatools/godag/prttime.py' 2026-05-13T10:59:25,794 adding 'goatools/godag/relationship_combos.py' 2026-05-13T10:59:25,796 adding 'goatools/godag/relationship_str.py' 2026-05-13T10:59:25,797 adding 'goatools/godag/reldepth.py' 2026-05-13T10:59:25,798 adding 'goatools/godag/typedef.py' 2026-05-13T10:59:25,800 adding 'goatools/goea/__init__.py' 2026-05-13T10:59:25,801 adding 'goatools/goea/go_enrichment_ns.py' 2026-05-13T10:59:25,803 adding 'goatools/gosubdag/__init__.py' 2026-05-13T10:59:25,805 adding 'goatools/gosubdag/go_edges.py' 2026-05-13T10:59:25,807 adding 'goatools/gosubdag/go_most_specific.py' 2026-05-13T10:59:25,808 adding 'goatools/gosubdag/go_paths.py' 2026-05-13T10:59:25,810 adding 'goatools/gosubdag/go_tasks.py' 2026-05-13T10:59:25,812 adding 'goatools/gosubdag/godag_rcnt.py' 2026-05-13T10:59:25,813 adding 'goatools/gosubdag/godag_rcnt_init.py' 2026-05-13T10:59:25,815 adding 'goatools/gosubdag/gosubdag.py' 2026-05-13T10:59:25,817 adding 'goatools/gosubdag/gosubdag_init.py' 2026-05-13T10:59:25,818 adding 'goatools/gosubdag/utils.py' 2026-05-13T10:59:25,820 adding 'goatools/gosubdag/plot/__init__.py' 2026-05-13T10:59:25,821 adding 'goatools/gosubdag/plot/go2color.py' 2026-05-13T10:59:25,823 adding 'goatools/gosubdag/plot/go_edge.py' 2026-05-13T10:59:25,824 adding 'goatools/gosubdag/plot/go_name_shorten.py' 2026-05-13T10:59:25,826 adding 'goatools/gosubdag/plot/go_node.py' 2026-05-13T10:59:25,828 adding 'goatools/gosubdag/plot/goea_results.py' 2026-05-13T10:59:25,830 adding 'goatools/gosubdag/plot/gosubdag_plot.py' 2026-05-13T10:59:25,831 adding 'goatools/gosubdag/plot/plot.py' 2026-05-13T10:59:25,833 adding 'goatools/gosubdag/rpt/__init__.py' 2026-05-13T10:59:25,835 adding 'goatools/gosubdag/rpt/wr_xlsx.py' 2026-05-13T10:59:25,836 adding 'goatools/gosubdag/rpt/write_hierarchy.py' 2026-05-13T10:59:25,838 adding 'goatools/grouper/__init__.py' 2026-05-13T10:59:25,840 adding 'goatools/grouper/aart_geneproducts_all.py' 2026-05-13T10:59:25,842 adding 'goatools/grouper/aart_geneproducts_one.py' 2026-05-13T10:59:25,843 adding 'goatools/grouper/colors.py' 2026-05-13T10:59:25,844 adding 'goatools/grouper/grprdflts.py' 2026-05-13T10:59:25,846 adding 'goatools/grouper/grprobj.py' 2026-05-13T10:59:25,851 adding 'goatools/grouper/grprobj_init.py' 2026-05-13T10:59:25,853 adding 'goatools/grouper/grprplt.py' 2026-05-13T10:59:25,854 adding 'goatools/grouper/hdrgos.py' 2026-05-13T10:59:25,856 adding 'goatools/grouper/plotobj.py' 2026-05-13T10:59:25,858 adding 'goatools/grouper/read_goids.py' 2026-05-13T10:59:25,860 adding 'goatools/grouper/sorter.py' 2026-05-13T10:59:25,862 adding 'goatools/grouper/sorter_gos.py' 2026-05-13T10:59:25,863 adding 'goatools/grouper/sorter_nts.py' 2026-05-13T10:59:25,865 adding 'goatools/grouper/tasks.py' 2026-05-13T10:59:25,866 adding 'goatools/grouper/utils.py' 2026-05-13T10:59:25,868 adding 'goatools/grouper/wr_sections.py' 2026-05-13T10:59:25,870 adding 'goatools/grouper/wrxlsx.py' 2026-05-13T10:59:25,871 adding 'goatools/parsers/__init__.py' 2026-05-13T10:59:25,873 adding 'goatools/parsers/david_chart.py' 2026-05-13T10:59:25,875 adding 'goatools/parsers/ncbi_gene_file_reader.py' 2026-05-13T10:59:25,877 adding 'goatools/rpt/__init__.py' 2026-05-13T10:59:25,878 adding 'goatools/rpt/goea_nt_xfrm.py' 2026-05-13T10:59:25,879 adding 'goatools/rpt/nts_xfrm.py' 2026-05-13T10:59:25,881 adding 'goatools/rpt/prtfmt.py' 2026-05-13T10:59:25,883 adding 'goatools/rpt/rpt_lev_depth.py' 2026-05-13T10:59:25,884 adding 'goatools/rpt/write_hierarchy_base.py' 2026-05-13T10:59:25,886 adding 'goatools/semsim/__init__.py' 2026-05-13T10:59:25,888 adding 'goatools/semsim/termwise/__init__.py' 2026-05-13T10:59:25,889 adding 'goatools/semsim/termwise/dag_a.py' 2026-05-13T10:59:25,891 adding 'goatools/semsim/termwise/wang.py' 2026-05-13T10:59:25,893 adding 'goatools/test_data/__init__.py' 2026-05-13T10:59:25,894 adding 'goatools/test_data/checks.py' 2026-05-13T10:59:25,896 adding 'goatools/test_data/gafs.py' 2026-05-13T10:59:26,663 adding 'goatools/test_data/genes_NCBI_10090_All.py' 2026-05-13T10:59:27,626 adding 'goatools/test_data/genes_NCBI_10090_ProteinCoding.py' 2026-05-13T10:59:28,281 adding 'goatools/test_data/genes_NCBI_7227_ProteinCoding.py' 2026-05-13T10:59:30,074 adding 'goatools/test_data/genes_NCBI_9606_All.py' 2026-05-13T10:59:31,099 adding 'goatools/test_data/genes_NCBI_9606_ProteinCoding.py' 2026-05-13T10:59:31,222 adding 'goatools/test_data/gjoneska_2015_ensmusg2symbol.py' 2026-05-13T10:59:31,591 adding 'goatools/test_data/gjoneska_goea_consistent_decrease.py' 2026-05-13T10:59:31,986 adding 'goatools/test_data/gjoneska_goea_consistent_increase.py' 2026-05-13T10:59:32,410 adding 'goatools/test_data/gjoneska_goea_late_decrease.py' 2026-05-13T10:59:32,889 adding 'goatools/test_data/gjoneska_goea_late_increase.py' 2026-05-13T10:59:33,149 adding 'goatools/test_data/gjoneska_goea_transient_decrease.py' 2026-05-13T10:59:33,471 adding 'goatools/test_data/gjoneska_goea_transient_increase.py' 2026-05-13T10:59:33,504 adding 'goatools/test_data/godag_timed.py' 2026-05-13T10:59:33,505 adding 'goatools/test_data/nature3102_goea.py' 2026-05-13T10:59:33,507 adding 'goatools/test_data/sorter.py' 2026-05-13T10:59:33,509 adding 'goatools/test_data/wr_subobo.py' 2026-05-13T10:59:33,511 adding 'goatools/test_data/cli/__init__.py' 2026-05-13T10:59:33,512 adding 'goatools/test_data/cli/find_enrichment_dflts.py' 2026-05-13T10:59:33,514 adding 'goatools/test_data/nbt_3102/README.md' 2026-05-13T10:59:33,515 adding 'goatools/test_data/nbt_3102/__init__.py' 2026-05-13T10:59:33,520 adding 'goatools/test_data/nbt_3102/nbt.3102-S4.xlsx' 2026-05-13T10:59:33,524 adding 'goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx' 2026-05-13T10:59:33,528 adding 'goatools/test_data/nbt_3102/nbt.3102-S6.xlsx' 2026-05-13T10:59:33,530 adding 'goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt' 2026-05-13T10:59:33,532 adding 'goatools/test_data/nbt_3102/symbol2geneid.py' 2026-05-13T10:59:33,534 adding 'goatools/test_data/sections/__init__.py' 2026-05-13T10:59:33,536 adding 'goatools/test_data/sections/data2018_07_find_enrichment.py' 2026-05-13T10:59:33,539 adding 'goatools/test_data/sections/dvk2018_genefamilyclusters.py' 2026-05-13T10:59:33,541 adding 'goatools/test_data/sections/gjoneska_pfenning.py' 2026-05-13T10:59:33,544 adding 'goatools-1.6.5.dist-info/licenses/LICENSE' 2026-05-13T10:59:33,546 adding 'goatools-1.6.5.dist-info/METADATA' 2026-05-13T10:59:33,547 adding 'goatools-1.6.5.dist-info/WHEEL' 2026-05-13T10:59:33,548 adding 'goatools-1.6.5.dist-info/entry_points.txt' 2026-05-13T10:59:33,549 adding 'goatools-1.6.5.dist-info/top_level.txt' 2026-05-13T10:59:33,552 adding 'goatools-1.6.5.dist-info/RECORD' 2026-05-13T10:59:33,725 removing build/bdist.linux-armv7l/wheel 2026-05-13T10:59:33,909 Building wheel for goatools (pyproject.toml): finished with status 'done' 2026-05-13T10:59:34,274 Created wheel for goatools: filename=goatools-1.6.5-py3-none-any.whl size=15768926 sha256=a40409779d95e00c5f01c690ad8e121bd46fa6060b9ab09d657238ea6765f0b3 2026-05-13T10:59:34,275 Stored in directory: /tmp/pip-ephem-wheel-cache-wtud92d6/wheels/15/1b/bb/57697b9f3187548f52d5bdb855b840079ab5cc8d7249bd0d23 2026-05-13T10:59:34,297 Successfully built goatools 2026-05-13T10:59:34,735 Removed build tracker: '/tmp/pip-build-tracker-2tfhurli'