2026-05-13T17:19:48,551 Created temporary directory: /tmp/pip-ephem-wheel-cache-pqn0m0pu
2026-05-13T17:19:48,553 Created temporary directory: /tmp/pip-build-tracker-vbyujqq1
2026-05-13T17:19:48,553 Initialized build tracking at /tmp/pip-build-tracker-vbyujqq1
2026-05-13T17:19:48,554 Created build tracker: /tmp/pip-build-tracker-vbyujqq1
2026-05-13T17:19:48,554 Entered build tracker: /tmp/pip-build-tracker-vbyujqq1
2026-05-13T17:19:48,555 Created temporary directory: /tmp/pip-wheel-g4zo4xoy
2026-05-13T17:19:48,558 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-13T17:19:48,561 Created temporary directory: /tmp/pip-ephem-wheel-cache-nie4gsow
2026-05-13T17:19:48,583 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-13T17:19:48,586 2 location(s) to search for versions of skimgpt:
2026-05-13T17:19:48,586 * https://pypi.org/simple/skimgpt/
2026-05-13T17:19:48,586 * https://www.piwheels.org/simple/skimgpt/
2026-05-13T17:19:48,587 Fetching project page and analyzing links: https://pypi.org/simple/skimgpt/
2026-05-13T17:19:48,588 Getting page https://pypi.org/simple/skimgpt/
2026-05-13T17:19:48,589 Found index url https://pypi.org/simple
2026-05-13T17:19:48,815 Fetched page https://pypi.org/simple/skimgpt/ as application/vnd.pypi.simple.v1+json
2026-05-13T17:19:48,820   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/5b/e4/159fa6d31e797670c16a966f329e887553320fd41121ecbc37f1f42a927b/skimgpt-1.0.0-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:48,821   Found link https://files.pythonhosted.org/packages/4d/9e/f1e24804429e7da0e9280b116b97ba5810a130b52dd9ccecceadd6ccf55e/skimgpt-1.0.0.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.0
2026-05-13T17:19:48,821   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/7c/53/cc52c8549904b6c89d007f1068a31346c3e75f09cbbc90a8189e4f60f874/skimgpt-1.0.5-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:48,823   Found link https://files.pythonhosted.org/packages/38/40/2a659285343186f5bb160e4163f8f4e5b10687be47c4546ad4a8d3c6c16e/skimgpt-1.0.5.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.5
2026-05-13T17:19:48,823   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/ab/06/547b283132634bdd63656d313a025913d71ee5b1d612f3bfcc2d98331b99/skimgpt-1.0.6-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:48,824   Found link https://files.pythonhosted.org/packages/e4/49/56dc12f28a9a69bec4368adfa335368866c377cf787db7cff12019293df8/skimgpt-1.0.6.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.6
2026-05-13T17:19:48,825   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/36/a3/b40a6e16d6d7e25fcf2945fbc1c4d449933135d27a10f649b276f62ab304/skimgpt-1.1-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:48,826   Found link https://files.pythonhosted.org/packages/85/01/d401992a768ff3495f5e69595ef2fe1fd7f8c7dc5c3c433237cdafd0769e/skimgpt-1.1.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.1
2026-05-13T17:19:48,827   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/80/50/375197c9b2b61c37e2b8d8cd33499efdaaf60c1e0909dc5b8642ab27dfa8/skimgpt-1.2-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:48,827   Found link https://files.pythonhosted.org/packages/58/fb/fb5ef967d884a2fbf8328f2f83d016a56044c34950ab8b08e638fea90bec/skimgpt-1.2.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.2
2026-05-13T17:19:48,828   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/ce/3d/bcd1dfe57b3ee8c801068f70b93a0ec837f223c9ba58579fcf5e37f5f3e5/skimgpt-2.0.0-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:48,829   Found link https://files.pythonhosted.org/packages/42/85/156a9d7f9d57005e8bdee47a32d8a03e67c8945b2aa566f5fe69358a91b7/skimgpt-2.0.0.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.0
2026-05-13T17:19:48,830   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/65/51/2ba8c6987885f5fe0d82a0a1ab74c7fbd2dfb314b6cb3bb31925b08f1b8a/skimgpt-2.0.1-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:48,831   Found link https://files.pythonhosted.org/packages/ed/db/eacff4a9448c070b51b770a6c2f701fb1b2d837b0aea32ae7a08abe612f4/skimgpt-2.0.1.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.1
2026-05-13T17:19:48,831   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/1f/74/f03fc03f92872faaaae646a7a32cda4c689b4a898282ac67453e42b431d4/skimgpt-2.0.2-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:48,832   Found link https://files.pythonhosted.org/packages/ba/7a/a2a60fd5909477a7a2ea3f426c4fc018255de73507a1a00c5cf194dd5a70/skimgpt-2.0.2.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.2
2026-05-13T17:19:48,833   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/41/df/aa4d2bb2c2e59975ad7201c45e2ed0fd4b2a551ef9d26ef2a42712b8e6e3/skimgpt-2.0.3-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:48,834   Found link https://files.pythonhosted.org/packages/a7/64/d1b8e1d7ed026d6a18876525b616aa86575b8766ca6175b75b21793253a6/skimgpt-2.0.3.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.3
2026-05-13T17:19:48,834   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/5c/e4/fd7ed50d6b4aee928ab42f6e9ea4e8c8d7e39362ada86c59026b0057c5be/skimgpt-2.1-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:48,835   Found link https://files.pythonhosted.org/packages/41/06/f4bd1b81d7678d3fe7c66cb06b977a45e8b9be03354501ee99e3a9aa6b12/skimgpt-2.1.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.1
2026-05-13T17:19:48,836 Fetching project page and analyzing links: https://www.piwheels.org/simple/skimgpt/
2026-05-13T17:19:48,837 Getting page https://www.piwheels.org/simple/skimgpt/
2026-05-13T17:19:48,838 Found index url https://www.piwheels.org/simple
2026-05-13T17:19:49,146 Fetched page https://www.piwheels.org/simple/skimgpt/ as text/html
2026-05-13T17:19:49,150   Skipping link: No binaries permitted for skimgpt: https://www.piwheels.org/simple/skimgpt/skimgpt-2.1-py3-none-any.whl#sha256=95111b5d41f51f096d7581f210e2fcfab5b4956c22d52c6edc9342ddf4f886b8 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:49,151   Skipping link: No binaries permitted for skimgpt: https://www.piwheels.org/simple/skimgpt/skimgpt-2.0.2-py3-none-any.whl#sha256=7bd216923629bb130dcd874dd9f1defd17de020c45835f04ecf09fffb5707595 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:49,152   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-2.0.1-py3-none-any.whl#sha256=7facf52ed40df5f12628d4a87082df406a7a4d6d4547516d873870760e21790f (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:49,152   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-2.0.0-py3-none-any.whl#sha256=02e3c90f86cd6a5371cd622874f4f57fd3679d08cb1a2a1b5cf236552e9b003c (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:49,153   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.2-py3-none-any.whl#sha256=b4c4adbd30536892239d0d70fe47125b6e254968cae2cc74d10b71df90f3f55e (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:49,154   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.1-py3-none-any.whl#sha256=480c4ea401f7b080c2c4f06dbde341d6c4dba2629b04b574e64e4fe18979326b (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:49,154   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.6-py3-none-any.whl#sha256=a974ad27fdafa96f8e13df016211ba558c585668756dc22dc6bab39e6ad87f5c (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:49,155   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.5-py3-none-any.whl#sha256=4e4532d70e84030ef8e4886eadc21b1bec5f8478e56e5178ffe3e4b10d0e5872 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:49,155   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.0-py3-none-any.whl#sha256=4d72bc94b7b7efab9758f02986de73ee8e6624597343dba106c538245c978553 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-13T17:19:49,156 Skipping link: not a file: https://www.piwheels.org/simple/skimgpt/
2026-05-13T17:19:49,156 Skipping link: not a file: https://pypi.org/simple/skimgpt/
2026-05-13T17:19:49,176 Given no hashes to check 1 links for project 'skimgpt': discarding no candidates
2026-05-13T17:19:49,194 Collecting skimgpt==2.0.3
2026-05-13T17:19:49,197   Created temporary directory: /tmp/pip-unpack-w6qoboka
2026-05-13T17:19:49,426   Downloading skimgpt-2.0.3.tar.gz (234 kB)
2026-05-13T17:19:49,692   Added skimgpt==2.0.3 from https://files.pythonhosted.org/packages/a7/64/d1b8e1d7ed026d6a18876525b616aa86575b8766ca6175b75b21793253a6/skimgpt-2.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-vbyujqq1'
2026-05-13T17:19:49,701   Created temporary directory: /tmp/pip-build-env-tg3kevm5
2026-05-13T17:19:49,705   Installing build dependencies: started
2026-05-13T17:19:49,707   Running command pip subprocess to install build dependencies
2026-05-13T17:19:50,879   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-05-13T17:19:51,517   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-13T17:19:51,540   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-13T17:19:53,363   Collecting setuptools>=45
2026-05-13T17:19:53,364     Obtaining dependency information for setuptools>=45 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-05-13T17:19:53,386     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-05-13T17:19:53,621   Collecting wheel
2026-05-13T17:19:53,622     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-05-13T17:19:53,635     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-05-13T17:19:53,984   Collecting setuptools_scm[toml]>=6.2
2026-05-13T17:19:53,985     Obtaining dependency information for setuptools_scm[toml]>=6.2 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata
2026-05-13T17:19:54,008     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB)
2026-05-13T17:19:54,018   Discarding https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl#sha256=600c37b3fea2bb517f59d76792adae856d0b5ce7735b186e4cde804375251321 (from https://www.piwheels.org/simple/setuptools-scm/) (requires-python:>=3.10): Requested setuptools_scm>=6.2 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl#sha256=600c37b3fea2bb517f59d76792adae856d0b5ce7735b186e4cde804375251321 has inconsistent Name: expected 'setuptools_scm', but metadata has 'setuptools-scm'
2026-05-13T17:19:54,041     Using cached setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-05-13T17:19:54,230   Collecting packaging>=24.0
2026-05-13T17:19:54,231     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-05-13T17:19:54,247     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-05-13T17:19:54,335   Collecting vcs-versioning>=1.0.0.dev0
2026-05-13T17:19:54,336     Obtaining dependency information for vcs-versioning>=1.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata
2026-05-13T17:19:54,357     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata (1.6 kB)
2026-05-13T17:19:54,597   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-05-13T17:19:54,621   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-05-13T17:19:54,640   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-05-13T17:19:54,729   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-05-13T17:19:54,769   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-05-13T17:19:54,798   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-05-13T17:19:54,827   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-05-13T17:19:54,941   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-05-13T17:19:57,725   Installing collected packages: setuptools, packaging, wheel, vcs-versioning, setuptools_scm
2026-05-13T17:20:01,218     Creating /tmp/pip-build-env-tg3kevm5/overlay/local/bin
2026-05-13T17:20:01,221     changing mode of /tmp/pip-build-env-tg3kevm5/overlay/local/bin/wheel to 755
2026-05-13T17:20:01,763     changing mode of /tmp/pip-build-env-tg3kevm5/overlay/local/bin/vcs-versioning to 755
2026-05-13T17:20:01,891     changing mode of /tmp/pip-build-env-tg3kevm5/overlay/local/bin/setuptools-scm to 755
2026-05-13T17:20:01,931   Successfully installed packaging-26.2 setuptools-82.0.1 setuptools_scm-10.0.5 vcs-versioning-1.1.1 wheel-0.47.0
2026-05-13T17:20:02,252   Installing build dependencies: finished with status 'done'
2026-05-13T17:20:02,258   Getting requirements to build wheel: started
2026-05-13T17:20:02,260   Running command Getting requirements to build wheel
2026-05-13T17:20:02,967   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-05-13T17:20:02,967   !!

2026-05-13T17:20:02,968           ********************************************************************************
2026-05-13T17:20:02,969           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-05-13T17:20:02,970           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-05-13T17:20:02,971           or your builds will no longer be supported.

2026-05-13T17:20:02,972           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-13T17:20:02,972           ********************************************************************************

2026-05-13T17:20:02,973   !!
2026-05-13T17:20:02,973     corresp(dist, value, root_dir)
2026-05-13T17:20:03,044   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-13T17:20:03,045   !!

2026-05-13T17:20:03,046           ********************************************************************************
2026-05-13T17:20:03,046           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-13T17:20:03,047           License :: OSI Approved :: MIT License

2026-05-13T17:20:03,048           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-13T17:20:03,048           ********************************************************************************

2026-05-13T17:20:03,049   !!
2026-05-13T17:20:03,050     dist._finalize_license_expression()
2026-05-13T17:20:03,052   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-13T17:20:03,052   !!

2026-05-13T17:20:03,053           ********************************************************************************
2026-05-13T17:20:03,054           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-13T17:20:03,055           License :: OSI Approved :: MIT License

2026-05-13T17:20:03,056           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-13T17:20:03,056           ********************************************************************************

2026-05-13T17:20:03,057   !!
2026-05-13T17:20:03,058     self._finalize_license_expression()
2026-05-13T17:20:03,064   running egg_info
2026-05-13T17:20:03,072   writing skimgpt.egg-info/PKG-INFO
2026-05-13T17:20:03,078   writing dependency_links to skimgpt.egg-info/dependency_links.txt
2026-05-13T17:20:03,081   writing entry points to skimgpt.egg-info/entry_points.txt
2026-05-13T17:20:03,084   writing requirements to skimgpt.egg-info/requires.txt
2026-05-13T17:20:03,086   writing top-level names to skimgpt.egg-info/top_level.txt
2026-05-13T17:20:03,135   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-13T17:20:03,135     return get_active_overrides().subprocess_timeout
2026-05-13T17:20:03,143   listing git files failed - pretending there aren't any
2026-05-13T17:20:03,148   reading manifest file 'skimgpt.egg-info/SOURCES.txt'
2026-05-13T17:20:03,154   reading manifest template 'MANIFEST.in'
2026-05-13T17:20:03,156   warning: no files found matching 'main.py'
2026-05-13T17:20:03,158   warning: no files found matching 'run_multiple_analyses.sh'
2026-05-13T17:20:03,159   warning: no files found matching '*.py' under directory 'src'
2026-05-13T17:20:03,160   warning: no files found matching '*.sh' under directory 'src'
2026-05-13T17:20:03,163   warning: no previously-included files found matching 'test/*'
2026-05-13T17:20:03,164   warning: no previously-included files found matching '.git*'
2026-05-13T17:20:03,165   warning: no previously-included files found matching '.pytest_cache'
2026-05-13T17:20:03,166   warning: no previously-included files found matching '__pycache__'
2026-05-13T17:20:03,167   warning: no previously-included files found matching '*.pyc'
2026-05-13T17:20:03,168   warning: no previously-included files found matching '.ipynb_checkpoints'
2026-05-13T17:20:03,174   writing manifest file 'skimgpt.egg-info/SOURCES.txt'
2026-05-13T17:20:03,277   Getting requirements to build wheel: finished with status 'done'
2026-05-13T17:20:03,281   Created temporary directory: /tmp/pip-modern-metadata-b5upzcs5
2026-05-13T17:20:03,283   Preparing metadata (pyproject.toml): started
2026-05-13T17:20:03,284   Running command Preparing metadata (pyproject.toml)
2026-05-13T17:20:03,981   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-05-13T17:20:03,982   !!

2026-05-13T17:20:03,983           ********************************************************************************
2026-05-13T17:20:03,983           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-05-13T17:20:03,984           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-05-13T17:20:03,985           or your builds will no longer be supported.

2026-05-13T17:20:03,986           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-13T17:20:03,986           ********************************************************************************

2026-05-13T17:20:03,987   !!
2026-05-13T17:20:03,988     corresp(dist, value, root_dir)
2026-05-13T17:20:04,055   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-13T17:20:04,055   !!

2026-05-13T17:20:04,056           ********************************************************************************
2026-05-13T17:20:04,057           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-13T17:20:04,058           License :: OSI Approved :: MIT License

2026-05-13T17:20:04,059           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-13T17:20:04,060           ********************************************************************************

2026-05-13T17:20:04,061   !!
2026-05-13T17:20:04,062     dist._finalize_license_expression()
2026-05-13T17:20:04,062   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-13T17:20:04,063   !!

2026-05-13T17:20:04,064           ********************************************************************************
2026-05-13T17:20:04,065           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-13T17:20:04,066           License :: OSI Approved :: MIT License

2026-05-13T17:20:04,067           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-13T17:20:04,068           ********************************************************************************

2026-05-13T17:20:04,069   !!
2026-05-13T17:20:04,070     self._finalize_license_expression()
2026-05-13T17:20:04,070   running dist_info
2026-05-13T17:20:04,084   creating /tmp/pip-modern-metadata-b5upzcs5/skimgpt.egg-info
2026-05-13T17:20:04,085   writing /tmp/pip-modern-metadata-b5upzcs5/skimgpt.egg-info/PKG-INFO
2026-05-13T17:20:04,091   writing dependency_links to /tmp/pip-modern-metadata-b5upzcs5/skimgpt.egg-info/dependency_links.txt
2026-05-13T17:20:04,093   writing entry points to /tmp/pip-modern-metadata-b5upzcs5/skimgpt.egg-info/entry_points.txt
2026-05-13T17:20:04,096   writing requirements to /tmp/pip-modern-metadata-b5upzcs5/skimgpt.egg-info/requires.txt
2026-05-13T17:20:04,097   writing top-level names to /tmp/pip-modern-metadata-b5upzcs5/skimgpt.egg-info/top_level.txt
2026-05-13T17:20:04,099   writing manifest file '/tmp/pip-modern-metadata-b5upzcs5/skimgpt.egg-info/SOURCES.txt'
2026-05-13T17:20:04,141   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-13T17:20:04,141     return get_active_overrides().subprocess_timeout
2026-05-13T17:20:04,148   listing git files failed - pretending there aren't any
2026-05-13T17:20:04,152   reading manifest file '/tmp/pip-modern-metadata-b5upzcs5/skimgpt.egg-info/SOURCES.txt'
2026-05-13T17:20:04,154   reading manifest template 'MANIFEST.in'
2026-05-13T17:20:04,155   warning: no files found matching 'main.py'
2026-05-13T17:20:04,156   warning: no files found matching 'run_multiple_analyses.sh'
2026-05-13T17:20:04,157   warning: no files found matching '*.py' under directory 'src'
2026-05-13T17:20:04,157   warning: no files found matching '*.sh' under directory 'src'
2026-05-13T17:20:04,159   warning: no previously-included files found matching 'test/*'
2026-05-13T17:20:04,160   warning: no previously-included files found matching '.git*'
2026-05-13T17:20:04,161   warning: no previously-included files found matching '.pytest_cache'
2026-05-13T17:20:04,161   warning: no previously-included files found matching '__pycache__'
2026-05-13T17:20:04,162   warning: no previously-included files found matching '*.pyc'
2026-05-13T17:20:04,163   warning: no previously-included files found matching '.ipynb_checkpoints'
2026-05-13T17:20:04,167   writing manifest file '/tmp/pip-modern-metadata-b5upzcs5/skimgpt.egg-info/SOURCES.txt'
2026-05-13T17:20:04,168   creating '/tmp/pip-modern-metadata-b5upzcs5/skimgpt-2.0.3.dist-info'
2026-05-13T17:20:04,302   Preparing metadata (pyproject.toml): finished with status 'done'
2026-05-13T17:20:04,307   Source in /tmp/pip-wheel-g4zo4xoy/skimgpt_2ec62f32b73248eb849555d0289b6186 has version 2.0.3, which satisfies requirement skimgpt==2.0.3 from https://files.pythonhosted.org/packages/a7/64/d1b8e1d7ed026d6a18876525b616aa86575b8766ca6175b75b21793253a6/skimgpt-2.0.3.tar.gz
2026-05-13T17:20:04,308   Removed skimgpt==2.0.3 from https://files.pythonhosted.org/packages/a7/64/d1b8e1d7ed026d6a18876525b616aa86575b8766ca6175b75b21793253a6/skimgpt-2.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-vbyujqq1'
2026-05-13T17:20:04,314 Created temporary directory: /tmp/pip-unpack-ha4pal97
2026-05-13T17:20:04,315 Building wheels for collected packages: skimgpt
2026-05-13T17:20:04,319   Created temporary directory: /tmp/pip-wheel-1vp1b8ny
2026-05-13T17:20:04,319   Destination directory: /tmp/pip-wheel-1vp1b8ny
2026-05-13T17:20:04,322   Building wheel for skimgpt (pyproject.toml): started
2026-05-13T17:20:04,323   Running command Building wheel for skimgpt (pyproject.toml)
2026-05-13T17:20:04,965   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-05-13T17:20:04,965   !!

2026-05-13T17:20:04,966           ********************************************************************************
2026-05-13T17:20:04,967           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-05-13T17:20:04,968           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-05-13T17:20:04,969           or your builds will no longer be supported.

2026-05-13T17:20:04,970           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-13T17:20:04,970           ********************************************************************************

2026-05-13T17:20:04,971   !!
2026-05-13T17:20:04,972     corresp(dist, value, root_dir)
2026-05-13T17:20:05,032   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-13T17:20:05,033   !!

2026-05-13T17:20:05,034           ********************************************************************************
2026-05-13T17:20:05,034           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-13T17:20:05,035           License :: OSI Approved :: MIT License

2026-05-13T17:20:05,036           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-13T17:20:05,036           ********************************************************************************

2026-05-13T17:20:05,037   !!
2026-05-13T17:20:05,038     dist._finalize_license_expression()
2026-05-13T17:20:05,038   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-13T17:20:05,039   !!

2026-05-13T17:20:05,040           ********************************************************************************
2026-05-13T17:20:05,040           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-13T17:20:05,042           License :: OSI Approved :: MIT License

2026-05-13T17:20:05,043           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-13T17:20:05,043           ********************************************************************************

2026-05-13T17:20:05,044   !!
2026-05-13T17:20:05,045     self._finalize_license_expression()
2026-05-13T17:20:05,045   running bdist_wheel
2026-05-13T17:20:05,064   running build
2026-05-13T17:20:05,065   running build_py
2026-05-13T17:20:05,067   creating build/lib/skimgpt
2026-05-13T17:20:05,069   copying skimgpt/skim_and_km_api.py -> build/lib/skimgpt
2026-05-13T17:20:05,071   copying skimgpt/retry.py -> build/lib/skimgpt
2026-05-13T17:20:05,073   copying skimgpt/relevance_helper.py -> build/lib/skimgpt
2026-05-13T17:20:05,076   copying skimgpt/htcondor_helper.py -> build/lib/skimgpt
2026-05-13T17:20:05,078   copying skimgpt/triton_client.py -> build/lib/skimgpt
2026-05-13T17:20:05,081   copying skimgpt/main.py -> build/lib/skimgpt
2026-05-13T17:20:05,084   copying skimgpt/relevance_triton.py -> build/lib/skimgpt
2026-05-13T17:20:05,086   copying skimgpt/cost_estimator.py -> build/lib/skimgpt
2026-05-13T17:20:05,089   copying skimgpt/prompt_library.py -> build/lib/skimgpt
2026-05-13T17:20:05,091   copying skimgpt/classifier.py -> build/lib/skimgpt
2026-05-13T17:20:05,094   copying skimgpt/pubmed_fetcher.py -> build/lib/skimgpt
2026-05-13T17:20:05,096   copying skimgpt/eval_JSON_results.py -> build/lib/skimgpt
2026-05-13T17:20:05,099   copying skimgpt/relevance_chtc.py -> build/lib/skimgpt
2026-05-13T17:20:05,101   copying skimgpt/scoring_guidelines.py -> build/lib/skimgpt
2026-05-13T17:20:05,103   copying skimgpt/utils.py -> build/lib/skimgpt
2026-05-13T17:20:05,106   copying skimgpt/__init__.py -> build/lib/skimgpt
2026-05-13T17:20:05,108   creating build/lib/skimgpt/visualization
2026-05-13T17:20:05,109   copying skimgpt/visualization/bayesian_ci.py -> build/lib/skimgpt/visualization
2026-05-13T17:20:05,112   copying skimgpt/visualization/hyp_stats.py -> build/lib/skimgpt/visualization
2026-05-13T17:20:05,115   copying skimgpt/visualization/plot_separate_runs.py -> build/lib/skimgpt/visualization
2026-05-13T17:20:05,117   copying skimgpt/visualization/plot_hyp_stats.py -> build/lib/skimgpt/visualization
2026-05-13T17:20:05,120   copying skimgpt/visualization/__init__.py -> build/lib/skimgpt/visualization
2026-05-13T17:20:05,121   running egg_info
2026-05-13T17:20:05,134   writing skimgpt.egg-info/PKG-INFO
2026-05-13T17:20:05,140   writing dependency_links to skimgpt.egg-info/dependency_links.txt
2026-05-13T17:20:05,142   writing entry points to skimgpt.egg-info/entry_points.txt
2026-05-13T17:20:05,144   writing requirements to skimgpt.egg-info/requires.txt
2026-05-13T17:20:05,145   writing top-level names to skimgpt.egg-info/top_level.txt
2026-05-13T17:20:05,180   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-13T17:20:05,180     return get_active_overrides().subprocess_timeout
2026-05-13T17:20:05,186   listing git files failed - pretending there aren't any
2026-05-13T17:20:05,190   reading manifest file 'skimgpt.egg-info/SOURCES.txt'
2026-05-13T17:20:05,195   reading manifest template 'MANIFEST.in'
2026-05-13T17:20:05,196   warning: no files found matching 'main.py'
2026-05-13T17:20:05,197   warning: no files found matching 'run_multiple_analyses.sh'
2026-05-13T17:20:05,198   warning: no files found matching '*.py' under directory 'src'
2026-05-13T17:20:05,198   warning: no files found matching '*.sh' under directory 'src'
2026-05-13T17:20:05,200   warning: no previously-included files found matching 'test/*'
2026-05-13T17:20:05,201   warning: no previously-included files found matching '.git*'
2026-05-13T17:20:05,201   warning: no previously-included files found matching '.pytest_cache'
2026-05-13T17:20:05,202   warning: no previously-included files found matching '__pycache__'
2026-05-13T17:20:05,202   warning: no previously-included files found matching '*.pyc'
2026-05-13T17:20:05,203   warning: no previously-included files found matching '.ipynb_checkpoints'
2026-05-13T17:20:05,208   writing manifest file 'skimgpt.egg-info/SOURCES.txt'
2026-05-13T17:20:05,210   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.CVD_HormonevsStatins' is absent from the `packages` configuration.
2026-05-13T17:20:05,211   !!

2026-05-13T17:20:05,212           ********************************************************************************
2026-05-13T17:20:05,213           ############################
2026-05-13T17:20:05,213           # Package would be ignored #
2026-05-13T17:20:05,214           ############################
2026-05-13T17:20:05,214           Python recognizes 'skimgpt.visualization.example_data.CVD_HormonevsStatins' as an importable package[^1],
2026-05-13T17:20:05,215           but it is absent from setuptools' `packages` configuration.

2026-05-13T17:20:05,216           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-13T17:20:05,217           package, please make sure that 'skimgpt.visualization.example_data.CVD_HormonevsStatins' is explicitly added
2026-05-13T17:20:05,217           to the `packages` configuration field.

2026-05-13T17:20:05,218           Alternatively, you can also rely on setuptools' discovery methods
2026-05-13T17:20:05,219           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-13T17:20:05,219           instead of `find_packages(...)`/`find:`).

2026-05-13T17:20:05,220           You can read more about "package discovery" on setuptools documentation page:

2026-05-13T17:20:05,221           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-13T17:20:05,222           If you don't want 'skimgpt.visualization.example_data.CVD_HormonevsStatins' to be distributed and are
2026-05-13T17:20:05,223           already explicitly excluding 'skimgpt.visualization.example_data.CVD_HormonevsStatins' via
2026-05-13T17:20:05,223           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-13T17:20:05,224           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-13T17:20:05,224           combination with a more fine grained `package-data` configuration.

2026-05-13T17:20:05,226           You can read more about "package data files" on setuptools documentation page:

2026-05-13T17:20:05,227           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-13T17:20:05,228           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-13T17:20:05,228                 even if it does not contain any `.py` files.
2026-05-13T17:20:05,229                 On the other hand, currently there is no concept of package data
2026-05-13T17:20:05,229                 directory, all directories are treated like packages.
2026-05-13T17:20:05,229           ********************************************************************************

2026-05-13T17:20:05,230   !!
2026-05-13T17:20:05,231     check.warn(importable)
2026-05-13T17:20:05,231   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.autism_GPvsVaccine' is absent from the `packages` configuration.
2026-05-13T17:20:05,232   !!

2026-05-13T17:20:05,233           ********************************************************************************
2026-05-13T17:20:05,233           ############################
2026-05-13T17:20:05,234           # Package would be ignored #
2026-05-13T17:20:05,234           ############################
2026-05-13T17:20:05,234           Python recognizes 'skimgpt.visualization.example_data.autism_GPvsVaccine' as an importable package[^1],
2026-05-13T17:20:05,235           but it is absent from setuptools' `packages` configuration.

2026-05-13T17:20:05,236           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-13T17:20:05,236           package, please make sure that 'skimgpt.visualization.example_data.autism_GPvsVaccine' is explicitly added
2026-05-13T17:20:05,237           to the `packages` configuration field.

2026-05-13T17:20:05,237           Alternatively, you can also rely on setuptools' discovery methods
2026-05-13T17:20:05,238           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-13T17:20:05,238           instead of `find_packages(...)`/`find:`).

2026-05-13T17:20:05,239           You can read more about "package discovery" on setuptools documentation page:

2026-05-13T17:20:05,241           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-13T17:20:05,241           If you don't want 'skimgpt.visualization.example_data.autism_GPvsVaccine' to be distributed and are
2026-05-13T17:20:05,242           already explicitly excluding 'skimgpt.visualization.example_data.autism_GPvsVaccine' via
2026-05-13T17:20:05,243           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-13T17:20:05,243           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-13T17:20:05,244           combination with a more fine grained `package-data` configuration.

2026-05-13T17:20:05,245           You can read more about "package data files" on setuptools documentation page:

2026-05-13T17:20:05,246           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-13T17:20:05,247           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-13T17:20:05,248                 even if it does not contain any `.py` files.
2026-05-13T17:20:05,248                 On the other hand, currently there is no concept of package data
2026-05-13T17:20:05,249                 directory, all directories are treated like packages.
2026-05-13T17:20:05,249           ********************************************************************************

2026-05-13T17:20:05,250   !!
2026-05-13T17:20:05,250     check.warn(importable)
2026-05-13T17:20:05,251   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.autism_microbiomeVsGP' is absent from the `packages` configuration.
2026-05-13T17:20:05,251   !!

2026-05-13T17:20:05,253           ********************************************************************************
2026-05-13T17:20:05,253           ############################
2026-05-13T17:20:05,254           # Package would be ignored #
2026-05-13T17:20:05,254           ############################
2026-05-13T17:20:05,255           Python recognizes 'skimgpt.visualization.example_data.autism_microbiomeVsGP' as an importable package[^1],
2026-05-13T17:20:05,255           but it is absent from setuptools' `packages` configuration.

2026-05-13T17:20:05,256           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-13T17:20:05,256           package, please make sure that 'skimgpt.visualization.example_data.autism_microbiomeVsGP' is explicitly added
2026-05-13T17:20:05,257           to the `packages` configuration field.

2026-05-13T17:20:05,258           Alternatively, you can also rely on setuptools' discovery methods
2026-05-13T17:20:05,258           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-13T17:20:05,259           instead of `find_packages(...)`/`find:`).

2026-05-13T17:20:05,259           You can read more about "package discovery" on setuptools documentation page:

2026-05-13T17:20:05,261           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-13T17:20:05,262           If you don't want 'skimgpt.visualization.example_data.autism_microbiomeVsGP' to be distributed and are
2026-05-13T17:20:05,262           already explicitly excluding 'skimgpt.visualization.example_data.autism_microbiomeVsGP' via
2026-05-13T17:20:05,263           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-13T17:20:05,263           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-13T17:20:05,264           combination with a more fine grained `package-data` configuration.

2026-05-13T17:20:05,265           You can read more about "package data files" on setuptools documentation page:

2026-05-13T17:20:05,266           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-13T17:20:05,267           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-13T17:20:05,267                 even if it does not contain any `.py` files.
2026-05-13T17:20:05,268                 On the other hand, currently there is no concept of package data
2026-05-13T17:20:05,269                 directory, all directories are treated like packages.
2026-05-13T17:20:05,269           ********************************************************************************

2026-05-13T17:20:05,270   !!
2026-05-13T17:20:05,271     check.warn(importable)
2026-05-13T17:20:05,271   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.autism_microbiomevsVax' is absent from the `packages` configuration.
2026-05-13T17:20:05,272   !!

2026-05-13T17:20:05,273           ********************************************************************************
2026-05-13T17:20:05,273           ############################
2026-05-13T17:20:05,274           # Package would be ignored #
2026-05-13T17:20:05,274           ############################
2026-05-13T17:20:05,275           Python recognizes 'skimgpt.visualization.example_data.autism_microbiomevsVax' as an importable package[^1],
2026-05-13T17:20:05,275           but it is absent from setuptools' `packages` configuration.

2026-05-13T17:20:05,276           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-13T17:20:05,277           package, please make sure that 'skimgpt.visualization.example_data.autism_microbiomevsVax' is explicitly added
2026-05-13T17:20:05,277           to the `packages` configuration field.

2026-05-13T17:20:05,279           Alternatively, you can also rely on setuptools' discovery methods
2026-05-13T17:20:05,279           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-13T17:20:05,280           instead of `find_packages(...)`/`find:`).

2026-05-13T17:20:05,281           You can read more about "package discovery" on setuptools documentation page:

2026-05-13T17:20:05,282           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-13T17:20:05,283           If you don't want 'skimgpt.visualization.example_data.autism_microbiomevsVax' to be distributed and are
2026-05-13T17:20:05,284           already explicitly excluding 'skimgpt.visualization.example_data.autism_microbiomevsVax' via
2026-05-13T17:20:05,285           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-13T17:20:05,286           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-13T17:20:05,286           combination with a more fine grained `package-data` configuration.

2026-05-13T17:20:05,287           You can read more about "package data files" on setuptools documentation page:

2026-05-13T17:20:05,288           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-13T17:20:05,289           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-13T17:20:05,290                 even if it does not contain any `.py` files.
2026-05-13T17:20:05,290                 On the other hand, currently there is no concept of package data
2026-05-13T17:20:05,291                 directory, all directories are treated like packages.
2026-05-13T17:20:05,291           ********************************************************************************

2026-05-13T17:20:05,292   !!
2026-05-13T17:20:05,293     check.warn(importable)
2026-05-13T17:20:05,293   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.cervical_cancer' is absent from the `packages` configuration.
2026-05-13T17:20:05,294   !!

2026-05-13T17:20:05,295           ********************************************************************************
2026-05-13T17:20:05,295           ############################
2026-05-13T17:20:05,296           # Package would be ignored #
2026-05-13T17:20:05,296           ############################
2026-05-13T17:20:05,297           Python recognizes 'skimgpt.visualization.example_data.cervical_cancer' as an importable package[^1],
2026-05-13T17:20:05,297           but it is absent from setuptools' `packages` configuration.

2026-05-13T17:20:05,298           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-13T17:20:05,299           package, please make sure that 'skimgpt.visualization.example_data.cervical_cancer' is explicitly added
2026-05-13T17:20:05,299           to the `packages` configuration field.

2026-05-13T17:20:05,300           Alternatively, you can also rely on setuptools' discovery methods
2026-05-13T17:20:05,301           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-13T17:20:05,301           instead of `find_packages(...)`/`find:`).

2026-05-13T17:20:05,303           You can read more about "package discovery" on setuptools documentation page:

2026-05-13T17:20:05,303           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-13T17:20:05,304           If you don't want 'skimgpt.visualization.example_data.cervical_cancer' to be distributed and are
2026-05-13T17:20:05,305           already explicitly excluding 'skimgpt.visualization.example_data.cervical_cancer' via
2026-05-13T17:20:05,306           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-13T17:20:05,306           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-13T17:20:05,307           combination with a more fine grained `package-data` configuration.

2026-05-13T17:20:05,308           You can read more about "package data files" on setuptools documentation page:

2026-05-13T17:20:05,309           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-13T17:20:05,311           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-13T17:20:05,311                 even if it does not contain any `.py` files.
2026-05-13T17:20:05,312                 On the other hand, currently there is no concept of package data
2026-05-13T17:20:05,312                 directory, all directories are treated like packages.
2026-05-13T17:20:05,313           ********************************************************************************

2026-05-13T17:20:05,313   !!
2026-05-13T17:20:05,314     check.warn(importable)
2026-05-13T17:20:05,314   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.peptic_ulcer' is absent from the `packages` configuration.
2026-05-13T17:20:05,315   !!

2026-05-13T17:20:05,315           ********************************************************************************
2026-05-13T17:20:05,316           ############################
2026-05-13T17:20:05,316           # Package would be ignored #
2026-05-13T17:20:05,317           ############################
2026-05-13T17:20:05,317           Python recognizes 'skimgpt.visualization.example_data.peptic_ulcer' as an importable package[^1],
2026-05-13T17:20:05,318           but it is absent from setuptools' `packages` configuration.

2026-05-13T17:20:05,318           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-13T17:20:05,319           package, please make sure that 'skimgpt.visualization.example_data.peptic_ulcer' is explicitly added
2026-05-13T17:20:05,319           to the `packages` configuration field.

2026-05-13T17:20:05,320           Alternatively, you can also rely on setuptools' discovery methods
2026-05-13T17:20:05,321           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-13T17:20:05,321           instead of `find_packages(...)`/`find:`).

2026-05-13T17:20:05,322           You can read more about "package discovery" on setuptools documentation page:

2026-05-13T17:20:05,323           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-13T17:20:05,324           If you don't want 'skimgpt.visualization.example_data.peptic_ulcer' to be distributed and are
2026-05-13T17:20:05,325           already explicitly excluding 'skimgpt.visualization.example_data.peptic_ulcer' via
2026-05-13T17:20:05,326           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-13T17:20:05,326           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-13T17:20:05,327           combination with a more fine grained `package-data` configuration.

2026-05-13T17:20:05,328           You can read more about "package data files" on setuptools documentation page:

2026-05-13T17:20:05,328           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-13T17:20:05,330           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-13T17:20:05,330                 even if it does not contain any `.py` files.
2026-05-13T17:20:05,331                 On the other hand, currently there is no concept of package data
2026-05-13T17:20:05,331                 directory, all directories are treated like packages.
2026-05-13T17:20:05,332           ********************************************************************************

2026-05-13T17:20:05,333   !!
2026-05-13T17:20:05,334     check.warn(importable)
2026-05-13T17:20:05,334   /tmp/pip-build-env-tg3kevm5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.scrapie' is absent from the `packages` configuration.
2026-05-13T17:20:05,335   !!

2026-05-13T17:20:05,336           ********************************************************************************
2026-05-13T17:20:05,337           ############################
2026-05-13T17:20:05,337           # Package would be ignored #
2026-05-13T17:20:05,338           ############################
2026-05-13T17:20:05,338           Python recognizes 'skimgpt.visualization.example_data.scrapie' as an importable package[^1],
2026-05-13T17:20:05,339           but it is absent from setuptools' `packages` configuration.

2026-05-13T17:20:05,340           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-13T17:20:05,340           package, please make sure that 'skimgpt.visualization.example_data.scrapie' is explicitly added
2026-05-13T17:20:05,341           to the `packages` configuration field.

2026-05-13T17:20:05,341           Alternatively, you can also rely on setuptools' discovery methods
2026-05-13T17:20:05,342           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-13T17:20:05,342           instead of `find_packages(...)`/`find:`).

2026-05-13T17:20:05,343           You can read more about "package discovery" on setuptools documentation page:

2026-05-13T17:20:05,344           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-13T17:20:05,344           If you don't want 'skimgpt.visualization.example_data.scrapie' to be distributed and are
2026-05-13T17:20:05,345           already explicitly excluding 'skimgpt.visualization.example_data.scrapie' via
2026-05-13T17:20:05,345           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-13T17:20:05,346           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-13T17:20:05,346           combination with a more fine grained `package-data` configuration.

2026-05-13T17:20:05,347           You can read more about "package data files" on setuptools documentation page:

2026-05-13T17:20:05,348           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-13T17:20:05,349           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-13T17:20:05,350                 even if it does not contain any `.py` files.
2026-05-13T17:20:05,350                 On the other hand, currently there is no concept of package data
2026-05-13T17:20:05,351                 directory, all directories are treated like packages.
2026-05-13T17:20:05,351           ********************************************************************************

2026-05-13T17:20:05,352   !!
2026-05-13T17:20:05,353     check.warn(importable)
2026-05-13T17:20:05,353   copying skimgpt/run.sh -> build/lib/skimgpt
2026-05-13T17:20:05,354   copying skimgpt/visualization/bayesian_ci_commandline.txt -> build/lib/skimgpt/visualization
2026-05-13T17:20:05,354   copying skimgpt/visualization/hyp_stats_commandline.txt -> build/lib/skimgpt/visualization
2026-05-13T17:20:05,355   copying skimgpt/visualization/plot_hyp_stats_commandline.txt -> build/lib/skimgpt/visualization
2026-05-13T17:20:05,355   copying skimgpt/visualization/plot_separate_runs_commandline.txt -> build/lib/skimgpt/visualization
2026-05-13T17:20:05,356   creating build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-13T17:20:05,356   copying skimgpt/visualization/example_data/CVD_HormonevsStatins/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-13T17:20:05,357   copying skimgpt/visualization/example_data/CVD_HormonevsStatins/km_kept.txt -> build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-13T17:20:05,357   creating build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-13T17:20:05,358   copying skimgpt/visualization/example_data/autism_GPvsVaccine/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-13T17:20:05,358   copying skimgpt/visualization/example_data/autism_GPvsVaccine/km_kept.txt -> build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-13T17:20:05,359   creating build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-13T17:20:05,360   copying skimgpt/visualization/example_data/autism_microbiomeVsGP/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-13T17:20:05,360   copying skimgpt/visualization/example_data/autism_microbiomeVsGP/km_kept.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-13T17:20:05,361   creating build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-13T17:20:05,361   copying skimgpt/visualization/example_data/autism_microbiomevsVax/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-13T17:20:05,362   copying skimgpt/visualization/example_data/autism_microbiomevsVax/km_kept.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-13T17:20:05,362   creating build/lib/skimgpt/visualization/example_data/cervical_cancer
2026-05-13T17:20:05,362   copying skimgpt/visualization/example_data/cervical_cancer/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/cervical_cancer
2026-05-13T17:20:05,363   copying skimgpt/visualization/example_data/cervical_cancer/km_kept.txt -> build/lib/skimgpt/visualization/example_data/cervical_cancer
2026-05-13T17:20:05,363   creating build/lib/skimgpt/visualization/example_data/peptic_ulcer
2026-05-13T17:20:05,364   copying skimgpt/visualization/example_data/peptic_ulcer/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/peptic_ulcer
2026-05-13T17:20:05,364   copying skimgpt/visualization/example_data/peptic_ulcer/km_kept.txt -> build/lib/skimgpt/visualization/example_data/peptic_ulcer
2026-05-13T17:20:05,365   creating build/lib/skimgpt/visualization/example_data/scrapie
2026-05-13T17:20:05,365   copying skimgpt/visualization/example_data/scrapie/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/scrapie
2026-05-13T17:20:05,366   copying skimgpt/visualization/example_data/scrapie/km_kept.txt -> build/lib/skimgpt/visualization/example_data/scrapie
2026-05-13T17:20:05,366   installing to build/bdist.linux-armv7l/wheel
2026-05-13T17:20:05,367   running install
2026-05-13T17:20:05,367   running install_lib
2026-05-13T17:20:05,369   creating build/bdist.linux-armv7l/wheel
2026-05-13T17:20:05,371   creating build/bdist.linux-armv7l/wheel/skimgpt
2026-05-13T17:20:05,372   copying build/lib/skimgpt/skim_and_km_api.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,375   copying build/lib/skimgpt/retry.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,377   copying build/lib/skimgpt/relevance_helper.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,380   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization
2026-05-13T17:20:05,381   copying build/lib/skimgpt/visualization/bayesian_ci.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-13T17:20:05,383   copying build/lib/skimgpt/visualization/hyp_stats_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-13T17:20:05,385   copying build/lib/skimgpt/visualization/hyp_stats.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-13T17:20:05,388   copying build/lib/skimgpt/visualization/plot_separate_runs.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-13T17:20:05,391   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data
2026-05-13T17:20:05,392   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-13T17:20:05,393   copying build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-13T17:20:05,396   copying build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-13T17:20:05,400   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-13T17:20:05,401   copying build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-13T17:20:05,403   copying build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-13T17:20:05,406   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/cervical_cancer
2026-05-13T17:20:05,407   copying build/lib/skimgpt/visualization/example_data/cervical_cancer/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/cervical_cancer
2026-05-13T17:20:05,411   copying build/lib/skimgpt/visualization/example_data/cervical_cancer/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/cervical_cancer
2026-05-13T17:20:05,415   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/peptic_ulcer
2026-05-13T17:20:05,416   copying build/lib/skimgpt/visualization/example_data/peptic_ulcer/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/peptic_ulcer
2026-05-13T17:20:05,418   copying build/lib/skimgpt/visualization/example_data/peptic_ulcer/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/peptic_ulcer
2026-05-13T17:20:05,422   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-13T17:20:05,423   copying build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-13T17:20:05,426   copying build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-13T17:20:05,429   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-13T17:20:05,430   copying build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-13T17:20:05,432   copying build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-13T17:20:05,436   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/scrapie
2026-05-13T17:20:05,437   copying build/lib/skimgpt/visualization/example_data/scrapie/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/scrapie
2026-05-13T17:20:05,440   copying build/lib/skimgpt/visualization/example_data/scrapie/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/scrapie
2026-05-13T17:20:05,443   copying build/lib/skimgpt/visualization/plot_separate_runs_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-13T17:20:05,444   copying build/lib/skimgpt/visualization/bayesian_ci_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-13T17:20:05,446   copying build/lib/skimgpt/visualization/plot_hyp_stats.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-13T17:20:05,448   copying build/lib/skimgpt/visualization/plot_hyp_stats_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-13T17:20:05,450   copying build/lib/skimgpt/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-13T17:20:05,452   copying build/lib/skimgpt/run.sh -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,454   copying build/lib/skimgpt/htcondor_helper.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,456   copying build/lib/skimgpt/triton_client.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,458   copying build/lib/skimgpt/main.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,461   copying build/lib/skimgpt/relevance_triton.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,463   copying build/lib/skimgpt/cost_estimator.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,465   copying build/lib/skimgpt/prompt_library.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,468   copying build/lib/skimgpt/classifier.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,470   copying build/lib/skimgpt/pubmed_fetcher.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,473   copying build/lib/skimgpt/eval_JSON_results.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,475   copying build/lib/skimgpt/relevance_chtc.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,477   copying build/lib/skimgpt/scoring_guidelines.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,479   copying build/lib/skimgpt/utils.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,482   copying build/lib/skimgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-13T17:20:05,483   running install_egg_info
2026-05-13T17:20:05,490   Copying skimgpt.egg-info to build/bdist.linux-armv7l/wheel/./skimgpt-2.0.3-py3.11.egg-info
2026-05-13T17:20:05,500   running install_scripts
2026-05-13T17:20:05,509   creating build/bdist.linux-armv7l/wheel/skimgpt-2.0.3.dist-info/WHEEL
2026-05-13T17:20:05,511   creating '/tmp/pip-wheel-1vp1b8ny/.tmp-0nki3hf_/skimgpt-2.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-05-13T17:20:05,514   adding 'skimgpt/__init__.py'
2026-05-13T17:20:05,517   adding 'skimgpt/classifier.py'
2026-05-13T17:20:05,519   adding 'skimgpt/cost_estimator.py'
2026-05-13T17:20:05,520   adding 'skimgpt/eval_JSON_results.py'
2026-05-13T17:20:05,522   adding 'skimgpt/htcondor_helper.py'
2026-05-13T17:20:05,524   adding 'skimgpt/main.py'
2026-05-13T17:20:05,528   adding 'skimgpt/prompt_library.py'
2026-05-13T17:20:05,530   adding 'skimgpt/pubmed_fetcher.py'
2026-05-13T17:20:05,532   adding 'skimgpt/relevance_chtc.py'
2026-05-13T17:20:05,535   adding 'skimgpt/relevance_helper.py'
2026-05-13T17:20:05,537   adding 'skimgpt/relevance_triton.py'
2026-05-13T17:20:05,539   adding 'skimgpt/retry.py'
2026-05-13T17:20:05,540   adding 'skimgpt/run.sh'
2026-05-13T17:20:05,542   adding 'skimgpt/scoring_guidelines.py'
2026-05-13T17:20:05,544   adding 'skimgpt/skim_and_km_api.py'
2026-05-13T17:20:05,546   adding 'skimgpt/triton_client.py'
2026-05-13T17:20:05,550   adding 'skimgpt/utils.py'
2026-05-13T17:20:05,552   adding 'skimgpt/visualization/__init__.py'
2026-05-13T17:20:05,554   adding 'skimgpt/visualization/bayesian_ci.py'
2026-05-13T17:20:05,555   adding 'skimgpt/visualization/bayesian_ci_commandline.txt'
2026-05-13T17:20:05,559   adding 'skimgpt/visualization/hyp_stats.py'
2026-05-13T17:20:05,560   adding 'skimgpt/visualization/hyp_stats_commandline.txt'
2026-05-13T17:20:05,562   adding 'skimgpt/visualization/plot_hyp_stats.py'
2026-05-13T17:20:05,564   adding 'skimgpt/visualization/plot_hyp_stats_commandline.txt'
2026-05-13T17:20:05,565   adding 'skimgpt/visualization/plot_separate_runs.py'
2026-05-13T17:20:05,567   adding 'skimgpt/visualization/plot_separate_runs_commandline.txt'
2026-05-13T17:20:05,569   adding 'skimgpt/visualization/example_data/CVD_HormonevsStatins/km_hyp_stats.txt'
2026-05-13T17:20:05,573   adding 'skimgpt/visualization/example_data/CVD_HormonevsStatins/km_kept.txt'
2026-05-13T17:20:05,576   adding 'skimgpt/visualization/example_data/autism_GPvsVaccine/km_hyp_stats.txt'
2026-05-13T17:20:05,579   adding 'skimgpt/visualization/example_data/autism_GPvsVaccine/km_kept.txt'
2026-05-13T17:20:05,582   adding 'skimgpt/visualization/example_data/autism_microbiomeVsGP/km_hyp_stats.txt'
2026-05-13T17:20:05,585   adding 'skimgpt/visualization/example_data/autism_microbiomeVsGP/km_kept.txt'
2026-05-13T17:20:05,587   adding 'skimgpt/visualization/example_data/autism_microbiomevsVax/km_hyp_stats.txt'
2026-05-13T17:20:05,591   adding 'skimgpt/visualization/example_data/autism_microbiomevsVax/km_kept.txt'
2026-05-13T17:20:05,595   adding 'skimgpt/visualization/example_data/cervical_cancer/km_hyp_stats.txt'
2026-05-13T17:20:05,602   adding 'skimgpt/visualization/example_data/cervical_cancer/km_kept.txt'
2026-05-13T17:20:05,605   adding 'skimgpt/visualization/example_data/peptic_ulcer/km_hyp_stats.txt'
2026-05-13T17:20:05,609   adding 'skimgpt/visualization/example_data/peptic_ulcer/km_kept.txt'
2026-05-13T17:20:05,614   adding 'skimgpt/visualization/example_data/scrapie/km_hyp_stats.txt'
2026-05-13T17:20:05,617   adding 'skimgpt/visualization/example_data/scrapie/km_kept.txt'
2026-05-13T17:20:05,620   adding 'skimgpt-2.0.3.dist-info/METADATA'
2026-05-13T17:20:05,621   adding 'skimgpt-2.0.3.dist-info/WHEEL'
2026-05-13T17:20:05,622   adding 'skimgpt-2.0.3.dist-info/entry_points.txt'
2026-05-13T17:20:05,623   adding 'skimgpt-2.0.3.dist-info/top_level.txt'
2026-05-13T17:20:05,625   adding 'skimgpt-2.0.3.dist-info/RECORD'
2026-05-13T17:20:05,628   removing build/bdist.linux-armv7l/wheel
2026-05-13T17:20:05,745   Building wheel for skimgpt (pyproject.toml): finished with status 'done'
2026-05-13T17:20:05,754   Created wheel for skimgpt: filename=skimgpt-2.0.3-py3-none-any.whl size=172403 sha256=96274a5d0db86ac16b3f8dbe36bf52ff08239c4faf4513285ac5bac8d5c3aeb0
2026-05-13T17:20:05,755   Stored in directory: /tmp/pip-ephem-wheel-cache-nie4gsow/wheels/82/61/86/f67813712a9280e858c93310a4b7bbf8792d4ce9fb2b6264ef
2026-05-13T17:20:05,768 Successfully built skimgpt
2026-05-13T17:20:05,776 Removed build tracker: '/tmp/pip-build-tracker-vbyujqq1'