2026-05-13T18:35:46,563 Created temporary directory: /tmp/pip-ephem-wheel-cache-10tob1y7 2026-05-13T18:35:46,565 Created temporary directory: /tmp/pip-build-tracker-tlvzk849 2026-05-13T18:35:46,565 Initialized build tracking at /tmp/pip-build-tracker-tlvzk849 2026-05-13T18:35:46,566 Created build tracker: /tmp/pip-build-tracker-tlvzk849 2026-05-13T18:35:46,566 Entered build tracker: /tmp/pip-build-tracker-tlvzk849 2026-05-13T18:35:46,567 Created temporary directory: /tmp/pip-wheel-q3izvgl8 2026-05-13T18:35:46,570 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-13T18:35:46,572 Created temporary directory: /tmp/pip-ephem-wheel-cache-fnuam2vx 2026-05-13T18:35:46,594 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-13T18:35:46,598 2 location(s) to search for versions of onecodex: 2026-05-13T18:35:46,598 * https://pypi.org/simple/onecodex/ 2026-05-13T18:35:46,598 * https://www.piwheels.org/simple/onecodex/ 2026-05-13T18:35:46,598 Fetching project page and analyzing links: https://pypi.org/simple/onecodex/ 2026-05-13T18:35:46,599 Getting page https://pypi.org/simple/onecodex/ 2026-05-13T18:35:46,600 Found index url https://pypi.org/simple 2026-05-13T18:35:46,842 Fetched page https://pypi.org/simple/onecodex/ as application/vnd.pypi.simple.v1+json 2026-05-13T18:35:46,860 Found link https://files.pythonhosted.org/packages/24/9c/73c8ee44a2cc65e1d62fcd0ba2a47860f6d038086b3f68a831ce1c387185/onecodex-0.0.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.1 2026-05-13T18:35:46,861 Found link https://files.pythonhosted.org/packages/9f/f7/19126a7a026e4d3d4b5dae5300563dd40eedde1ebd7c0ea45d63a5b4a5fa/onecodex-0.0.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.2 2026-05-13T18:35:46,861 Found link https://files.pythonhosted.org/packages/f1/fb/4bd94bcb3ab1b60d5012d87960cf512ba15e55a41604e4cf95b688c6663e/onecodex-0.0.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.3 2026-05-13T18:35:46,862 Found link https://files.pythonhosted.org/packages/72/d4/ecf6ce45289f863da44f3679a80890befaf777b56518e4e0687e103f9839/onecodex-0.0.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.4 2026-05-13T18:35:46,863 Found link https://files.pythonhosted.org/packages/d8/c1/fa293e0fca99ec13e7b102bf370531ac7f191841f86cbe4f49164faee3b1/onecodex-0.0.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.5 2026-05-13T18:35:46,864 Found link https://files.pythonhosted.org/packages/fd/bd/b242968f0032bfdaccc3b0e99351e06027dac68ab674be09885cae806460/onecodex-0.0.6.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.6 2026-05-13T18:35:46,864 Found link https://files.pythonhosted.org/packages/20/2e/d7f2cd658103b3f4fd995b058efa264add5f16eb83c208ea72963076d5f2/onecodex-0.0.7.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.7 2026-05-13T18:35:46,865 Found link https://files.pythonhosted.org/packages/2e/df/819bf3408acaef4ed99f2acef6d532e73a27c57031ca2bb5c76f4405d50a/onecodex-0.0.8.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.8 2026-05-13T18:35:46,866 Found link https://files.pythonhosted.org/packages/c8/32/87228c95b42bf63e56c4735afb93ee67f95188a5b48936a489b1390c97cd/onecodex-0.0.9.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.9 2026-05-13T18:35:46,866 Found link https://files.pythonhosted.org/packages/a3/1a/dcc608efe8f43446c671d58dcc3eb81edf9730bb90ab1a57b7a2315d67b4/onecodex-0.0.10.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.10 2026-05-13T18:35:46,867 Found link https://files.pythonhosted.org/packages/fa/cf/5d9bde531654457b5aad1c2612a830bc34f981ff288c1ba206a2e89152cf/onecodex-0.1.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.0 2026-05-13T18:35:46,868 Found link https://files.pythonhosted.org/packages/6a/66/8a636283b765fd9a02c111ea0094ff7206360245a22fd188fc7ba0b0fa4e/onecodex-0.1.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.1 2026-05-13T18:35:46,869 Found link https://files.pythonhosted.org/packages/82/b0/a7edb3d0fa23fd8d6c17e7dc2d90ae717a164f04d799ea00aa78af5441df/onecodex-0.1.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.2 2026-05-13T18:35:46,869 Found link https://files.pythonhosted.org/packages/24/d1/54d92de5608800360a596c150c291000b4d1804be08b9d3ef00b108f0132/onecodex-0.1.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.3 2026-05-13T18:35:46,870 Found link https://files.pythonhosted.org/packages/21/d5/846f358c3add03793ccd2d3e74b6c2fad2e9acea92fc2777e732a97652d0/onecodex-0.1.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.4 2026-05-13T18:35:46,870 Found link https://files.pythonhosted.org/packages/85/b8/546d5d950ef763ebf55e4e56149b006d102e3c4c8274dabbd402c9d7fe6b/onecodex-0.2.0a0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.0a0 2026-05-13T18:35:46,871 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/da/aea6d3115e6e56289c40bec0f0668bf57755d7cf575eb762c928576aa7f1/onecodex-0.2.0a1-py2.7.egg (from https://pypi.org/simple/onecodex/) 2026-05-13T18:35:46,871 Found link https://files.pythonhosted.org/packages/bd/a6/328333ca642aa278b806f670bf2dbff3e1fd7892b7868f96289663def0a4/onecodex-0.2.0a1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.0a1 2026-05-13T18:35:46,872 Found link https://files.pythonhosted.org/packages/c7/f5/3bf951652d5c87786f9beaff1d317b5921102253fc953a04fcfe5c9a4814/onecodex-0.2.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.0 2026-05-13T18:35:46,873 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/86/1f/32868f6f79a482d60eca2d7bf5f9c7153fcbe72805a06aa27cbb3129b02c/onecodex-0.2.1-py2.7.egg (from https://pypi.org/simple/onecodex/) 2026-05-13T18:35:46,873 Found link https://files.pythonhosted.org/packages/47/cb/7909f3d58e4b850862d08c0a468b7eba0d634697b79d54d7c7fce683a4f6/onecodex-0.2.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.1 2026-05-13T18:35:46,874 Found link https://files.pythonhosted.org/packages/10/b1/e66762a2c9e67a0322bbcc96bb413f45749be315163392b79d3060e81649/onecodex-0.2.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.2 2026-05-13T18:35:46,875 Found link https://files.pythonhosted.org/packages/cf/0a/10be06247079528cdcfc25c01e6e6496be3c356f8e6ef3ddccb1c1b7816c/onecodex-0.2.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.3 2026-05-13T18:35:46,875 Found link https://files.pythonhosted.org/packages/82/32/595064f841cc9ea0ce6b2eebb4c1dfb18b081cc3e3550cebed1ef5fd5850/onecodex-0.2.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.4 2026-05-13T18:35:46,876 Found link https://files.pythonhosted.org/packages/3c/26/973ef4701d164d71900cfd4a11e3c85056a33af94b2a61a0906083098eb7/onecodex-0.2.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.5 2026-05-13T18:35:46,877 Found link https://files.pythonhosted.org/packages/6e/ae/8453a17f82c65f6c61f8178f81a557ee0dfb94cb525346d1594d65592b61/onecodex-0.2.6.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.6 2026-05-13T18:35:46,877 Found link https://files.pythonhosted.org/packages/5f/cb/d273e336e3cd507a551d9288f00f35fa0d6e82a01d932b820b00c63edf43/onecodex-0.2.7.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.7 2026-05-13T18:35:46,878 Found link https://files.pythonhosted.org/packages/bc/d9/34a3fdda441840eabcabe73cd8656db8d4ea5f4d1e1b77c88577a9910b1a/onecodex-0.2.8.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.8 2026-05-13T18:35:46,879 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/f8/2c0dd006c8e65dcdb9dd5b3d34c38ed2d7bbc283debc760b0197ad5a2e9b/onecodex-0.2.9-py3.6.egg (from https://pypi.org/simple/onecodex/) 2026-05-13T18:35:46,879 Found link https://files.pythonhosted.org/packages/af/c2/c27f749fbe7ff040cbabf6921448a1f57e0687b6f8cab9b265bae0803030/onecodex-0.2.9.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.9 2026-05-13T18:35:46,880 Found link https://files.pythonhosted.org/packages/09/d9/e71331423eaf002ea99b1f4e7a61b167f6f8f4091e591c567f13c4df878a/onecodex-0.2.10.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.10 2026-05-13T18:35:46,881 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8e/66/675d1c7ac150dda99fd9dd10f6e037aa3e71260a707505135c929120c818/onecodex-0.2.11-py2.7.egg (from https://pypi.org/simple/onecodex/) 2026-05-13T18:35:46,881 Found link https://files.pythonhosted.org/packages/61/3d/3bfc5c37fa0daddb13725a2cbc69418e0303a7af8a81ccc8d65ebc03713b/onecodex-0.2.11.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.11 2026-05-13T18:35:46,882 Found link https://files.pythonhosted.org/packages/84/97/d065263086b24cb4b74c104fd5c07384922cc81a32615ada074895088912/onecodex-0.2.12.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.12 2026-05-13T18:35:46,882 Found link https://files.pythonhosted.org/packages/95/1f/08fe44513e1d7015a9bda132762df927c1831b245de56b7a0a7447bd06b1/onecodex-0.2.13.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.13 2026-05-13T18:35:46,883 Found link https://files.pythonhosted.org/packages/89/72/8cf2d2a53515ae790ed8c304cf44c5c9376afa6f355f905301b51a045968/onecodex-0.2.14.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.14 2026-05-13T18:35:46,884 Found link https://files.pythonhosted.org/packages/d2/33/01ef57f7b9532ca79565e1fad4cffff2ea96847facf7cd09121aa0c9780c/onecodex-0.3.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.3.0 2026-05-13T18:35:46,884 Found link https://files.pythonhosted.org/packages/92/f1/20a29b09336a443c540d7fb710c9a9a77a860bbf4489407f306bc44e6d7a/onecodex-0.3.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.3.1 2026-05-13T18:35:46,885 Found link https://files.pythonhosted.org/packages/a1/94/aaf2d1c459b2a95645bde3466b9df0320f8a5190c05f808e5096948e3889/onecodex-0.4.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.0 2026-05-13T18:35:46,886 Found link https://files.pythonhosted.org/packages/00/51/9370127517278c891b95881cda1d25569a2942a007e6111534c544d7251d/onecodex-0.4.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.1 2026-05-13T18:35:46,886 Found link https://files.pythonhosted.org/packages/e3/5f/338c31066f5ff9145adc40c6e7bad1c61e2af1c7f6f19f9b1a10fb09cb79/onecodex-0.4.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.2 2026-05-13T18:35:46,887 Found link https://files.pythonhosted.org/packages/19/13/577ee6148607a6ba5182169dbc5b93b40afc470a86a27c9c6c01dbe5ef84/onecodex-0.4.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.3 2026-05-13T18:35:46,888 Found link https://files.pythonhosted.org/packages/3d/38/db4d7a8cbbd891818bc6da3ba3b65746d763038ec29bfd168f5696aea018/onecodex-0.4.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.4 2026-05-13T18:35:46,888 Found link https://files.pythonhosted.org/packages/c0/05/1c8e3be543c28d8f5a79bfd332dcc80a95b083bd478fede3aa692fc5fb5c/onecodex-0.4.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.5 2026-05-13T18:35:46,889 Found link https://files.pythonhosted.org/packages/f8/98/b7480b33c672eb2f3c76644bcdf3103e6bd9dd9838c78b90adc2f6ef23f0/onecodex-0.5.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.0 2026-05-13T18:35:46,890 Found link https://files.pythonhosted.org/packages/27/0f/00cd3191b24344b22e174a4ce6a83ff36724ee806f9a174b792894d22c0b/onecodex-0.5.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.1 2026-05-13T18:35:46,890 Found link https://files.pythonhosted.org/packages/b2/81/ba8a98fa23e6ff5b9bee3a3965c49b827b4d1bad121e526b578499a000ae/onecodex-0.5.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.2 2026-05-13T18:35:46,891 Found link https://files.pythonhosted.org/packages/71/64/a908ab8fb4f39fe08d249f73d8dcfca710824aaa2c79058416a8f92a8554/onecodex-0.5.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.3 2026-05-13T18:35:46,892 Found link https://files.pythonhosted.org/packages/dd/75/60f85d3266a152ce513376faed28d4cd16861497f08080289ba85e0c75cf/onecodex-0.5.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.4 2026-05-13T18:35:46,893 Found link https://files.pythonhosted.org/packages/99/7d/b7e0644d4b3de635c38a8c9ef7907fc16e46133c0203d0d7fc9cff65dc7a/onecodex-0.5.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.5 2026-05-13T18:35:46,893 Found link https://files.pythonhosted.org/packages/2a/07/28f7f541fc66fe7e38da719f6a3e46aec7d398762c2a6e952a2fba8ada37/onecodex-0.5.6.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.6 2026-05-13T18:35:46,894 Found link https://files.pythonhosted.org/packages/df/d0/16758202d45deaee8e6874a217057e1db1fbf41740d2ed157807f8ae6bb8/onecodex-0.6.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.6.0 2026-05-13T18:35:46,894 Found link https://files.pythonhosted.org/packages/f3/f0/a65f4cbdef19090b725d64a1c05d194f0689fd6bc411f85a277b65d69ae3/onecodex-0.6.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.6.1 2026-05-13T18:35:46,895 Found link 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https://files.pythonhosted.org/packages/f0/ca/37e17d697175c93b6669f6eb783e5a49978abfe64b8ef923b5fe0fb4309a/onecodex-0.7.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.7.0 2026-05-13T18:35:46,898 Found link https://files.pythonhosted.org/packages/a2/8e/3d26edbef0aea6014df4e911713df25e32b742c3e3423b77fc845a54cf7c/onecodex-0.7.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.7.1 2026-05-13T18:35:46,899 Found link https://files.pythonhosted.org/packages/99/58/2bb966c49d731cabfde0889d7de9d9bd3b9d64b700f9aa7a697e2a12eb83/onecodex-0.7.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.7.2 2026-05-13T18:35:46,899 Found link https://files.pythonhosted.org/packages/fd/bf/97dc6445a5a33628fe2d2b22169c0fa5755fba3584861605b135ccb45f19/onecodex-0.8.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.8.0 2026-05-13T18:35:46,900 Found link 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https://archive1.piwheels.org/simple/onecodex/onecodex-0.0.10-py3-none-any.whl#sha256=3c588ad79ddaa3b3689e00666115966e3abe5a0faae193a4c4c051641102054c (from https://www.piwheels.org/simple/onecodex/) 2026-05-13T18:35:47,179 Skipping link: No binaries permitted for onecodex: https://archive1.piwheels.org/simple/onecodex/onecodex-0.0.9-py3-none-any.whl#sha256=df9afbbee3491ea1ba5eb90244c50309e5058088ead9105e0acbdd2c3b4917f5 (from https://www.piwheels.org/simple/onecodex/) 2026-05-13T18:35:47,180 Skipping link: No binaries permitted for onecodex: https://archive1.piwheels.org/simple/onecodex/onecodex-0.0.8-py3-none-any.whl#sha256=c1bc88dda1981a1476ae6558cf455a8e308fbab8168b16239388009dcd06e6a1 (from https://www.piwheels.org/simple/onecodex/) 2026-05-13T18:35:47,180 Skipping link: No binaries permitted for onecodex: https://archive1.piwheels.org/simple/onecodex/onecodex-0.0.7-py3-none-any.whl#sha256=8c5e7a212a9ed47ef1418e85e44b1047924cbcd98994ec1bfbcd7d4b5a970325 (from 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https://archive1.piwheels.org/simple/onecodex/onecodex-0.0.3-py3-none-any.whl#sha256=35d1c8f55d863ea52c2f4d8502fba878935bdbf4d9306125360bdb162825d0b2 (from https://www.piwheels.org/simple/onecodex/) 2026-05-13T18:35:47,183 Skipping link: No binaries permitted for onecodex: https://archive1.piwheels.org/simple/onecodex/onecodex-0.0.2-py3-none-any.whl#sha256=102d00ec2a9f00c31707d28af90e29c7201a4f30629f1351c8869fcece7722b0 (from https://www.piwheels.org/simple/onecodex/) 2026-05-13T18:35:47,183 Skipping link: No binaries permitted for onecodex: https://archive1.piwheels.org/simple/onecodex/onecodex-0.0.1-py3-none-any.whl#sha256=423f37b70e44b0fbe7c0fff4618b95baf46f9bf3c8f9e746592e74f6f138f885 (from https://www.piwheels.org/simple/onecodex/) 2026-05-13T18:35:47,184 Skipping link: not a file: https://www.piwheels.org/simple/onecodex/ 2026-05-13T18:35:47,184 Skipping link: not a file: https://pypi.org/simple/onecodex/ 2026-05-13T18:35:47,214 Given no hashes to check 1 links for project 'onecodex': discarding no candidates 2026-05-13T18:35:47,232 Collecting onecodex==1.0.2 2026-05-13T18:35:47,235 Created temporary directory: /tmp/pip-unpack-ts0l8uo_ 2026-05-13T18:35:47,401 Downloading onecodex-1.0.2.tar.gz (3.9 MB) 2026-05-13T18:35:48,468 Added onecodex==1.0.2 from https://files.pythonhosted.org/packages/30/2a/6693c76ed676caa5542bbadaa21249a973ac97260fa15c904b70ee59af6b/onecodex-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-tlvzk849' 2026-05-13T18:35:48,475 Created temporary directory: /tmp/pip-build-env-h142j9nc 2026-05-13T18:35:48,480 Installing build dependencies: started 2026-05-13T18:35:48,481 Running command pip subprocess to install build dependencies 2026-05-13T18:35:49,616 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-13T18:35:50,079 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-13T18:35:50,102 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-13T18:35:51,911 Collecting setuptools>=61.0 2026-05-13T18:35:51,912 Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-13T18:35:51,927 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-13T18:35:52,273 Collecting setuptools-scm 2026-05-13T18:35:52,274 Obtaining dependency information for setuptools-scm from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata 2026-05-13T18:35:52,290 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB) 2026-05-13T18:35:52,385 Collecting vcs-versioning>=1.0.0.dev0 2026-05-13T18:35:52,386 Obtaining dependency information for vcs-versioning>=1.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata 2026-05-13T18:35:52,399 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata (1.6 kB) 2026-05-13T18:35:52,581 Collecting packaging>=20 2026-05-13T18:35:52,582 Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-13T18:35:52,596 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-13T18:35:52,799 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-13T18:35:52,861 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-13T18:35:52,881 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-13T18:35:52,969 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-13T18:35:53,003 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-13T18:35:53,028 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-13T18:35:53,056 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-13T18:35:53,152 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-13T18:35:55,974 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-05-13T18:36:00,216 Creating /tmp/pip-build-env-h142j9nc/overlay/local/bin 2026-05-13T18:36:00,219 changing mode of /tmp/pip-build-env-h142j9nc/overlay/local/bin/vcs-versioning to 755 2026-05-13T18:36:00,331 changing mode of /tmp/pip-build-env-h142j9nc/overlay/local/bin/setuptools-scm to 755 2026-05-13T18:36:00,358 Successfully installed packaging-26.2 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-05-13T18:36:00,649 Installing build dependencies: finished with status 'done' 2026-05-13T18:36:00,656 Getting requirements to build wheel: started 2026-05-13T18:36:00,657 Running command Getting requirements to build wheel 2026-05-13T18:36:01,340 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-05-13T18:36:01,442 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-13T18:36:01,443 !! 2026-05-13T18:36:01,444 ******************************************************************************** 2026-05-13T18:36:01,444 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-13T18:36:01,445 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-13T18:36:01,446 or your builds will no longer be supported. 2026-05-13T18:36:01,447 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T18:36:01,448 ******************************************************************************** 2026-05-13T18:36:01,449 !! 2026-05-13T18:36:01,450 corresp(dist, value, root_dir) 2026-05-13T18:36:01,530 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T18:36:01,531 !! 2026-05-13T18:36:01,532 ******************************************************************************** 2026-05-13T18:36:01,532 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T18:36:01,533 License :: OSI Approved :: MIT License 2026-05-13T18:36:01,534 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T18:36:01,535 ******************************************************************************** 2026-05-13T18:36:01,536 !! 2026-05-13T18:36:01,536 dist._finalize_license_expression() 2026-05-13T18:36:01,537 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T18:36:01,537 !! 2026-05-13T18:36:01,538 ******************************************************************************** 2026-05-13T18:36:01,539 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T18:36:01,540 License :: OSI Approved :: MIT License 2026-05-13T18:36:01,541 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T18:36:01,541 ******************************************************************************** 2026-05-13T18:36:01,543 !! 2026-05-13T18:36:01,543 self._finalize_license_expression() 2026-05-13T18:36:01,545 running egg_info 2026-05-13T18:36:01,552 writing onecodex.egg-info/PKG-INFO 2026-05-13T18:36:01,561 writing dependency_links to onecodex.egg-info/dependency_links.txt 2026-05-13T18:36:01,563 writing entry points to onecodex.egg-info/entry_points.txt 2026-05-13T18:36:01,568 writing requirements to onecodex.egg-info/requires.txt 2026-05-13T18:36:01,570 writing top-level names to onecodex.egg-info/top_level.txt 2026-05-13T18:36:01,621 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-13T18:36:01,621 return get_active_overrides().subprocess_timeout 2026-05-13T18:36:01,629 listing git files failed - pretending there aren't any 2026-05-13T18:36:01,639 reading manifest file 'onecodex.egg-info/SOURCES.txt' 2026-05-13T18:36:01,652 reading manifest template 'MANIFEST.in' 2026-05-13T18:36:01,655 warning: no files found matching 'pytest.ini' 2026-05-13T18:36:01,655 warning: no directories found matching 'licenses' 2026-05-13T18:36:01,656 adding license file 'LICENSE' 2026-05-13T18:36:01,665 writing manifest file 'onecodex.egg-info/SOURCES.txt' 2026-05-13T18:36:01,771 Getting requirements to build wheel: finished with status 'done' 2026-05-13T18:36:01,774 Created temporary directory: /tmp/pip-modern-metadata-uku6wt7t 2026-05-13T18:36:01,777 Preparing metadata (pyproject.toml): started 2026-05-13T18:36:01,778 Running command Preparing metadata (pyproject.toml) 2026-05-13T18:36:02,383 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-05-13T18:36:02,449 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-13T18:36:02,449 !! 2026-05-13T18:36:02,450 ******************************************************************************** 2026-05-13T18:36:02,451 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-13T18:36:02,452 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-13T18:36:02,452 or your builds will no longer be supported. 2026-05-13T18:36:02,453 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T18:36:02,453 ******************************************************************************** 2026-05-13T18:36:02,454 !! 2026-05-13T18:36:02,455 corresp(dist, value, root_dir) 2026-05-13T18:36:02,522 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T18:36:02,523 !! 2026-05-13T18:36:02,524 ******************************************************************************** 2026-05-13T18:36:02,524 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T18:36:02,525 License :: OSI Approved :: MIT License 2026-05-13T18:36:02,526 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T18:36:02,527 ******************************************************************************** 2026-05-13T18:36:02,528 !! 2026-05-13T18:36:02,528 dist._finalize_license_expression() 2026-05-13T18:36:02,529 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T18:36:02,530 !! 2026-05-13T18:36:02,531 ******************************************************************************** 2026-05-13T18:36:02,531 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T18:36:02,532 License :: OSI Approved :: MIT License 2026-05-13T18:36:02,533 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T18:36:02,534 ******************************************************************************** 2026-05-13T18:36:02,535 !! 2026-05-13T18:36:02,536 self._finalize_license_expression() 2026-05-13T18:36:02,538 running dist_info 2026-05-13T18:36:02,552 creating /tmp/pip-modern-metadata-uku6wt7t/onecodex.egg-info 2026-05-13T18:36:02,553 writing /tmp/pip-modern-metadata-uku6wt7t/onecodex.egg-info/PKG-INFO 2026-05-13T18:36:02,562 writing dependency_links to /tmp/pip-modern-metadata-uku6wt7t/onecodex.egg-info/dependency_links.txt 2026-05-13T18:36:02,564 writing entry points to /tmp/pip-modern-metadata-uku6wt7t/onecodex.egg-info/entry_points.txt 2026-05-13T18:36:02,568 writing requirements to /tmp/pip-modern-metadata-uku6wt7t/onecodex.egg-info/requires.txt 2026-05-13T18:36:02,569 writing top-level names to /tmp/pip-modern-metadata-uku6wt7t/onecodex.egg-info/top_level.txt 2026-05-13T18:36:02,571 writing manifest file '/tmp/pip-modern-metadata-uku6wt7t/onecodex.egg-info/SOURCES.txt' 2026-05-13T18:36:02,616 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-13T18:36:02,617 return get_active_overrides().subprocess_timeout 2026-05-13T18:36:02,623 listing git files failed - pretending there aren't any 2026-05-13T18:36:02,631 reading manifest file '/tmp/pip-modern-metadata-uku6wt7t/onecodex.egg-info/SOURCES.txt' 2026-05-13T18:36:02,632 reading manifest template 'MANIFEST.in' 2026-05-13T18:36:02,635 warning: no files found matching 'pytest.ini' 2026-05-13T18:36:02,635 warning: no directories found matching 'licenses' 2026-05-13T18:36:02,636 adding license file 'LICENSE' 2026-05-13T18:36:02,641 writing manifest file '/tmp/pip-modern-metadata-uku6wt7t/onecodex.egg-info/SOURCES.txt' 2026-05-13T18:36:02,642 creating '/tmp/pip-modern-metadata-uku6wt7t/onecodex-1.0.2.dist-info' 2026-05-13T18:36:02,776 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-13T18:36:02,781 Source in /tmp/pip-wheel-q3izvgl8/onecodex_b5a3c17e90dc42ed847688ef6436bd83 has version 1.0.2, which satisfies requirement onecodex==1.0.2 from https://files.pythonhosted.org/packages/30/2a/6693c76ed676caa5542bbadaa21249a973ac97260fa15c904b70ee59af6b/onecodex-1.0.2.tar.gz 2026-05-13T18:36:02,782 Removed onecodex==1.0.2 from https://files.pythonhosted.org/packages/30/2a/6693c76ed676caa5542bbadaa21249a973ac97260fa15c904b70ee59af6b/onecodex-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-tlvzk849' 2026-05-13T18:36:02,789 Created temporary directory: /tmp/pip-unpack-37uabnl7 2026-05-13T18:36:02,790 Building wheels for collected packages: onecodex 2026-05-13T18:36:02,794 Created temporary directory: /tmp/pip-wheel-rm4b1l5k 2026-05-13T18:36:02,795 Destination directory: /tmp/pip-wheel-rm4b1l5k 2026-05-13T18:36:02,797 Building wheel for onecodex (pyproject.toml): started 2026-05-13T18:36:02,801 Running command Building wheel for onecodex (pyproject.toml) 2026-05-13T18:36:03,385 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-05-13T18:36:03,449 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-13T18:36:03,450 !! 2026-05-13T18:36:03,451 ******************************************************************************** 2026-05-13T18:36:03,452 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-13T18:36:03,453 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-13T18:36:03,453 or your builds will no longer be supported. 2026-05-13T18:36:03,454 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T18:36:03,455 ******************************************************************************** 2026-05-13T18:36:03,456 !! 2026-05-13T18:36:03,457 corresp(dist, value, root_dir) 2026-05-13T18:36:03,519 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T18:36:03,519 !! 2026-05-13T18:36:03,520 ******************************************************************************** 2026-05-13T18:36:03,521 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T18:36:03,522 License :: OSI Approved :: MIT License 2026-05-13T18:36:03,522 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T18:36:03,523 ******************************************************************************** 2026-05-13T18:36:03,524 !! 2026-05-13T18:36:03,524 dist._finalize_license_expression() 2026-05-13T18:36:03,526 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T18:36:03,526 !! 2026-05-13T18:36:03,527 ******************************************************************************** 2026-05-13T18:36:03,528 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T18:36:03,529 License :: OSI Approved :: MIT License 2026-05-13T18:36:03,530 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T18:36:03,530 ******************************************************************************** 2026-05-13T18:36:03,531 !! 2026-05-13T18:36:03,532 self._finalize_license_expression() 2026-05-13T18:36:03,532 running bdist_wheel 2026-05-13T18:36:03,553 running build 2026-05-13T18:36:03,554 running build_py 2026-05-13T18:36:03,556 creating build/lib/docs 2026-05-13T18:36:03,558 copying docs/conf.py -> build/lib/docs 2026-05-13T18:36:03,561 creating build/lib/onecodex 2026-05-13T18:36:03,562 copying onecodex/stats.py -> build/lib/onecodex 2026-05-13T18:36:03,566 copying onecodex/cli.py -> build/lib/onecodex 2026-05-13T18:36:03,568 copying onecodex/exceptions.py -> build/lib/onecodex 2026-05-13T18:36:03,570 copying onecodex/distance.py -> build/lib/onecodex 2026-05-13T18:36:03,573 copying onecodex/taxonomy.py -> build/lib/onecodex 2026-05-13T18:36:03,575 copying onecodex/api.py -> build/lib/onecodex 2026-05-13T18:36:03,577 copying onecodex/version.py -> build/lib/onecodex 2026-05-13T18:36:03,579 copying onecodex/__init__.py -> build/lib/onecodex 2026-05-13T18:36:03,581 copying onecodex/input_helpers.py -> build/lib/onecodex 2026-05-13T18:36:03,583 copying onecodex/auth.py -> build/lib/onecodex 2026-05-13T18:36:03,585 copying onecodex/dataframes.py -> build/lib/onecodex 2026-05-13T18:36:03,588 copying onecodex/metadata_upload.py -> build/lib/onecodex 2026-05-13T18:36:03,590 copying onecodex/utils.py -> build/lib/onecodex 2026-05-13T18:36:03,594 creating build/lib/onecodex/viz 2026-05-13T18:36:03,595 copying onecodex/viz/_heatmap.py -> build/lib/onecodex/viz 2026-05-13T18:36:03,597 copying onecodex/viz/_bargraph.py -> build/lib/onecodex/viz 2026-05-13T18:36:03,600 copying onecodex/viz/_distance.py -> build/lib/onecodex/viz 2026-05-13T18:36:03,603 copying onecodex/viz/_pca.py -> build/lib/onecodex/viz 2026-05-13T18:36:03,605 copying onecodex/viz/_metadata.py -> build/lib/onecodex/viz 2026-05-13T18:36:03,608 copying onecodex/viz/__init__.py -> build/lib/onecodex/viz 2026-05-13T18:36:03,611 copying onecodex/viz/_primitives.py -> build/lib/onecodex/viz 2026-05-13T18:36:03,613 copying onecodex/viz/_functional.py -> build/lib/onecodex/viz 2026-05-13T18:36:03,616 creating build/lib/onecodex/scripts 2026-05-13T18:36:03,618 copying onecodex/scripts/export_functional_metric.py -> build/lib/onecodex/scripts 2026-05-13T18:36:03,621 copying onecodex/scripts/__init__.py -> build/lib/onecodex/scripts 2026-05-13T18:36:03,622 copying onecodex/scripts/interleave.py -> build/lib/onecodex/scripts 2026-05-13T18:36:03,624 copying onecodex/scripts/subset_reads.py -> build/lib/onecodex/scripts 2026-05-13T18:36:03,627 creating build/lib/onecodex/notebooks 2026-05-13T18:36:03,628 copying onecodex/notebooks/__init__.py -> build/lib/onecodex/notebooks 2026-05-13T18:36:03,630 copying onecodex/notebooks/exporters.py -> build/lib/onecodex/notebooks 2026-05-13T18:36:03,633 copying onecodex/notebooks/report.py -> build/lib/onecodex/notebooks 2026-05-13T18:36:03,636 creating build/lib/onecodex/models 2026-05-13T18:36:03,637 copying onecodex/models/genome.py -> build/lib/onecodex/models 2026-05-13T18:36:03,640 copying onecodex/models/base_sample_collection.py -> build/lib/onecodex/models 2026-05-13T18:36:03,644 copying onecodex/models/helpers.py -> build/lib/onecodex/models 2026-05-13T18:36:03,647 copying onecodex/models/base.py -> build/lib/onecodex/models 2026-05-13T18:36:03,649 copying onecodex/models/collection.py -> build/lib/onecodex/models 2026-05-13T18:36:03,651 copying onecodex/models/misc.py -> build/lib/onecodex/models 2026-05-13T18:36:03,653 copying onecodex/models/__init__.py -> build/lib/onecodex/models 2026-05-13T18:36:03,656 copying onecodex/models/analysis.py -> build/lib/onecodex/models 2026-05-13T18:36:03,658 copying onecodex/models/sample.py -> build/lib/onecodex/models 2026-05-13T18:36:03,661 creating build/lib/onecodex/lib 2026-05-13T18:36:03,663 copying onecodex/lib/download.py -> build/lib/onecodex/lib 2026-05-13T18:36:03,665 copying onecodex/lib/helpers.py -> build/lib/onecodex/lib 2026-05-13T18:36:03,667 copying onecodex/lib/files.py -> build/lib/onecodex/lib 2026-05-13T18:36:03,669 copying onecodex/lib/__init__.py -> build/lib/onecodex/lib 2026-05-13T18:36:03,671 copying onecodex/lib/enums.py -> build/lib/onecodex/lib 2026-05-13T18:36:03,673 copying onecodex/lib/auth.py -> build/lib/onecodex/lib 2026-05-13T18:36:03,676 copying onecodex/lib/upload.py -> build/lib/onecodex/lib 2026-05-13T18:36:03,679 creating build/lib/onecodex/viz/_custom_plots 2026-05-13T18:36:03,680 copying onecodex/viz/_custom_plots/export.py -> build/lib/onecodex/viz/_custom_plots 2026-05-13T18:36:03,683 copying onecodex/viz/_custom_plots/metadata.py -> build/lib/onecodex/viz/_custom_plots 2026-05-13T18:36:03,685 copying onecodex/viz/_custom_plots/collection.py -> build/lib/onecodex/viz/_custom_plots 2026-05-13T18:36:03,688 copying onecodex/viz/_custom_plots/models.py -> build/lib/onecodex/viz/_custom_plots 2026-05-13T18:36:03,690 copying onecodex/viz/_custom_plots/__init__.py -> build/lib/onecodex/viz/_custom_plots 2026-05-13T18:36:03,693 copying onecodex/viz/_custom_plots/enums.py -> build/lib/onecodex/viz/_custom_plots 2026-05-13T18:36:03,695 copying onecodex/viz/_custom_plots/utils.py -> build/lib/onecodex/viz/_custom_plots 2026-05-13T18:36:03,698 creating build/lib/onecodex/models/schemas 2026-05-13T18:36:03,699 copying onecodex/models/schemas/genome.py -> build/lib/onecodex/models/schemas 2026-05-13T18:36:03,701 copying onecodex/models/schemas/base.py -> build/lib/onecodex/models/schemas 2026-05-13T18:36:03,703 copying onecodex/models/schemas/misc.py -> build/lib/onecodex/models/schemas 2026-05-13T18:36:03,706 copying onecodex/models/schemas/__init__.py -> build/lib/onecodex/models/schemas 2026-05-13T18:36:03,708 copying onecodex/models/schemas/analysis.py -> build/lib/onecodex/models/schemas 2026-05-13T18:36:03,710 copying onecodex/models/schemas/types.py -> build/lib/onecodex/models/schemas 2026-05-13T18:36:03,712 copying onecodex/models/schemas/sample.py -> build/lib/onecodex/models/schemas 2026-05-13T18:36:03,714 running egg_info 2026-05-13T18:36:03,728 writing onecodex.egg-info/PKG-INFO 2026-05-13T18:36:03,736 writing dependency_links to onecodex.egg-info/dependency_links.txt 2026-05-13T18:36:03,737 writing entry points to onecodex.egg-info/entry_points.txt 2026-05-13T18:36:03,742 writing requirements to onecodex.egg-info/requires.txt 2026-05-13T18:36:03,743 writing top-level names to onecodex.egg-info/top_level.txt 2026-05-13T18:36:03,781 /tmp/pip-build-env-h142j9nc/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-13T18:36:03,782 return get_active_overrides().subprocess_timeout 2026-05-13T18:36:03,788 listing git files failed - pretending there aren't any 2026-05-13T18:36:03,796 reading manifest file 'onecodex.egg-info/SOURCES.txt' 2026-05-13T18:36:03,808 reading manifest template 'MANIFEST.in' 2026-05-13T18:36:03,810 warning: no files found matching 'pytest.ini' 2026-05-13T18:36:03,811 warning: no directories found matching 'licenses' 2026-05-13T18:36:03,811 adding license file 'LICENSE' 2026-05-13T18:36:03,820 writing manifest file 'onecodex.egg-info/SOURCES.txt' 2026-05-13T18:36:03,834 copying docs/.gitignore -> build/lib/docs 2026-05-13T18:36:03,837 copying docs/Makefile -> build/lib/docs 2026-05-13T18:36:03,839 copying docs/enums.rst -> build/lib/docs 2026-05-13T18:36:03,841 copying docs/index.rst -> build/lib/docs 2026-05-13T18:36:03,844 copying docs/models.rst -> build/lib/docs 2026-05-13T18:36:03,846 copying docs/notebooks.rst -> build/lib/docs 2026-05-13T18:36:03,848 copying docs/readme.md -> build/lib/docs 2026-05-13T18:36:03,850 copying docs/requirements.txt -> build/lib/docs 2026-05-13T18:36:03,853 copying docs/sample_collection.rst -> build/lib/docs 2026-05-13T18:36:03,855 copying docs/statistics.rst -> build/lib/docs 2026-05-13T18:36:03,857 copying docs/taxonomy.rst -> build/lib/docs 2026-05-13T18:36:03,859 copying docs/visualization.rst -> build/lib/docs 2026-05-13T18:36:03,862 creating build/lib/notebook_examples 2026-05-13T18:36:03,863 copying notebook_examples/example.ipynb -> build/lib/notebook_examples 2026-05-13T18:36:03,865 copying notebook_examples/notebooks_demo.ipynb -> build/lib/notebook_examples 2026-05-13T18:36:03,868 creating build/lib/docs/notebook_examples 2026-05-13T18:36:03,869 copying docs/notebook_examples/notebooks_demo.ipynb -> build/lib/docs/notebook_examples 2026-05-13T18:36:03,872 creating build/lib/docs/_static 2026-05-13T18:36:03,873 copying docs/_static/one_codex_logo.png -> build/lib/docs/_static 2026-05-13T18:36:03,877 creating build/lib/onecodex/assets 2026-05-13T18:36:03,878 copying onecodex/assets/notebook_template.css -> build/lib/onecodex/assets 2026-05-13T18:36:03,881 copying onecodex/assets/notebook_template.scss -> build/lib/onecodex/assets 2026-05-13T18:36:03,883 copying onecodex/assets/notebook_template.tpl -> build/lib/onecodex/assets 2026-05-13T18:36:03,885 copying onecodex/assets/one_codex_logo.png -> build/lib/onecodex/assets 2026-05-13T18:36:03,888 creating build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,889 copying onecodex/assets/fonts/FiraSans-Light.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,897 copying onecodex/assets/fonts/FiraSans-Light.woff2 -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,902 copying onecodex/assets/fonts/FiraSans-LightItalic.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,910 copying onecodex/assets/fonts/FiraSans-LightItalic.woff2 -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,915 copying onecodex/assets/fonts/FiraSans-Medium.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,925 copying onecodex/assets/fonts/FiraSans-Medium.woff2 -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,970 copying onecodex/assets/fonts/FiraSans-MediumItalic.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,977 copying onecodex/assets/fonts/FiraSans-MediumItalic.woff2 -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,985 copying onecodex/assets/fonts/FiraSans-Regular.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,992 copying onecodex/assets/fonts/FiraSans-Regular.woff2 -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:03,996 copying onecodex/assets/fonts/FiraSans-RegularItalic.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:04,003 copying onecodex/assets/fonts/FiraSans-RegularItalic.woff2 -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:04,008 copying onecodex/assets/fonts/FiraSans-SemiBold.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:04,015 copying onecodex/assets/fonts/FiraSans-SemiBold.woff2 -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:04,020 copying onecodex/assets/fonts/FiraSans-SemiBoldItalic.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:04,028 copying onecodex/assets/fonts/FiraSans-SemiBoldItalic.woff2 -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:04,033 copying onecodex/assets/fonts/FiraSansCondensed-Regular.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:04,038 copying onecodex/assets/fonts/FiraSansCondensed-RegularItalic.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:04,042 copying onecodex/assets/fonts/FiraSansCondensed-SemiBold.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:04,046 copying onecodex/assets/fonts/FiraSansCondensed-SemiboldItalic.otf -> build/lib/onecodex/assets/fonts 2026-05-13T18:36:04,068 installing to build/bdist.linux-armv7l/wheel 2026-05-13T18:36:04,069 running install 2026-05-13T18:36:04,092 running install_lib 2026-05-13T18:36:04,099 creating build/bdist.linux-armv7l/wheel 2026-05-13T18:36:04,101 creating build/bdist.linux-armv7l/wheel/docs 2026-05-13T18:36:04,102 copying build/lib/docs/sample_collection.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,105 creating build/bdist.linux-armv7l/wheel/docs/notebook_examples 2026-05-13T18:36:04,106 copying build/lib/docs/notebook_examples/notebooks_demo.ipynb -> build/bdist.linux-armv7l/wheel/./docs/notebook_examples 2026-05-13T18:36:04,109 copying build/lib/docs/index.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,110 copying build/lib/docs/taxonomy.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,112 copying build/lib/docs/visualization.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,114 copying build/lib/docs/statistics.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,116 copying build/lib/docs/models.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,117 copying build/lib/docs/Makefile -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,119 copying build/lib/docs/enums.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,122 copying build/lib/docs/readme.md -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,123 copying build/lib/docs/.gitignore -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,126 creating build/bdist.linux-armv7l/wheel/docs/_static 2026-05-13T18:36:04,127 copying build/lib/docs/_static/one_codex_logo.png -> build/bdist.linux-armv7l/wheel/./docs/_static 2026-05-13T18:36:04,129 copying build/lib/docs/requirements.txt -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,131 copying build/lib/docs/notebooks.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,133 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/./docs 2026-05-13T18:36:04,135 creating build/bdist.linux-armv7l/wheel/notebook_examples 2026-05-13T18:36:04,136 copying build/lib/notebook_examples/example.ipynb -> build/bdist.linux-armv7l/wheel/./notebook_examples 2026-05-13T18:36:04,139 copying build/lib/notebook_examples/notebooks_demo.ipynb -> build/bdist.linux-armv7l/wheel/./notebook_examples 2026-05-13T18:36:04,142 creating build/bdist.linux-armv7l/wheel/onecodex 2026-05-13T18:36:04,143 copying build/lib/onecodex/stats.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,146 creating build/bdist.linux-armv7l/wheel/onecodex/viz 2026-05-13T18:36:04,148 copying build/lib/onecodex/viz/_heatmap.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-05-13T18:36:04,150 copying build/lib/onecodex/viz/_bargraph.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-05-13T18:36:04,153 creating build/bdist.linux-armv7l/wheel/onecodex/viz/_custom_plots 2026-05-13T18:36:04,154 copying build/lib/onecodex/viz/_custom_plots/export.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-05-13T18:36:04,156 copying build/lib/onecodex/viz/_custom_plots/metadata.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-05-13T18:36:04,158 copying build/lib/onecodex/viz/_custom_plots/collection.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-05-13T18:36:04,161 copying build/lib/onecodex/viz/_custom_plots/models.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-05-13T18:36:04,164 copying build/lib/onecodex/viz/_custom_plots/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-05-13T18:36:04,166 copying build/lib/onecodex/viz/_custom_plots/enums.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-05-13T18:36:04,167 copying build/lib/onecodex/viz/_custom_plots/utils.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-05-13T18:36:04,169 copying build/lib/onecodex/viz/_distance.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-05-13T18:36:04,172 copying build/lib/onecodex/viz/_pca.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-05-13T18:36:04,174 copying build/lib/onecodex/viz/_metadata.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-05-13T18:36:04,177 copying build/lib/onecodex/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-05-13T18:36:04,179 copying build/lib/onecodex/viz/_primitives.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-05-13T18:36:04,181 copying build/lib/onecodex/viz/_functional.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-05-13T18:36:04,183 copying build/lib/onecodex/cli.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,185 copying build/lib/onecodex/exceptions.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,187 copying build/lib/onecodex/distance.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,190 copying build/lib/onecodex/taxonomy.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,192 creating build/bdist.linux-armv7l/wheel/onecodex/assets 2026-05-13T18:36:04,193 copying build/lib/onecodex/assets/notebook_template.tpl -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2026-05-13T18:36:04,195 copying build/lib/onecodex/assets/notebook_template.scss -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2026-05-13T18:36:04,198 copying build/lib/onecodex/assets/notebook_template.css -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2026-05-13T18:36:04,200 creating build/bdist.linux-armv7l/wheel/onecodex/assets/fonts 2026-05-13T18:36:04,201 copying build/lib/onecodex/assets/fonts/FiraSans-RegularItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,208 copying build/lib/onecodex/assets/fonts/FiraSans-Light.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,212 copying build/lib/onecodex/assets/fonts/FiraSans-Medium.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,219 copying build/lib/onecodex/assets/fonts/FiraSans-LightItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,226 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-RegularItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,229 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-Regular.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,233 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBoldItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,240 copying build/lib/onecodex/assets/fonts/FiraSans-MediumItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,247 copying build/lib/onecodex/assets/fonts/FiraSans-Regular.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,251 copying build/lib/onecodex/assets/fonts/FiraSans-LightItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,255 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBoldItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,259 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBold.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,264 copying build/lib/onecodex/assets/fonts/FiraSans-Light.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,270 copying build/lib/onecodex/assets/fonts/FiraSans-RegularItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,274 copying build/lib/onecodex/assets/fonts/FiraSans-MediumItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,279 copying build/lib/onecodex/assets/fonts/FiraSans-Regular.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,287 copying build/lib/onecodex/assets/fonts/FiraSans-Medium.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,292 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-SemiBold.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,296 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBold.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,305 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-SemiboldItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-05-13T18:36:04,309 copying build/lib/onecodex/assets/one_codex_logo.png -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2026-05-13T18:36:04,312 creating build/bdist.linux-armv7l/wheel/onecodex/scripts 2026-05-13T18:36:04,313 copying build/lib/onecodex/scripts/export_functional_metric.py -> build/bdist.linux-armv7l/wheel/./onecodex/scripts 2026-05-13T18:36:04,315 copying build/lib/onecodex/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/scripts 2026-05-13T18:36:04,317 copying build/lib/onecodex/scripts/interleave.py -> build/bdist.linux-armv7l/wheel/./onecodex/scripts 2026-05-13T18:36:04,320 copying build/lib/onecodex/scripts/subset_reads.py -> build/bdist.linux-armv7l/wheel/./onecodex/scripts 2026-05-13T18:36:04,323 copying build/lib/onecodex/api.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,326 copying build/lib/onecodex/version.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,329 creating build/bdist.linux-armv7l/wheel/onecodex/notebooks 2026-05-13T18:36:04,330 copying build/lib/onecodex/notebooks/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/notebooks 2026-05-13T18:36:04,332 copying build/lib/onecodex/notebooks/exporters.py -> build/bdist.linux-armv7l/wheel/./onecodex/notebooks 2026-05-13T18:36:04,335 copying build/lib/onecodex/notebooks/report.py -> build/bdist.linux-armv7l/wheel/./onecodex/notebooks 2026-05-13T18:36:04,338 copying build/lib/onecodex/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,341 creating build/bdist.linux-armv7l/wheel/onecodex/models 2026-05-13T18:36:04,342 copying build/lib/onecodex/models/genome.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-05-13T18:36:04,345 copying build/lib/onecodex/models/base_sample_collection.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-05-13T18:36:04,349 copying build/lib/onecodex/models/helpers.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-05-13T18:36:04,352 copying build/lib/onecodex/models/base.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-05-13T18:36:04,355 copying build/lib/onecodex/models/collection.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-05-13T18:36:04,357 copying build/lib/onecodex/models/misc.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-05-13T18:36:04,360 copying build/lib/onecodex/models/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-05-13T18:36:04,362 copying build/lib/onecodex/models/analysis.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-05-13T18:36:04,365 copying build/lib/onecodex/models/sample.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-05-13T18:36:04,369 creating build/bdist.linux-armv7l/wheel/onecodex/models/schemas 2026-05-13T18:36:04,370 copying build/lib/onecodex/models/schemas/genome.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-05-13T18:36:04,372 copying build/lib/onecodex/models/schemas/base.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-05-13T18:36:04,375 copying build/lib/onecodex/models/schemas/misc.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-05-13T18:36:04,377 copying build/lib/onecodex/models/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-05-13T18:36:04,379 copying build/lib/onecodex/models/schemas/analysis.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-05-13T18:36:04,381 copying build/lib/onecodex/models/schemas/types.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-05-13T18:36:04,383 copying build/lib/onecodex/models/schemas/sample.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-05-13T18:36:04,386 copying build/lib/onecodex/input_helpers.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,389 copying build/lib/onecodex/auth.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,392 creating build/bdist.linux-armv7l/wheel/onecodex/lib 2026-05-13T18:36:04,393 copying build/lib/onecodex/lib/download.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-05-13T18:36:04,396 copying build/lib/onecodex/lib/helpers.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-05-13T18:36:04,398 copying build/lib/onecodex/lib/files.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-05-13T18:36:04,401 copying build/lib/onecodex/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-05-13T18:36:04,403 copying build/lib/onecodex/lib/enums.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-05-13T18:36:04,406 copying build/lib/onecodex/lib/auth.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-05-13T18:36:04,408 copying build/lib/onecodex/lib/upload.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-05-13T18:36:04,411 copying build/lib/onecodex/dataframes.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,414 copying build/lib/onecodex/metadata_upload.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,416 copying build/lib/onecodex/utils.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-05-13T18:36:04,420 running install_egg_info 2026-05-13T18:36:04,426 Copying onecodex.egg-info to build/bdist.linux-armv7l/wheel/./onecodex-1.0.2-py3.11.egg-info 2026-05-13T18:36:04,441 running install_scripts 2026-05-13T18:36:04,453 creating build/bdist.linux-armv7l/wheel/onecodex-1.0.2.dist-info/WHEEL 2026-05-13T18:36:04,456 creating '/tmp/pip-wheel-rm4b1l5k/.tmp-ztd_kbpe/onecodex-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-13T18:36:04,459 adding 'docs/.gitignore' 2026-05-13T18:36:04,461 adding 'docs/Makefile' 2026-05-13T18:36:04,463 adding 'docs/conf.py' 2026-05-13T18:36:04,464 adding 'docs/enums.rst' 2026-05-13T18:36:04,466 adding 'docs/index.rst' 2026-05-13T18:36:04,468 adding 'docs/models.rst' 2026-05-13T18:36:04,469 adding 'docs/notebooks.rst' 2026-05-13T18:36:04,471 adding 'docs/readme.md' 2026-05-13T18:36:04,472 adding 'docs/requirements.txt' 2026-05-13T18:36:04,474 adding 'docs/sample_collection.rst' 2026-05-13T18:36:04,475 adding 'docs/statistics.rst' 2026-05-13T18:36:04,477 adding 'docs/taxonomy.rst' 2026-05-13T18:36:04,479 adding 'docs/visualization.rst' 2026-05-13T18:36:04,483 adding 'docs/_static/one_codex_logo.png' 2026-05-13T18:36:04,486 adding 'docs/notebook_examples/notebooks_demo.ipynb' 2026-05-13T18:36:04,488 adding 'notebook_examples/example.ipynb' 2026-05-13T18:36:04,490 adding 'notebook_examples/notebooks_demo.ipynb' 2026-05-13T18:36:04,492 adding 'onecodex/__init__.py' 2026-05-13T18:36:04,494 adding 'onecodex/api.py' 2026-05-13T18:36:04,496 adding 'onecodex/auth.py' 2026-05-13T18:36:04,500 adding 'onecodex/cli.py' 2026-05-13T18:36:04,502 adding 'onecodex/dataframes.py' 2026-05-13T18:36:04,504 adding 'onecodex/distance.py' 2026-05-13T18:36:04,506 adding 'onecodex/exceptions.py' 2026-05-13T18:36:04,508 adding 'onecodex/input_helpers.py' 2026-05-13T18:36:04,510 adding 'onecodex/metadata_upload.py' 2026-05-13T18:36:04,515 adding 'onecodex/stats.py' 2026-05-13T18:36:04,517 adding 'onecodex/taxonomy.py' 2026-05-13T18:36:04,520 adding 'onecodex/utils.py' 2026-05-13T18:36:04,522 adding 'onecodex/version.py' 2026-05-13T18:36:04,524 adding 'onecodex/assets/notebook_template.css' 2026-05-13T18:36:04,526 adding 'onecodex/assets/notebook_template.scss' 2026-05-13T18:36:04,528 adding 'onecodex/assets/notebook_template.tpl' 2026-05-13T18:36:04,531 adding 'onecodex/assets/one_codex_logo.png' 2026-05-13T18:36:04,576 adding 'onecodex/assets/fonts/FiraSans-Light.otf' 2026-05-13T18:36:04,592 adding 'onecodex/assets/fonts/FiraSans-Light.woff2' 2026-05-13T18:36:04,637 adding 'onecodex/assets/fonts/FiraSans-LightItalic.otf' 2026-05-13T18:36:04,655 adding 'onecodex/assets/fonts/FiraSans-LightItalic.woff2' 2026-05-13T18:36:04,699 adding 'onecodex/assets/fonts/FiraSans-Medium.otf' 2026-05-13T18:36:04,716 adding 'onecodex/assets/fonts/FiraSans-Medium.woff2' 2026-05-13T18:36:04,763 adding 'onecodex/assets/fonts/FiraSans-MediumItalic.otf' 2026-05-13T18:36:04,780 adding 'onecodex/assets/fonts/FiraSans-MediumItalic.woff2' 2026-05-13T18:36:04,824 adding 'onecodex/assets/fonts/FiraSans-Regular.otf' 2026-05-13T18:36:04,840 adding 'onecodex/assets/fonts/FiraSans-Regular.woff2' 2026-05-13T18:36:04,884 adding 'onecodex/assets/fonts/FiraSans-RegularItalic.otf' 2026-05-13T18:36:04,901 adding 'onecodex/assets/fonts/FiraSans-RegularItalic.woff2' 2026-05-13T18:36:04,947 adding 'onecodex/assets/fonts/FiraSans-SemiBold.otf' 2026-05-13T18:36:04,964 adding 'onecodex/assets/fonts/FiraSans-SemiBold.woff2' 2026-05-13T18:36:05,011 adding 'onecodex/assets/fonts/FiraSans-SemiBoldItalic.otf' 2026-05-13T18:36:05,029 adding 'onecodex/assets/fonts/FiraSans-SemiBoldItalic.woff2' 2026-05-13T18:36:05,041 adding 'onecodex/assets/fonts/FiraSansCondensed-Regular.otf' 2026-05-13T18:36:05,053 adding 'onecodex/assets/fonts/FiraSansCondensed-RegularItalic.otf' 2026-05-13T18:36:05,064 adding 'onecodex/assets/fonts/FiraSansCondensed-SemiBold.otf' 2026-05-13T18:36:05,076 adding 'onecodex/assets/fonts/FiraSansCondensed-SemiboldItalic.otf' 2026-05-13T18:36:05,079 adding 'onecodex/lib/__init__.py' 2026-05-13T18:36:05,081 adding 'onecodex/lib/auth.py' 2026-05-13T18:36:05,083 adding 'onecodex/lib/download.py' 2026-05-13T18:36:05,085 adding 'onecodex/lib/enums.py' 2026-05-13T18:36:05,087 adding 'onecodex/lib/files.py' 2026-05-13T18:36:05,089 adding 'onecodex/lib/helpers.py' 2026-05-13T18:36:05,092 adding 'onecodex/lib/upload.py' 2026-05-13T18:36:05,094 adding 'onecodex/models/__init__.py' 2026-05-13T18:36:05,097 adding 'onecodex/models/analysis.py' 2026-05-13T18:36:05,100 adding 'onecodex/models/base.py' 2026-05-13T18:36:05,107 adding 'onecodex/models/base_sample_collection.py' 2026-05-13T18:36:05,109 adding 'onecodex/models/collection.py' 2026-05-13T18:36:05,111 adding 'onecodex/models/genome.py' 2026-05-13T18:36:05,113 adding 'onecodex/models/helpers.py' 2026-05-13T18:36:05,115 adding 'onecodex/models/misc.py' 2026-05-13T18:36:05,118 adding 'onecodex/models/sample.py' 2026-05-13T18:36:05,120 adding 'onecodex/models/schemas/__init__.py' 2026-05-13T18:36:05,122 adding 'onecodex/models/schemas/analysis.py' 2026-05-13T18:36:05,123 adding 'onecodex/models/schemas/base.py' 2026-05-13T18:36:05,125 adding 'onecodex/models/schemas/genome.py' 2026-05-13T18:36:05,127 adding 'onecodex/models/schemas/misc.py' 2026-05-13T18:36:05,128 adding 'onecodex/models/schemas/sample.py' 2026-05-13T18:36:05,130 adding 'onecodex/models/schemas/types.py' 2026-05-13T18:36:05,132 adding 'onecodex/notebooks/__init__.py' 2026-05-13T18:36:05,134 adding 'onecodex/notebooks/exporters.py' 2026-05-13T18:36:05,137 adding 'onecodex/notebooks/report.py' 2026-05-13T18:36:05,139 adding 'onecodex/scripts/__init__.py' 2026-05-13T18:36:05,141 adding 'onecodex/scripts/export_functional_metric.py' 2026-05-13T18:36:05,143 adding 'onecodex/scripts/interleave.py' 2026-05-13T18:36:05,146 adding 'onecodex/scripts/subset_reads.py' 2026-05-13T18:36:05,148 adding 'onecodex/viz/__init__.py' 2026-05-13T18:36:05,151 adding 'onecodex/viz/_bargraph.py' 2026-05-13T18:36:05,154 adding 'onecodex/viz/_distance.py' 2026-05-13T18:36:05,156 adding 'onecodex/viz/_functional.py' 2026-05-13T18:36:05,159 adding 'onecodex/viz/_heatmap.py' 2026-05-13T18:36:05,161 adding 'onecodex/viz/_metadata.py' 2026-05-13T18:36:05,164 adding 'onecodex/viz/_pca.py' 2026-05-13T18:36:05,166 adding 'onecodex/viz/_primitives.py' 2026-05-13T18:36:05,169 adding 'onecodex/viz/_custom_plots/__init__.py' 2026-05-13T18:36:05,172 adding 'onecodex/viz/_custom_plots/collection.py' 2026-05-13T18:36:05,174 adding 'onecodex/viz/_custom_plots/enums.py' 2026-05-13T18:36:05,175 adding 'onecodex/viz/_custom_plots/export.py' 2026-05-13T18:36:05,177 adding 'onecodex/viz/_custom_plots/metadata.py' 2026-05-13T18:36:05,179 adding 'onecodex/viz/_custom_plots/models.py' 2026-05-13T18:36:05,181 adding 'onecodex/viz/_custom_plots/utils.py' 2026-05-13T18:36:05,184 adding 'onecodex-1.0.2.dist-info/licenses/LICENSE' 2026-05-13T18:36:05,187 adding 'onecodex-1.0.2.dist-info/METADATA' 2026-05-13T18:36:05,188 adding 'onecodex-1.0.2.dist-info/WHEEL' 2026-05-13T18:36:05,190 adding 'onecodex-1.0.2.dist-info/entry_points.txt' 2026-05-13T18:36:05,191 adding 'onecodex-1.0.2.dist-info/top_level.txt' 2026-05-13T18:36:05,193 adding 'onecodex-1.0.2.dist-info/RECORD' 2026-05-13T18:36:05,231 removing build/bdist.linux-armv7l/wheel 2026-05-13T18:36:05,363 Building wheel for onecodex (pyproject.toml): finished with status 'done' 2026-05-13T18:36:05,430 Created wheel for onecodex: filename=onecodex-1.0.2-py3-none-any.whl size=2995108 sha256=7fbac834a9cddfd4c7ba7d25e7d81930c0b03689928ccfa6c9b82385c8329a62 2026-05-13T18:36:05,431 Stored in directory: /tmp/pip-ephem-wheel-cache-fnuam2vx/wheels/0c/48/9e/fa03edbab3c388b5ef220366d53c7507a445907d0288db5967 2026-05-13T18:36:05,448 Successfully built onecodex 2026-05-13T18:36:05,520 Removed build tracker: '/tmp/pip-build-tracker-tlvzk849'