2026-05-13T13:38:58,105 Created temporary directory: /tmp/pip-ephem-wheel-cache-ebgt1hl2
2026-05-13T13:38:58,107 Created temporary directory: /tmp/pip-build-tracker-swci6zar
2026-05-13T13:38:58,108 Initialized build tracking at /tmp/pip-build-tracker-swci6zar
2026-05-13T13:38:58,108 Created build tracker: /tmp/pip-build-tracker-swci6zar
2026-05-13T13:38:58,109 Entered build tracker: /tmp/pip-build-tracker-swci6zar
2026-05-13T13:38:58,109 Created temporary directory: /tmp/pip-wheel-1uv81pd7
2026-05-13T13:38:58,112 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-13T13:38:58,115 Created temporary directory: /tmp/pip-ephem-wheel-cache-l2xqdqyo
2026-05-13T13:38:58,136 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-13T13:38:58,139 2 location(s) to search for versions of acellera-htmd:
2026-05-13T13:38:58,139 * https://pypi.org/simple/acellera-htmd/
2026-05-13T13:38:58,139 * https://www.piwheels.org/simple/acellera-htmd/
2026-05-13T13:38:58,140 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/
2026-05-13T13:38:58,141 Getting page https://pypi.org/simple/acellera-htmd/
2026-05-13T13:38:58,142 Found index url https://pypi.org/simple
2026-05-13T13:38:58,374 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json
2026-05-13T13:38:58,377   Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2
2026-05-13T13:38:58,378   Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4
2026-05-13T13:38:58,379   Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5
2026-05-13T13:38:58,380   Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6
2026-05-13T13:38:58,381   Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8
2026-05-13T13:38:58,382   Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9
2026-05-13T13:38:58,383   Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0
2026-05-13T13:38:58,384   Found link https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.1
2026-05-13T13:38:58,385   Found link https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.2
2026-05-13T13:38:58,386   Found link https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.3
2026-05-13T13:38:58,387   Found link https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.4
2026-05-13T13:38:58,388   Found link https://files.pythonhosted.org/packages/0f/6b/33aaeb43df7e5b74f5070ddd7ebdd18076821ccdadc3f529c50436d9d008/acellera_htmd-2.6.5.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.5
2026-05-13T13:38:58,389   Found link https://files.pythonhosted.org/packages/b3/a6/c2e5b33d5c296f1277038a88421d1a5f265aa0bc614fb5dcd7c041936ec2/acellera_htmd-2.7.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.0
2026-05-13T13:38:58,390   Found link https://files.pythonhosted.org/packages/dc/e5/90f20a69067a35bceeb16ad0d05bd7d11890e619053858f07a284c7a7be0/acellera_htmd-2.7.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.1
2026-05-13T13:38:58,391   Found link https://files.pythonhosted.org/packages/fc/29/822cbadb48f1f2a00b28ed13fa91ff69ab8f959c76469bde4727bc580a08/acellera_htmd-2.7.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.2
2026-05-13T13:38:58,391 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/
2026-05-13T13:38:58,392 Getting page https://www.piwheels.org/simple/acellera-htmd/
2026-05-13T13:38:58,393 Found index url https://www.piwheels.org/simple
2026-05-13T13:39:04,582 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html
2026-05-13T13:39:04,589   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.7.1-py3-none-any.whl#sha256=6f36f06960c7426c2cf2b06618e3d8cac0a977c4aa617ddb7751af386ad0ef96 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-13T13:39:04,590   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.7.0-py3-none-any.whl#sha256=404da5fc40b9411322f14455aebe19e3e684401fd2608a4fcf08b1f88762f2db (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-13T13:39:04,591   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.5-py3-none-any.whl#sha256=6a4478ef428c11d897f8bed0691db4c073ee7b0cc080975f0ce3794bb17152be (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-13T13:39:04,592   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.4-py3-none-any.whl#sha256=66c7d8d0f505d9c4515b9d989a0710120d27ef39bb24537b9729224bf711dcb6 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-13T13:39:04,593   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.3-py3-none-any.whl#sha256=32d22acbcd9e7adb5730ba97d1fe4de785a0814f14fd802980d53208fc6e291b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-13T13:39:04,593   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.2-py3-none-any.whl#sha256=eb4bab0a119829d1bc40fbb9918fd5ca3ed48922a4ebe7228717cf8de4aa1427 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-13T13:39:04,594   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.1-py3-none-any.whl#sha256=276acfba7f712b652f35f6ce7279fe2885edf66bce30142e45deb90188a58cfb (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-13T13:39:04,595   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.0-py3-none-any.whl#sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-13T13:39:04,596   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-13T13:39:04,597   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-05-13T13:39:04,597   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/)
2026-05-13T13:39:04,598 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/
2026-05-13T13:39:04,599 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/
2026-05-13T13:39:04,632 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates
2026-05-13T13:39:04,656 Collecting acellera-htmd==2.7.2
2026-05-13T13:39:04,658   Created temporary directory: /tmp/pip-unpack-7o2siga6
2026-05-13T13:39:04,902   Downloading acellera_htmd-2.7.2.tar.gz (4.1 MB)
2026-05-13T13:39:07,044   Added acellera-htmd==2.7.2 from https://files.pythonhosted.org/packages/fc/29/822cbadb48f1f2a00b28ed13fa91ff69ab8f959c76469bde4727bc580a08/acellera_htmd-2.7.2.tar.gz to build tracker '/tmp/pip-build-tracker-swci6zar'
2026-05-13T13:39:07,050   Created temporary directory: /tmp/pip-build-env-6yiwolow
2026-05-13T13:39:07,054   Installing build dependencies: started
2026-05-13T13:39:07,055   Running command pip subprocess to install build dependencies
2026-05-13T13:39:08,173   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-05-13T13:39:08,585   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-13T13:39:08,608   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-13T13:39:10,422   Collecting setuptools
2026-05-13T13:39:10,423     Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-05-13T13:39:10,441     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-05-13T13:39:10,784   Collecting setuptools-scm>=8
2026-05-13T13:39:10,785     Obtaining dependency information for setuptools-scm>=8 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata
2026-05-13T13:39:10,801     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB)
2026-05-13T13:39:10,884   Collecting vcs-versioning>=1.0.0.dev0
2026-05-13T13:39:10,885     Obtaining dependency information for vcs-versioning>=1.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata
2026-05-13T13:39:10,900     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata (1.6 kB)
2026-05-13T13:39:11,084   Collecting packaging>=20
2026-05-13T13:39:11,084     Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-05-13T13:39:11,099     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-05-13T13:39:11,306   Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-05-13T13:39:11,334   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-05-13T13:39:11,357   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-05-13T13:39:11,454   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-05-13T13:39:11,492   Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-05-13T13:39:11,522   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-05-13T13:39:11,552   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-05-13T13:39:11,641   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-05-13T13:39:14,446   Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm
2026-05-13T13:39:18,001     Creating /tmp/pip-build-env-6yiwolow/overlay/local/bin
2026-05-13T13:39:18,003     changing mode of /tmp/pip-build-env-6yiwolow/overlay/local/bin/vcs-versioning to 755
2026-05-13T13:39:18,108     changing mode of /tmp/pip-build-env-6yiwolow/overlay/local/bin/setuptools-scm to 755
2026-05-13T13:39:18,135   Successfully installed packaging-26.2 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1
2026-05-13T13:39:18,437   Installing build dependencies: finished with status 'done'
2026-05-13T13:39:18,443   Getting requirements to build wheel: started
2026-05-13T13:39:18,444   Running command Getting requirements to build wheel
2026-05-13T13:39:19,233   running egg_info
2026-05-13T13:39:19,240   writing acellera_htmd.egg-info/PKG-INFO
2026-05-13T13:39:19,245   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-05-13T13:39:19,247   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-05-13T13:39:19,251   writing requirements to acellera_htmd.egg-info/requires.txt
2026-05-13T13:39:19,252   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-05-13T13:39:19,362   /tmp/pip-build-env-6yiwolow/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-13T13:39:19,363     return get_active_overrides().subprocess_timeout
2026-05-13T13:39:19,370   listing git files failed - pretending there aren't any
2026-05-13T13:39:19,375   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-13T13:39:19,396   reading manifest template 'MANIFEST.in'
2026-05-13T13:39:19,422   no previously-included directories found matching 'htmd/data'
2026-05-13T13:39:19,424   no previously-included directories found matching '.github'
2026-05-13T13:39:19,425   no previously-included directories found matching 'doc'
2026-05-13T13:39:19,426   no previously-included directories found matching 'package'
2026-05-13T13:39:19,427   no previously-included directories found matching 'tests'
2026-05-13T13:39:19,429   no previously-included directories found matching 'tutorials'
2026-05-13T13:39:19,430   warning: no previously-included files found matching 'Makefile'
2026-05-13T13:39:19,430   adding license file 'LICENSE'
2026-05-13T13:39:19,454   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-13T13:39:19,562   Getting requirements to build wheel: finished with status 'done'
2026-05-13T13:39:19,566   Created temporary directory: /tmp/pip-modern-metadata-r90def46
2026-05-13T13:39:19,568   Preparing metadata (pyproject.toml): started
2026-05-13T13:39:19,569   Running command Preparing metadata (pyproject.toml)
2026-05-13T13:39:20,302   running dist_info
2026-05-13T13:39:20,316   creating /tmp/pip-modern-metadata-r90def46/acellera_htmd.egg-info
2026-05-13T13:39:20,316   writing /tmp/pip-modern-metadata-r90def46/acellera_htmd.egg-info/PKG-INFO
2026-05-13T13:39:20,322   writing dependency_links to /tmp/pip-modern-metadata-r90def46/acellera_htmd.egg-info/dependency_links.txt
2026-05-13T13:39:20,323   writing entry points to /tmp/pip-modern-metadata-r90def46/acellera_htmd.egg-info/entry_points.txt
2026-05-13T13:39:20,327   writing requirements to /tmp/pip-modern-metadata-r90def46/acellera_htmd.egg-info/requires.txt
2026-05-13T13:39:20,328   writing top-level names to /tmp/pip-modern-metadata-r90def46/acellera_htmd.egg-info/top_level.txt
2026-05-13T13:39:20,329   writing manifest file '/tmp/pip-modern-metadata-r90def46/acellera_htmd.egg-info/SOURCES.txt'
2026-05-13T13:39:20,418   /tmp/pip-build-env-6yiwolow/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-13T13:39:20,418     return get_active_overrides().subprocess_timeout
2026-05-13T13:39:20,424   listing git files failed - pretending there aren't any
2026-05-13T13:39:20,429   reading manifest file '/tmp/pip-modern-metadata-r90def46/acellera_htmd.egg-info/SOURCES.txt'
2026-05-13T13:39:20,430   reading manifest template 'MANIFEST.in'
2026-05-13T13:39:20,457   no previously-included directories found matching 'htmd/data'
2026-05-13T13:39:20,458   no previously-included directories found matching '.github'
2026-05-13T13:39:20,459   no previously-included directories found matching 'doc'
2026-05-13T13:39:20,460   no previously-included directories found matching 'package'
2026-05-13T13:39:20,460   no previously-included directories found matching 'tests'
2026-05-13T13:39:20,461   no previously-included directories found matching 'tutorials'
2026-05-13T13:39:20,462   warning: no previously-included files found matching 'Makefile'
2026-05-13T13:39:20,463   adding license file 'LICENSE'
2026-05-13T13:39:20,482   writing manifest file '/tmp/pip-modern-metadata-r90def46/acellera_htmd.egg-info/SOURCES.txt'
2026-05-13T13:39:20,483   creating '/tmp/pip-modern-metadata-r90def46/acellera_htmd-2.7.2.dist-info'
2026-05-13T13:39:20,619   Preparing metadata (pyproject.toml): finished with status 'done'
2026-05-13T13:39:20,624   Source in /tmp/pip-wheel-1uv81pd7/acellera-htmd_6412959bb5aa47769b998bb72344abe6 has version 2.7.2, which satisfies requirement acellera-htmd==2.7.2 from https://files.pythonhosted.org/packages/fc/29/822cbadb48f1f2a00b28ed13fa91ff69ab8f959c76469bde4727bc580a08/acellera_htmd-2.7.2.tar.gz
2026-05-13T13:39:20,625   Removed acellera-htmd==2.7.2 from https://files.pythonhosted.org/packages/fc/29/822cbadb48f1f2a00b28ed13fa91ff69ab8f959c76469bde4727bc580a08/acellera_htmd-2.7.2.tar.gz from build tracker '/tmp/pip-build-tracker-swci6zar'
2026-05-13T13:39:20,631 Created temporary directory: /tmp/pip-unpack-qnr6_6ts
2026-05-13T13:39:20,631 Building wheels for collected packages: acellera-htmd
2026-05-13T13:39:20,636   Created temporary directory: /tmp/pip-wheel-pfo42q0y
2026-05-13T13:39:20,636   Destination directory: /tmp/pip-wheel-pfo42q0y
2026-05-13T13:39:20,638   Building wheel for acellera-htmd (pyproject.toml): started
2026-05-13T13:39:20,640   Running command Building wheel for acellera-htmd (pyproject.toml)
2026-05-13T13:39:21,346   running bdist_wheel
2026-05-13T13:39:21,370   running build
2026-05-13T13:39:21,371   running build_py
2026-05-13T13:39:21,373   creating build/lib/htmd
2026-05-13T13:39:21,375   copying htmd/mutualinformation.py -> build/lib/htmd
2026-05-13T13:39:21,378   copying htmd/__init__.py -> build/lib/htmd
2026-05-13T13:39:21,380   copying htmd/model.py -> build/lib/htmd
2026-05-13T13:39:21,383   copying htmd/session.py -> build/lib/htmd
2026-05-13T13:39:21,385   copying htmd/parallelprogress.py -> build/lib/htmd
2026-05-13T13:39:21,387   copying htmd/kinetics.py -> build/lib/htmd
2026-05-13T13:39:21,390   copying htmd/config.py -> build/lib/htmd
2026-05-13T13:39:21,392   copying htmd/dock.py -> build/lib/htmd
2026-05-13T13:39:21,394   copying htmd/metricdatagenerator.py -> build/lib/htmd
2026-05-13T13:39:21,396   copying htmd/ui.py -> build/lib/htmd
2026-05-13T13:39:21,398   copying htmd/simlist.py -> build/lib/htmd
2026-05-13T13:39:21,401   copying htmd/units.py -> build/lib/htmd
2026-05-13T13:39:21,402   copying htmd/versionwarnings.py -> build/lib/htmd
2026-05-13T13:39:21,404   copying htmd/util.py -> build/lib/htmd
2026-05-13T13:39:21,406   copying htmd/license.py -> build/lib/htmd
2026-05-13T13:39:21,408   copying htmd/home.py -> build/lib/htmd
2026-05-13T13:39:21,410   copying htmd/metricdata.py -> build/lib/htmd
2026-05-13T13:39:21,413   copying htmd/latest.py -> build/lib/htmd
2026-05-13T13:39:21,415   copying htmd/decorators.py -> build/lib/htmd
2026-05-13T13:39:21,416   copying htmd/pathplanning.py -> build/lib/htmd
2026-05-13T13:39:21,419   creating build/lib/htmd/clustering
2026-05-13T13:39:21,420   copying htmd/clustering/__init__.py -> build/lib/htmd/clustering
2026-05-13T13:39:21,422   copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering
2026-05-13T13:39:21,424   copying htmd/clustering/regular.py -> build/lib/htmd/clustering
2026-05-13T13:39:21,427   creating build/lib/htmd/adaptive
2026-05-13T13:39:21,429   copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive
2026-05-13T13:39:21,431   copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive
2026-05-13T13:39:21,434   copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive
2026-05-13T13:39:21,436   copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive
2026-05-13T13:39:21,438   copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive
2026-05-13T13:39:21,441   copying htmd/adaptive/util.py -> build/lib/htmd/adaptive
2026-05-13T13:39:21,443   copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive
2026-05-13T13:39:21,446   creating build/lib/htmd/projections
2026-05-13T13:39:21,447   copying htmd/projections/__init__.py -> build/lib/htmd/projections
2026-05-13T13:39:21,449   copying htmd/projections/gwpca.py -> build/lib/htmd/projections
2026-05-13T13:39:21,451   copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections
2026-05-13T13:39:21,452   copying htmd/projections/tica.py -> build/lib/htmd/projections
2026-05-13T13:39:21,455   copying htmd/projections/metric.py -> build/lib/htmd/projections
2026-05-13T13:39:21,458   creating build/lib/htmd/builder
2026-05-13T13:39:21,459   copying htmd/builder/ionize.py -> build/lib/htmd/builder
2026-05-13T13:39:21,462   copying htmd/builder/__init__.py -> build/lib/htmd/builder
2026-05-13T13:39:21,463   copying htmd/builder/charmm.py -> build/lib/htmd/builder
2026-05-13T13:39:21,466   copying htmd/builder/nonstandard.py -> build/lib/htmd/builder
2026-05-13T13:39:21,470   copying htmd/builder/noncanonical.py -> build/lib/htmd/builder
2026-05-13T13:39:21,472   copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder
2026-05-13T13:39:21,474   copying htmd/builder/amber.py -> build/lib/htmd/builder
2026-05-13T13:39:21,478   copying htmd/builder/builder.py -> build/lib/htmd/builder
2026-05-13T13:39:21,480   copying htmd/builder/solvate.py -> build/lib/htmd/builder
2026-05-13T13:39:21,483   creating build/lib/htmd/membranebuilder
2026-05-13T13:39:21,484   copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder
2026-05-13T13:39:21,488   copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder
2026-05-13T13:39:21,490   copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder
2026-05-13T13:39:21,493   copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder
2026-05-13T13:39:21,495   copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder
2026-05-13T13:39:21,546   creating build/lib/htmd/share
2026-05-13T13:39:21,547   copying htmd/share/license-checker -> build/lib/htmd/share
2026-05-13T13:39:21,557   creating build/lib/htmd/share/builder
2026-05-13T13:39:21,558   copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder
2026-05-13T13:39:21,563   copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder
2026-05-13T13:39:21,566   copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder
2026-05-13T13:39:21,568   creating build/lib/htmd/share/builder/charmmfiles
2026-05-13T13:39:21,569   copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles
2026-05-13T13:39:21,571   copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles
2026-05-13T13:39:21,573   creating build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,574   copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,578   copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,620   copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,623   copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,626   copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,632   copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,638   copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,641   copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,645   copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,652   copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:21,675   creating build/lib/htmd/share/builder/charmmfiles/str
2026-05-13T13:39:21,676   copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str
2026-05-13T13:39:21,679   creating build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:21,680   copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:21,683   copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:21,685   copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:21,688   copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:21,690   copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:21,692   creating build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:21,693   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:21,697   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:21,703   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:21,724   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:21,730   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:21,739   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:21,762   creating build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,763   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,767   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,771   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,791   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,795   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,836   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,840   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,872   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,880   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,885   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,890   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,915   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,923   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,926   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,933   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,936   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,942   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,952   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,975   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:21,993   creating build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:21,994   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:22,000   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:22,003   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:22,033   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:22,038   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:22,062   creating build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-05-13T13:39:22,063   copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-05-13T13:39:22,065   creating build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,066   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,069   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,073   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,080   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,083   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,088   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,092   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,094   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,097   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,100   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,103   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,160   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:22,165   creating build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,166   copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,168   copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,172   copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,175   copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,187   copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,228   copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,233   copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,236   copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,244   copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,254   copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:22,258   creating build/lib/htmd/share/builder/caps
2026-05-13T13:39:22,259   copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps
2026-05-13T13:39:22,262   copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps
2026-05-13T13:39:22,264   copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps
2026-05-13T13:39:22,267   copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps
2026-05-13T13:39:22,269   copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps
2026-05-13T13:39:22,271   creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:22,272   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:22,274   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:22,277   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:22,280   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:22,283   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:22,285   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:22,287   creating build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,288   copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,290   copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,292   copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,294   copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,296   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,298   copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,300   copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,302   copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,304   copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,307   copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,309   copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,311   copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,313   copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,315   copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,317   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,319   copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,322   copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,324   copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,326   copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,328   copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,330   copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,333   copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,336   copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,338   copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,340   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,342   copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,344   copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,346   copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,348   copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,351   copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,352   copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,354   copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,356   copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,358   copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,361   copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,363   copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,365   copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,367   copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,369   copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,371   copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,373   copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,375   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,377   copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,379   copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,381   copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,383   copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,386   copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,388   copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:22,389   creating build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,390   copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,393   copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,395   copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,397   copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,400   copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,402   copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,404   copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,406   copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,408   copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,410   copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,412   copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,415   copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,418   copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,420   copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,422   copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,425   copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,428   copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,430   copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,432   copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,434   copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,436   copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,439   copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:22,441   creating build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,442   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,444   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,446   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,449   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,451   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,453   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,455   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,457   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,459   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,461   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,464   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,466   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,468   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,470   copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,471   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,473   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,475   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,477   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,479   copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,481   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,483   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,485   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,487   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,490   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,491   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,494   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,496   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,498   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,500   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,502   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,504   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,506   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,508   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,510   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,512   copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,514   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,516   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,518   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,520   copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,525   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,527   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,529   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,531   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,533   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,535   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,537   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,539   copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,541   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,543   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,546   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,548   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,550   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,552   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,554   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,557   copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,559   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,561   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,563   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,565   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,567   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,569   copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,571   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,573   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,576   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,578   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,580   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,582   copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,585   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,587   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,589   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,592   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,594   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,596   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,598   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,600   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,602   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,604   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,606   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,608   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,611   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,613   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,615   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,617   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,619   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,621   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,623   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,625   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,628   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,630   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,632   copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,635   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,637   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,639   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,641   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,643   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,645   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,647   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,649   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,651   copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,653   copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,655   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,657   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,659   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,661   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,663   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,665   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,667   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,669   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,671   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,674   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,676   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,678   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,680   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,682   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,684   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,686   copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,688   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,690   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,692   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,694   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,696   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,698   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,700   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,702   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,704   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,706   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,708   copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,710   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,713   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,715   copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,717   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,719   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:22,721   creating build/lib/htmd/share/solvate
2026-05-13T13:39:22,722   copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate
2026-05-13T13:39:22,766   creating build/lib/htmd/share/membranebuilder/lipids
2026-05-13T13:39:22,769   copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids
2026-05-13T13:39:22,771   creating build/lib/htmd/share/membranebuilder/lipids/popg
2026-05-13T13:39:22,772   copying htmd/share/membranebuilder/lipids/popg/popg.cif -> build/lib/htmd/share/membranebuilder/lipids/popg
2026-05-13T13:39:22,775   creating build/lib/htmd/share/membranebuilder/lipids/dmpa
2026-05-13T13:39:22,776   copying htmd/share/membranebuilder/lipids/dmpa/dmpa.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpa
2026-05-13T13:39:22,780   creating build/lib/htmd/share/membranebuilder/lipids/dmpe
2026-05-13T13:39:22,781   copying htmd/share/membranebuilder/lipids/dmpe/dmpe.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpe
2026-05-13T13:39:22,784   creating build/lib/htmd/share/membranebuilder/lipids/dapg
2026-05-13T13:39:22,785   copying htmd/share/membranebuilder/lipids/dapg/dapg.cif -> build/lib/htmd/share/membranebuilder/lipids/dapg
2026-05-13T13:39:22,788   creating build/lib/htmd/share/membranebuilder/lipids/dopc
2026-05-13T13:39:22,789   copying htmd/share/membranebuilder/lipids/dopc/dopc.cif -> build/lib/htmd/share/membranebuilder/lipids/dopc
2026-05-13T13:39:22,792   creating build/lib/htmd/share/membranebuilder/lipids/dape
2026-05-13T13:39:22,793   copying htmd/share/membranebuilder/lipids/dape/dape.cif -> build/lib/htmd/share/membranebuilder/lipids/dape
2026-05-13T13:39:22,797   creating build/lib/htmd/share/membranebuilder/lipids/popc
2026-05-13T13:39:22,798   copying htmd/share/membranebuilder/lipids/popc/popc.cif -> build/lib/htmd/share/membranebuilder/lipids/popc
2026-05-13T13:39:22,801   creating build/lib/htmd/share/membranebuilder/lipids/daps
2026-05-13T13:39:22,803   copying htmd/share/membranebuilder/lipids/daps/daps.cif -> build/lib/htmd/share/membranebuilder/lipids/daps
2026-05-13T13:39:22,806   creating build/lib/htmd/share/membranebuilder/lipids/dmpc
2026-05-13T13:39:22,807   copying htmd/share/membranebuilder/lipids/dmpc/dmpc.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpc
2026-05-13T13:39:22,810   creating build/lib/htmd/share/membranebuilder/lipids/sdpa
2026-05-13T13:39:22,812   copying htmd/share/membranebuilder/lipids/sdpa/sdpa.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpa
2026-05-13T13:39:22,815   creating build/lib/htmd/share/membranebuilder/lipids/dmpg
2026-05-13T13:39:22,816   copying htmd/share/membranebuilder/lipids/dmpg/dmpg.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpg
2026-05-13T13:39:22,819   creating build/lib/htmd/share/membranebuilder/lipids/sdpe
2026-05-13T13:39:22,820   copying htmd/share/membranebuilder/lipids/sdpe/sdpe.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpe
2026-05-13T13:39:22,824   creating build/lib/htmd/share/membranebuilder/lipids/pops
2026-05-13T13:39:22,825   copying htmd/share/membranebuilder/lipids/pops/pops.cif -> build/lib/htmd/share/membranebuilder/lipids/pops
2026-05-13T13:39:22,828   creating build/lib/htmd/share/membranebuilder/lipids/dope
2026-05-13T13:39:22,830   copying htmd/share/membranebuilder/lipids/dope/dope.cif -> build/lib/htmd/share/membranebuilder/lipids/dope
2026-05-13T13:39:22,833   creating build/lib/htmd/share/membranebuilder/lipids/pope
2026-05-13T13:39:22,834   copying htmd/share/membranebuilder/lipids/pope/pope.cif -> build/lib/htmd/share/membranebuilder/lipids/pope
2026-05-13T13:39:22,838   creating build/lib/htmd/share/membranebuilder/lipids/chl1
2026-05-13T13:39:22,839   copying htmd/share/membranebuilder/lipids/chl1/chl1.cif -> build/lib/htmd/share/membranebuilder/lipids/chl1
2026-05-13T13:39:22,842   creating build/lib/htmd/share/membranebuilder/lipids/dapc
2026-05-13T13:39:22,843   copying htmd/share/membranebuilder/lipids/dapc/dapc.cif -> build/lib/htmd/share/membranebuilder/lipids/dapc
2026-05-13T13:39:22,847   creating build/lib/htmd/share/membranebuilder/lipids/dpps
2026-05-13T13:39:22,848   copying htmd/share/membranebuilder/lipids/dpps/dpps.cif -> build/lib/htmd/share/membranebuilder/lipids/dpps
2026-05-13T13:39:22,852   creating build/lib/htmd/share/membranebuilder/lipids/dlps
2026-05-13T13:39:22,853   copying htmd/share/membranebuilder/lipids/dlps/dlps.cif -> build/lib/htmd/share/membranebuilder/lipids/dlps
2026-05-13T13:39:22,856   creating build/lib/htmd/share/membranebuilder/lipids/dlpa
2026-05-13T13:39:22,857   copying htmd/share/membranebuilder/lipids/dlpa/dlpa.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpa
2026-05-13T13:39:22,860   creating build/lib/htmd/share/membranebuilder/lipids/dmps
2026-05-13T13:39:22,861   copying htmd/share/membranebuilder/lipids/dmps/dmps.cif -> build/lib/htmd/share/membranebuilder/lipids/dmps
2026-05-13T13:39:22,865   creating build/lib/htmd/share/membranebuilder/lipids/dsps
2026-05-13T13:39:22,866   copying htmd/share/membranebuilder/lipids/dsps/dsps.cif -> build/lib/htmd/share/membranebuilder/lipids/dsps
2026-05-13T13:39:22,869   creating build/lib/htmd/share/membranebuilder/lipids/dspe
2026-05-13T13:39:22,870   copying htmd/share/membranebuilder/lipids/dspe/dspe.cif -> build/lib/htmd/share/membranebuilder/lipids/dspe
2026-05-13T13:39:22,873   creating build/lib/htmd/share/membranebuilder/lipids/sdps
2026-05-13T13:39:22,874   copying htmd/share/membranebuilder/lipids/sdps/sdps.cif -> build/lib/htmd/share/membranebuilder/lipids/sdps
2026-05-13T13:39:22,878   creating build/lib/htmd/share/membranebuilder/lipids/dopg
2026-05-13T13:39:22,879   copying htmd/share/membranebuilder/lipids/dopg/dopg.cif -> build/lib/htmd/share/membranebuilder/lipids/dopg
2026-05-13T13:39:22,882   creating build/lib/htmd/share/membranebuilder/lipids/dlpg
2026-05-13T13:39:22,883   copying htmd/share/membranebuilder/lipids/dlpg/dlpg.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpg
2026-05-13T13:39:22,886   creating build/lib/htmd/share/membranebuilder/lipids/dlpc
2026-05-13T13:39:22,888   copying htmd/share/membranebuilder/lipids/dlpc/dlpc.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpc
2026-05-13T13:39:22,891   creating build/lib/htmd/share/membranebuilder/lipids/dops
2026-05-13T13:39:22,892   copying htmd/share/membranebuilder/lipids/dops/dops.cif -> build/lib/htmd/share/membranebuilder/lipids/dops
2026-05-13T13:39:22,895   creating build/lib/htmd/share/membranebuilder/lipids/dppg
2026-05-13T13:39:22,896   copying htmd/share/membranebuilder/lipids/dppg/dppg.cif -> build/lib/htmd/share/membranebuilder/lipids/dppg
2026-05-13T13:39:22,900   creating build/lib/htmd/share/membranebuilder/lipids/dopa
2026-05-13T13:39:22,901   copying htmd/share/membranebuilder/lipids/dopa/dopa.cif -> build/lib/htmd/share/membranebuilder/lipids/dopa
2026-05-13T13:39:22,904   creating build/lib/htmd/share/membranebuilder/lipids/dlpe
2026-05-13T13:39:22,906   copying htmd/share/membranebuilder/lipids/dlpe/dlpe.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpe
2026-05-13T13:39:22,909   creating build/lib/htmd/share/membranebuilder/lipids/dppe
2026-05-13T13:39:22,910   copying htmd/share/membranebuilder/lipids/dppe/dppe.cif -> build/lib/htmd/share/membranebuilder/lipids/dppe
2026-05-13T13:39:22,914   creating build/lib/htmd/share/membranebuilder/lipids/dspg
2026-05-13T13:39:22,915   copying htmd/share/membranebuilder/lipids/dspg/dspg.cif -> build/lib/htmd/share/membranebuilder/lipids/dspg
2026-05-13T13:39:22,918   creating build/lib/htmd/share/membranebuilder/lipids/sdpc
2026-05-13T13:39:22,920   copying htmd/share/membranebuilder/lipids/sdpc/sdpc.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpc
2026-05-13T13:39:22,923   creating build/lib/htmd/share/membranebuilder/lipids/dspc
2026-05-13T13:39:22,924   copying htmd/share/membranebuilder/lipids/dspc/dspc.cif -> build/lib/htmd/share/membranebuilder/lipids/dspc
2026-05-13T13:39:22,928   creating build/lib/htmd/share/membranebuilder/lipids/dapa
2026-05-13T13:39:22,929   copying htmd/share/membranebuilder/lipids/dapa/dapa.cif -> build/lib/htmd/share/membranebuilder/lipids/dapa
2026-05-13T13:39:22,932   creating build/lib/htmd/share/membranebuilder/lipids/popa
2026-05-13T13:39:22,933   copying htmd/share/membranebuilder/lipids/popa/popa.cif -> build/lib/htmd/share/membranebuilder/lipids/popa
2026-05-13T13:39:22,936   creating build/lib/htmd/share/membranebuilder/lipids/dppa
2026-05-13T13:39:22,937   copying htmd/share/membranebuilder/lipids/dppa/dppa.cif -> build/lib/htmd/share/membranebuilder/lipids/dppa
2026-05-13T13:39:22,940   creating build/lib/htmd/share/membranebuilder/lipids/dppc
2026-05-13T13:39:22,941   copying htmd/share/membranebuilder/lipids/dppc/dppc.cif -> build/lib/htmd/share/membranebuilder/lipids/dppc
2026-05-13T13:39:22,943   creating build/lib/htmd/share/membranebuilder/lipids/sdpg
2026-05-13T13:39:22,944   copying htmd/share/membranebuilder/lipids/sdpg/sdpg.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpg
2026-05-13T13:39:22,947   creating build/lib/htmd/share/membranebuilder/lipids/dspa
2026-05-13T13:39:22,948   copying htmd/share/membranebuilder/lipids/dspa/dspa.cif -> build/lib/htmd/share/membranebuilder/lipids/dspa
2026-05-13T13:39:22,967   installing to build/bdist.linux-armv7l/wheel
2026-05-13T13:39:22,967   running install
2026-05-13T13:39:22,991   running install_lib
2026-05-13T13:39:22,999   creating build/bdist.linux-armv7l/wheel
2026-05-13T13:39:23,001   creating build/bdist.linux-armv7l/wheel/htmd
2026-05-13T13:39:23,002   creating build/bdist.linux-armv7l/wheel/htmd/clustering
2026-05-13T13:39:23,004   copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-05-13T13:39:23,005   copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-05-13T13:39:23,007   copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-05-13T13:39:23,010   copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:23,012   copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:23,014   copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:23,017   copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:23,019   creating build/bdist.linux-armv7l/wheel/htmd/adaptive
2026-05-13T13:39:23,020   copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-13T13:39:23,022   copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-13T13:39:23,025   copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-13T13:39:23,026   copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-13T13:39:23,029   copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-13T13:39:23,031   copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-13T13:39:23,033   copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-05-13T13:39:23,035   copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:23,037   copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:23,040   copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:23,042   creating build/bdist.linux-armv7l/wheel/htmd/share
2026-05-13T13:39:23,043   copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share
2026-05-13T13:39:23,052   creating build/bdist.linux-armv7l/wheel/htmd/share/builder
2026-05-13T13:39:23,053   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles
2026-05-13T13:39:23,055   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,056   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,059   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,064   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,066   copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,069   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,073   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,078   copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,081   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,084   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,088   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-05-13T13:39:23,104   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str
2026-05-13T13:39:23,106   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:23,107   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:23,109   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:23,111   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:23,113   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:23,115   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-05-13T13:39:23,118   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:23,119   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:23,121   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:23,128   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:23,154   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:23,158   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:23,164   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-05-13T13:39:23,183   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,184   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,187   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,190   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,205   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,208   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,232   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,235   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,268   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,275   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,281   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,286   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,317   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,324   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,327   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,333   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,335   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,338   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,346   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,368   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-05-13T13:39:23,386   copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str
2026-05-13T13:39:23,389   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:23,390   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:23,394   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:23,397   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:23,417   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:23,421   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-05-13T13:39:23,447   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd
2026-05-13T13:39:23,448   copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd
2026-05-13T13:39:23,451   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,452   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,455   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,458   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,462   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,464   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,467   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,471   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,474   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,476   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,479   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,482   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,510   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-05-13T13:39:23,515   copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-05-13T13:39:23,518   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,519   copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,521   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,524   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,527   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,540   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,649   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,652   copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,655   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,661   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,670   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-05-13T13:39:23,673   copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-05-13T13:39:23,675   copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-05-13T13:39:23,679   copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-05-13T13:39:23,681   copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-05-13T13:39:23,684   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps
2026-05-13T13:39:23,685   copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-13T13:39:23,687   copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-13T13:39:23,689   copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-13T13:39:23,691   copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-13T13:39:23,693   copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-05-13T13:39:23,695   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles
2026-05-13T13:39:23,697   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:23,698   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:23,700   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:23,702   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:23,705   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:23,708   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:23,709   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-05-13T13:39:23,712   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,713   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,715   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,717   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,719   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,720   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,722   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,724   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,726   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,728   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,729   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,731   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,733   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,734   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,736   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,738   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,740   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,742   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,743   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,745   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,748   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,750   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,752   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,755   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,756   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,758   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,760   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,762   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,763   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,765   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,767   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,768   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,770   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,772   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,774   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,775   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,777   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,779   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,781   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,783   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,785   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,786   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,789   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,790   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,792   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,794   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,796   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,798   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,799   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-05-13T13:39:23,802   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,803   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,805   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,807   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,809   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,811   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,813   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,814   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,816   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,818   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,820   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,822   copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,824   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,826   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,828   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,830   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,832   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,834   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,836   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,838   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,840   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,842   copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,844   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-05-13T13:39:23,848   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,849   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,851   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,853   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,855   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,856   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,858   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,860   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,861   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,863   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,865   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,866   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,868   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,870   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,871   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,873   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,875   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,877   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,878   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,880   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,882   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,884   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,885   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,887   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,889   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,891   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,893   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,895   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,896   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,898   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,900   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,902   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,903   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,905   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,906   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,908   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,910   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,911   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,913   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,915   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,919   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,921   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,922   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,924   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,926   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,927   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,929   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,931   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,933   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,935   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,937   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,938   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,940   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,942   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,944   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,945   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,947   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,949   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,951   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,952   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,954   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,956   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,958   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,959   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,961   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,963   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,965   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,966   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,968   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,970   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,972   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,974   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,975   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,977   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,979   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,981   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,983   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,984   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,986   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,988   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,990   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,991   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,993   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,995   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,996   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,998   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:23,999   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,001   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,003   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,005   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,006   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,008   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,010   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,011   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,013   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,015   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,016   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,019   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,021   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,022   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,024   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,026   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,028   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,030   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,031   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,033   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,035   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,036   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,038   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,040   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,042   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,043   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,045   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,047   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,048   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,050   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,052   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,054   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,056   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,058   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,059   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,061   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,063   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,065   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,066   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,068   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,070   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,072   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,074   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,075   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,077   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,079   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,080   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-05-13T13:39:24,082   creating build/bdist.linux-armv7l/wheel/htmd/share/solvate
2026-05-13T13:39:24,083   copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate
2026-05-13T13:39:24,125   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder
2026-05-13T13:39:24,127   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids
2026-05-13T13:39:24,129   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popg
2026-05-13T13:39:24,130   copying build/lib/htmd/share/membranebuilder/lipids/popg/popg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popg
2026-05-13T13:39:24,133   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpa
2026-05-13T13:39:24,134   copying build/lib/htmd/share/membranebuilder/lipids/dmpa/dmpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpa
2026-05-13T13:39:24,137   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpe
2026-05-13T13:39:24,138   copying build/lib/htmd/share/membranebuilder/lipids/dmpe/dmpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpe
2026-05-13T13:39:24,141   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapg
2026-05-13T13:39:24,142   copying build/lib/htmd/share/membranebuilder/lipids/dapg/dapg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapg
2026-05-13T13:39:24,145   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopc
2026-05-13T13:39:24,146   copying build/lib/htmd/share/membranebuilder/lipids/dopc/dopc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopc
2026-05-13T13:39:24,149   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dape
2026-05-13T13:39:24,150   copying build/lib/htmd/share/membranebuilder/lipids/dape/dape.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dape
2026-05-13T13:39:24,153   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc
2026-05-13T13:39:24,154   copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc
2026-05-13T13:39:24,157   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/daps
2026-05-13T13:39:24,158   copying build/lib/htmd/share/membranebuilder/lipids/daps/daps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/daps
2026-05-13T13:39:24,162   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpc
2026-05-13T13:39:24,163   copying build/lib/htmd/share/membranebuilder/lipids/dmpc/dmpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpc
2026-05-13T13:39:24,166   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpa
2026-05-13T13:39:24,167   copying build/lib/htmd/share/membranebuilder/lipids/sdpa/sdpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpa
2026-05-13T13:39:24,170   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpg
2026-05-13T13:39:24,171   copying build/lib/htmd/share/membranebuilder/lipids/dmpg/dmpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpg
2026-05-13T13:39:24,174   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpe
2026-05-13T13:39:24,175   copying build/lib/htmd/share/membranebuilder/lipids/sdpe/sdpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpe
2026-05-13T13:39:24,178   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pops
2026-05-13T13:39:24,179   copying build/lib/htmd/share/membranebuilder/lipids/pops/pops.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pops
2026-05-13T13:39:24,182   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dope
2026-05-13T13:39:24,183   copying build/lib/htmd/share/membranebuilder/lipids/dope/dope.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dope
2026-05-13T13:39:24,186   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope
2026-05-13T13:39:24,187   copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope
2026-05-13T13:39:24,190   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1
2026-05-13T13:39:24,191   copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1
2026-05-13T13:39:24,194   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapc
2026-05-13T13:39:24,195   copying build/lib/htmd/share/membranebuilder/lipids/dapc/dapc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapc
2026-05-13T13:39:24,198   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dpps
2026-05-13T13:39:24,199   copying build/lib/htmd/share/membranebuilder/lipids/dpps/dpps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dpps
2026-05-13T13:39:24,202   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlps
2026-05-13T13:39:24,204   copying build/lib/htmd/share/membranebuilder/lipids/dlps/dlps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlps
2026-05-13T13:39:24,206   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpa
2026-05-13T13:39:24,208   copying build/lib/htmd/share/membranebuilder/lipids/dlpa/dlpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpa
2026-05-13T13:39:24,211   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmps
2026-05-13T13:39:24,212   copying build/lib/htmd/share/membranebuilder/lipids/dmps/dmps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmps
2026-05-13T13:39:24,215   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dsps
2026-05-13T13:39:24,216   copying build/lib/htmd/share/membranebuilder/lipids/dsps/dsps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dsps
2026-05-13T13:39:24,219   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspe
2026-05-13T13:39:24,220   copying build/lib/htmd/share/membranebuilder/lipids/dspe/dspe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspe
2026-05-13T13:39:24,223   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdps
2026-05-13T13:39:24,224   copying build/lib/htmd/share/membranebuilder/lipids/sdps/sdps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdps
2026-05-13T13:39:24,228   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopg
2026-05-13T13:39:24,229   copying build/lib/htmd/share/membranebuilder/lipids/dopg/dopg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopg
2026-05-13T13:39:24,232   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpg
2026-05-13T13:39:24,233   copying build/lib/htmd/share/membranebuilder/lipids/dlpg/dlpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpg
2026-05-13T13:39:24,236   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpc
2026-05-13T13:39:24,237   copying build/lib/htmd/share/membranebuilder/lipids/dlpc/dlpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpc
2026-05-13T13:39:24,240   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dops
2026-05-13T13:39:24,241   copying build/lib/htmd/share/membranebuilder/lipids/dops/dops.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dops
2026-05-13T13:39:24,244   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppg
2026-05-13T13:39:24,245   copying build/lib/htmd/share/membranebuilder/lipids/dppg/dppg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppg
2026-05-13T13:39:24,248   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopa
2026-05-13T13:39:24,249   copying build/lib/htmd/share/membranebuilder/lipids/dopa/dopa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopa
2026-05-13T13:39:24,252   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpe
2026-05-13T13:39:24,253   copying build/lib/htmd/share/membranebuilder/lipids/dlpe/dlpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpe
2026-05-13T13:39:24,256   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppe
2026-05-13T13:39:24,257   copying build/lib/htmd/share/membranebuilder/lipids/dppe/dppe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppe
2026-05-13T13:39:24,260   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspg
2026-05-13T13:39:24,261   copying build/lib/htmd/share/membranebuilder/lipids/dspg/dspg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspg
2026-05-13T13:39:24,264   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpc
2026-05-13T13:39:24,265   copying build/lib/htmd/share/membranebuilder/lipids/sdpc/sdpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpc
2026-05-13T13:39:24,268   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspc
2026-05-13T13:39:24,270   copying build/lib/htmd/share/membranebuilder/lipids/dspc/dspc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspc
2026-05-13T13:39:24,273   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapa
2026-05-13T13:39:24,274   copying build/lib/htmd/share/membranebuilder/lipids/dapa/dapa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapa
2026-05-13T13:39:24,277   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popa
2026-05-13T13:39:24,278   copying build/lib/htmd/share/membranebuilder/lipids/popa/popa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popa
2026-05-13T13:39:24,281   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppa
2026-05-13T13:39:24,282   copying build/lib/htmd/share/membranebuilder/lipids/dppa/dppa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppa
2026-05-13T13:39:24,285   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppc
2026-05-13T13:39:24,286   copying build/lib/htmd/share/membranebuilder/lipids/dppc/dppc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppc
2026-05-13T13:39:24,289   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpg
2026-05-13T13:39:24,291   copying build/lib/htmd/share/membranebuilder/lipids/sdpg/sdpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpg
2026-05-13T13:39:24,294   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspa
2026-05-13T13:39:24,295   copying build/lib/htmd/share/membranebuilder/lipids/dspa/dspa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspa
2026-05-13T13:39:24,297   copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids
2026-05-13T13:39:24,300   creating build/bdist.linux-armv7l/wheel/htmd/projections
2026-05-13T13:39:24,301   copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-13T13:39:24,302   copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-13T13:39:24,304   copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-13T13:39:24,306   copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-13T13:39:24,308   copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-05-13T13:39:24,311   copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,313   copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,316   copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,318   copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,321   creating build/bdist.linux-armv7l/wheel/htmd/builder
2026-05-13T13:39:24,322   copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-13T13:39:24,324   copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-13T13:39:24,326   copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-13T13:39:24,329   copying build/lib/htmd/builder/nonstandard.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-13T13:39:24,332   copying build/lib/htmd/builder/noncanonical.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-13T13:39:24,335   copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-13T13:39:24,337   copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-13T13:39:24,340   copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-13T13:39:24,343   copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-05-13T13:39:24,345   copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,347   copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,350   copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,352   copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,355   copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,357   copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,363   creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2026-05-13T13:39:24,365   copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-13T13:39:24,368   copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-13T13:39:24,371   copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-13T13:39:24,374   copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-13T13:39:24,377   copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-05-13T13:39:24,379   copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,382   copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,384   copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-05-13T13:39:24,387   running install_egg_info
2026-05-13T13:39:24,405   running egg_info
2026-05-13T13:39:24,414   writing acellera_htmd.egg-info/PKG-INFO
2026-05-13T13:39:24,420   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-05-13T13:39:24,421   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-05-13T13:39:24,426   writing requirements to acellera_htmd.egg-info/requires.txt
2026-05-13T13:39:24,427   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-05-13T13:39:24,515   /tmp/pip-build-env-6yiwolow/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-13T13:39:24,515     return get_active_overrides().subprocess_timeout
2026-05-13T13:39:24,521   listing git files failed - pretending there aren't any
2026-05-13T13:39:24,526   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-13T13:39:24,547   reading manifest template 'MANIFEST.in'
2026-05-13T13:39:24,574   no previously-included directories found matching 'htmd/data'
2026-05-13T13:39:24,576   no previously-included directories found matching '.github'
2026-05-13T13:39:24,578   no previously-included directories found matching 'doc'
2026-05-13T13:39:24,582   no previously-included directories found matching 'package'
2026-05-13T13:39:24,582   no previously-included directories found matching 'tests'
2026-05-13T13:39:24,583   no previously-included directories found matching 'tutorials'
2026-05-13T13:39:24,584   warning: no previously-included files found matching 'Makefile'
2026-05-13T13:39:24,584   adding license file 'LICENSE'
2026-05-13T13:39:24,608   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-05-13T13:39:24,610   Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.7.2-py3.11.egg-info
2026-05-13T13:39:24,622   running install_scripts
2026-05-13T13:39:24,633   creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.7.2.dist-info/WHEEL
2026-05-13T13:39:24,636   creating '/tmp/pip-wheel-pfo42q0y/.tmp-ef4aqr3e/acellera_htmd-2.7.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-05-13T13:39:24,639   adding 'acellera_htmd-2.7.2.dist-info/licenses/LICENSE'
2026-05-13T13:39:24,641   adding 'htmd/__init__.py'
2026-05-13T13:39:24,643   adding 'htmd/config.py'
2026-05-13T13:39:24,644   adding 'htmd/decorators.py'
2026-05-13T13:39:24,646   adding 'htmd/dock.py'
2026-05-13T13:39:24,648   adding 'htmd/home.py'
2026-05-13T13:39:24,651   adding 'htmd/kinetics.py'
2026-05-13T13:39:24,652   adding 'htmd/latest.py'
2026-05-13T13:39:24,654   adding 'htmd/license.py'
2026-05-13T13:39:24,660   adding 'htmd/metricdata.py'
2026-05-13T13:39:24,663   adding 'htmd/metricdatagenerator.py'
2026-05-13T13:39:24,671   adding 'htmd/model.py'
2026-05-13T13:39:24,674   adding 'htmd/mutualinformation.py'
2026-05-13T13:39:24,675   adding 'htmd/parallelprogress.py'
2026-05-13T13:39:24,677   adding 'htmd/pathplanning.py'
2026-05-13T13:39:24,679   adding 'htmd/session.py'
2026-05-13T13:39:24,681   adding 'htmd/simlist.py'
2026-05-13T13:39:24,683   adding 'htmd/ui.py'
2026-05-13T13:39:24,684   adding 'htmd/units.py'
2026-05-13T13:39:24,686   adding 'htmd/util.py'
2026-05-13T13:39:24,687   adding 'htmd/versionwarnings.py'
2026-05-13T13:39:24,689   adding 'htmd/adaptive/__init__.py'
2026-05-13T13:39:24,692   adding 'htmd/adaptive/adaptive.py'
2026-05-13T13:39:24,695   adding 'htmd/adaptive/adaptivebandit.py'
2026-05-13T13:39:24,698   adding 'htmd/adaptive/adaptivegoal.py'
2026-05-13T13:39:24,700   adding 'htmd/adaptive/adaptivegoaleg.py'
2026-05-13T13:39:24,703   adding 'htmd/adaptive/adaptiverun.py'
2026-05-13T13:39:24,704   adding 'htmd/adaptive/util.py'
2026-05-13T13:39:24,706   adding 'htmd/builder/__init__.py'
2026-05-13T13:39:24,714   adding 'htmd/builder/amber.py'
2026-05-13T13:39:24,717   adding 'htmd/builder/builder.py'
2026-05-13T13:39:24,721   adding 'htmd/builder/charmm.py'
2026-05-13T13:39:24,723   adding 'htmd/builder/ionize.py'
2026-05-13T13:39:24,724   adding 'htmd/builder/loopmodeler.py'
2026-05-13T13:39:24,727   adding 'htmd/builder/noncanonical.py'
2026-05-13T13:39:24,737   adding 'htmd/builder/nonstandard.py'
2026-05-13T13:39:24,739   adding 'htmd/builder/solvate.py'
2026-05-13T13:39:24,741   adding 'htmd/clustering/__init__.py'
2026-05-13T13:39:24,742   adding 'htmd/clustering/kcenters.py'
2026-05-13T13:39:24,744   adding 'htmd/clustering/regular.py'
2026-05-13T13:39:24,745   adding 'htmd/membranebuilder/__init__.py'
2026-05-13T13:39:24,750   adding 'htmd/membranebuilder/build_membrane.py'
2026-05-13T13:39:24,751   adding 'htmd/membranebuilder/globalminimization.py'
2026-05-13T13:39:24,753   adding 'htmd/membranebuilder/ljfluid.py'
2026-05-13T13:39:24,755   adding 'htmd/membranebuilder/ringpenetration.py'
2026-05-13T13:39:24,756   adding 'htmd/projections/__init__.py'
2026-05-13T13:39:24,758   adding 'htmd/projections/gwpca.py'
2026-05-13T13:39:24,759   adding 'htmd/projections/kmeanstri.py'
2026-05-13T13:39:24,761   adding 'htmd/projections/metric.py'
2026-05-13T13:39:24,763   adding 'htmd/projections/tica.py'
2026-05-13T13:39:24,820   adding 'htmd/share/license-checker'
2026-05-13T13:39:24,851   adding 'htmd/share/builder/charmmlipid2amber.csv'
2026-05-13T13:39:24,854   adding 'htmd/share/builder/triala_capped.cif'
2026-05-13T13:39:24,856   adding 'htmd/share/builder/triala_capped.mmtf'
2026-05-13T13:39:24,858   adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod'
2026-05-13T13:39:24,860   adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi'
2026-05-13T13:39:24,861   adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod'
2026-05-13T13:39:24,863   adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi'
2026-05-13T13:39:24,864   adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod'
2026-05-13T13:39:24,866   adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi'
2026-05-13T13:39:24,867   adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod'
2026-05-13T13:39:24,868   adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi'
2026-05-13T13:39:24,870   adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod'
2026-05-13T13:39:24,871   adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi'
2026-05-13T13:39:24,873   adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod'
2026-05-13T13:39:24,874   adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi'
2026-05-13T13:39:24,876   adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod'
2026-05-13T13:39:24,877   adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi'
2026-05-13T13:39:24,879   adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod'
2026-05-13T13:39:24,881   adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi'
2026-05-13T13:39:24,882   adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod'
2026-05-13T13:39:24,884   adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi'
2026-05-13T13:39:24,885   adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod'
2026-05-13T13:39:24,887   adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi'
2026-05-13T13:39:24,889   adding 'htmd/share/builder/amberfiles/cofactors/README.txt'
2026-05-13T13:39:24,897   adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in'
2026-05-13T13:39:24,901   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod'
2026-05-13T13:39:24,903   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi'
2026-05-13T13:39:24,904   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod'
2026-05-13T13:39:24,905   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi'
2026-05-13T13:39:24,906   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod'
2026-05-13T13:39:24,908   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi'
2026-05-13T13:39:24,909   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod'
2026-05-13T13:39:24,910   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi'
2026-05-13T13:39:24,911   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod'
2026-05-13T13:39:24,913   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi'
2026-05-13T13:39:24,914   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod'
2026-05-13T13:39:24,915   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi'
2026-05-13T13:39:24,916   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod'
2026-05-13T13:39:24,917   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi'
2026-05-13T13:39:24,918   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod'
2026-05-13T13:39:24,920   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi'
2026-05-13T13:39:24,921   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod'
2026-05-13T13:39:24,922   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi'
2026-05-13T13:39:24,923   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod'
2026-05-13T13:39:24,925   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi'
2026-05-13T13:39:24,926   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod'
2026-05-13T13:39:24,927   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi'
2026-05-13T13:39:24,928   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod'
2026-05-13T13:39:24,929   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi'
2026-05-13T13:39:24,930   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod'
2026-05-13T13:39:24,932   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi'
2026-05-13T13:39:24,933   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod'
2026-05-13T13:39:24,934   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi'
2026-05-13T13:39:24,935   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod'
2026-05-13T13:39:24,937   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi'
2026-05-13T13:39:24,938   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod'
2026-05-13T13:39:24,940   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi'
2026-05-13T13:39:24,941   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod'
2026-05-13T13:39:24,942   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi'
2026-05-13T13:39:24,944   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod'
2026-05-13T13:39:24,946   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi'
2026-05-13T13:39:24,947   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod'
2026-05-13T13:39:24,949   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi'
2026-05-13T13:39:24,950   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod'
2026-05-13T13:39:24,951   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi'
2026-05-13T13:39:24,952   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod'
2026-05-13T13:39:24,954   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi'
2026-05-13T13:39:24,955   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod'
2026-05-13T13:39:24,956   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi'
2026-05-13T13:39:24,960   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod'
2026-05-13T13:39:24,961   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi'
2026-05-13T13:39:24,962   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod'
2026-05-13T13:39:24,964   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi'
2026-05-13T13:39:24,965   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod'
2026-05-13T13:39:24,966   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi'
2026-05-13T13:39:24,967   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod'
2026-05-13T13:39:24,969   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi'
2026-05-13T13:39:24,970   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod'
2026-05-13T13:39:24,971   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi'
2026-05-13T13:39:24,972   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod'
2026-05-13T13:39:24,974   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi'
2026-05-13T13:39:24,975   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod'
2026-05-13T13:39:24,976   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi'
2026-05-13T13:39:24,977   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod'
2026-05-13T13:39:24,979   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi'
2026-05-13T13:39:24,980   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod'
2026-05-13T13:39:24,981   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi'
2026-05-13T13:39:24,982   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod'
2026-05-13T13:39:24,984   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi'
2026-05-13T13:39:24,985   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod'
2026-05-13T13:39:24,987   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi'
2026-05-13T13:39:24,989   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod'
2026-05-13T13:39:24,990   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi'
2026-05-13T13:39:24,992   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod'
2026-05-13T13:39:24,993   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi'
2026-05-13T13:39:24,994   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod'
2026-05-13T13:39:24,996   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi'
2026-05-13T13:39:24,997   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod'
2026-05-13T13:39:24,998   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi'
2026-05-13T13:39:24,999   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod'
2026-05-13T13:39:25,001   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi'
2026-05-13T13:39:25,002   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod'
2026-05-13T13:39:25,003   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi'
2026-05-13T13:39:25,004   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod'
2026-05-13T13:39:25,006   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi'
2026-05-13T13:39:25,007   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod'
2026-05-13T13:39:25,009   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi'
2026-05-13T13:39:25,010   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod'
2026-05-13T13:39:25,011   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi'
2026-05-13T13:39:25,012   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod'
2026-05-13T13:39:25,014   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi'
2026-05-13T13:39:25,015   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod'
2026-05-13T13:39:25,016   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi'
2026-05-13T13:39:25,017   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod'
2026-05-13T13:39:25,019   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi'
2026-05-13T13:39:25,020   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod'
2026-05-13T13:39:25,022   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi'
2026-05-13T13:39:25,023   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod'
2026-05-13T13:39:25,024   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi'
2026-05-13T13:39:25,026   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod'
2026-05-13T13:39:25,028   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi'
2026-05-13T13:39:25,029   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod'
2026-05-13T13:39:25,031   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi'
2026-05-13T13:39:25,032   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod'
2026-05-13T13:39:25,034   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi'
2026-05-13T13:39:25,035   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod'
2026-05-13T13:39:25,037   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi'
2026-05-13T13:39:25,038   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod'
2026-05-13T13:39:25,039   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi'
2026-05-13T13:39:25,040   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod'
2026-05-13T13:39:25,042   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi'
2026-05-13T13:39:25,043   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod'
2026-05-13T13:39:25,044   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi'
2026-05-13T13:39:25,045   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod'
2026-05-13T13:39:25,047   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi'
2026-05-13T13:39:25,048   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod'
2026-05-13T13:39:25,049   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi'
2026-05-13T13:39:25,050   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod'
2026-05-13T13:39:25,052   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi'
2026-05-13T13:39:25,053   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod'
2026-05-13T13:39:25,054   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi'
2026-05-13T13:39:25,056   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod'
2026-05-13T13:39:25,057   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi'
2026-05-13T13:39:25,058   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod'
2026-05-13T13:39:25,060   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi'
2026-05-13T13:39:25,061   adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt'
2026-05-13T13:39:25,062   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod'
2026-05-13T13:39:25,064   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi'
2026-05-13T13:39:25,065   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod'
2026-05-13T13:39:25,066   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi'
2026-05-13T13:39:25,068   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod'
2026-05-13T13:39:25,069   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi'
2026-05-13T13:39:25,070   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod'
2026-05-13T13:39:25,072   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi'
2026-05-13T13:39:25,073   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod'
2026-05-13T13:39:25,075   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi'
2026-05-13T13:39:25,096   adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in'
2026-05-13T13:39:25,099   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt'
2026-05-13T13:39:25,101   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod'
2026-05-13T13:39:25,106   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib'
2026-05-13T13:39:25,107   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in'
2026-05-13T13:39:25,109   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log'
2026-05-13T13:39:25,110   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15'
2026-05-13T13:39:25,113   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod'
2026-05-13T13:39:25,114   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi'
2026-05-13T13:39:25,115   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod'
2026-05-13T13:39:25,117   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi'
2026-05-13T13:39:25,118   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod'
2026-05-13T13:39:25,119   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi'
2026-05-13T13:39:25,121   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod'
2026-05-13T13:39:25,122   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi'
2026-05-13T13:39:25,123   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod'
2026-05-13T13:39:25,125   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi'
2026-05-13T13:39:25,126   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod'
2026-05-13T13:39:25,127   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi'
2026-05-13T13:39:25,128   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod'
2026-05-13T13:39:25,130   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi'
2026-05-13T13:39:25,131   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod'
2026-05-13T13:39:25,132   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi'
2026-05-13T13:39:25,134   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod'
2026-05-13T13:39:25,135   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi'
2026-05-13T13:39:25,136   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod'
2026-05-13T13:39:25,138   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi'
2026-05-13T13:39:25,139   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod'
2026-05-13T13:39:25,140   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi'
2026-05-13T13:39:25,142   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod'
2026-05-13T13:39:25,143   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi'
2026-05-13T13:39:25,144   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod'
2026-05-13T13:39:25,145   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi'
2026-05-13T13:39:25,146   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod'
2026-05-13T13:39:25,148   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi'
2026-05-13T13:39:25,149   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod'
2026-05-13T13:39:25,151   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi'
2026-05-13T13:39:25,152   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod'
2026-05-13T13:39:25,153   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi'
2026-05-13T13:39:25,154   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod'
2026-05-13T13:39:25,155   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi'
2026-05-13T13:39:25,156   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod'
2026-05-13T13:39:25,158   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi'
2026-05-13T13:39:25,159   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod'
2026-05-13T13:39:25,161   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi'
2026-05-13T13:39:25,162   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod'
2026-05-13T13:39:25,163   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi'
2026-05-13T13:39:25,164   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod'
2026-05-13T13:39:25,166   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi'
2026-05-13T13:39:25,167   adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt'
2026-05-13T13:39:25,168   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod'
2026-05-13T13:39:25,170   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi'
2026-05-13T13:39:25,171   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod'
2026-05-13T13:39:25,172   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi'
2026-05-13T13:39:25,180   adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in'
2026-05-13T13:39:25,182   adding 'htmd/share/builder/caps/ACE.cif'
2026-05-13T13:39:25,184   adding 'htmd/share/builder/caps/ACE.pdb'
2026-05-13T13:39:25,185   adding 'htmd/share/builder/caps/NHE.pdb'
2026-05-13T13:39:25,186   adding 'htmd/share/builder/caps/NME.cif'
2026-05-13T13:39:25,187   adding 'htmd/share/builder/caps/NME.pdb'
2026-05-13T13:39:25,189   adding 'htmd/share/builder/charmmfiles/Makefile'
2026-05-13T13:39:25,190   adding 'htmd/share/builder/charmmfiles/README.md'
2026-05-13T13:39:25,204   adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm'
2026-05-13T13:39:25,218   adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm'
2026-05-13T13:39:25,222   adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm'
2026-05-13T13:39:25,237   adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm'
2026-05-13T13:39:25,324   adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm'
2026-05-13T13:39:25,334   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm'
2026-05-13T13:39:25,337   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm'
2026-05-13T13:39:25,345   adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm'
2026-05-13T13:39:25,361   adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm'
2026-05-13T13:39:25,364   adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm'
2026-05-13T13:39:25,366   adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str'
2026-05-13T13:39:25,443   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str'
2026-05-13T13:39:25,452   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str'
2026-05-13T13:39:25,582   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str'
2026-05-13T13:39:25,611   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str'
2026-05-13T13:39:25,624   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str'
2026-05-13T13:39:25,627   adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str'
2026-05-13T13:39:25,664   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str'
2026-05-13T13:39:25,698   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str'
2026-05-13T13:39:25,804   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str'
2026-05-13T13:39:25,810   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str'
2026-05-13T13:39:25,824   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str'
2026-05-13T13:39:25,831   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str'
2026-05-13T13:39:25,923   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str'
2026-05-13T13:39:25,948   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str'
2026-05-13T13:39:25,968   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str'
2026-05-13T13:39:26,059   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str'
2026-05-13T13:39:26,071   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str'
2026-05-13T13:39:26,331   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str'
2026-05-13T13:39:26,448   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str'
2026-05-13T13:39:26,511   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str'
2026-05-13T13:39:26,527   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str'
2026-05-13T13:39:26,535   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str'
2026-05-13T13:39:26,552   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str'
2026-05-13T13:39:26,562   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str'
2026-05-13T13:39:26,570   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str'
2026-05-13T13:39:26,573   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str'
2026-05-13T13:39:26,574   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str'
2026-05-13T13:39:26,575   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str'
2026-05-13T13:39:26,577   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str'
2026-05-13T13:39:26,579   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str'
2026-05-13T13:39:26,592   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str'
2026-05-13T13:39:26,618   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str'
2026-05-13T13:39:26,638   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str'
2026-05-13T13:39:26,644   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str'
2026-05-13T13:39:26,773   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str'
2026-05-13T13:39:26,909   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str'
2026-05-13T13:39:26,919   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str'
2026-05-13T13:39:26,921   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str'
2026-05-13T13:39:26,934   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str'
2026-05-13T13:39:26,958   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str'
2026-05-13T13:39:26,961   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str'
2026-05-13T13:39:26,964   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str'
2026-05-13T13:39:26,967   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str'
2026-05-13T13:39:26,977   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str'
2026-05-13T13:39:27,176   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str'
2026-05-13T13:39:27,197   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str'
2026-05-13T13:39:27,201   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str'
2026-05-13T13:39:27,210   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str'
2026-05-13T13:39:27,219   adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf'
2026-05-13T13:39:27,228   adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf'
2026-05-13T13:39:27,235   adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf'
2026-05-13T13:39:27,260   adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf'
2026-05-13T13:39:27,564   adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf'
2026-05-13T13:39:27,641   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf'
2026-05-13T13:39:27,691   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf'
2026-05-13T13:39:27,698   adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf'
2026-05-13T13:39:27,707   adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf'
2026-05-13T13:39:27,709   adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf'
2026-05-13T13:39:27,712   adding 'htmd/share/membranebuilder/lipids/lipiddb.csv'
2026-05-13T13:39:27,714   adding 'htmd/share/membranebuilder/lipids/chl1/chl1.cif'
2026-05-13T13:39:27,717   adding 'htmd/share/membranebuilder/lipids/dapa/dapa.cif'
2026-05-13T13:39:27,720   adding 'htmd/share/membranebuilder/lipids/dapc/dapc.cif'
2026-05-13T13:39:27,723   adding 'htmd/share/membranebuilder/lipids/dape/dape.cif'
2026-05-13T13:39:27,725   adding 'htmd/share/membranebuilder/lipids/dapg/dapg.cif'
2026-05-13T13:39:27,728   adding 'htmd/share/membranebuilder/lipids/daps/daps.cif'
2026-05-13T13:39:27,731   adding 'htmd/share/membranebuilder/lipids/dlpa/dlpa.cif'
2026-05-13T13:39:27,733   adding 'htmd/share/membranebuilder/lipids/dlpc/dlpc.cif'
2026-05-13T13:39:27,736   adding 'htmd/share/membranebuilder/lipids/dlpe/dlpe.cif'
2026-05-13T13:39:27,738   adding 'htmd/share/membranebuilder/lipids/dlpg/dlpg.cif'
2026-05-13T13:39:27,741   adding 'htmd/share/membranebuilder/lipids/dlps/dlps.cif'
2026-05-13T13:39:27,743   adding 'htmd/share/membranebuilder/lipids/dmpa/dmpa.cif'
2026-05-13T13:39:27,746   adding 'htmd/share/membranebuilder/lipids/dmpc/dmpc.cif'
2026-05-13T13:39:27,749   adding 'htmd/share/membranebuilder/lipids/dmpe/dmpe.cif'
2026-05-13T13:39:27,751   adding 'htmd/share/membranebuilder/lipids/dmpg/dmpg.cif'
2026-05-13T13:39:27,754   adding 'htmd/share/membranebuilder/lipids/dmps/dmps.cif'
2026-05-13T13:39:27,757   adding 'htmd/share/membranebuilder/lipids/dopa/dopa.cif'
2026-05-13T13:39:27,760   adding 'htmd/share/membranebuilder/lipids/dopc/dopc.cif'
2026-05-13T13:39:27,762   adding 'htmd/share/membranebuilder/lipids/dope/dope.cif'
2026-05-13T13:39:27,765   adding 'htmd/share/membranebuilder/lipids/dopg/dopg.cif'
2026-05-13T13:39:27,768   adding 'htmd/share/membranebuilder/lipids/dops/dops.cif'
2026-05-13T13:39:27,771   adding 'htmd/share/membranebuilder/lipids/dppa/dppa.cif'
2026-05-13T13:39:27,774   adding 'htmd/share/membranebuilder/lipids/dppc/dppc.cif'
2026-05-13T13:39:27,776   adding 'htmd/share/membranebuilder/lipids/dppe/dppe.cif'
2026-05-13T13:39:27,779   adding 'htmd/share/membranebuilder/lipids/dppg/dppg.cif'
2026-05-13T13:39:27,782   adding 'htmd/share/membranebuilder/lipids/dpps/dpps.cif'
2026-05-13T13:39:27,784   adding 'htmd/share/membranebuilder/lipids/dspa/dspa.cif'
2026-05-13T13:39:27,787   adding 'htmd/share/membranebuilder/lipids/dspc/dspc.cif'
2026-05-13T13:39:27,790   adding 'htmd/share/membranebuilder/lipids/dspe/dspe.cif'
2026-05-13T13:39:27,793   adding 'htmd/share/membranebuilder/lipids/dspg/dspg.cif'
2026-05-13T13:39:27,796   adding 'htmd/share/membranebuilder/lipids/dsps/dsps.cif'
2026-05-13T13:39:27,799   adding 'htmd/share/membranebuilder/lipids/popa/popa.cif'
2026-05-13T13:39:27,801   adding 'htmd/share/membranebuilder/lipids/popc/popc.cif'
2026-05-13T13:39:27,804   adding 'htmd/share/membranebuilder/lipids/pope/pope.cif'
2026-05-13T13:39:27,807   adding 'htmd/share/membranebuilder/lipids/popg/popg.cif'
2026-05-13T13:39:27,810   adding 'htmd/share/membranebuilder/lipids/pops/pops.cif'
2026-05-13T13:39:27,813   adding 'htmd/share/membranebuilder/lipids/sdpa/sdpa.cif'
2026-05-13T13:39:27,816   adding 'htmd/share/membranebuilder/lipids/sdpc/sdpc.cif'
2026-05-13T13:39:27,818   adding 'htmd/share/membranebuilder/lipids/sdpe/sdpe.cif'
2026-05-13T13:39:27,821   adding 'htmd/share/membranebuilder/lipids/sdpg/sdpg.cif'
2026-05-13T13:39:27,824   adding 'htmd/share/membranebuilder/lipids/sdps/sdps.cif'
2026-05-13T13:39:28,114   adding 'htmd/share/solvate/wat.pdb'
2026-05-13T13:39:28,128   adding 'acellera_htmd-2.7.2.dist-info/METADATA'
2026-05-13T13:39:28,129   adding 'acellera_htmd-2.7.2.dist-info/WHEEL'
2026-05-13T13:39:28,130   adding 'acellera_htmd-2.7.2.dist-info/entry_points.txt'
2026-05-13T13:39:28,131   adding 'acellera_htmd-2.7.2.dist-info/top_level.txt'
2026-05-13T13:39:28,137   adding 'acellera_htmd-2.7.2.dist-info/RECORD'
2026-05-13T13:39:28,186   removing build/bdist.linux-armv7l/wheel
2026-05-13T13:39:28,406   Building wheel for acellera-htmd (pyproject.toml): finished with status 'done'
2026-05-13T13:39:28,506   Created wheel for acellera-htmd: filename=acellera_htmd-2.7.2-py3-none-any.whl size=4399513 sha256=5981b32e776cdd1db68041329bccaef131a9671f57a10bdd0e66b908e06c64a6
2026-05-13T13:39:28,507   Stored in directory: /tmp/pip-ephem-wheel-cache-l2xqdqyo/wheels/67/89/4f/bacca652be3f2fafcb96d818f063f8b566c7c062b339dbebfe
2026-05-13T13:39:28,534 Successfully built acellera-htmd
2026-05-13T13:39:28,635 Removed build tracker: '/tmp/pip-build-tracker-swci6zar'