2026-05-13T19:10:34,960 Created temporary directory: /tmp/pip-ephem-wheel-cache-zqicx0s4 2026-05-13T19:10:34,961 Created temporary directory: /tmp/pip-build-tracker-hlae6wuj 2026-05-13T19:10:34,962 Initialized build tracking at /tmp/pip-build-tracker-hlae6wuj 2026-05-13T19:10:34,962 Created build tracker: /tmp/pip-build-tracker-hlae6wuj 2026-05-13T19:10:34,963 Entered build tracker: /tmp/pip-build-tracker-hlae6wuj 2026-05-13T19:10:34,964 Created temporary directory: /tmp/pip-wheel-kctp7e8_ 2026-05-13T19:10:34,966 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-13T19:10:34,969 Created temporary directory: /tmp/pip-ephem-wheel-cache-vc8gnz8e 2026-05-13T19:10:34,991 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-13T19:10:34,994 2 location(s) to search for versions of multiqc: 2026-05-13T19:10:34,994 * https://pypi.org/simple/multiqc/ 2026-05-13T19:10:34,994 * https://www.piwheels.org/simple/multiqc/ 2026-05-13T19:10:34,995 Fetching project page and analyzing links: https://pypi.org/simple/multiqc/ 2026-05-13T19:10:34,996 Getting page https://pypi.org/simple/multiqc/ 2026-05-13T19:10:34,997 Found index url https://pypi.org/simple 2026-05-13T19:10:35,229 Fetched page https://pypi.org/simple/multiqc/ as application/vnd.pypi.simple.v1+json 2026-05-13T19:10:35,245 Found link https://files.pythonhosted.org/packages/44/ae/59e74780d4c66afbbac9053d2b6b0f12aaef94e4ce92cb00b71a20025098/multiqc-0.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.1 2026-05-13T19:10:35,246 Found link https://files.pythonhosted.org/packages/e9/7c/14ca085189df0aaba25054bf42fe3ceb74bcbee5c271d4c6f9c9c39bf1c0/multiqc-0.2.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.2.0 2026-05-13T19:10:35,247 Found link https://files.pythonhosted.org/packages/5d/cd/08627e78e84acc038dcab2ee6403af9eca73b1203fe505645a2c33c316b0/multiqc-0.3.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.0 2026-05-13T19:10:35,247 Found link https://files.pythonhosted.org/packages/47/bb/3339d0a27891c241de1bcc76122e779b67efad072140224a02e8700e5199/multiqc-0.3.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.1 2026-05-13T19:10:35,248 Found link https://files.pythonhosted.org/packages/e5/56/76229fca10700a78fe4a51baf2de7385509a48c7d281f42d9d311a547d76/multiqc-0.3.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.2 2026-05-13T19:10:35,249 Found link https://files.pythonhosted.org/packages/1c/e0/1e14407025dd461f1917354af543dcd912b669729ce77e0e0d29879d146e/multiqc-0.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.4 2026-05-13T19:10:35,250 Found link https://files.pythonhosted.org/packages/08/1c/d9833670aee1303332713f456140730a7a8335cc97bc7aa3c67f37a3b0e1/multiqc-0.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.5 2026-05-13T19:10:35,250 Found link https://files.pythonhosted.org/packages/23/d9/95a5e62eea95f220007d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-0.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.6 2026-05-13T19:10:35,251 Found link https://files.pythonhosted.org/packages/6b/b7/839b0c84448856bd3b2e8c381c4778c4b9c22ded890881d1cd12f9e686fa/multiqc-0.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.7 2026-05-13T19:10:35,252 Found link https://files.pythonhosted.org/packages/ab/e4/9a9eea1facbc3dcb7c90e38d3719eea43d4877aa54a887726982f1ba1671/multiqc-0.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.8 2026-05-13T19:10:35,252 Found link https://files.pythonhosted.org/packages/ca/7b/b65089cad82caa2618298482c6c80967bb22aca5f64a50df91f0a2888172/multiqc-0.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.9 2026-05-13T19:10:35,253 Found link https://files.pythonhosted.org/packages/61/79/92c1b7d04f87bf70405cbcd24ae059abd509b19b13b469934125311dbf9f/multiqc-1.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.0 2026-05-13T19:10:35,254 Found link https://files.pythonhosted.org/packages/a0/7c/bb475d750a39917218d48fd592be147bbe47f76f6afaeda84e350bd973fb/multiqc-1.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.1 2026-05-13T19:10:35,255 Found link https://files.pythonhosted.org/packages/7e/c5/5b7e713b892ceadfdb23afe74acd9f246298f880fa96a304276a235422b4/multiqc-1.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.2 2026-05-13T19:10:35,255 Found link https://files.pythonhosted.org/packages/2c/af/1183857d4f2ade150fb2e22282ff11e6f5355419d129ca4ee7200022177f/multiqc-1.3.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.3 2026-05-13T19:10:35,256 Found link https://files.pythonhosted.org/packages/af/a1/5c5702c4b0ce9ee6fb7d1c982cc6f20832a85bfce184dcb8178f0bdcb5df/multiqc-1.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.4 2026-05-13T19:10:35,256 Found link https://files.pythonhosted.org/packages/fa/3e/fbdcbaebadad2110eed3b4212ced58617cbd9badbfc728c5eabc53916b84/multiqc-1.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.5 2026-05-13T19:10:35,257 Found link https://files.pythonhosted.org/packages/0c/00/1fd8c0cc80531bf51a1a2b15928a408b0e8a442a6e59236edc2a76371284/multiqc-1.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.6 2026-05-13T19:10:35,258 Found link https://files.pythonhosted.org/packages/6b/c7/817d8ef024866e00625d94bbfa26e7a4131eedc166b3d65d7f54ebc90ed6/multiqc-1.7.tar.gz (from 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https://files.pythonhosted.org/packages/e0/6b/f6b8380c75a069c079c7b60b17d1cc0ec1c67a3c9623cfe4ee41a73fa9b4/multiqc-1.16-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-05-13T19:10:35,269 Found link https://files.pythonhosted.org/packages/36/3d/cc530c0cdd5c9dfd4e197c8147efa69c7da18023e8ef23d6daba4ac4e13c/multiqc-1.16.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.16 2026-05-13T19:10:35,269 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/a1/a5/2ee5d2546f04ef6addd930de9b772a6ee32151d4632319cde64aef822d50/multiqc-1.17-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-05-13T19:10:35,270 Found link https://files.pythonhosted.org/packages/e9/0d/2fc684e101ec6ce82ea5c1eaad1a0ab202fd08f50bee5847ef9e8168b7ad/multiqc-1.17.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.17 2026-05-13T19:10:35,270 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/ec/28/0e526e176fde109e06f0409e940e10893bc2e6e7d5cf91a44a3cf8ea214e/multiqc-1.18-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-05-13T19:10:35,271 Found link https://files.pythonhosted.org/packages/a5/17/6ed4268d6bc06489add671e5acbb7d429c97b99391b20d964689044cda77/multiqc-1.18.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.18 2026-05-13T19:10:35,272 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/d6/89/c164b49532afaf3308f809de48c519108592d0b204e368dca2a93b1b956b/multiqc-1.19-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-05-13T19:10:35,272 Found link https://files.pythonhosted.org/packages/1d/7c/0b3882a0916151b7877faef0f80ca403e1a7f4fc82b875b2dca32cdb8b89/multiqc-1.19.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.19 2026-05-13T19:10:35,273 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/6e/38/ec1edb7d5337c1bf4763e7ef0bb167ce14802742dff618a2fad3f251fb84/multiqc-1.20-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-05-13T19:10:35,273 Found link https://files.pythonhosted.org/packages/8c/c2/6016a7cb33e904a2637da26065a45198f8ed88bc9461d30a177c130360f8/multiqc-1.20.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.20 2026-05-13T19:10:35,274 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/05/93/f3d9efa1c949050e73a504e350a2f399bcc6c7db30e132e7469ce30cc36c/multiqc-1.21-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2026-05-13T19:10:35,275 Found link https://files.pythonhosted.org/packages/d7/4a/69fa3d76fb71a50c3f0f22a5b4d3fd6db3956f631862804f6524b66122d6/multiqc-1.21.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.21 2026-05-13T19:10:35,276 Skipping link: No binaries permitted for multiqc: 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https://archive1.piwheels.org/simple/multiqc/multiqc-1.6-py3-none-any.whl#sha256=e1600e93d93041641028f3364fa493f6f35a7b765d5f0aafd73089ace6f062e6 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,534 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.5-py3-none-any.whl#sha256=18ee8675a1f316d459b91049c42fde5061c6ae863063408fa063a4ecbeb0d527 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,534 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.4-py3-none-any.whl#sha256=02e593c71a8c2ed237d3f0138051b8e8c7f7f7c018ecc51b0cf46a17ad8c3f7f (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,535 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.3-py3-none-any.whl#sha256=780ff22fadd86cb81d9afe67c858e478ada911ed296d7d3f430a1da03059f96f (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,535 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.2-py3-none-any.whl#sha256=a2d3ab5bfec00fcaeb2b6b02477683cb026b7e803238094f6ba5706e9911e5db (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,536 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.1-py3-none-any.whl#sha256=17b18b185ba21595f7b6ab85364b590b11f5b90666bedd3fef8779d986b8783b (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,536 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.0-py3-none-any.whl#sha256=24119737c52e447f7913e17ef08e0a0e7218dd10ac535aa8eddb5181906eca44 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,537 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.9-py3-none-any.whl#sha256=8e08076a99a715a117ba6a56d8d23be94585467dff12235fde06aa32894f3588 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,537 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.8-py3-none-any.whl#sha256=24d31f7b916c4c11cb816a515f858d222d26027a5938cef4f0c3f52ad37e3329 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,538 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.7-py3-none-any.whl#sha256=27df9fe1e307b2b16f157f3a1548b69b44f18346fdd66794327008ade6ab90db (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,538 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.6-py3-none-any.whl#sha256=14044c5aa5f26ae68a9f1c47423f113e7a0d3e95d5b16dd4dcad1df4f7621982 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,539 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.5-py3-none-any.whl#sha256=5528eef1c13487a576717815ce7548964978e93f4668d414eb835d0267cd84ff (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,539 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.4-py3-none-any.whl#sha256=f67c3af42d83144411f956e962f736ef90b3e1946dd279ae47720a5142dd9a23 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,540 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.3.2-py3-none-any.whl#sha256=ca3e9c65ab5f1290d0e5ce999ac078ec0b75633ac8b64bc38f79d41a442f0147 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,540 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.3.1-py3-none-any.whl#sha256=e3fcc96c755277a57d0e7b1b8fac3256ff45b164d7a77655e169f54983470565 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,541 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.3.0-py3-none-any.whl#sha256=d1c8d281f8a75ded36ccdafbc131072a3ee9a5ddd896d32dd22f9945141a6b12 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,541 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.2.0-py3-none-any.whl#sha256=1ec95a9f8508ed8aee9eb0c6f7f3f77f6d477bf1405395854a1e2a1d2b5ea053 (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,541 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.1-py3-none-any.whl#sha256=aadbe1a0321716289d4557925ecb20ef7bb769a99c42ac213284f8c0af4eb0ea (from https://www.piwheels.org/simple/multiqc/) 2026-05-13T19:10:35,542 Skipping link: not a file: https://www.piwheels.org/simple/multiqc/ 2026-05-13T19:10:35,542 Skipping link: not a file: https://pypi.org/simple/multiqc/ 2026-05-13T19:10:35,568 Given no hashes to check 1 links for project 'multiqc': discarding no candidates 2026-05-13T19:10:35,586 Collecting multiqc==1.35 2026-05-13T19:10:35,588 Created temporary directory: /tmp/pip-unpack-njj4bipk 2026-05-13T19:10:35,740 Downloading multiqc-1.35.tar.gz (5.5 MB) 2026-05-13T19:10:38,880 Added multiqc==1.35 from https://files.pythonhosted.org/packages/af/a2/90e1b19ee65ec2619a4ff1767deefe32ba16c87f1363864778bd97ee5800/multiqc-1.35.tar.gz to build tracker '/tmp/pip-build-tracker-hlae6wuj' 2026-05-13T19:10:38,892 Created temporary directory: /tmp/pip-build-env-j1ef1l5m 2026-05-13T19:10:38,896 Installing build dependencies: started 2026-05-13T19:10:38,898 Running command pip subprocess to install build dependencies 2026-05-13T19:10:40,050 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-13T19:10:40,503 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-13T19:10:40,525 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-13T19:10:42,294 Collecting setuptools 2026-05-13T19:10:42,295 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-13T19:10:42,309 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-13T19:10:42,563 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-13T19:10:42,710 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-13T19:10:45,417 Installing collected packages: setuptools 2026-05-13T19:10:48,480 Successfully installed setuptools-82.0.1 2026-05-13T19:10:48,749 Installing build dependencies: finished with status 'done' 2026-05-13T19:10:48,756 Getting requirements to build wheel: started 2026-05-13T19:10:48,757 Running command Getting requirements to build wheel 2026-05-13T19:10:49,376 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-13T19:10:49,377 !! 2026-05-13T19:10:49,378 ******************************************************************************** 2026-05-13T19:10:49,378 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-13T19:10:49,379 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-13T19:10:49,380 or your builds will no longer be supported. 2026-05-13T19:10:49,380 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T19:10:49,381 ******************************************************************************** 2026-05-13T19:10:49,382 !! 2026-05-13T19:10:49,382 corresp(dist, value, root_dir) 2026-05-13T19:10:49,464 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T19:10:49,465 !! 2026-05-13T19:10:49,466 ******************************************************************************** 2026-05-13T19:10:49,466 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T19:10:49,467 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-13T19:10:49,468 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T19:10:49,469 ******************************************************************************** 2026-05-13T19:10:49,470 !! 2026-05-13T19:10:49,471 dist._finalize_license_expression() 2026-05-13T19:10:49,471 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T19:10:49,472 !! 2026-05-13T19:10:49,473 ******************************************************************************** 2026-05-13T19:10:49,473 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T19:10:49,474 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-13T19:10:49,475 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T19:10:49,476 ******************************************************************************** 2026-05-13T19:10:49,477 !! 2026-05-13T19:10:49,477 self._finalize_license_expression() 2026-05-13T19:10:49,478 running egg_info 2026-05-13T19:10:49,484 writing multiqc.egg-info/PKG-INFO 2026-05-13T19:10:49,493 writing dependency_links to multiqc.egg-info/dependency_links.txt 2026-05-13T19:10:49,501 writing entry points to multiqc.egg-info/entry_points.txt 2026-05-13T19:10:49,506 writing requirements to multiqc.egg-info/requires.txt 2026-05-13T19:10:49,507 writing top-level names to multiqc.egg-info/top_level.txt 2026-05-13T19:10:49,527 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2026-05-13T19:10:49,681 reading manifest template 'MANIFEST.in' 2026-05-13T19:10:50,131 adding license file 'LICENSE' 2026-05-13T19:10:50,170 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2026-05-13T19:10:50,267 Getting requirements to build wheel: finished with status 'done' 2026-05-13T19:10:50,271 Created temporary directory: /tmp/pip-modern-metadata-_onjqq75 2026-05-13T19:10:50,273 Preparing metadata (pyproject.toml): started 2026-05-13T19:10:50,274 Running command Preparing metadata (pyproject.toml) 2026-05-13T19:10:50,884 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-13T19:10:50,884 !! 2026-05-13T19:10:50,885 ******************************************************************************** 2026-05-13T19:10:50,885 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-13T19:10:50,886 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-13T19:10:50,887 or your builds will no longer be supported. 2026-05-13T19:10:50,888 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T19:10:50,888 ******************************************************************************** 2026-05-13T19:10:50,889 !! 2026-05-13T19:10:50,890 corresp(dist, value, root_dir) 2026-05-13T19:10:50,965 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T19:10:50,966 !! 2026-05-13T19:10:50,967 ******************************************************************************** 2026-05-13T19:10:50,967 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T19:10:50,968 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-13T19:10:50,969 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T19:10:50,970 ******************************************************************************** 2026-05-13T19:10:50,971 !! 2026-05-13T19:10:50,972 dist._finalize_license_expression() 2026-05-13T19:10:50,973 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T19:10:50,973 !! 2026-05-13T19:10:50,974 ******************************************************************************** 2026-05-13T19:10:50,975 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T19:10:50,976 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-13T19:10:50,977 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T19:10:50,977 ******************************************************************************** 2026-05-13T19:10:50,978 !! 2026-05-13T19:10:50,979 self._finalize_license_expression() 2026-05-13T19:10:50,981 running dist_info 2026-05-13T19:10:50,991 creating /tmp/pip-modern-metadata-_onjqq75/multiqc.egg-info 2026-05-13T19:10:50,992 writing /tmp/pip-modern-metadata-_onjqq75/multiqc.egg-info/PKG-INFO 2026-05-13T19:10:51,002 writing dependency_links to /tmp/pip-modern-metadata-_onjqq75/multiqc.egg-info/dependency_links.txt 2026-05-13T19:10:51,010 writing entry points to /tmp/pip-modern-metadata-_onjqq75/multiqc.egg-info/entry_points.txt 2026-05-13T19:10:51,015 writing requirements to /tmp/pip-modern-metadata-_onjqq75/multiqc.egg-info/requires.txt 2026-05-13T19:10:51,016 writing top-level names to /tmp/pip-modern-metadata-_onjqq75/multiqc.egg-info/top_level.txt 2026-05-13T19:10:51,018 writing manifest file '/tmp/pip-modern-metadata-_onjqq75/multiqc.egg-info/SOURCES.txt' 2026-05-13T19:10:51,036 reading manifest file '/tmp/pip-modern-metadata-_onjqq75/multiqc.egg-info/SOURCES.txt' 2026-05-13T19:10:51,039 reading manifest template 'MANIFEST.in' 2026-05-13T19:10:51,424 adding license file 'LICENSE' 2026-05-13T19:10:51,452 writing manifest file '/tmp/pip-modern-metadata-_onjqq75/multiqc.egg-info/SOURCES.txt' 2026-05-13T19:10:51,454 creating '/tmp/pip-modern-metadata-_onjqq75/multiqc-1.35.dist-info' 2026-05-13T19:10:51,583 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-13T19:10:51,594 Source in /tmp/pip-wheel-kctp7e8_/multiqc_40ea81a1cd65481f8657b3a37c2f3e0f has version 1.35, which satisfies requirement multiqc==1.35 from https://files.pythonhosted.org/packages/af/a2/90e1b19ee65ec2619a4ff1767deefe32ba16c87f1363864778bd97ee5800/multiqc-1.35.tar.gz 2026-05-13T19:10:51,595 Removed multiqc==1.35 from https://files.pythonhosted.org/packages/af/a2/90e1b19ee65ec2619a4ff1767deefe32ba16c87f1363864778bd97ee5800/multiqc-1.35.tar.gz from build tracker '/tmp/pip-build-tracker-hlae6wuj' 2026-05-13T19:10:51,615 Created temporary directory: /tmp/pip-unpack-prolisnx 2026-05-13T19:10:51,616 Building wheels for collected packages: multiqc 2026-05-13T19:10:51,621 Created temporary directory: /tmp/pip-wheel-o68a5cve 2026-05-13T19:10:51,621 Destination directory: /tmp/pip-wheel-o68a5cve 2026-05-13T19:10:51,623 Building wheel for multiqc (pyproject.toml): started 2026-05-13T19:10:51,624 Running command Building wheel for multiqc (pyproject.toml) 2026-05-13T19:10:52,187 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-13T19:10:52,188 !! 2026-05-13T19:10:52,189 ******************************************************************************** 2026-05-13T19:10:52,189 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-13T19:10:52,190 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-13T19:10:52,191 or your builds will no longer be supported. 2026-05-13T19:10:52,192 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T19:10:52,193 ******************************************************************************** 2026-05-13T19:10:52,194 !! 2026-05-13T19:10:52,194 corresp(dist, value, root_dir) 2026-05-13T19:10:52,263 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T19:10:52,263 !! 2026-05-13T19:10:52,264 ******************************************************************************** 2026-05-13T19:10:52,265 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T19:10:52,266 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-13T19:10:52,267 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T19:10:52,267 ******************************************************************************** 2026-05-13T19:10:52,269 !! 2026-05-13T19:10:52,269 dist._finalize_license_expression() 2026-05-13T19:10:52,270 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-13T19:10:52,270 !! 2026-05-13T19:10:52,271 ******************************************************************************** 2026-05-13T19:10:52,272 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-13T19:10:52,273 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-05-13T19:10:52,274 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-13T19:10:52,274 ******************************************************************************** 2026-05-13T19:10:52,275 !! 2026-05-13T19:10:52,276 self._finalize_license_expression() 2026-05-13T19:10:52,276 running bdist_wheel 2026-05-13T19:10:52,289 running build 2026-05-13T19:10:52,289 running build_py 2026-05-13T19:10:52,295 creating build/lib/multiqc 2026-05-13T19:10:52,297 copying multiqc/base_module.py -> build/lib/multiqc 2026-05-13T19:10:52,301 copying multiqc/validation.py -> build/lib/multiqc 2026-05-13T19:10:52,303 copying multiqc/config.py -> build/lib/multiqc 2026-05-13T19:10:52,306 copying multiqc/__main__.py -> build/lib/multiqc 2026-05-13T19:10:52,307 copying multiqc/__init__.py -> build/lib/multiqc 2026-05-13T19:10:52,309 copying multiqc/interactive.py -> build/lib/multiqc 2026-05-13T19:10:52,312 copying multiqc/multiqc.py -> build/lib/multiqc 2026-05-13T19:10:52,315 copying multiqc/types.py -> build/lib/multiqc 2026-05-13T19:10:52,317 copying multiqc/report.py -> build/lib/multiqc 2026-05-13T19:10:52,320 running egg_info 2026-05-13T19:10:52,329 writing multiqc.egg-info/PKG-INFO 2026-05-13T19:10:52,337 writing dependency_links to multiqc.egg-info/dependency_links.txt 2026-05-13T19:10:52,345 writing entry points to multiqc.egg-info/entry_points.txt 2026-05-13T19:10:52,350 writing requirements to multiqc.egg-info/requires.txt 2026-05-13T19:10:52,351 writing top-level names to multiqc.egg-info/top_level.txt 2026-05-13T19:10:52,361 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2026-05-13T19:10:52,404 reading manifest template 'MANIFEST.in' 2026-05-13T19:10:53,005 adding license file 'LICENSE' 2026-05-13T19:10:53,043 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2026-05-13T19:10:53,046 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.core' is absent from the `packages` configuration. 2026-05-13T19:10:53,047 !! 2026-05-13T19:10:53,048 ******************************************************************************** 2026-05-13T19:10:53,049 ############################ 2026-05-13T19:10:53,049 # Package would be ignored # 2026-05-13T19:10:53,050 ############################ 2026-05-13T19:10:53,050 Python recognizes 'multiqc.core' as an importable package[^1], 2026-05-13T19:10:53,051 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,052 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,052 package, please make sure that 'multiqc.core' is explicitly added 2026-05-13T19:10:53,053 to the `packages` configuration field. 2026-05-13T19:10:53,054 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,054 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,055 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,056 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,057 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,058 If you don't want 'multiqc.core' to be distributed and are 2026-05-13T19:10:53,058 already explicitly excluding 'multiqc.core' via 2026-05-13T19:10:53,058 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,059 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,059 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,060 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,061 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,062 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,063 even if it does not contain any `.py` files. 2026-05-13T19:10:53,063 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,063 directory, all directories are treated like packages. 2026-05-13T19:10:53,064 ******************************************************************************** 2026-05-13T19:10:53,064 !! 2026-05-13T19:10:53,065 check.warn(importable) 2026-05-13T19:10:53,065 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.core.special_case_modules' is absent from the `packages` configuration. 2026-05-13T19:10:53,065 !! 2026-05-13T19:10:53,066 ******************************************************************************** 2026-05-13T19:10:53,067 ############################ 2026-05-13T19:10:53,067 # Package would be ignored # 2026-05-13T19:10:53,068 ############################ 2026-05-13T19:10:53,068 Python recognizes 'multiqc.core.special_case_modules' as an importable package[^1], 2026-05-13T19:10:53,068 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,069 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,069 package, please make sure that 'multiqc.core.special_case_modules' is explicitly added 2026-05-13T19:10:53,070 to the `packages` configuration field. 2026-05-13T19:10:53,071 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,071 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,072 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,072 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,073 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,074 If you don't want 'multiqc.core.special_case_modules' to be distributed and are 2026-05-13T19:10:53,074 already explicitly excluding 'multiqc.core.special_case_modules' via 2026-05-13T19:10:53,075 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,075 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,076 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,076 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,077 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,078 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,079 even if it does not contain any `.py` files. 2026-05-13T19:10:53,079 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,080 directory, all directories are treated like packages. 2026-05-13T19:10:53,080 ******************************************************************************** 2026-05-13T19:10:53,081 !! 2026-05-13T19:10:53,081 check.warn(importable) 2026-05-13T19:10:53,082 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules' is absent from the `packages` configuration. 2026-05-13T19:10:53,082 !! 2026-05-13T19:10:53,083 ******************************************************************************** 2026-05-13T19:10:53,084 ############################ 2026-05-13T19:10:53,084 # Package would be ignored # 2026-05-13T19:10:53,084 ############################ 2026-05-13T19:10:53,085 Python recognizes 'multiqc.modules' as an importable package[^1], 2026-05-13T19:10:53,085 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,086 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,086 package, please make sure that 'multiqc.modules' is explicitly added 2026-05-13T19:10:53,087 to the `packages` configuration field. 2026-05-13T19:10:53,087 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,088 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,088 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,089 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,089 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,090 If you don't want 'multiqc.modules' to be distributed and are 2026-05-13T19:10:53,090 already explicitly excluding 'multiqc.modules' via 2026-05-13T19:10:53,091 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,091 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,091 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,092 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,093 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,094 even if it does not contain any `.py` files. 2026-05-13T19:10:53,095 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,095 directory, all directories are treated like packages. 2026-05-13T19:10:53,096 ******************************************************************************** 2026-05-13T19:10:53,096 !! 2026-05-13T19:10:53,097 check.warn(importable) 2026-05-13T19:10:53,097 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.adapterremoval' is absent from the `packages` configuration. 2026-05-13T19:10:53,098 !! 2026-05-13T19:10:53,099 ******************************************************************************** 2026-05-13T19:10:53,099 ############################ 2026-05-13T19:10:53,099 # Package would be ignored # 2026-05-13T19:10:53,100 ############################ 2026-05-13T19:10:53,100 Python recognizes 'multiqc.modules.adapterremoval' as an importable package[^1], 2026-05-13T19:10:53,101 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,101 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,102 package, please make sure that 'multiqc.modules.adapterremoval' is explicitly added 2026-05-13T19:10:53,102 to the `packages` configuration field. 2026-05-13T19:10:53,103 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,104 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,104 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,105 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,106 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,106 If you don't want 'multiqc.modules.adapterremoval' to be distributed and are 2026-05-13T19:10:53,107 already explicitly excluding 'multiqc.modules.adapterremoval' via 2026-05-13T19:10:53,107 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,108 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,109 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,110 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,111 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,111 even if it does not contain any `.py` files. 2026-05-13T19:10:53,111 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,112 directory, all directories are treated like packages. 2026-05-13T19:10:53,112 ******************************************************************************** 2026-05-13T19:10:53,113 !! 2026-05-13T19:10:53,113 check.warn(importable) 2026-05-13T19:10:53,114 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.afterqc' is absent from the `packages` configuration. 2026-05-13T19:10:53,114 !! 2026-05-13T19:10:53,115 ******************************************************************************** 2026-05-13T19:10:53,115 ############################ 2026-05-13T19:10:53,115 # Package would be ignored # 2026-05-13T19:10:53,116 ############################ 2026-05-13T19:10:53,116 Python recognizes 'multiqc.modules.afterqc' as an importable package[^1], 2026-05-13T19:10:53,117 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,117 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,118 package, please make sure that 'multiqc.modules.afterqc' is explicitly added 2026-05-13T19:10:53,118 to the `packages` configuration field. 2026-05-13T19:10:53,119 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,119 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,120 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,121 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,121 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,122 If you don't want 'multiqc.modules.afterqc' to be distributed and are 2026-05-13T19:10:53,123 already explicitly excluding 'multiqc.modules.afterqc' via 2026-05-13T19:10:53,123 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,124 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,124 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,125 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,126 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,127 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,127 even if it does not contain any `.py` files. 2026-05-13T19:10:53,128 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,128 directory, all directories are treated like packages. 2026-05-13T19:10:53,129 ******************************************************************************** 2026-05-13T19:10:53,130 !! 2026-05-13T19:10:53,130 check.warn(importable) 2026-05-13T19:10:53,131 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.anglerfish' is absent from the `packages` configuration. 2026-05-13T19:10:53,131 !! 2026-05-13T19:10:53,132 ******************************************************************************** 2026-05-13T19:10:53,132 ############################ 2026-05-13T19:10:53,133 # Package would be ignored # 2026-05-13T19:10:53,133 ############################ 2026-05-13T19:10:53,133 Python recognizes 'multiqc.modules.anglerfish' as an importable package[^1], 2026-05-13T19:10:53,134 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,134 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,134 package, please make sure that 'multiqc.modules.anglerfish' is explicitly added 2026-05-13T19:10:53,135 to the `packages` configuration field. 2026-05-13T19:10:53,136 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,136 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,136 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,137 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,138 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,138 If you don't want 'multiqc.modules.anglerfish' to be distributed and are 2026-05-13T19:10:53,139 already explicitly excluding 'multiqc.modules.anglerfish' via 2026-05-13T19:10:53,139 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,140 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,140 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,141 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,142 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,143 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,143 even if it does not contain any `.py` files. 2026-05-13T19:10:53,144 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,144 directory, all directories are treated like packages. 2026-05-13T19:10:53,144 ******************************************************************************** 2026-05-13T19:10:53,145 !! 2026-05-13T19:10:53,146 check.warn(importable) 2026-05-13T19:10:53,146 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ataqv' is absent from the `packages` configuration. 2026-05-13T19:10:53,146 !! 2026-05-13T19:10:53,147 ******************************************************************************** 2026-05-13T19:10:53,148 ############################ 2026-05-13T19:10:53,148 # Package would be ignored # 2026-05-13T19:10:53,148 ############################ 2026-05-13T19:10:53,149 Python recognizes 'multiqc.modules.ataqv' as an importable package[^1], 2026-05-13T19:10:53,149 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,150 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,151 package, please make sure that 'multiqc.modules.ataqv' is explicitly added 2026-05-13T19:10:53,151 to the `packages` configuration field. 2026-05-13T19:10:53,152 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,152 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,153 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,154 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,154 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,155 If you don't want 'multiqc.modules.ataqv' to be distributed and are 2026-05-13T19:10:53,155 already explicitly excluding 'multiqc.modules.ataqv' via 2026-05-13T19:10:53,156 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,156 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,156 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,157 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,158 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,159 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,159 even if it does not contain any `.py` files. 2026-05-13T19:10:53,159 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,160 directory, all directories are treated like packages. 2026-05-13T19:10:53,160 ******************************************************************************** 2026-05-13T19:10:53,161 !! 2026-05-13T19:10:53,161 check.warn(importable) 2026-05-13T19:10:53,161 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bakta' is absent from the `packages` configuration. 2026-05-13T19:10:53,162 !! 2026-05-13T19:10:53,163 ******************************************************************************** 2026-05-13T19:10:53,163 ############################ 2026-05-13T19:10:53,163 # Package would be ignored # 2026-05-13T19:10:53,164 ############################ 2026-05-13T19:10:53,164 Python recognizes 'multiqc.modules.bakta' as an importable package[^1], 2026-05-13T19:10:53,165 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,165 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,166 package, please make sure that 'multiqc.modules.bakta' is explicitly added 2026-05-13T19:10:53,166 to the `packages` configuration field. 2026-05-13T19:10:53,167 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,167 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,168 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,169 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,169 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,170 If you don't want 'multiqc.modules.bakta' to be distributed and are 2026-05-13T19:10:53,171 already explicitly excluding 'multiqc.modules.bakta' via 2026-05-13T19:10:53,171 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,171 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,172 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,173 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,173 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,175 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,175 even if it does not contain any `.py` files. 2026-05-13T19:10:53,176 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,176 directory, all directories are treated like packages. 2026-05-13T19:10:53,176 ******************************************************************************** 2026-05-13T19:10:53,177 !! 2026-05-13T19:10:53,178 check.warn(importable) 2026-05-13T19:10:53,178 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bamdst' is absent from the `packages` configuration. 2026-05-13T19:10:53,178 !! 2026-05-13T19:10:53,179 ******************************************************************************** 2026-05-13T19:10:53,179 ############################ 2026-05-13T19:10:53,180 # Package would be ignored # 2026-05-13T19:10:53,180 ############################ 2026-05-13T19:10:53,180 Python recognizes 'multiqc.modules.bamdst' as an importable package[^1], 2026-05-13T19:10:53,181 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,181 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,182 package, please make sure that 'multiqc.modules.bamdst' is explicitly added 2026-05-13T19:10:53,182 to the `packages` configuration field. 2026-05-13T19:10:53,183 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,183 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,184 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,184 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,186 If you don't want 'multiqc.modules.bamdst' to be distributed and are 2026-05-13T19:10:53,187 already explicitly excluding 'multiqc.modules.bamdst' via 2026-05-13T19:10:53,187 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,187 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,188 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,189 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,190 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,191 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,192 even if it does not contain any `.py` files. 2026-05-13T19:10:53,192 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,193 directory, all directories are treated like packages. 2026-05-13T19:10:53,193 ******************************************************************************** 2026-05-13T19:10:53,194 !! 2026-05-13T19:10:53,194 check.warn(importable) 2026-05-13T19:10:53,195 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bamtools' is absent from the `packages` configuration. 2026-05-13T19:10:53,195 !! 2026-05-13T19:10:53,196 ******************************************************************************** 2026-05-13T19:10:53,197 ############################ 2026-05-13T19:10:53,197 # Package would be ignored # 2026-05-13T19:10:53,198 ############################ 2026-05-13T19:10:53,198 Python recognizes 'multiqc.modules.bamtools' as an importable package[^1], 2026-05-13T19:10:53,199 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,200 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,200 package, please make sure that 'multiqc.modules.bamtools' is explicitly added 2026-05-13T19:10:53,201 to the `packages` configuration field. 2026-05-13T19:10:53,202 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,202 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,202 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,203 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,204 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,204 If you don't want 'multiqc.modules.bamtools' to be distributed and are 2026-05-13T19:10:53,205 already explicitly excluding 'multiqc.modules.bamtools' via 2026-05-13T19:10:53,205 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,205 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,206 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,207 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,207 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,209 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,209 even if it does not contain any `.py` files. 2026-05-13T19:10:53,209 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,210 directory, all directories are treated like packages. 2026-05-13T19:10:53,210 ******************************************************************************** 2026-05-13T19:10:53,211 !! 2026-05-13T19:10:53,212 check.warn(importable) 2026-05-13T19:10:53,212 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bases2fastq' is absent from the `packages` configuration. 2026-05-13T19:10:53,212 !! 2026-05-13T19:10:53,213 ******************************************************************************** 2026-05-13T19:10:53,214 ############################ 2026-05-13T19:10:53,214 # Package would be ignored # 2026-05-13T19:10:53,215 ############################ 2026-05-13T19:10:53,215 Python recognizes 'multiqc.modules.bases2fastq' as an importable package[^1], 2026-05-13T19:10:53,215 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,216 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,217 package, please make sure that 'multiqc.modules.bases2fastq' is explicitly added 2026-05-13T19:10:53,217 to the `packages` configuration field. 2026-05-13T19:10:53,218 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,219 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,219 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,220 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,221 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,222 If you don't want 'multiqc.modules.bases2fastq' to be distributed and are 2026-05-13T19:10:53,222 already explicitly excluding 'multiqc.modules.bases2fastq' via 2026-05-13T19:10:53,223 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,223 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,224 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,225 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,225 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,226 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,227 even if it does not contain any `.py` files. 2026-05-13T19:10:53,227 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,227 directory, all directories are treated like packages. 2026-05-13T19:10:53,228 ******************************************************************************** 2026-05-13T19:10:53,229 !! 2026-05-13T19:10:53,229 check.warn(importable) 2026-05-13T19:10:53,229 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bases2fastq.tests' is absent from the `packages` configuration. 2026-05-13T19:10:53,230 !! 2026-05-13T19:10:53,230 ******************************************************************************** 2026-05-13T19:10:53,231 ############################ 2026-05-13T19:10:53,231 # Package would be ignored # 2026-05-13T19:10:53,232 ############################ 2026-05-13T19:10:53,232 Python recognizes 'multiqc.modules.bases2fastq.tests' as an importable package[^1], 2026-05-13T19:10:53,232 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,233 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,233 package, please make sure that 'multiqc.modules.bases2fastq.tests' is explicitly added 2026-05-13T19:10:53,234 to the `packages` configuration field. 2026-05-13T19:10:53,235 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,235 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,236 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,236 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,237 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,238 If you don't want 'multiqc.modules.bases2fastq.tests' to be distributed and are 2026-05-13T19:10:53,238 already explicitly excluding 'multiqc.modules.bases2fastq.tests' via 2026-05-13T19:10:53,239 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,239 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,240 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,241 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,241 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,243 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,243 even if it does not contain any `.py` files. 2026-05-13T19:10:53,244 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,244 directory, all directories are treated like packages. 2026-05-13T19:10:53,244 ******************************************************************************** 2026-05-13T19:10:53,245 !! 2026-05-13T19:10:53,246 check.warn(importable) 2026-05-13T19:10:53,246 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bases2fastq.tests.fixtures' is absent from the `packages` configuration. 2026-05-13T19:10:53,247 !! 2026-05-13T19:10:53,247 ******************************************************************************** 2026-05-13T19:10:53,248 ############################ 2026-05-13T19:10:53,248 # Package would be ignored # 2026-05-13T19:10:53,249 ############################ 2026-05-13T19:10:53,249 Python recognizes 'multiqc.modules.bases2fastq.tests.fixtures' as an importable package[^1], 2026-05-13T19:10:53,249 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,250 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,250 package, please make sure that 'multiqc.modules.bases2fastq.tests.fixtures' is explicitly added 2026-05-13T19:10:53,251 to the `packages` configuration field. 2026-05-13T19:10:53,251 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,252 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,252 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,253 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,254 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,254 If you don't want 'multiqc.modules.bases2fastq.tests.fixtures' to be distributed and are 2026-05-13T19:10:53,255 already explicitly excluding 'multiqc.modules.bases2fastq.tests.fixtures' via 2026-05-13T19:10:53,255 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,256 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,256 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,257 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,258 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,259 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,260 even if it does not contain any `.py` files. 2026-05-13T19:10:53,260 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,261 directory, all directories are treated like packages. 2026-05-13T19:10:53,261 ******************************************************************************** 2026-05-13T19:10:53,262 !! 2026-05-13T19:10:53,262 check.warn(importable) 2026-05-13T19:10:53,263 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndDefaultProject' is absent from the `packages` configuration. 2026-05-13T19:10:53,263 !! 2026-05-13T19:10:53,264 ******************************************************************************** 2026-05-13T19:10:53,265 ############################ 2026-05-13T19:10:53,265 # Package would be ignored # 2026-05-13T19:10:53,265 ############################ 2026-05-13T19:10:53,266 Python recognizes 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndDefaultProject' as an importable package[^1], 2026-05-13T19:10:53,266 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,267 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,268 package, please make sure that 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndDefaultProject' is explicitly added 2026-05-13T19:10:53,268 to the `packages` configuration field. 2026-05-13T19:10:53,269 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,269 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,270 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,271 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,272 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,272 If you don't want 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndDefaultProject' to be distributed and are 2026-05-13T19:10:53,273 already explicitly excluding 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndDefaultProject' via 2026-05-13T19:10:53,273 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,273 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,274 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,274 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,275 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,276 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,277 even if it does not contain any `.py` files. 2026-05-13T19:10:53,277 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,277 directory, all directories are treated like packages. 2026-05-13T19:10:53,278 ******************************************************************************** 2026-05-13T19:10:53,279 !! 2026-05-13T19:10:53,279 check.warn(importable) 2026-05-13T19:10:53,279 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndDefaultProject.Samples.DefaultProject' is absent from the `packages` configuration. 2026-05-13T19:10:53,280 !! 2026-05-13T19:10:53,281 ******************************************************************************** 2026-05-13T19:10:53,281 ############################ 2026-05-13T19:10:53,282 # Package would be ignored # 2026-05-13T19:10:53,282 ############################ 2026-05-13T19:10:53,282 Python recognizes 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndDefaultProject.Samples.DefaultProject' as an importable package[^1], 2026-05-13T19:10:53,283 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,284 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,284 package, please make sure that 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndDefaultProject.Samples.DefaultProject' is explicitly added 2026-05-13T19:10:53,284 to the `packages` configuration field. 2026-05-13T19:10:53,285 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,286 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,286 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,287 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,288 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,289 If you don't want 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndDefaultProject.Samples.DefaultProject' to be distributed and are 2026-05-13T19:10:53,289 already explicitly excluding 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndDefaultProject.Samples.DefaultProject' via 2026-05-13T19:10:53,290 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,290 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,291 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,292 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,292 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,293 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,294 even if it does not contain any `.py` files. 2026-05-13T19:10:53,294 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,295 directory, all directories are treated like packages. 2026-05-13T19:10:53,295 ******************************************************************************** 2026-05-13T19:10:53,296 !! 2026-05-13T19:10:53,296 check.warn(importable) 2026-05-13T19:10:53,296 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProject' is absent from the `packages` configuration. 2026-05-13T19:10:53,297 !! 2026-05-13T19:10:53,297 ******************************************************************************** 2026-05-13T19:10:53,298 ############################ 2026-05-13T19:10:53,298 # Package would be ignored # 2026-05-13T19:10:53,299 ############################ 2026-05-13T19:10:53,299 Python recognizes 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProject' as an importable package[^1], 2026-05-13T19:10:53,299 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,300 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,301 package, please make sure that 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProject' is explicitly added 2026-05-13T19:10:53,301 to the `packages` configuration field. 2026-05-13T19:10:53,302 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,302 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,303 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,304 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,304 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,305 If you don't want 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProject' to be distributed and are 2026-05-13T19:10:53,306 already explicitly excluding 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProject' via 2026-05-13T19:10:53,306 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,307 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,307 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,308 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,309 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,310 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,311 even if it does not contain any `.py` files. 2026-05-13T19:10:53,311 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,312 directory, all directories are treated like packages. 2026-05-13T19:10:53,312 ******************************************************************************** 2026-05-13T19:10:53,313 !! 2026-05-13T19:10:53,313 check.warn(importable) 2026-05-13T19:10:53,314 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProjectLowPolonies' is absent from the `packages` configuration. 2026-05-13T19:10:53,314 !! 2026-05-13T19:10:53,315 ******************************************************************************** 2026-05-13T19:10:53,316 ############################ 2026-05-13T19:10:53,316 # Package would be ignored # 2026-05-13T19:10:53,316 ############################ 2026-05-13T19:10:53,317 Python recognizes 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProjectLowPolonies' as an importable package[^1], 2026-05-13T19:10:53,317 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,318 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,318 package, please make sure that 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProjectLowPolonies' is explicitly added 2026-05-13T19:10:53,319 to the `packages` configuration field. 2026-05-13T19:10:53,320 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,320 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,320 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,321 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,322 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,323 If you don't want 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProjectLowPolonies' to be distributed and are 2026-05-13T19:10:53,323 already explicitly excluding 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProjectLowPolonies' via 2026-05-13T19:10:53,323 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,324 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,324 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,325 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,326 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,327 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,327 even if it does not contain any `.py` files. 2026-05-13T19:10:53,328 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,328 directory, all directories are treated like packages. 2026-05-13T19:10:53,329 ******************************************************************************** 2026-05-13T19:10:53,330 !! 2026-05-13T19:10:53,330 check.warn(importable) 2026-05-13T19:10:53,330 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProjectWithLanes' is absent from the `packages` configuration. 2026-05-13T19:10:53,331 !! 2026-05-13T19:10:53,332 ******************************************************************************** 2026-05-13T19:10:53,332 ############################ 2026-05-13T19:10:53,333 # Package would be ignored # 2026-05-13T19:10:53,333 ############################ 2026-05-13T19:10:53,333 Python recognizes 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProjectWithLanes' as an importable package[^1], 2026-05-13T19:10:53,334 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,335 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,335 package, please make sure that 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProjectWithLanes' is explicitly added 2026-05-13T19:10:53,336 to the `packages` configuration field. 2026-05-13T19:10:53,337 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,337 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,338 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,338 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,340 If you don't want 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProjectWithLanes' to be distributed and are 2026-05-13T19:10:53,340 already explicitly excluding 'multiqc.modules.bases2fastq.tests.fixtures.PairedEndNoProjectWithLanes' via 2026-05-13T19:10:53,341 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,341 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,341 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,342 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,343 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,344 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,344 even if it does not contain any `.py` files. 2026-05-13T19:10:53,345 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,345 directory, all directories are treated like packages. 2026-05-13T19:10:53,345 ******************************************************************************** 2026-05-13T19:10:53,346 !! 2026-05-13T19:10:53,347 check.warn(importable) 2026-05-13T19:10:53,347 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bbduk' is absent from the `packages` configuration. 2026-05-13T19:10:53,347 !! 2026-05-13T19:10:53,348 ******************************************************************************** 2026-05-13T19:10:53,349 ############################ 2026-05-13T19:10:53,349 # Package would be ignored # 2026-05-13T19:10:53,350 ############################ 2026-05-13T19:10:53,350 Python recognizes 'multiqc.modules.bbduk' as an importable package[^1], 2026-05-13T19:10:53,351 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,351 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,352 package, please make sure that 'multiqc.modules.bbduk' is explicitly added 2026-05-13T19:10:53,352 to the `packages` configuration field. 2026-05-13T19:10:53,353 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,354 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,354 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,355 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,356 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,357 If you don't want 'multiqc.modules.bbduk' to be distributed and are 2026-05-13T19:10:53,358 already explicitly excluding 'multiqc.modules.bbduk' via 2026-05-13T19:10:53,358 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,358 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,359 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,360 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,361 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,362 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,362 even if it does not contain any `.py` files. 2026-05-13T19:10:53,363 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,363 directory, all directories are treated like packages. 2026-05-13T19:10:53,363 ******************************************************************************** 2026-05-13T19:10:53,364 !! 2026-05-13T19:10:53,364 check.warn(importable) 2026-05-13T19:10:53,365 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bbmap' is absent from the `packages` configuration. 2026-05-13T19:10:53,365 !! 2026-05-13T19:10:53,366 ******************************************************************************** 2026-05-13T19:10:53,366 ############################ 2026-05-13T19:10:53,367 # Package would be ignored # 2026-05-13T19:10:53,367 ############################ 2026-05-13T19:10:53,367 Python recognizes 'multiqc.modules.bbmap' as an importable package[^1], 2026-05-13T19:10:53,368 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,368 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,369 package, please make sure that 'multiqc.modules.bbmap' is explicitly added 2026-05-13T19:10:53,369 to the `packages` configuration field. 2026-05-13T19:10:53,370 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,370 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,371 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,372 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,373 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,373 If you don't want 'multiqc.modules.bbmap' to be distributed and are 2026-05-13T19:10:53,374 already explicitly excluding 'multiqc.modules.bbmap' via 2026-05-13T19:10:53,374 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,375 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,375 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,376 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,377 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,378 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,379 even if it does not contain any `.py` files. 2026-05-13T19:10:53,379 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,380 directory, all directories are treated like packages. 2026-05-13T19:10:53,380 ******************************************************************************** 2026-05-13T19:10:53,381 !! 2026-05-13T19:10:53,382 check.warn(importable) 2026-05-13T19:10:53,382 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bcftools' is absent from the `packages` configuration. 2026-05-13T19:10:53,383 !! 2026-05-13T19:10:53,384 ******************************************************************************** 2026-05-13T19:10:53,384 ############################ 2026-05-13T19:10:53,385 # Package would be ignored # 2026-05-13T19:10:53,385 ############################ 2026-05-13T19:10:53,385 Python recognizes 'multiqc.modules.bcftools' as an importable package[^1], 2026-05-13T19:10:53,386 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,387 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,387 package, please make sure that 'multiqc.modules.bcftools' is explicitly added 2026-05-13T19:10:53,388 to the `packages` configuration field. 2026-05-13T19:10:53,388 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,389 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,389 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,390 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,391 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,391 If you don't want 'multiqc.modules.bcftools' to be distributed and are 2026-05-13T19:10:53,392 already explicitly excluding 'multiqc.modules.bcftools' via 2026-05-13T19:10:53,392 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,393 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,393 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,394 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,395 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,396 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,397 even if it does not contain any `.py` files. 2026-05-13T19:10:53,397 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,398 directory, all directories are treated like packages. 2026-05-13T19:10:53,398 ******************************************************************************** 2026-05-13T19:10:53,399 !! 2026-05-13T19:10:53,400 check.warn(importable) 2026-05-13T19:10:53,400 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bcl2fastq' is absent from the `packages` configuration. 2026-05-13T19:10:53,401 !! 2026-05-13T19:10:53,402 ******************************************************************************** 2026-05-13T19:10:53,402 ############################ 2026-05-13T19:10:53,403 # Package would be ignored # 2026-05-13T19:10:53,403 ############################ 2026-05-13T19:10:53,404 Python recognizes 'multiqc.modules.bcl2fastq' as an importable package[^1], 2026-05-13T19:10:53,404 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,405 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,405 package, please make sure that 'multiqc.modules.bcl2fastq' is explicitly added 2026-05-13T19:10:53,406 to the `packages` configuration field. 2026-05-13T19:10:53,407 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,407 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,408 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,409 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,410 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,410 If you don't want 'multiqc.modules.bcl2fastq' to be distributed and are 2026-05-13T19:10:53,411 already explicitly excluding 'multiqc.modules.bcl2fastq' via 2026-05-13T19:10:53,412 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,412 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,412 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,413 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,414 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,415 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,415 even if it does not contain any `.py` files. 2026-05-13T19:10:53,415 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,416 directory, all directories are treated like packages. 2026-05-13T19:10:53,416 ******************************************************************************** 2026-05-13T19:10:53,417 !! 2026-05-13T19:10:53,417 check.warn(importable) 2026-05-13T19:10:53,418 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bclconvert' is absent from the `packages` configuration. 2026-05-13T19:10:53,418 !! 2026-05-13T19:10:53,419 ******************************************************************************** 2026-05-13T19:10:53,419 ############################ 2026-05-13T19:10:53,419 # Package would be ignored # 2026-05-13T19:10:53,420 ############################ 2026-05-13T19:10:53,420 Python recognizes 'multiqc.modules.bclconvert' as an importable package[^1], 2026-05-13T19:10:53,421 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,421 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,422 package, please make sure that 'multiqc.modules.bclconvert' is explicitly added 2026-05-13T19:10:53,422 to the `packages` configuration field. 2026-05-13T19:10:53,423 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,424 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,425 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,425 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,426 If you don't want 'multiqc.modules.bclconvert' to be distributed and are 2026-05-13T19:10:53,427 already explicitly excluding 'multiqc.modules.bclconvert' via 2026-05-13T19:10:53,427 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,428 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,428 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,429 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,430 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,431 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,432 even if it does not contain any `.py` files. 2026-05-13T19:10:53,432 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,433 directory, all directories are treated like packages. 2026-05-13T19:10:53,433 ******************************************************************************** 2026-05-13T19:10:53,434 !! 2026-05-13T19:10:53,434 check.warn(importable) 2026-05-13T19:10:53,435 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biobambam2' is absent from the `packages` configuration. 2026-05-13T19:10:53,435 !! 2026-05-13T19:10:53,436 ******************************************************************************** 2026-05-13T19:10:53,437 ############################ 2026-05-13T19:10:53,437 # Package would be ignored # 2026-05-13T19:10:53,438 ############################ 2026-05-13T19:10:53,438 Python recognizes 'multiqc.modules.biobambam2' as an importable package[^1], 2026-05-13T19:10:53,439 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,439 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,440 package, please make sure that 'multiqc.modules.biobambam2' is explicitly added 2026-05-13T19:10:53,440 to the `packages` configuration field. 2026-05-13T19:10:53,441 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,441 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,442 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,443 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,444 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,444 If you don't want 'multiqc.modules.biobambam2' to be distributed and are 2026-05-13T19:10:53,445 already explicitly excluding 'multiqc.modules.biobambam2' via 2026-05-13T19:10:53,445 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,446 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,446 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,448 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,449 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,450 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,450 even if it does not contain any `.py` files. 2026-05-13T19:10:53,451 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,451 directory, all directories are treated like packages. 2026-05-13T19:10:53,452 ******************************************************************************** 2026-05-13T19:10:53,453 !! 2026-05-13T19:10:53,453 check.warn(importable) 2026-05-13T19:10:53,453 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biobloomtools' is absent from the `packages` configuration. 2026-05-13T19:10:53,454 !! 2026-05-13T19:10:53,455 ******************************************************************************** 2026-05-13T19:10:53,455 ############################ 2026-05-13T19:10:53,456 # Package would be ignored # 2026-05-13T19:10:53,456 ############################ 2026-05-13T19:10:53,457 Python recognizes 'multiqc.modules.biobloomtools' as an importable package[^1], 2026-05-13T19:10:53,457 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,458 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,458 package, please make sure that 'multiqc.modules.biobloomtools' is explicitly added 2026-05-13T19:10:53,459 to the `packages` configuration field. 2026-05-13T19:10:53,460 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,460 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,461 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,462 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,462 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,463 If you don't want 'multiqc.modules.biobloomtools' to be distributed and are 2026-05-13T19:10:53,463 already explicitly excluding 'multiqc.modules.biobloomtools' via 2026-05-13T19:10:53,464 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,464 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,465 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,465 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,466 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,467 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,467 even if it does not contain any `.py` files. 2026-05-13T19:10:53,468 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,468 directory, all directories are treated like packages. 2026-05-13T19:10:53,469 ******************************************************************************** 2026-05-13T19:10:53,469 !! 2026-05-13T19:10:53,470 check.warn(importable) 2026-05-13T19:10:53,470 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biscuit' is absent from the `packages` configuration. 2026-05-13T19:10:53,471 !! 2026-05-13T19:10:53,472 ******************************************************************************** 2026-05-13T19:10:53,472 ############################ 2026-05-13T19:10:53,472 # Package would be ignored # 2026-05-13T19:10:53,473 ############################ 2026-05-13T19:10:53,473 Python recognizes 'multiqc.modules.biscuit' as an importable package[^1], 2026-05-13T19:10:53,474 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,474 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,475 package, please make sure that 'multiqc.modules.biscuit' is explicitly added 2026-05-13T19:10:53,475 to the `packages` configuration field. 2026-05-13T19:10:53,476 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,477 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,477 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,478 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,479 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,480 If you don't want 'multiqc.modules.biscuit' to be distributed and are 2026-05-13T19:10:53,480 already explicitly excluding 'multiqc.modules.biscuit' via 2026-05-13T19:10:53,481 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,481 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,482 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,482 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,483 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,485 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,485 even if it does not contain any `.py` files. 2026-05-13T19:10:53,486 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,486 directory, all directories are treated like packages. 2026-05-13T19:10:53,487 ******************************************************************************** 2026-05-13T19:10:53,487 !! 2026-05-13T19:10:53,488 check.warn(importable) 2026-05-13T19:10:53,488 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biscuit.tests' is absent from the `packages` configuration. 2026-05-13T19:10:53,488 !! 2026-05-13T19:10:53,489 ******************************************************************************** 2026-05-13T19:10:53,489 ############################ 2026-05-13T19:10:53,490 # Package would be ignored # 2026-05-13T19:10:53,490 ############################ 2026-05-13T19:10:53,491 Python recognizes 'multiqc.modules.biscuit.tests' as an importable package[^1], 2026-05-13T19:10:53,491 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,492 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,492 package, please make sure that 'multiqc.modules.biscuit.tests' is explicitly added 2026-05-13T19:10:53,492 to the `packages` configuration field. 2026-05-13T19:10:53,493 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,494 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,494 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,495 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,496 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,496 If you don't want 'multiqc.modules.biscuit.tests' to be distributed and are 2026-05-13T19:10:53,497 already explicitly excluding 'multiqc.modules.biscuit.tests' via 2026-05-13T19:10:53,497 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,498 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,498 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,499 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,500 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,501 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,502 even if it does not contain any `.py` files. 2026-05-13T19:10:53,502 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,503 directory, all directories are treated like packages. 2026-05-13T19:10:53,503 ******************************************************************************** 2026-05-13T19:10:53,504 !! 2026-05-13T19:10:53,504 check.warn(importable) 2026-05-13T19:10:53,505 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bismark' is absent from the `packages` configuration. 2026-05-13T19:10:53,505 !! 2026-05-13T19:10:53,506 ******************************************************************************** 2026-05-13T19:10:53,507 ############################ 2026-05-13T19:10:53,507 # Package would be ignored # 2026-05-13T19:10:53,508 ############################ 2026-05-13T19:10:53,508 Python recognizes 'multiqc.modules.bismark' as an importable package[^1], 2026-05-13T19:10:53,509 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,510 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,511 package, please make sure that 'multiqc.modules.bismark' is explicitly added 2026-05-13T19:10:53,511 to the `packages` configuration field. 2026-05-13T19:10:53,512 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,513 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,513 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,514 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,516 If you don't want 'multiqc.modules.bismark' to be distributed and are 2026-05-13T19:10:53,517 already explicitly excluding 'multiqc.modules.bismark' via 2026-05-13T19:10:53,518 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,518 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,519 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,520 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,521 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,523 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,523 even if it does not contain any `.py` files. 2026-05-13T19:10:53,524 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,524 directory, all directories are treated like packages. 2026-05-13T19:10:53,525 ******************************************************************************** 2026-05-13T19:10:53,526 !! 2026-05-13T19:10:53,527 check.warn(importable) 2026-05-13T19:10:53,527 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bowtie1' is absent from the `packages` configuration. 2026-05-13T19:10:53,528 !! 2026-05-13T19:10:53,529 ******************************************************************************** 2026-05-13T19:10:53,530 ############################ 2026-05-13T19:10:53,530 # Package would be ignored # 2026-05-13T19:10:53,531 ############################ 2026-05-13T19:10:53,531 Python recognizes 'multiqc.modules.bowtie1' as an importable package[^1], 2026-05-13T19:10:53,532 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,533 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,534 package, please make sure that 'multiqc.modules.bowtie1' is explicitly added 2026-05-13T19:10:53,534 to the `packages` configuration field. 2026-05-13T19:10:53,535 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,536 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,537 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,538 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,539 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,540 If you don't want 'multiqc.modules.bowtie1' to be distributed and are 2026-05-13T19:10:53,541 already explicitly excluding 'multiqc.modules.bowtie1' via 2026-05-13T19:10:53,541 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,542 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,543 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,544 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,545 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,547 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,547 even if it does not contain any `.py` files. 2026-05-13T19:10:53,548 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,549 directory, all directories are treated like packages. 2026-05-13T19:10:53,549 ******************************************************************************** 2026-05-13T19:10:53,550 !! 2026-05-13T19:10:53,551 check.warn(importable) 2026-05-13T19:10:53,551 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bowtie2' is absent from the `packages` configuration. 2026-05-13T19:10:53,552 !! 2026-05-13T19:10:53,553 ******************************************************************************** 2026-05-13T19:10:53,553 ############################ 2026-05-13T19:10:53,554 # Package would be ignored # 2026-05-13T19:10:53,554 ############################ 2026-05-13T19:10:53,555 Python recognizes 'multiqc.modules.bowtie2' as an importable package[^1], 2026-05-13T19:10:53,555 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,556 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,557 package, please make sure that 'multiqc.modules.bowtie2' is explicitly added 2026-05-13T19:10:53,557 to the `packages` configuration field. 2026-05-13T19:10:53,559 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,559 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,560 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,561 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,562 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,563 If you don't want 'multiqc.modules.bowtie2' to be distributed and are 2026-05-13T19:10:53,564 already explicitly excluding 'multiqc.modules.bowtie2' via 2026-05-13T19:10:53,564 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,565 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,565 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,567 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,568 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,569 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,570 even if it does not contain any `.py` files. 2026-05-13T19:10:53,571 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,571 directory, all directories are treated like packages. 2026-05-13T19:10:53,572 ******************************************************************************** 2026-05-13T19:10:53,573 !! 2026-05-13T19:10:53,573 check.warn(importable) 2026-05-13T19:10:53,574 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.busco' is absent from the `packages` configuration. 2026-05-13T19:10:53,575 !! 2026-05-13T19:10:53,576 ******************************************************************************** 2026-05-13T19:10:53,577 ############################ 2026-05-13T19:10:53,577 # Package would be ignored # 2026-05-13T19:10:53,578 ############################ 2026-05-13T19:10:53,578 Python recognizes 'multiqc.modules.busco' as an importable package[^1], 2026-05-13T19:10:53,579 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,580 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,580 package, please make sure that 'multiqc.modules.busco' is explicitly added 2026-05-13T19:10:53,581 to the `packages` configuration field. 2026-05-13T19:10:53,582 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,582 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,583 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,584 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,585 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,586 If you don't want 'multiqc.modules.busco' to be distributed and are 2026-05-13T19:10:53,586 already explicitly excluding 'multiqc.modules.busco' via 2026-05-13T19:10:53,587 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,587 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,588 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,589 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,590 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,592 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,592 even if it does not contain any `.py` files. 2026-05-13T19:10:53,593 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,593 directory, all directories are treated like packages. 2026-05-13T19:10:53,594 ******************************************************************************** 2026-05-13T19:10:53,595 !! 2026-05-13T19:10:53,596 check.warn(importable) 2026-05-13T19:10:53,596 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bustools' is absent from the `packages` configuration. 2026-05-13T19:10:53,597 !! 2026-05-13T19:10:53,598 ******************************************************************************** 2026-05-13T19:10:53,599 ############################ 2026-05-13T19:10:53,599 # Package would be ignored # 2026-05-13T19:10:53,600 ############################ 2026-05-13T19:10:53,600 Python recognizes 'multiqc.modules.bustools' as an importable package[^1], 2026-05-13T19:10:53,601 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,602 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,603 package, please make sure that 'multiqc.modules.bustools' is explicitly added 2026-05-13T19:10:53,603 to the `packages` configuration field. 2026-05-13T19:10:53,605 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,605 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,606 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,607 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,608 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,610 If you don't want 'multiqc.modules.bustools' to be distributed and are 2026-05-13T19:10:53,610 already explicitly excluding 'multiqc.modules.bustools' via 2026-05-13T19:10:53,611 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,611 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,611 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,612 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,613 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,614 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,614 even if it does not contain any `.py` files. 2026-05-13T19:10:53,615 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,615 directory, all directories are treated like packages. 2026-05-13T19:10:53,615 ******************************************************************************** 2026-05-13T19:10:53,616 !! 2026-05-13T19:10:53,616 check.warn(importable) 2026-05-13T19:10:53,617 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ccs' is absent from the `packages` configuration. 2026-05-13T19:10:53,617 !! 2026-05-13T19:10:53,618 ******************************************************************************** 2026-05-13T19:10:53,619 ############################ 2026-05-13T19:10:53,619 # Package would be ignored # 2026-05-13T19:10:53,619 ############################ 2026-05-13T19:10:53,620 Python recognizes 'multiqc.modules.ccs' as an importable package[^1], 2026-05-13T19:10:53,620 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,621 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,621 package, please make sure that 'multiqc.modules.ccs' is explicitly added 2026-05-13T19:10:53,622 to the `packages` configuration field. 2026-05-13T19:10:53,623 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,623 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,623 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,624 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,625 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,626 If you don't want 'multiqc.modules.ccs' to be distributed and are 2026-05-13T19:10:53,626 already explicitly excluding 'multiqc.modules.ccs' via 2026-05-13T19:10:53,627 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,627 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,628 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,628 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,629 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,630 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,631 even if it does not contain any `.py` files. 2026-05-13T19:10:53,631 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,632 directory, all directories are treated like packages. 2026-05-13T19:10:53,632 ******************************************************************************** 2026-05-13T19:10:53,633 !! 2026-05-13T19:10:53,633 check.warn(importable) 2026-05-13T19:10:53,634 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ccs.tests' is absent from the `packages` configuration. 2026-05-13T19:10:53,634 !! 2026-05-13T19:10:53,635 ******************************************************************************** 2026-05-13T19:10:53,635 ############################ 2026-05-13T19:10:53,636 # Package would be ignored # 2026-05-13T19:10:53,636 ############################ 2026-05-13T19:10:53,636 Python recognizes 'multiqc.modules.ccs.tests' as an importable package[^1], 2026-05-13T19:10:53,637 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,637 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,638 package, please make sure that 'multiqc.modules.ccs.tests' is explicitly added 2026-05-13T19:10:53,638 to the `packages` configuration field. 2026-05-13T19:10:53,639 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,639 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,639 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,640 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,641 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,642 If you don't want 'multiqc.modules.ccs.tests' to be distributed and are 2026-05-13T19:10:53,642 already explicitly excluding 'multiqc.modules.ccs.tests' via 2026-05-13T19:10:53,642 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,643 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,643 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,644 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,645 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,646 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,647 even if it does not contain any `.py` files. 2026-05-13T19:10:53,647 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,647 directory, all directories are treated like packages. 2026-05-13T19:10:53,648 ******************************************************************************** 2026-05-13T19:10:53,649 !! 2026-05-13T19:10:53,649 check.warn(importable) 2026-05-13T19:10:53,650 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cellranger' is absent from the `packages` configuration. 2026-05-13T19:10:53,650 !! 2026-05-13T19:10:53,651 ******************************************************************************** 2026-05-13T19:10:53,651 ############################ 2026-05-13T19:10:53,652 # Package would be ignored # 2026-05-13T19:10:53,652 ############################ 2026-05-13T19:10:53,652 Python recognizes 'multiqc.modules.cellranger' as an importable package[^1], 2026-05-13T19:10:53,653 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,654 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,654 package, please make sure that 'multiqc.modules.cellranger' is explicitly added 2026-05-13T19:10:53,655 to the `packages` configuration field. 2026-05-13T19:10:53,656 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,656 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,656 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,657 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,658 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,658 If you don't want 'multiqc.modules.cellranger' to be distributed and are 2026-05-13T19:10:53,659 already explicitly excluding 'multiqc.modules.cellranger' via 2026-05-13T19:10:53,659 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,659 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,660 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,660 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,661 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,662 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,662 even if it does not contain any `.py` files. 2026-05-13T19:10:53,663 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,663 directory, all directories are treated like packages. 2026-05-13T19:10:53,664 ******************************************************************************** 2026-05-13T19:10:53,664 !! 2026-05-13T19:10:53,665 check.warn(importable) 2026-05-13T19:10:53,665 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cellranger_arc' is absent from the `packages` configuration. 2026-05-13T19:10:53,665 !! 2026-05-13T19:10:53,666 ******************************************************************************** 2026-05-13T19:10:53,667 ############################ 2026-05-13T19:10:53,667 # Package would be ignored # 2026-05-13T19:10:53,668 ############################ 2026-05-13T19:10:53,668 Python recognizes 'multiqc.modules.cellranger_arc' as an importable package[^1], 2026-05-13T19:10:53,668 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,669 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,670 package, please make sure that 'multiqc.modules.cellranger_arc' is explicitly added 2026-05-13T19:10:53,670 to the `packages` configuration field. 2026-05-13T19:10:53,671 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,672 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,672 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,673 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,674 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,675 If you don't want 'multiqc.modules.cellranger_arc' to be distributed and are 2026-05-13T19:10:53,675 already explicitly excluding 'multiqc.modules.cellranger_arc' via 2026-05-13T19:10:53,676 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,676 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,677 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,678 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,679 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,680 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,680 even if it does not contain any `.py` files. 2026-05-13T19:10:53,681 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,681 directory, all directories are treated like packages. 2026-05-13T19:10:53,681 ******************************************************************************** 2026-05-13T19:10:53,682 !! 2026-05-13T19:10:53,683 check.warn(importable) 2026-05-13T19:10:53,683 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cellranger_arc.tests' is absent from the `packages` configuration. 2026-05-13T19:10:53,683 !! 2026-05-13T19:10:53,684 ******************************************************************************** 2026-05-13T19:10:53,684 ############################ 2026-05-13T19:10:53,685 # Package would be ignored # 2026-05-13T19:10:53,685 ############################ 2026-05-13T19:10:53,685 Python recognizes 'multiqc.modules.cellranger_arc.tests' as an importable package[^1], 2026-05-13T19:10:53,686 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,686 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,687 package, please make sure that 'multiqc.modules.cellranger_arc.tests' is explicitly added 2026-05-13T19:10:53,687 to the `packages` configuration field. 2026-05-13T19:10:53,688 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,689 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,689 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,690 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,691 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,692 If you don't want 'multiqc.modules.cellranger_arc.tests' to be distributed and are 2026-05-13T19:10:53,692 already explicitly excluding 'multiqc.modules.cellranger_arc.tests' via 2026-05-13T19:10:53,692 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,693 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,693 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,694 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,695 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,696 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,697 even if it does not contain any `.py` files. 2026-05-13T19:10:53,697 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,697 directory, all directories are treated like packages. 2026-05-13T19:10:53,698 ******************************************************************************** 2026-05-13T19:10:53,699 !! 2026-05-13T19:10:53,699 check.warn(importable) 2026-05-13T19:10:53,700 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cells2stats' is absent from the `packages` configuration. 2026-05-13T19:10:53,700 !! 2026-05-13T19:10:53,701 ******************************************************************************** 2026-05-13T19:10:53,702 ############################ 2026-05-13T19:10:53,702 # Package would be ignored # 2026-05-13T19:10:53,703 ############################ 2026-05-13T19:10:53,704 Python recognizes 'multiqc.modules.cells2stats' as an importable package[^1], 2026-05-13T19:10:53,704 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,705 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,706 package, please make sure that 'multiqc.modules.cells2stats' is explicitly added 2026-05-13T19:10:53,706 to the `packages` configuration field. 2026-05-13T19:10:53,707 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,707 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,708 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,708 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,709 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,710 If you don't want 'multiqc.modules.cells2stats' to be distributed and are 2026-05-13T19:10:53,710 already explicitly excluding 'multiqc.modules.cells2stats' via 2026-05-13T19:10:53,711 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,711 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,711 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,712 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,713 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,714 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,715 even if it does not contain any `.py` files. 2026-05-13T19:10:53,715 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,716 directory, all directories are treated like packages. 2026-05-13T19:10:53,716 ******************************************************************************** 2026-05-13T19:10:53,717 !! 2026-05-13T19:10:53,717 check.warn(importable) 2026-05-13T19:10:53,718 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.checkatlas' is absent from the `packages` configuration. 2026-05-13T19:10:53,718 !! 2026-05-13T19:10:53,719 ******************************************************************************** 2026-05-13T19:10:53,720 ############################ 2026-05-13T19:10:53,720 # Package would be ignored # 2026-05-13T19:10:53,721 ############################ 2026-05-13T19:10:53,721 Python recognizes 'multiqc.modules.checkatlas' as an importable package[^1], 2026-05-13T19:10:53,722 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,723 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,723 package, please make sure that 'multiqc.modules.checkatlas' is explicitly added 2026-05-13T19:10:53,723 to the `packages` configuration field. 2026-05-13T19:10:53,724 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,725 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,725 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,726 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,727 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,728 If you don't want 'multiqc.modules.checkatlas' to be distributed and are 2026-05-13T19:10:53,728 already explicitly excluding 'multiqc.modules.checkatlas' via 2026-05-13T19:10:53,729 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,729 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,729 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,730 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,732 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,732 even if it does not contain any `.py` files. 2026-05-13T19:10:53,733 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,733 directory, all directories are treated like packages. 2026-05-13T19:10:53,733 ******************************************************************************** 2026-05-13T19:10:53,734 !! 2026-05-13T19:10:53,735 check.warn(importable) 2026-05-13T19:10:53,735 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.checkm' is absent from the `packages` configuration. 2026-05-13T19:10:53,735 !! 2026-05-13T19:10:53,736 ******************************************************************************** 2026-05-13T19:10:53,737 ############################ 2026-05-13T19:10:53,737 # Package would be ignored # 2026-05-13T19:10:53,737 ############################ 2026-05-13T19:10:53,738 Python recognizes 'multiqc.modules.checkm' as an importable package[^1], 2026-05-13T19:10:53,738 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,739 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,740 package, please make sure that 'multiqc.modules.checkm' is explicitly added 2026-05-13T19:10:53,740 to the `packages` configuration field. 2026-05-13T19:10:53,741 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,742 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,743 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,744 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,745 If you don't want 'multiqc.modules.checkm' to be distributed and are 2026-05-13T19:10:53,745 already explicitly excluding 'multiqc.modules.checkm' via 2026-05-13T19:10:53,746 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,746 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,747 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,748 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,749 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,750 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,750 even if it does not contain any `.py` files. 2026-05-13T19:10:53,751 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,751 directory, all directories are treated like packages. 2026-05-13T19:10:53,752 ******************************************************************************** 2026-05-13T19:10:53,752 !! 2026-05-13T19:10:53,753 check.warn(importable) 2026-05-13T19:10:53,753 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.checkm2' is absent from the `packages` configuration. 2026-05-13T19:10:53,754 !! 2026-05-13T19:10:53,755 ******************************************************************************** 2026-05-13T19:10:53,755 ############################ 2026-05-13T19:10:53,755 # Package would be ignored # 2026-05-13T19:10:53,756 ############################ 2026-05-13T19:10:53,756 Python recognizes 'multiqc.modules.checkm2' as an importable package[^1], 2026-05-13T19:10:53,756 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,757 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,758 package, please make sure that 'multiqc.modules.checkm2' is explicitly added 2026-05-13T19:10:53,758 to the `packages` configuration field. 2026-05-13T19:10:53,759 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,759 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,759 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,760 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,762 If you don't want 'multiqc.modules.checkm2' to be distributed and are 2026-05-13T19:10:53,762 already explicitly excluding 'multiqc.modules.checkm2' via 2026-05-13T19:10:53,763 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,763 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,764 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,767 even if it does not contain any `.py` files. 2026-05-13T19:10:53,767 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,768 directory, all directories are treated like packages. 2026-05-13T19:10:53,768 ******************************************************************************** 2026-05-13T19:10:53,769 !! 2026-05-13T19:10:53,769 check.warn(importable) 2026-05-13T19:10:53,770 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.checkqc' is absent from the `packages` configuration. 2026-05-13T19:10:53,770 !! 2026-05-13T19:10:53,771 ******************************************************************************** 2026-05-13T19:10:53,771 ############################ 2026-05-13T19:10:53,772 # Package would be ignored # 2026-05-13T19:10:53,772 ############################ 2026-05-13T19:10:53,773 Python recognizes 'multiqc.modules.checkqc' as an importable package[^1], 2026-05-13T19:10:53,773 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,774 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,774 package, please make sure that 'multiqc.modules.checkqc' is explicitly added 2026-05-13T19:10:53,775 to the `packages` configuration field. 2026-05-13T19:10:53,776 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,776 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,776 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,777 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,778 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,779 If you don't want 'multiqc.modules.checkqc' to be distributed and are 2026-05-13T19:10:53,779 already explicitly excluding 'multiqc.modules.checkqc' via 2026-05-13T19:10:53,779 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,780 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,780 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,781 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,781 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,783 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,783 even if it does not contain any `.py` files. 2026-05-13T19:10:53,784 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,784 directory, all directories are treated like packages. 2026-05-13T19:10:53,785 ******************************************************************************** 2026-05-13T19:10:53,785 !! 2026-05-13T19:10:53,786 check.warn(importable) 2026-05-13T19:10:53,786 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.clipandmerge' is absent from the `packages` configuration. 2026-05-13T19:10:53,787 !! 2026-05-13T19:10:53,787 ******************************************************************************** 2026-05-13T19:10:53,788 ############################ 2026-05-13T19:10:53,788 # Package would be ignored # 2026-05-13T19:10:53,789 ############################ 2026-05-13T19:10:53,789 Python recognizes 'multiqc.modules.clipandmerge' as an importable package[^1], 2026-05-13T19:10:53,790 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,790 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,791 package, please make sure that 'multiqc.modules.clipandmerge' is explicitly added 2026-05-13T19:10:53,791 to the `packages` configuration field. 2026-05-13T19:10:53,792 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,792 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,793 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,794 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,795 If you don't want 'multiqc.modules.clipandmerge' to be distributed and are 2026-05-13T19:10:53,796 already explicitly excluding 'multiqc.modules.clipandmerge' via 2026-05-13T19:10:53,796 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,797 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,797 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,798 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,799 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,801 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,801 even if it does not contain any `.py` files. 2026-05-13T19:10:53,802 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,802 directory, all directories are treated like packages. 2026-05-13T19:10:53,802 ******************************************************************************** 2026-05-13T19:10:53,803 !! 2026-05-13T19:10:53,803 check.warn(importable) 2026-05-13T19:10:53,804 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.clusterflow' is absent from the `packages` configuration. 2026-05-13T19:10:53,804 !! 2026-05-13T19:10:53,805 ******************************************************************************** 2026-05-13T19:10:53,806 ############################ 2026-05-13T19:10:53,806 # Package would be ignored # 2026-05-13T19:10:53,806 ############################ 2026-05-13T19:10:53,807 Python recognizes 'multiqc.modules.clusterflow' as an importable package[^1], 2026-05-13T19:10:53,807 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,808 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,808 package, please make sure that 'multiqc.modules.clusterflow' is explicitly added 2026-05-13T19:10:53,809 to the `packages` configuration field. 2026-05-13T19:10:53,809 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,810 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,810 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,811 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,812 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,813 If you don't want 'multiqc.modules.clusterflow' to be distributed and are 2026-05-13T19:10:53,813 already explicitly excluding 'multiqc.modules.clusterflow' via 2026-05-13T19:10:53,814 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,814 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,815 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,815 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,816 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,818 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,818 even if it does not contain any `.py` files. 2026-05-13T19:10:53,819 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,819 directory, all directories are treated like packages. 2026-05-13T19:10:53,819 ******************************************************************************** 2026-05-13T19:10:53,820 !! 2026-05-13T19:10:53,821 check.warn(importable) 2026-05-13T19:10:53,821 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.conpair' is absent from the `packages` configuration. 2026-05-13T19:10:53,822 !! 2026-05-13T19:10:53,822 ******************************************************************************** 2026-05-13T19:10:53,823 ############################ 2026-05-13T19:10:53,823 # Package would be ignored # 2026-05-13T19:10:53,824 ############################ 2026-05-13T19:10:53,824 Python recognizes 'multiqc.modules.conpair' as an importable package[^1], 2026-05-13T19:10:53,825 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,826 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,826 package, please make sure that 'multiqc.modules.conpair' is explicitly added 2026-05-13T19:10:53,826 to the `packages` configuration field. 2026-05-13T19:10:53,827 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,827 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,828 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,829 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,829 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,830 If you don't want 'multiqc.modules.conpair' to be distributed and are 2026-05-13T19:10:53,830 already explicitly excluding 'multiqc.modules.conpair' via 2026-05-13T19:10:53,831 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,831 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,832 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,832 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,833 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,834 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,835 even if it does not contain any `.py` files. 2026-05-13T19:10:53,835 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,835 directory, all directories are treated like packages. 2026-05-13T19:10:53,836 ******************************************************************************** 2026-05-13T19:10:53,837 !! 2026-05-13T19:10:53,837 check.warn(importable) 2026-05-13T19:10:53,837 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cutadapt' is absent from the `packages` configuration. 2026-05-13T19:10:53,838 !! 2026-05-13T19:10:53,839 ******************************************************************************** 2026-05-13T19:10:53,839 ############################ 2026-05-13T19:10:53,840 # Package would be ignored # 2026-05-13T19:10:53,840 ############################ 2026-05-13T19:10:53,840 Python recognizes 'multiqc.modules.cutadapt' as an importable package[^1], 2026-05-13T19:10:53,841 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,842 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,842 package, please make sure that 'multiqc.modules.cutadapt' is explicitly added 2026-05-13T19:10:53,843 to the `packages` configuration field. 2026-05-13T19:10:53,843 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,844 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,844 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,845 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,846 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,847 If you don't want 'multiqc.modules.cutadapt' to be distributed and are 2026-05-13T19:10:53,848 already explicitly excluding 'multiqc.modules.cutadapt' via 2026-05-13T19:10:53,848 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,849 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,849 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,850 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,851 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,852 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,852 even if it does not contain any `.py` files. 2026-05-13T19:10:53,853 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,853 directory, all directories are treated like packages. 2026-05-13T19:10:53,853 ******************************************************************************** 2026-05-13T19:10:53,854 !! 2026-05-13T19:10:53,855 check.warn(importable) 2026-05-13T19:10:53,855 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.damageprofiler' is absent from the `packages` configuration. 2026-05-13T19:10:53,855 !! 2026-05-13T19:10:53,856 ******************************************************************************** 2026-05-13T19:10:53,856 ############################ 2026-05-13T19:10:53,857 # Package would be ignored # 2026-05-13T19:10:53,857 ############################ 2026-05-13T19:10:53,858 Python recognizes 'multiqc.modules.damageprofiler' as an importable package[^1], 2026-05-13T19:10:53,858 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,859 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,859 package, please make sure that 'multiqc.modules.damageprofiler' is explicitly added 2026-05-13T19:10:53,860 to the `packages` configuration field. 2026-05-13T19:10:53,861 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,861 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,861 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,862 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,863 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,864 If you don't want 'multiqc.modules.damageprofiler' to be distributed and are 2026-05-13T19:10:53,864 already explicitly excluding 'multiqc.modules.damageprofiler' via 2026-05-13T19:10:53,865 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,865 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,866 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,866 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,867 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,869 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,869 even if it does not contain any `.py` files. 2026-05-13T19:10:53,870 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,870 directory, all directories are treated like packages. 2026-05-13T19:10:53,871 ******************************************************************************** 2026-05-13T19:10:53,873 !! 2026-05-13T19:10:53,874 check.warn(importable) 2026-05-13T19:10:53,874 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.deacon' is absent from the `packages` configuration. 2026-05-13T19:10:53,875 !! 2026-05-13T19:10:53,876 ******************************************************************************** 2026-05-13T19:10:53,876 ############################ 2026-05-13T19:10:53,876 # Package would be ignored # 2026-05-13T19:10:53,877 ############################ 2026-05-13T19:10:53,877 Python recognizes 'multiqc.modules.deacon' as an importable package[^1], 2026-05-13T19:10:53,877 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,878 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,879 package, please make sure that 'multiqc.modules.deacon' is explicitly added 2026-05-13T19:10:53,879 to the `packages` configuration field. 2026-05-13T19:10:53,880 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,880 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,880 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,881 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,882 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,883 If you don't want 'multiqc.modules.deacon' to be distributed and are 2026-05-13T19:10:53,883 already explicitly excluding 'multiqc.modules.deacon' via 2026-05-13T19:10:53,884 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,884 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,885 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,885 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,886 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,888 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,888 even if it does not contain any `.py` files. 2026-05-13T19:10:53,889 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,889 directory, all directories are treated like packages. 2026-05-13T19:10:53,890 ******************************************************************************** 2026-05-13T19:10:53,890 !! 2026-05-13T19:10:53,891 check.warn(importable) 2026-05-13T19:10:53,891 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dedup' is absent from the `packages` configuration. 2026-05-13T19:10:53,892 !! 2026-05-13T19:10:53,892 ******************************************************************************** 2026-05-13T19:10:53,893 ############################ 2026-05-13T19:10:53,893 # Package would be ignored # 2026-05-13T19:10:53,894 ############################ 2026-05-13T19:10:53,894 Python recognizes 'multiqc.modules.dedup' as an importable package[^1], 2026-05-13T19:10:53,895 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,896 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,896 package, please make sure that 'multiqc.modules.dedup' is explicitly added 2026-05-13T19:10:53,897 to the `packages` configuration field. 2026-05-13T19:10:53,898 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,898 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,899 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,899 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,900 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,901 If you don't want 'multiqc.modules.dedup' to be distributed and are 2026-05-13T19:10:53,902 already explicitly excluding 'multiqc.modules.dedup' via 2026-05-13T19:10:53,902 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,902 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,903 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,903 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,904 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,905 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,905 even if it does not contain any `.py` files. 2026-05-13T19:10:53,906 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,906 directory, all directories are treated like packages. 2026-05-13T19:10:53,907 ******************************************************************************** 2026-05-13T19:10:53,907 !! 2026-05-13T19:10:53,908 check.warn(importable) 2026-05-13T19:10:53,908 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.deeptools' is absent from the `packages` configuration. 2026-05-13T19:10:53,908 !! 2026-05-13T19:10:53,909 ******************************************************************************** 2026-05-13T19:10:53,910 ############################ 2026-05-13T19:10:53,910 # Package would be ignored # 2026-05-13T19:10:53,911 ############################ 2026-05-13T19:10:53,911 Python recognizes 'multiqc.modules.deeptools' as an importable package[^1], 2026-05-13T19:10:53,911 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,912 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,913 package, please make sure that 'multiqc.modules.deeptools' is explicitly added 2026-05-13T19:10:53,913 to the `packages` configuration field. 2026-05-13T19:10:53,914 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,914 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,915 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,916 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,916 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,917 If you don't want 'multiqc.modules.deeptools' to be distributed and are 2026-05-13T19:10:53,918 already explicitly excluding 'multiqc.modules.deeptools' via 2026-05-13T19:10:53,918 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,919 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,919 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,920 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,921 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,922 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,923 even if it does not contain any `.py` files. 2026-05-13T19:10:53,923 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,924 directory, all directories are treated like packages. 2026-05-13T19:10:53,924 ******************************************************************************** 2026-05-13T19:10:53,925 !! 2026-05-13T19:10:53,925 check.warn(importable) 2026-05-13T19:10:53,926 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.diamond' is absent from the `packages` configuration. 2026-05-13T19:10:53,926 !! 2026-05-13T19:10:53,927 ******************************************************************************** 2026-05-13T19:10:53,927 ############################ 2026-05-13T19:10:53,927 # Package would be ignored # 2026-05-13T19:10:53,928 ############################ 2026-05-13T19:10:53,928 Python recognizes 'multiqc.modules.diamond' as an importable package[^1], 2026-05-13T19:10:53,928 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,929 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,929 package, please make sure that 'multiqc.modules.diamond' is explicitly added 2026-05-13T19:10:53,930 to the `packages` configuration field. 2026-05-13T19:10:53,931 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,931 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,931 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,932 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,933 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,934 If you don't want 'multiqc.modules.diamond' to be distributed and are 2026-05-13T19:10:53,934 already explicitly excluding 'multiqc.modules.diamond' via 2026-05-13T19:10:53,935 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,935 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,935 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,936 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,937 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,938 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,939 even if it does not contain any `.py` files. 2026-05-13T19:10:53,941 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,941 directory, all directories are treated like packages. 2026-05-13T19:10:53,942 ******************************************************************************** 2026-05-13T19:10:53,942 !! 2026-05-13T19:10:53,943 check.warn(importable) 2026-05-13T19:10:53,943 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.disambiguate' is absent from the `packages` configuration. 2026-05-13T19:10:53,944 !! 2026-05-13T19:10:53,945 ******************************************************************************** 2026-05-13T19:10:53,945 ############################ 2026-05-13T19:10:53,945 # Package would be ignored # 2026-05-13T19:10:53,946 ############################ 2026-05-13T19:10:53,946 Python recognizes 'multiqc.modules.disambiguate' as an importable package[^1], 2026-05-13T19:10:53,947 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,948 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,948 package, please make sure that 'multiqc.modules.disambiguate' is explicitly added 2026-05-13T19:10:53,948 to the `packages` configuration field. 2026-05-13T19:10:53,950 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,950 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,950 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,951 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,952 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,952 If you don't want 'multiqc.modules.disambiguate' to be distributed and are 2026-05-13T19:10:53,953 already explicitly excluding 'multiqc.modules.disambiguate' via 2026-05-13T19:10:53,953 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,953 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,954 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,954 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,955 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,956 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,957 even if it does not contain any `.py` files. 2026-05-13T19:10:53,957 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,957 directory, all directories are treated like packages. 2026-05-13T19:10:53,958 ******************************************************************************** 2026-05-13T19:10:53,958 !! 2026-05-13T19:10:53,959 check.warn(importable) 2026-05-13T19:10:53,959 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen' is absent from the `packages` configuration. 2026-05-13T19:10:53,960 !! 2026-05-13T19:10:53,960 ******************************************************************************** 2026-05-13T19:10:53,961 ############################ 2026-05-13T19:10:53,961 # Package would be ignored # 2026-05-13T19:10:53,962 ############################ 2026-05-13T19:10:53,962 Python recognizes 'multiqc.modules.dragen' as an importable package[^1], 2026-05-13T19:10:53,962 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,963 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,964 package, please make sure that 'multiqc.modules.dragen' is explicitly added 2026-05-13T19:10:53,964 to the `packages` configuration field. 2026-05-13T19:10:53,965 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,965 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,966 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,967 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,967 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,968 If you don't want 'multiqc.modules.dragen' to be distributed and are 2026-05-13T19:10:53,969 already explicitly excluding 'multiqc.modules.dragen' via 2026-05-13T19:10:53,969 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,970 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,970 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,971 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,972 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,973 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,973 even if it does not contain any `.py` files. 2026-05-13T19:10:53,974 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,974 directory, all directories are treated like packages. 2026-05-13T19:10:53,974 ******************************************************************************** 2026-05-13T19:10:53,975 !! 2026-05-13T19:10:53,975 check.warn(importable) 2026-05-13T19:10:53,976 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen.tests' is absent from the `packages` configuration. 2026-05-13T19:10:53,976 !! 2026-05-13T19:10:53,977 ******************************************************************************** 2026-05-13T19:10:53,977 ############################ 2026-05-13T19:10:53,977 # Package would be ignored # 2026-05-13T19:10:53,978 ############################ 2026-05-13T19:10:53,978 Python recognizes 'multiqc.modules.dragen.tests' as an importable package[^1], 2026-05-13T19:10:53,979 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,979 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,980 package, please make sure that 'multiqc.modules.dragen.tests' is explicitly added 2026-05-13T19:10:53,980 to the `packages` configuration field. 2026-05-13T19:10:53,981 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,981 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,982 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,982 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,983 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:53,984 If you don't want 'multiqc.modules.dragen.tests' to be distributed and are 2026-05-13T19:10:53,984 already explicitly excluding 'multiqc.modules.dragen.tests' via 2026-05-13T19:10:53,985 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:53,985 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:53,985 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:53,986 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:53,987 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:53,988 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:53,989 even if it does not contain any `.py` files. 2026-05-13T19:10:53,989 On the other hand, currently there is no concept of package data 2026-05-13T19:10:53,990 directory, all directories are treated like packages. 2026-05-13T19:10:53,990 ******************************************************************************** 2026-05-13T19:10:53,991 !! 2026-05-13T19:10:53,991 check.warn(importable) 2026-05-13T19:10:53,992 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen_fastqc' is absent from the `packages` configuration. 2026-05-13T19:10:53,992 !! 2026-05-13T19:10:53,993 ******************************************************************************** 2026-05-13T19:10:53,993 ############################ 2026-05-13T19:10:53,994 # Package would be ignored # 2026-05-13T19:10:53,994 ############################ 2026-05-13T19:10:53,995 Python recognizes 'multiqc.modules.dragen_fastqc' as an importable package[^1], 2026-05-13T19:10:53,995 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:53,996 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:53,996 package, please make sure that 'multiqc.modules.dragen_fastqc' is explicitly added 2026-05-13T19:10:53,997 to the `packages` configuration field. 2026-05-13T19:10:53,997 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:53,998 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:53,998 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:53,999 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:53,999 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,000 If you don't want 'multiqc.modules.dragen_fastqc' to be distributed and are 2026-05-13T19:10:54,000 already explicitly excluding 'multiqc.modules.dragen_fastqc' via 2026-05-13T19:10:54,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,001 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,002 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,004 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,005 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,006 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,007 even if it does not contain any `.py` files. 2026-05-13T19:10:54,007 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,007 directory, all directories are treated like packages. 2026-05-13T19:10:54,008 ******************************************************************************** 2026-05-13T19:10:54,009 !! 2026-05-13T19:10:54,009 check.warn(importable) 2026-05-13T19:10:54,010 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen_fastqc.assets.js' is absent from the `packages` configuration. 2026-05-13T19:10:54,010 !! 2026-05-13T19:10:54,011 ******************************************************************************** 2026-05-13T19:10:54,011 ############################ 2026-05-13T19:10:54,012 # Package would be ignored # 2026-05-13T19:10:54,012 ############################ 2026-05-13T19:10:54,013 Python recognizes 'multiqc.modules.dragen_fastqc.assets.js' as an importable package[^1], 2026-05-13T19:10:54,013 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,014 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,014 package, please make sure that 'multiqc.modules.dragen_fastqc.assets.js' is explicitly added 2026-05-13T19:10:54,015 to the `packages` configuration field. 2026-05-13T19:10:54,016 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,016 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,016 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,017 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,018 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,019 If you don't want 'multiqc.modules.dragen_fastqc.assets.js' to be distributed and are 2026-05-13T19:10:54,019 already explicitly excluding 'multiqc.modules.dragen_fastqc.assets.js' via 2026-05-13T19:10:54,020 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,020 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,021 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,021 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,022 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,023 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,023 even if it does not contain any `.py` files. 2026-05-13T19:10:54,024 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,024 directory, all directories are treated like packages. 2026-05-13T19:10:54,025 ******************************************************************************** 2026-05-13T19:10:54,025 !! 2026-05-13T19:10:54,026 check.warn(importable) 2026-05-13T19:10:54,026 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.eigenstratdatabasetools' is absent from the `packages` configuration. 2026-05-13T19:10:54,026 !! 2026-05-13T19:10:54,027 ******************************************************************************** 2026-05-13T19:10:54,027 ############################ 2026-05-13T19:10:54,028 # Package would be ignored # 2026-05-13T19:10:54,028 ############################ 2026-05-13T19:10:54,029 Python recognizes 'multiqc.modules.eigenstratdatabasetools' as an importable package[^1], 2026-05-13T19:10:54,029 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,030 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,030 package, please make sure that 'multiqc.modules.eigenstratdatabasetools' is explicitly added 2026-05-13T19:10:54,031 to the `packages` configuration field. 2026-05-13T19:10:54,032 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,032 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,032 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,033 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,034 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,035 If you don't want 'multiqc.modules.eigenstratdatabasetools' to be distributed and are 2026-05-13T19:10:54,035 already explicitly excluding 'multiqc.modules.eigenstratdatabasetools' via 2026-05-13T19:10:54,036 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,036 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,036 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,037 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,038 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,040 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,040 even if it does not contain any `.py` files. 2026-05-13T19:10:54,041 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,041 directory, all directories are treated like packages. 2026-05-13T19:10:54,042 ******************************************************************************** 2026-05-13T19:10:54,043 !! 2026-05-13T19:10:54,044 check.warn(importable) 2026-05-13T19:10:54,044 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastp' is absent from the `packages` configuration. 2026-05-13T19:10:54,045 !! 2026-05-13T19:10:54,046 ******************************************************************************** 2026-05-13T19:10:54,046 ############################ 2026-05-13T19:10:54,046 # Package would be ignored # 2026-05-13T19:10:54,047 ############################ 2026-05-13T19:10:54,047 Python recognizes 'multiqc.modules.fastp' as an importable package[^1], 2026-05-13T19:10:54,048 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,048 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,049 package, please make sure that 'multiqc.modules.fastp' is explicitly added 2026-05-13T19:10:54,049 to the `packages` configuration field. 2026-05-13T19:10:54,050 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,050 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,050 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,051 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,052 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,053 If you don't want 'multiqc.modules.fastp' to be distributed and are 2026-05-13T19:10:54,053 already explicitly excluding 'multiqc.modules.fastp' via 2026-05-13T19:10:54,054 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,054 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,055 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,055 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,056 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,058 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,058 even if it does not contain any `.py` files. 2026-05-13T19:10:54,059 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,059 directory, all directories are treated like packages. 2026-05-13T19:10:54,059 ******************************************************************************** 2026-05-13T19:10:54,060 !! 2026-05-13T19:10:54,061 check.warn(importable) 2026-05-13T19:10:54,061 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastq_screen' is absent from the `packages` configuration. 2026-05-13T19:10:54,062 !! 2026-05-13T19:10:54,062 ******************************************************************************** 2026-05-13T19:10:54,063 ############################ 2026-05-13T19:10:54,063 # Package would be ignored # 2026-05-13T19:10:54,064 ############################ 2026-05-13T19:10:54,064 Python recognizes 'multiqc.modules.fastq_screen' as an importable package[^1], 2026-05-13T19:10:54,064 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,065 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,066 package, please make sure that 'multiqc.modules.fastq_screen' is explicitly added 2026-05-13T19:10:54,066 to the `packages` configuration field. 2026-05-13T19:10:54,067 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,067 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,068 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,068 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,069 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,072 If you don't want 'multiqc.modules.fastq_screen' to be distributed and are 2026-05-13T19:10:54,072 already explicitly excluding 'multiqc.modules.fastq_screen' via 2026-05-13T19:10:54,072 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,073 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,073 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,074 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,075 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,076 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,076 even if it does not contain any `.py` files. 2026-05-13T19:10:54,076 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,077 directory, all directories are treated like packages. 2026-05-13T19:10:54,077 ******************************************************************************** 2026-05-13T19:10:54,078 !! 2026-05-13T19:10:54,078 check.warn(importable) 2026-05-13T19:10:54,079 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc' is absent from the `packages` configuration. 2026-05-13T19:10:54,079 !! 2026-05-13T19:10:54,080 ******************************************************************************** 2026-05-13T19:10:54,080 ############################ 2026-05-13T19:10:54,081 # Package would be ignored # 2026-05-13T19:10:54,081 ############################ 2026-05-13T19:10:54,082 Python recognizes 'multiqc.modules.fastqc' as an importable package[^1], 2026-05-13T19:10:54,082 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,083 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,083 package, please make sure that 'multiqc.modules.fastqc' is explicitly added 2026-05-13T19:10:54,084 to the `packages` configuration field. 2026-05-13T19:10:54,084 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,085 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,085 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,086 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,087 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,088 If you don't want 'multiqc.modules.fastqc' to be distributed and are 2026-05-13T19:10:54,088 already explicitly excluding 'multiqc.modules.fastqc' via 2026-05-13T19:10:54,089 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,089 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,090 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,090 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,091 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,093 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,093 even if it does not contain any `.py` files. 2026-05-13T19:10:54,093 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,094 directory, all directories are treated like packages. 2026-05-13T19:10:54,094 ******************************************************************************** 2026-05-13T19:10:54,095 !! 2026-05-13T19:10:54,095 check.warn(importable) 2026-05-13T19:10:54,095 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.assets.css' is absent from the `packages` configuration. 2026-05-13T19:10:54,095 !! 2026-05-13T19:10:54,096 ******************************************************************************** 2026-05-13T19:10:54,096 ############################ 2026-05-13T19:10:54,097 # Package would be ignored # 2026-05-13T19:10:54,097 ############################ 2026-05-13T19:10:54,098 Python recognizes 'multiqc.modules.fastqc.assets.css' as an importable package[^1], 2026-05-13T19:10:54,098 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,099 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,099 package, please make sure that 'multiqc.modules.fastqc.assets.css' is explicitly added 2026-05-13T19:10:54,100 to the `packages` configuration field. 2026-05-13T19:10:54,100 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,101 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,101 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,102 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,103 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,104 If you don't want 'multiqc.modules.fastqc.assets.css' to be distributed and are 2026-05-13T19:10:54,104 already explicitly excluding 'multiqc.modules.fastqc.assets.css' via 2026-05-13T19:10:54,104 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,105 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,105 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,106 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,107 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,108 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,109 even if it does not contain any `.py` files. 2026-05-13T19:10:54,109 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,110 directory, all directories are treated like packages. 2026-05-13T19:10:54,110 ******************************************************************************** 2026-05-13T19:10:54,111 !! 2026-05-13T19:10:54,111 check.warn(importable) 2026-05-13T19:10:54,112 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.assets.js' is absent from the `packages` configuration. 2026-05-13T19:10:54,112 !! 2026-05-13T19:10:54,113 ******************************************************************************** 2026-05-13T19:10:54,113 ############################ 2026-05-13T19:10:54,114 # Package would be ignored # 2026-05-13T19:10:54,114 ############################ 2026-05-13T19:10:54,115 Python recognizes 'multiqc.modules.fastqc.assets.js' as an importable package[^1], 2026-05-13T19:10:54,115 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,116 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,116 package, please make sure that 'multiqc.modules.fastqc.assets.js' is explicitly added 2026-05-13T19:10:54,116 to the `packages` configuration field. 2026-05-13T19:10:54,117 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,118 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,118 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,119 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,119 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,120 If you don't want 'multiqc.modules.fastqc.assets.js' to be distributed and are 2026-05-13T19:10:54,120 already explicitly excluding 'multiqc.modules.fastqc.assets.js' via 2026-05-13T19:10:54,121 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,121 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,122 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,122 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,123 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,124 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,125 even if it does not contain any `.py` files. 2026-05-13T19:10:54,125 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,126 directory, all directories are treated like packages. 2026-05-13T19:10:54,126 ******************************************************************************** 2026-05-13T19:10:54,127 !! 2026-05-13T19:10:54,127 check.warn(importable) 2026-05-13T19:10:54,128 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.fastqc_theoretical_gc' is absent from the `packages` configuration. 2026-05-13T19:10:54,128 !! 2026-05-13T19:10:54,129 ******************************************************************************** 2026-05-13T19:10:54,129 ############################ 2026-05-13T19:10:54,130 # Package would be ignored # 2026-05-13T19:10:54,130 ############################ 2026-05-13T19:10:54,131 Python recognizes 'multiqc.modules.fastqc.fastqc_theoretical_gc' as an importable package[^1], 2026-05-13T19:10:54,131 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,132 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,132 package, please make sure that 'multiqc.modules.fastqc.fastqc_theoretical_gc' is explicitly added 2026-05-13T19:10:54,133 to the `packages` configuration field. 2026-05-13T19:10:54,134 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,134 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,135 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,136 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,137 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,138 If you don't want 'multiqc.modules.fastqc.fastqc_theoretical_gc' to be distributed and are 2026-05-13T19:10:54,138 already explicitly excluding 'multiqc.modules.fastqc.fastqc_theoretical_gc' via 2026-05-13T19:10:54,139 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,139 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,140 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,140 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,141 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,142 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,142 even if it does not contain any `.py` files. 2026-05-13T19:10:54,143 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,143 directory, all directories are treated like packages. 2026-05-13T19:10:54,143 ******************************************************************************** 2026-05-13T19:10:54,144 !! 2026-05-13T19:10:54,145 check.warn(importable) 2026-05-13T19:10:54,145 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqe' is absent from the `packages` configuration. 2026-05-13T19:10:54,145 !! 2026-05-13T19:10:54,146 ******************************************************************************** 2026-05-13T19:10:54,147 ############################ 2026-05-13T19:10:54,147 # Package would be ignored # 2026-05-13T19:10:54,148 ############################ 2026-05-13T19:10:54,148 Python recognizes 'multiqc.modules.fastqe' as an importable package[^1], 2026-05-13T19:10:54,149 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,149 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,150 package, please make sure that 'multiqc.modules.fastqe' is explicitly added 2026-05-13T19:10:54,150 to the `packages` configuration field. 2026-05-13T19:10:54,151 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,152 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,152 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,153 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,154 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,155 If you don't want 'multiqc.modules.fastqe' to be distributed and are 2026-05-13T19:10:54,155 already explicitly excluding 'multiqc.modules.fastqe' via 2026-05-13T19:10:54,156 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,156 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,156 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,157 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,158 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,160 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,160 even if it does not contain any `.py` files. 2026-05-13T19:10:54,160 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,161 directory, all directories are treated like packages. 2026-05-13T19:10:54,161 ******************************************************************************** 2026-05-13T19:10:54,162 !! 2026-05-13T19:10:54,163 check.warn(importable) 2026-05-13T19:10:54,163 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.featurecounts' is absent from the `packages` configuration. 2026-05-13T19:10:54,163 !! 2026-05-13T19:10:54,164 ******************************************************************************** 2026-05-13T19:10:54,165 ############################ 2026-05-13T19:10:54,165 # Package would be ignored # 2026-05-13T19:10:54,165 ############################ 2026-05-13T19:10:54,166 Python recognizes 'multiqc.modules.featurecounts' as an importable package[^1], 2026-05-13T19:10:54,166 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,167 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,167 package, please make sure that 'multiqc.modules.featurecounts' is explicitly added 2026-05-13T19:10:54,167 to the `packages` configuration field. 2026-05-13T19:10:54,168 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,169 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,169 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,170 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,170 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,171 If you don't want 'multiqc.modules.featurecounts' to be distributed and are 2026-05-13T19:10:54,172 already explicitly excluding 'multiqc.modules.featurecounts' via 2026-05-13T19:10:54,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,172 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,173 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,174 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,174 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,176 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,176 even if it does not contain any `.py` files. 2026-05-13T19:10:54,177 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,177 directory, all directories are treated like packages. 2026-05-13T19:10:54,177 ******************************************************************************** 2026-05-13T19:10:54,178 !! 2026-05-13T19:10:54,179 check.warn(importable) 2026-05-13T19:10:54,179 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fgbio' is absent from the `packages` configuration. 2026-05-13T19:10:54,180 !! 2026-05-13T19:10:54,180 ******************************************************************************** 2026-05-13T19:10:54,181 ############################ 2026-05-13T19:10:54,181 # Package would be ignored # 2026-05-13T19:10:54,182 ############################ 2026-05-13T19:10:54,182 Python recognizes 'multiqc.modules.fgbio' as an importable package[^1], 2026-05-13T19:10:54,183 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,183 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,184 package, please make sure that 'multiqc.modules.fgbio' is explicitly added 2026-05-13T19:10:54,184 to the `packages` configuration field. 2026-05-13T19:10:54,185 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,186 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,186 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,187 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,188 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,189 If you don't want 'multiqc.modules.fgbio' to be distributed and are 2026-05-13T19:10:54,189 already explicitly excluding 'multiqc.modules.fgbio' via 2026-05-13T19:10:54,189 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,190 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,190 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,191 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,191 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,192 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,193 even if it does not contain any `.py` files. 2026-05-13T19:10:54,193 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,194 directory, all directories are treated like packages. 2026-05-13T19:10:54,194 ******************************************************************************** 2026-05-13T19:10:54,195 !! 2026-05-13T19:10:54,195 check.warn(importable) 2026-05-13T19:10:54,196 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.filtlong' is absent from the `packages` configuration. 2026-05-13T19:10:54,196 !! 2026-05-13T19:10:54,197 ******************************************************************************** 2026-05-13T19:10:54,197 ############################ 2026-05-13T19:10:54,198 # Package would be ignored # 2026-05-13T19:10:54,198 ############################ 2026-05-13T19:10:54,199 Python recognizes 'multiqc.modules.filtlong' as an importable package[^1], 2026-05-13T19:10:54,199 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,201 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,201 package, please make sure that 'multiqc.modules.filtlong' is explicitly added 2026-05-13T19:10:54,201 to the `packages` configuration field. 2026-05-13T19:10:54,202 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,203 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,203 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,204 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,205 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,206 If you don't want 'multiqc.modules.filtlong' to be distributed and are 2026-05-13T19:10:54,206 already explicitly excluding 'multiqc.modules.filtlong' via 2026-05-13T19:10:54,207 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,207 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,208 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,208 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,209 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,211 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,211 even if it does not contain any `.py` files. 2026-05-13T19:10:54,212 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,212 directory, all directories are treated like packages. 2026-05-13T19:10:54,213 ******************************************************************************** 2026-05-13T19:10:54,214 !! 2026-05-13T19:10:54,214 check.warn(importable) 2026-05-13T19:10:54,214 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.flash' is absent from the `packages` configuration. 2026-05-13T19:10:54,215 !! 2026-05-13T19:10:54,216 ******************************************************************************** 2026-05-13T19:10:54,216 ############################ 2026-05-13T19:10:54,216 # Package would be ignored # 2026-05-13T19:10:54,217 ############################ 2026-05-13T19:10:54,217 Python recognizes 'multiqc.modules.flash' as an importable package[^1], 2026-05-13T19:10:54,218 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,218 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,219 package, please make sure that 'multiqc.modules.flash' is explicitly added 2026-05-13T19:10:54,219 to the `packages` configuration field. 2026-05-13T19:10:54,220 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,220 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,221 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,222 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,223 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,224 If you don't want 'multiqc.modules.flash' to be distributed and are 2026-05-13T19:10:54,224 already explicitly excluding 'multiqc.modules.flash' via 2026-05-13T19:10:54,224 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,225 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,225 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,226 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,227 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,228 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,228 even if it does not contain any `.py` files. 2026-05-13T19:10:54,229 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,229 directory, all directories are treated like packages. 2026-05-13T19:10:54,230 ******************************************************************************** 2026-05-13T19:10:54,231 !! 2026-05-13T19:10:54,231 check.warn(importable) 2026-05-13T19:10:54,231 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.flexbar' is absent from the `packages` configuration. 2026-05-13T19:10:54,232 !! 2026-05-13T19:10:54,233 ******************************************************************************** 2026-05-13T19:10:54,233 ############################ 2026-05-13T19:10:54,234 # Package would be ignored # 2026-05-13T19:10:54,234 ############################ 2026-05-13T19:10:54,235 Python recognizes 'multiqc.modules.flexbar' as an importable package[^1], 2026-05-13T19:10:54,235 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,236 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,236 package, please make sure that 'multiqc.modules.flexbar' is explicitly added 2026-05-13T19:10:54,237 to the `packages` configuration field. 2026-05-13T19:10:54,237 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,238 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,238 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,239 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,239 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,240 If you don't want 'multiqc.modules.flexbar' to be distributed and are 2026-05-13T19:10:54,240 already explicitly excluding 'multiqc.modules.flexbar' via 2026-05-13T19:10:54,241 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,241 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,242 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,242 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,243 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,244 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,245 even if it does not contain any `.py` files. 2026-05-13T19:10:54,245 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,246 directory, all directories are treated like packages. 2026-05-13T19:10:54,246 ******************************************************************************** 2026-05-13T19:10:54,247 !! 2026-05-13T19:10:54,247 check.warn(importable) 2026-05-13T19:10:54,248 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.freyja' is absent from the `packages` configuration. 2026-05-13T19:10:54,248 !! 2026-05-13T19:10:54,249 ******************************************************************************** 2026-05-13T19:10:54,249 ############################ 2026-05-13T19:10:54,250 # Package would be ignored # 2026-05-13T19:10:54,250 ############################ 2026-05-13T19:10:54,251 Python recognizes 'multiqc.modules.freyja' as an importable package[^1], 2026-05-13T19:10:54,251 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,252 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,252 package, please make sure that 'multiqc.modules.freyja' is explicitly added 2026-05-13T19:10:54,253 to the `packages` configuration field. 2026-05-13T19:10:54,254 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,254 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,255 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,255 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,256 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,257 If you don't want 'multiqc.modules.freyja' to be distributed and are 2026-05-13T19:10:54,258 already explicitly excluding 'multiqc.modules.freyja' via 2026-05-13T19:10:54,258 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,258 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,259 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,260 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,261 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,262 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,262 even if it does not contain any `.py` files. 2026-05-13T19:10:54,262 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,263 directory, all directories are treated like packages. 2026-05-13T19:10:54,263 ******************************************************************************** 2026-05-13T19:10:54,264 !! 2026-05-13T19:10:54,264 check.warn(importable) 2026-05-13T19:10:54,265 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ganon' is absent from the `packages` configuration. 2026-05-13T19:10:54,265 !! 2026-05-13T19:10:54,266 ******************************************************************************** 2026-05-13T19:10:54,266 ############################ 2026-05-13T19:10:54,267 # Package would be ignored # 2026-05-13T19:10:54,267 ############################ 2026-05-13T19:10:54,268 Python recognizes 'multiqc.modules.ganon' as an importable package[^1], 2026-05-13T19:10:54,268 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,269 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,269 package, please make sure that 'multiqc.modules.ganon' is explicitly added 2026-05-13T19:10:54,270 to the `packages` configuration field. 2026-05-13T19:10:54,271 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,271 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,272 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,272 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,273 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,274 If you don't want 'multiqc.modules.ganon' to be distributed and are 2026-05-13T19:10:54,274 already explicitly excluding 'multiqc.modules.ganon' via 2026-05-13T19:10:54,275 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,275 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,276 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,276 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,277 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,279 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,279 even if it does not contain any `.py` files. 2026-05-13T19:10:54,279 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,280 directory, all directories are treated like packages. 2026-05-13T19:10:54,280 ******************************************************************************** 2026-05-13T19:10:54,281 !! 2026-05-13T19:10:54,282 check.warn(importable) 2026-05-13T19:10:54,282 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gatk' is absent from the `packages` configuration. 2026-05-13T19:10:54,283 !! 2026-05-13T19:10:54,283 ******************************************************************************** 2026-05-13T19:10:54,284 ############################ 2026-05-13T19:10:54,284 # Package would be ignored # 2026-05-13T19:10:54,284 ############################ 2026-05-13T19:10:54,285 Python recognizes 'multiqc.modules.gatk' as an importable package[^1], 2026-05-13T19:10:54,285 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,286 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,286 package, please make sure that 'multiqc.modules.gatk' is explicitly added 2026-05-13T19:10:54,287 to the `packages` configuration field. 2026-05-13T19:10:54,287 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,288 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,288 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,289 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,290 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,290 If you don't want 'multiqc.modules.gatk' to be distributed and are 2026-05-13T19:10:54,291 already explicitly excluding 'multiqc.modules.gatk' via 2026-05-13T19:10:54,291 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,291 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,292 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,293 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,294 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,295 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,295 even if it does not contain any `.py` files. 2026-05-13T19:10:54,296 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,296 directory, all directories are treated like packages. 2026-05-13T19:10:54,296 ******************************************************************************** 2026-05-13T19:10:54,297 !! 2026-05-13T19:10:54,298 check.warn(importable) 2026-05-13T19:10:54,298 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gffcompare' is absent from the `packages` configuration. 2026-05-13T19:10:54,299 !! 2026-05-13T19:10:54,300 ******************************************************************************** 2026-05-13T19:10:54,300 ############################ 2026-05-13T19:10:54,301 # Package would be ignored # 2026-05-13T19:10:54,301 ############################ 2026-05-13T19:10:54,301 Python recognizes 'multiqc.modules.gffcompare' as an importable package[^1], 2026-05-13T19:10:54,302 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,303 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,303 package, please make sure that 'multiqc.modules.gffcompare' is explicitly added 2026-05-13T19:10:54,304 to the `packages` configuration field. 2026-05-13T19:10:54,305 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,305 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,306 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,306 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,308 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,308 If you don't want 'multiqc.modules.gffcompare' to be distributed and are 2026-05-13T19:10:54,309 already explicitly excluding 'multiqc.modules.gffcompare' via 2026-05-13T19:10:54,309 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,309 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,310 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,310 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,311 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,312 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,313 even if it does not contain any `.py` files. 2026-05-13T19:10:54,313 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,313 directory, all directories are treated like packages. 2026-05-13T19:10:54,314 ******************************************************************************** 2026-05-13T19:10:54,315 !! 2026-05-13T19:10:54,315 check.warn(importable) 2026-05-13T19:10:54,315 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.glimpse' is absent from the `packages` configuration. 2026-05-13T19:10:54,316 !! 2026-05-13T19:10:54,317 ******************************************************************************** 2026-05-13T19:10:54,317 ############################ 2026-05-13T19:10:54,317 # Package would be ignored # 2026-05-13T19:10:54,318 ############################ 2026-05-13T19:10:54,318 Python recognizes 'multiqc.modules.glimpse' as an importable package[^1], 2026-05-13T19:10:54,319 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,320 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,320 package, please make sure that 'multiqc.modules.glimpse' is explicitly added 2026-05-13T19:10:54,320 to the `packages` configuration field. 2026-05-13T19:10:54,321 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,322 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,322 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,323 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,324 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,325 If you don't want 'multiqc.modules.glimpse' to be distributed and are 2026-05-13T19:10:54,325 already explicitly excluding 'multiqc.modules.glimpse' via 2026-05-13T19:10:54,326 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,326 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,326 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,328 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,329 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,330 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,331 even if it does not contain any `.py` files. 2026-05-13T19:10:54,331 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,331 directory, all directories are treated like packages. 2026-05-13T19:10:54,332 ******************************************************************************** 2026-05-13T19:10:54,333 !! 2026-05-13T19:10:54,333 check.warn(importable) 2026-05-13T19:10:54,334 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.goleft_indexcov' is absent from the `packages` configuration. 2026-05-13T19:10:54,334 !! 2026-05-13T19:10:54,335 ******************************************************************************** 2026-05-13T19:10:54,335 ############################ 2026-05-13T19:10:54,336 # Package would be ignored # 2026-05-13T19:10:54,336 ############################ 2026-05-13T19:10:54,337 Python recognizes 'multiqc.modules.goleft_indexcov' as an importable package[^1], 2026-05-13T19:10:54,337 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,338 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,338 package, please make sure that 'multiqc.modules.goleft_indexcov' is explicitly added 2026-05-13T19:10:54,338 to the `packages` configuration field. 2026-05-13T19:10:54,339 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,340 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,340 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,341 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,342 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,342 If you don't want 'multiqc.modules.goleft_indexcov' to be distributed and are 2026-05-13T19:10:54,343 already explicitly excluding 'multiqc.modules.goleft_indexcov' via 2026-05-13T19:10:54,343 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,344 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,344 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,345 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,346 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,347 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,348 even if it does not contain any `.py` files. 2026-05-13T19:10:54,348 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,349 directory, all directories are treated like packages. 2026-05-13T19:10:54,349 ******************************************************************************** 2026-05-13T19:10:54,350 !! 2026-05-13T19:10:54,350 check.warn(importable) 2026-05-13T19:10:54,351 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gopeaks' is absent from the `packages` configuration. 2026-05-13T19:10:54,351 !! 2026-05-13T19:10:54,352 ******************************************************************************** 2026-05-13T19:10:54,352 ############################ 2026-05-13T19:10:54,353 # Package would be ignored # 2026-05-13T19:10:54,353 ############################ 2026-05-13T19:10:54,354 Python recognizes 'multiqc.modules.gopeaks' as an importable package[^1], 2026-05-13T19:10:54,354 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,355 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,356 package, please make sure that 'multiqc.modules.gopeaks' is explicitly added 2026-05-13T19:10:54,356 to the `packages` configuration field. 2026-05-13T19:10:54,357 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,358 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,358 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,359 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,359 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,360 If you don't want 'multiqc.modules.gopeaks' to be distributed and are 2026-05-13T19:10:54,360 already explicitly excluding 'multiqc.modules.gopeaks' via 2026-05-13T19:10:54,361 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,361 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,362 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,362 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,363 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,364 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,364 even if it does not contain any `.py` files. 2026-05-13T19:10:54,365 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,365 directory, all directories are treated like packages. 2026-05-13T19:10:54,366 ******************************************************************************** 2026-05-13T19:10:54,366 !! 2026-05-13T19:10:54,367 check.warn(importable) 2026-05-13T19:10:54,367 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gtdbtk' is absent from the `packages` configuration. 2026-05-13T19:10:54,368 !! 2026-05-13T19:10:54,369 ******************************************************************************** 2026-05-13T19:10:54,369 ############################ 2026-05-13T19:10:54,370 # Package would be ignored # 2026-05-13T19:10:54,370 ############################ 2026-05-13T19:10:54,370 Python recognizes 'multiqc.modules.gtdbtk' as an importable package[^1], 2026-05-13T19:10:54,371 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,372 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,372 package, please make sure that 'multiqc.modules.gtdbtk' is explicitly added 2026-05-13T19:10:54,373 to the `packages` configuration field. 2026-05-13T19:10:54,373 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,374 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,374 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,375 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,376 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,377 If you don't want 'multiqc.modules.gtdbtk' to be distributed and are 2026-05-13T19:10:54,377 already explicitly excluding 'multiqc.modules.gtdbtk' via 2026-05-13T19:10:54,378 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,378 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,379 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,379 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,381 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,382 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,382 even if it does not contain any `.py` files. 2026-05-13T19:10:54,383 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,383 directory, all directories are treated like packages. 2026-05-13T19:10:54,383 ******************************************************************************** 2026-05-13T19:10:54,384 !! 2026-05-13T19:10:54,385 check.warn(importable) 2026-05-13T19:10:54,385 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.haplocheck' is absent from the `packages` configuration. 2026-05-13T19:10:54,385 !! 2026-05-13T19:10:54,386 ******************************************************************************** 2026-05-13T19:10:54,386 ############################ 2026-05-13T19:10:54,387 # Package would be ignored # 2026-05-13T19:10:54,387 ############################ 2026-05-13T19:10:54,388 Python recognizes 'multiqc.modules.haplocheck' as an importable package[^1], 2026-05-13T19:10:54,388 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,389 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,389 package, please make sure that 'multiqc.modules.haplocheck' is explicitly added 2026-05-13T19:10:54,389 to the `packages` configuration field. 2026-05-13T19:10:54,390 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,391 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,391 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,392 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,393 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,394 If you don't want 'multiqc.modules.haplocheck' to be distributed and are 2026-05-13T19:10:54,394 already explicitly excluding 'multiqc.modules.haplocheck' via 2026-05-13T19:10:54,395 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,395 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,396 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,396 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,397 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,399 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,399 even if it does not contain any `.py` files. 2026-05-13T19:10:54,400 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,400 directory, all directories are treated like packages. 2026-05-13T19:10:54,401 ******************************************************************************** 2026-05-13T19:10:54,402 !! 2026-05-13T19:10:54,402 check.warn(importable) 2026-05-13T19:10:54,403 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.happy' is absent from the `packages` configuration. 2026-05-13T19:10:54,403 !! 2026-05-13T19:10:54,404 ******************************************************************************** 2026-05-13T19:10:54,404 ############################ 2026-05-13T19:10:54,405 # Package would be ignored # 2026-05-13T19:10:54,405 ############################ 2026-05-13T19:10:54,406 Python recognizes 'multiqc.modules.happy' as an importable package[^1], 2026-05-13T19:10:54,406 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,407 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,407 package, please make sure that 'multiqc.modules.happy' is explicitly added 2026-05-13T19:10:54,408 to the `packages` configuration field. 2026-05-13T19:10:54,408 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,409 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,409 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,410 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,411 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,412 If you don't want 'multiqc.modules.happy' to be distributed and are 2026-05-13T19:10:54,412 already explicitly excluding 'multiqc.modules.happy' via 2026-05-13T19:10:54,412 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,413 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,413 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,414 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,415 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,416 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,416 even if it does not contain any `.py` files. 2026-05-13T19:10:54,417 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,417 directory, all directories are treated like packages. 2026-05-13T19:10:54,417 ******************************************************************************** 2026-05-13T19:10:54,418 !! 2026-05-13T19:10:54,419 check.warn(importable) 2026-05-13T19:10:54,419 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicexplorer' is absent from the `packages` configuration. 2026-05-13T19:10:54,420 !! 2026-05-13T19:10:54,420 ******************************************************************************** 2026-05-13T19:10:54,421 ############################ 2026-05-13T19:10:54,421 # Package would be ignored # 2026-05-13T19:10:54,422 ############################ 2026-05-13T19:10:54,422 Python recognizes 'multiqc.modules.hicexplorer' as an importable package[^1], 2026-05-13T19:10:54,423 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,424 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,424 package, please make sure that 'multiqc.modules.hicexplorer' is explicitly added 2026-05-13T19:10:54,424 to the `packages` configuration field. 2026-05-13T19:10:54,425 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,426 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,426 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,427 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,428 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,429 If you don't want 'multiqc.modules.hicexplorer' to be distributed and are 2026-05-13T19:10:54,429 already explicitly excluding 'multiqc.modules.hicexplorer' via 2026-05-13T19:10:54,430 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,430 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,431 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,431 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,432 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,433 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,433 even if it does not contain any `.py` files. 2026-05-13T19:10:54,434 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,434 directory, all directories are treated like packages. 2026-05-13T19:10:54,434 ******************************************************************************** 2026-05-13T19:10:54,435 !! 2026-05-13T19:10:54,436 check.warn(importable) 2026-05-13T19:10:54,436 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicpro' is absent from the `packages` configuration. 2026-05-13T19:10:54,436 !! 2026-05-13T19:10:54,437 ******************************************************************************** 2026-05-13T19:10:54,437 ############################ 2026-05-13T19:10:54,438 # Package would be ignored # 2026-05-13T19:10:54,438 ############################ 2026-05-13T19:10:54,439 Python recognizes 'multiqc.modules.hicpro' as an importable package[^1], 2026-05-13T19:10:54,439 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,440 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,440 package, please make sure that 'multiqc.modules.hicpro' is explicitly added 2026-05-13T19:10:54,441 to the `packages` configuration field. 2026-05-13T19:10:54,441 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,442 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,442 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,443 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,444 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,445 If you don't want 'multiqc.modules.hicpro' to be distributed and are 2026-05-13T19:10:54,445 already explicitly excluding 'multiqc.modules.hicpro' via 2026-05-13T19:10:54,446 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,446 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,446 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,447 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,448 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,449 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,450 even if it does not contain any `.py` files. 2026-05-13T19:10:54,450 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,451 directory, all directories are treated like packages. 2026-05-13T19:10:54,451 ******************************************************************************** 2026-05-13T19:10:54,452 !! 2026-05-13T19:10:54,452 check.warn(importable) 2026-05-13T19:10:54,453 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicstuff' is absent from the `packages` configuration. 2026-05-13T19:10:54,453 !! 2026-05-13T19:10:54,454 ******************************************************************************** 2026-05-13T19:10:54,455 ############################ 2026-05-13T19:10:54,455 # Package would be ignored # 2026-05-13T19:10:54,455 ############################ 2026-05-13T19:10:54,456 Python recognizes 'multiqc.modules.hicstuff' as an importable package[^1], 2026-05-13T19:10:54,456 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,457 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,457 package, please make sure that 'multiqc.modules.hicstuff' is explicitly added 2026-05-13T19:10:54,458 to the `packages` configuration field. 2026-05-13T19:10:54,458 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,459 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,459 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,460 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,461 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,461 If you don't want 'multiqc.modules.hicstuff' to be distributed and are 2026-05-13T19:10:54,462 already explicitly excluding 'multiqc.modules.hicstuff' via 2026-05-13T19:10:54,462 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,463 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,463 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,464 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,465 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,466 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,467 even if it does not contain any `.py` files. 2026-05-13T19:10:54,467 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,468 directory, all directories are treated like packages. 2026-05-13T19:10:54,468 ******************************************************************************** 2026-05-13T19:10:54,469 !! 2026-05-13T19:10:54,470 check.warn(importable) 2026-05-13T19:10:54,470 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicup' is absent from the `packages` configuration. 2026-05-13T19:10:54,470 !! 2026-05-13T19:10:54,471 ******************************************************************************** 2026-05-13T19:10:54,472 ############################ 2026-05-13T19:10:54,472 # Package would be ignored # 2026-05-13T19:10:54,473 ############################ 2026-05-13T19:10:54,473 Python recognizes 'multiqc.modules.hicup' as an importable package[^1], 2026-05-13T19:10:54,473 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,474 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,475 package, please make sure that 'multiqc.modules.hicup' is explicitly added 2026-05-13T19:10:54,475 to the `packages` configuration field. 2026-05-13T19:10:54,476 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,476 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,477 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,478 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,478 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,479 If you don't want 'multiqc.modules.hicup' to be distributed and are 2026-05-13T19:10:54,479 already explicitly excluding 'multiqc.modules.hicup' via 2026-05-13T19:10:54,480 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,480 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,480 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,481 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,482 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,483 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,483 even if it does not contain any `.py` files. 2026-05-13T19:10:54,484 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,484 directory, all directories are treated like packages. 2026-05-13T19:10:54,484 ******************************************************************************** 2026-05-13T19:10:54,485 !! 2026-05-13T19:10:54,486 check.warn(importable) 2026-05-13T19:10:54,486 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hifi_trimmer' is absent from the `packages` configuration. 2026-05-13T19:10:54,487 !! 2026-05-13T19:10:54,487 ******************************************************************************** 2026-05-13T19:10:54,488 ############################ 2026-05-13T19:10:54,488 # Package would be ignored # 2026-05-13T19:10:54,489 ############################ 2026-05-13T19:10:54,489 Python recognizes 'multiqc.modules.hifi_trimmer' as an importable package[^1], 2026-05-13T19:10:54,490 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,490 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,491 package, please make sure that 'multiqc.modules.hifi_trimmer' is explicitly added 2026-05-13T19:10:54,491 to the `packages` configuration field. 2026-05-13T19:10:54,492 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,493 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,493 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,494 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,495 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,496 If you don't want 'multiqc.modules.hifi_trimmer' to be distributed and are 2026-05-13T19:10:54,496 already explicitly excluding 'multiqc.modules.hifi_trimmer' via 2026-05-13T19:10:54,497 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,497 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,497 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,498 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,499 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,500 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,501 even if it does not contain any `.py` files. 2026-05-13T19:10:54,501 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,502 directory, all directories are treated like packages. 2026-05-13T19:10:54,502 ******************************************************************************** 2026-05-13T19:10:54,503 !! 2026-05-13T19:10:54,503 check.warn(importable) 2026-05-13T19:10:54,504 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hifiasm' is absent from the `packages` configuration. 2026-05-13T19:10:54,504 !! 2026-05-13T19:10:54,505 ******************************************************************************** 2026-05-13T19:10:54,505 ############################ 2026-05-13T19:10:54,506 # Package would be ignored # 2026-05-13T19:10:54,506 ############################ 2026-05-13T19:10:54,506 Python recognizes 'multiqc.modules.hifiasm' as an importable package[^1], 2026-05-13T19:10:54,507 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,507 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,508 package, please make sure that 'multiqc.modules.hifiasm' is explicitly added 2026-05-13T19:10:54,508 to the `packages` configuration field. 2026-05-13T19:10:54,509 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,509 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,510 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,510 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,511 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,512 If you don't want 'multiqc.modules.hifiasm' to be distributed and are 2026-05-13T19:10:54,513 already explicitly excluding 'multiqc.modules.hifiasm' via 2026-05-13T19:10:54,513 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,514 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,514 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,515 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,516 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,517 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,518 even if it does not contain any `.py` files. 2026-05-13T19:10:54,518 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,519 directory, all directories are treated like packages. 2026-05-13T19:10:54,519 ******************************************************************************** 2026-05-13T19:10:54,520 !! 2026-05-13T19:10:54,520 check.warn(importable) 2026-05-13T19:10:54,521 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hisat2' is absent from the `packages` configuration. 2026-05-13T19:10:54,521 !! 2026-05-13T19:10:54,522 ******************************************************************************** 2026-05-13T19:10:54,523 ############################ 2026-05-13T19:10:54,523 # Package would be ignored # 2026-05-13T19:10:54,523 ############################ 2026-05-13T19:10:54,524 Python recognizes 'multiqc.modules.hisat2' as an importable package[^1], 2026-05-13T19:10:54,524 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,525 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,526 package, please make sure that 'multiqc.modules.hisat2' is explicitly added 2026-05-13T19:10:54,526 to the `packages` configuration field. 2026-05-13T19:10:54,527 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,527 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,528 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,529 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,529 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,530 If you don't want 'multiqc.modules.hisat2' to be distributed and are 2026-05-13T19:10:54,530 already explicitly excluding 'multiqc.modules.hisat2' via 2026-05-13T19:10:54,531 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,531 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,532 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,533 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,534 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,535 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,535 even if it does not contain any `.py` files. 2026-05-13T19:10:54,536 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,536 directory, all directories are treated like packages. 2026-05-13T19:10:54,536 ******************************************************************************** 2026-05-13T19:10:54,537 !! 2026-05-13T19:10:54,538 check.warn(importable) 2026-05-13T19:10:54,538 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.homer' is absent from the `packages` configuration. 2026-05-13T19:10:54,539 !! 2026-05-13T19:10:54,539 ******************************************************************************** 2026-05-13T19:10:54,540 ############################ 2026-05-13T19:10:54,540 # Package would be ignored # 2026-05-13T19:10:54,541 ############################ 2026-05-13T19:10:54,541 Python recognizes 'multiqc.modules.homer' as an importable package[^1], 2026-05-13T19:10:54,542 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,543 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,543 package, please make sure that 'multiqc.modules.homer' is explicitly added 2026-05-13T19:10:54,543 to the `packages` configuration field. 2026-05-13T19:10:54,544 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,545 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,545 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,546 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,547 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,548 If you don't want 'multiqc.modules.homer' to be distributed and are 2026-05-13T19:10:54,548 already explicitly excluding 'multiqc.modules.homer' via 2026-05-13T19:10:54,549 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,549 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,550 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,551 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,552 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,553 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,553 even if it does not contain any `.py` files. 2026-05-13T19:10:54,553 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,554 directory, all directories are treated like packages. 2026-05-13T19:10:54,554 ******************************************************************************** 2026-05-13T19:10:54,555 !! 2026-05-13T19:10:54,555 check.warn(importable) 2026-05-13T19:10:54,556 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hops' is absent from the `packages` configuration. 2026-05-13T19:10:54,556 !! 2026-05-13T19:10:54,557 ******************************************************************************** 2026-05-13T19:10:54,557 ############################ 2026-05-13T19:10:54,558 # Package would be ignored # 2026-05-13T19:10:54,558 ############################ 2026-05-13T19:10:54,559 Python recognizes 'multiqc.modules.hops' as an importable package[^1], 2026-05-13T19:10:54,559 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,560 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,560 package, please make sure that 'multiqc.modules.hops' is explicitly added 2026-05-13T19:10:54,561 to the `packages` configuration field. 2026-05-13T19:10:54,562 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,562 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,563 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,563 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,564 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,565 If you don't want 'multiqc.modules.hops' to be distributed and are 2026-05-13T19:10:54,566 already explicitly excluding 'multiqc.modules.hops' via 2026-05-13T19:10:54,566 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,567 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,567 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,568 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,569 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,570 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,571 even if it does not contain any `.py` files. 2026-05-13T19:10:54,571 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,572 directory, all directories are treated like packages. 2026-05-13T19:10:54,572 ******************************************************************************** 2026-05-13T19:10:54,573 !! 2026-05-13T19:10:54,573 check.warn(importable) 2026-05-13T19:10:54,574 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hostile' is absent from the `packages` configuration. 2026-05-13T19:10:54,574 !! 2026-05-13T19:10:54,575 ******************************************************************************** 2026-05-13T19:10:54,576 ############################ 2026-05-13T19:10:54,576 # Package would be ignored # 2026-05-13T19:10:54,577 ############################ 2026-05-13T19:10:54,577 Python recognizes 'multiqc.modules.hostile' as an importable package[^1], 2026-05-13T19:10:54,577 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,578 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,578 package, please make sure that 'multiqc.modules.hostile' is explicitly added 2026-05-13T19:10:54,579 to the `packages` configuration field. 2026-05-13T19:10:54,580 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,580 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,580 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,581 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,582 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,582 If you don't want 'multiqc.modules.hostile' to be distributed and are 2026-05-13T19:10:54,583 already explicitly excluding 'multiqc.modules.hostile' via 2026-05-13T19:10:54,583 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,584 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,584 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,585 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,586 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,587 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,587 even if it does not contain any `.py` files. 2026-05-13T19:10:54,588 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,588 directory, all directories are treated like packages. 2026-05-13T19:10:54,589 ******************************************************************************** 2026-05-13T19:10:54,590 !! 2026-05-13T19:10:54,590 check.warn(importable) 2026-05-13T19:10:54,591 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.htseq' is absent from the `packages` configuration. 2026-05-13T19:10:54,591 !! 2026-05-13T19:10:54,592 ******************************************************************************** 2026-05-13T19:10:54,593 ############################ 2026-05-13T19:10:54,593 # Package would be ignored # 2026-05-13T19:10:54,594 ############################ 2026-05-13T19:10:54,594 Python recognizes 'multiqc.modules.htseq' as an importable package[^1], 2026-05-13T19:10:54,595 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,596 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,596 package, please make sure that 'multiqc.modules.htseq' is explicitly added 2026-05-13T19:10:54,597 to the `packages` configuration field. 2026-05-13T19:10:54,598 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,598 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,599 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,600 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,601 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,602 If you don't want 'multiqc.modules.htseq' to be distributed and are 2026-05-13T19:10:54,602 already explicitly excluding 'multiqc.modules.htseq' via 2026-05-13T19:10:54,603 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,603 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,604 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,604 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,605 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,606 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,607 even if it does not contain any `.py` files. 2026-05-13T19:10:54,607 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,607 directory, all directories are treated like packages. 2026-05-13T19:10:54,608 ******************************************************************************** 2026-05-13T19:10:54,609 !! 2026-05-13T19:10:54,609 check.warn(importable) 2026-05-13T19:10:54,610 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.humid' is absent from the `packages` configuration. 2026-05-13T19:10:54,610 !! 2026-05-13T19:10:54,611 ******************************************************************************** 2026-05-13T19:10:54,611 ############################ 2026-05-13T19:10:54,612 # Package would be ignored # 2026-05-13T19:10:54,612 ############################ 2026-05-13T19:10:54,612 Python recognizes 'multiqc.modules.humid' as an importable package[^1], 2026-05-13T19:10:54,613 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,614 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,614 package, please make sure that 'multiqc.modules.humid' is explicitly added 2026-05-13T19:10:54,614 to the `packages` configuration field. 2026-05-13T19:10:54,615 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,616 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,616 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,617 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,618 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,619 If you don't want 'multiqc.modules.humid' to be distributed and are 2026-05-13T19:10:54,619 already explicitly excluding 'multiqc.modules.humid' via 2026-05-13T19:10:54,620 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,620 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,620 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,621 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,622 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,624 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,624 even if it does not contain any `.py` files. 2026-05-13T19:10:54,624 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,625 directory, all directories are treated like packages. 2026-05-13T19:10:54,625 ******************************************************************************** 2026-05-13T19:10:54,626 !! 2026-05-13T19:10:54,627 check.warn(importable) 2026-05-13T19:10:54,627 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.interop' is absent from the `packages` configuration. 2026-05-13T19:10:54,627 !! 2026-05-13T19:10:54,628 ******************************************************************************** 2026-05-13T19:10:54,628 ############################ 2026-05-13T19:10:54,629 # Package would be ignored # 2026-05-13T19:10:54,629 ############################ 2026-05-13T19:10:54,629 Python recognizes 'multiqc.modules.interop' as an importable package[^1], 2026-05-13T19:10:54,630 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,631 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,631 package, please make sure that 'multiqc.modules.interop' is explicitly added 2026-05-13T19:10:54,631 to the `packages` configuration field. 2026-05-13T19:10:54,632 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,633 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,633 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,634 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,635 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,635 If you don't want 'multiqc.modules.interop' to be distributed and are 2026-05-13T19:10:54,636 already explicitly excluding 'multiqc.modules.interop' via 2026-05-13T19:10:54,636 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,637 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,637 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,638 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,639 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,641 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,641 even if it does not contain any `.py` files. 2026-05-13T19:10:54,642 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,642 directory, all directories are treated like packages. 2026-05-13T19:10:54,643 ******************************************************************************** 2026-05-13T19:10:54,644 !! 2026-05-13T19:10:54,644 check.warn(importable) 2026-05-13T19:10:54,645 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.isoseq' is absent from the `packages` configuration. 2026-05-13T19:10:54,645 !! 2026-05-13T19:10:54,646 ******************************************************************************** 2026-05-13T19:10:54,646 ############################ 2026-05-13T19:10:54,647 # Package would be ignored # 2026-05-13T19:10:54,647 ############################ 2026-05-13T19:10:54,648 Python recognizes 'multiqc.modules.isoseq' as an importable package[^1], 2026-05-13T19:10:54,648 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,649 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,650 package, please make sure that 'multiqc.modules.isoseq' is explicitly added 2026-05-13T19:10:54,650 to the `packages` configuration field. 2026-05-13T19:10:54,651 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,651 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,652 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,653 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,653 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,654 If you don't want 'multiqc.modules.isoseq' to be distributed and are 2026-05-13T19:10:54,654 already explicitly excluding 'multiqc.modules.isoseq' via 2026-05-13T19:10:54,655 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,655 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,656 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,656 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,658 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,659 even if it does not contain any `.py` files. 2026-05-13T19:10:54,659 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,660 directory, all directories are treated like packages. 2026-05-13T19:10:54,660 ******************************************************************************** 2026-05-13T19:10:54,661 !! 2026-05-13T19:10:54,661 check.warn(importable) 2026-05-13T19:10:54,662 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ivar' is absent from the `packages` configuration. 2026-05-13T19:10:54,662 !! 2026-05-13T19:10:54,663 ******************************************************************************** 2026-05-13T19:10:54,663 ############################ 2026-05-13T19:10:54,664 # Package would be ignored # 2026-05-13T19:10:54,664 ############################ 2026-05-13T19:10:54,665 Python recognizes 'multiqc.modules.ivar' as an importable package[^1], 2026-05-13T19:10:54,665 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,666 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,666 package, please make sure that 'multiqc.modules.ivar' is explicitly added 2026-05-13T19:10:54,667 to the `packages` configuration field. 2026-05-13T19:10:54,667 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,668 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,668 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,669 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,670 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,671 If you don't want 'multiqc.modules.ivar' to be distributed and are 2026-05-13T19:10:54,672 already explicitly excluding 'multiqc.modules.ivar' via 2026-05-13T19:10:54,672 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,673 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,673 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,674 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,675 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,676 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,677 even if it does not contain any `.py` files. 2026-05-13T19:10:54,677 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,678 directory, all directories are treated like packages. 2026-05-13T19:10:54,678 ******************************************************************************** 2026-05-13T19:10:54,679 !! 2026-05-13T19:10:54,679 check.warn(importable) 2026-05-13T19:10:54,680 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.jcvi' is absent from the `packages` configuration. 2026-05-13T19:10:54,680 !! 2026-05-13T19:10:54,681 ******************************************************************************** 2026-05-13T19:10:54,681 ############################ 2026-05-13T19:10:54,681 # Package would be ignored # 2026-05-13T19:10:54,682 ############################ 2026-05-13T19:10:54,682 Python recognizes 'multiqc.modules.jcvi' as an importable package[^1], 2026-05-13T19:10:54,682 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,683 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,683 package, please make sure that 'multiqc.modules.jcvi' is explicitly added 2026-05-13T19:10:54,684 to the `packages` configuration field. 2026-05-13T19:10:54,685 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,685 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,685 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,686 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,687 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,688 If you don't want 'multiqc.modules.jcvi' to be distributed and are 2026-05-13T19:10:54,688 already explicitly excluding 'multiqc.modules.jcvi' via 2026-05-13T19:10:54,689 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,689 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,690 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,690 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,691 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,693 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,693 even if it does not contain any `.py` files. 2026-05-13T19:10:54,693 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,694 directory, all directories are treated like packages. 2026-05-13T19:10:54,694 ******************************************************************************** 2026-05-13T19:10:54,695 !! 2026-05-13T19:10:54,696 check.warn(importable) 2026-05-13T19:10:54,696 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.jellyfish' is absent from the `packages` configuration. 2026-05-13T19:10:54,697 !! 2026-05-13T19:10:54,697 ******************************************************************************** 2026-05-13T19:10:54,698 ############################ 2026-05-13T19:10:54,698 # Package would be ignored # 2026-05-13T19:10:54,699 ############################ 2026-05-13T19:10:54,699 Python recognizes 'multiqc.modules.jellyfish' as an importable package[^1], 2026-05-13T19:10:54,700 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,701 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,701 package, please make sure that 'multiqc.modules.jellyfish' is explicitly added 2026-05-13T19:10:54,701 to the `packages` configuration field. 2026-05-13T19:10:54,702 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,702 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,703 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,703 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,704 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,705 If you don't want 'multiqc.modules.jellyfish' to be distributed and are 2026-05-13T19:10:54,705 already explicitly excluding 'multiqc.modules.jellyfish' via 2026-05-13T19:10:54,706 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,706 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,706 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,707 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,708 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,709 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,709 even if it does not contain any `.py` files. 2026-05-13T19:10:54,710 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,710 directory, all directories are treated like packages. 2026-05-13T19:10:54,711 ******************************************************************************** 2026-05-13T19:10:54,712 !! 2026-05-13T19:10:54,712 check.warn(importable) 2026-05-13T19:10:54,712 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kaiju' is absent from the `packages` configuration. 2026-05-13T19:10:54,713 !! 2026-05-13T19:10:54,714 ******************************************************************************** 2026-05-13T19:10:54,714 ############################ 2026-05-13T19:10:54,714 # Package would be ignored # 2026-05-13T19:10:54,715 ############################ 2026-05-13T19:10:54,715 Python recognizes 'multiqc.modules.kaiju' as an importable package[^1], 2026-05-13T19:10:54,716 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,717 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,717 package, please make sure that 'multiqc.modules.kaiju' is explicitly added 2026-05-13T19:10:54,717 to the `packages` configuration field. 2026-05-13T19:10:54,718 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,719 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,720 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,721 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,722 If you don't want 'multiqc.modules.kaiju' to be distributed and are 2026-05-13T19:10:54,722 already explicitly excluding 'multiqc.modules.kaiju' via 2026-05-13T19:10:54,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,723 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,723 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,724 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,725 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,726 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,727 even if it does not contain any `.py` files. 2026-05-13T19:10:54,727 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,727 directory, all directories are treated like packages. 2026-05-13T19:10:54,728 ******************************************************************************** 2026-05-13T19:10:54,728 !! 2026-05-13T19:10:54,729 check.warn(importable) 2026-05-13T19:10:54,729 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kallisto' is absent from the `packages` configuration. 2026-05-13T19:10:54,729 !! 2026-05-13T19:10:54,730 ******************************************************************************** 2026-05-13T19:10:54,731 ############################ 2026-05-13T19:10:54,731 # Package would be ignored # 2026-05-13T19:10:54,731 ############################ 2026-05-13T19:10:54,732 Python recognizes 'multiqc.modules.kallisto' as an importable package[^1], 2026-05-13T19:10:54,732 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,733 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,733 package, please make sure that 'multiqc.modules.kallisto' is explicitly added 2026-05-13T19:10:54,734 to the `packages` configuration field. 2026-05-13T19:10:54,735 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,735 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,736 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,737 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,738 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,739 If you don't want 'multiqc.modules.kallisto' to be distributed and are 2026-05-13T19:10:54,739 already explicitly excluding 'multiqc.modules.kallisto' via 2026-05-13T19:10:54,740 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,740 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,740 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,741 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,742 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,744 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,744 even if it does not contain any `.py` files. 2026-05-13T19:10:54,744 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,745 directory, all directories are treated like packages. 2026-05-13T19:10:54,745 ******************************************************************************** 2026-05-13T19:10:54,746 !! 2026-05-13T19:10:54,747 check.warn(importable) 2026-05-13T19:10:54,747 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kat' is absent from the `packages` configuration. 2026-05-13T19:10:54,748 !! 2026-05-13T19:10:54,749 ******************************************************************************** 2026-05-13T19:10:54,750 ############################ 2026-05-13T19:10:54,750 # Package would be ignored # 2026-05-13T19:10:54,750 ############################ 2026-05-13T19:10:54,751 Python recognizes 'multiqc.modules.kat' as an importable package[^1], 2026-05-13T19:10:54,751 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,752 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,752 package, please make sure that 'multiqc.modules.kat' is explicitly added 2026-05-13T19:10:54,752 to the `packages` configuration field. 2026-05-13T19:10:54,753 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,754 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,754 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,755 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,756 If you don't want 'multiqc.modules.kat' to be distributed and are 2026-05-13T19:10:54,756 already explicitly excluding 'multiqc.modules.kat' via 2026-05-13T19:10:54,757 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,758 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,759 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,760 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,761 even if it does not contain any `.py` files. 2026-05-13T19:10:54,762 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,762 directory, all directories are treated like packages. 2026-05-13T19:10:54,763 ******************************************************************************** 2026-05-13T19:10:54,763 !! 2026-05-13T19:10:54,764 check.warn(importable) 2026-05-13T19:10:54,764 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kraken' is absent from the `packages` configuration. 2026-05-13T19:10:54,765 !! 2026-05-13T19:10:54,766 ******************************************************************************** 2026-05-13T19:10:54,766 ############################ 2026-05-13T19:10:54,767 # Package would be ignored # 2026-05-13T19:10:54,767 ############################ 2026-05-13T19:10:54,768 Python recognizes 'multiqc.modules.kraken' as an importable package[^1], 2026-05-13T19:10:54,768 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,769 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,769 package, please make sure that 'multiqc.modules.kraken' is explicitly added 2026-05-13T19:10:54,770 to the `packages` configuration field. 2026-05-13T19:10:54,771 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,771 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,772 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,772 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,773 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,774 If you don't want 'multiqc.modules.kraken' to be distributed and are 2026-05-13T19:10:54,775 already explicitly excluding 'multiqc.modules.kraken' via 2026-05-13T19:10:54,775 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,775 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,776 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,776 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,777 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,778 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,779 even if it does not contain any `.py` files. 2026-05-13T19:10:54,779 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,779 directory, all directories are treated like packages. 2026-05-13T19:10:54,780 ******************************************************************************** 2026-05-13T19:10:54,780 !! 2026-05-13T19:10:54,781 check.warn(importable) 2026-05-13T19:10:54,781 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.leehom' is absent from the `packages` configuration. 2026-05-13T19:10:54,782 !! 2026-05-13T19:10:54,782 ******************************************************************************** 2026-05-13T19:10:54,783 ############################ 2026-05-13T19:10:54,783 # Package would be ignored # 2026-05-13T19:10:54,784 ############################ 2026-05-13T19:10:54,784 Python recognizes 'multiqc.modules.leehom' as an importable package[^1], 2026-05-13T19:10:54,785 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,785 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,786 package, please make sure that 'multiqc.modules.leehom' is explicitly added 2026-05-13T19:10:54,786 to the `packages` configuration field. 2026-05-13T19:10:54,787 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,788 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,788 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,789 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,790 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,791 If you don't want 'multiqc.modules.leehom' to be distributed and are 2026-05-13T19:10:54,791 already explicitly excluding 'multiqc.modules.leehom' via 2026-05-13T19:10:54,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,792 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,793 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,794 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,796 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,796 even if it does not contain any `.py` files. 2026-05-13T19:10:54,796 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,797 directory, all directories are treated like packages. 2026-05-13T19:10:54,797 ******************************************************************************** 2026-05-13T19:10:54,798 !! 2026-05-13T19:10:54,799 check.warn(importable) 2026-05-13T19:10:54,799 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.librarian' is absent from the `packages` configuration. 2026-05-13T19:10:54,799 !! 2026-05-13T19:10:54,800 ******************************************************************************** 2026-05-13T19:10:54,800 ############################ 2026-05-13T19:10:54,801 # Package would be ignored # 2026-05-13T19:10:54,801 ############################ 2026-05-13T19:10:54,802 Python recognizes 'multiqc.modules.librarian' as an importable package[^1], 2026-05-13T19:10:54,802 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,803 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,803 package, please make sure that 'multiqc.modules.librarian' is explicitly added 2026-05-13T19:10:54,803 to the `packages` configuration field. 2026-05-13T19:10:54,804 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,805 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,805 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,806 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,807 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,808 If you don't want 'multiqc.modules.librarian' to be distributed and are 2026-05-13T19:10:54,808 already explicitly excluding 'multiqc.modules.librarian' via 2026-05-13T19:10:54,809 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,809 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,809 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,810 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,811 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,812 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,813 even if it does not contain any `.py` files. 2026-05-13T19:10:54,813 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,814 directory, all directories are treated like packages. 2026-05-13T19:10:54,814 ******************************************************************************** 2026-05-13T19:10:54,815 !! 2026-05-13T19:10:54,815 check.warn(importable) 2026-05-13T19:10:54,816 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.lima' is absent from the `packages` configuration. 2026-05-13T19:10:54,816 !! 2026-05-13T19:10:54,817 ******************************************************************************** 2026-05-13T19:10:54,818 ############################ 2026-05-13T19:10:54,818 # Package would be ignored # 2026-05-13T19:10:54,818 ############################ 2026-05-13T19:10:54,819 Python recognizes 'multiqc.modules.lima' as an importable package[^1], 2026-05-13T19:10:54,819 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,820 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,821 package, please make sure that 'multiqc.modules.lima' is explicitly added 2026-05-13T19:10:54,821 to the `packages` configuration field. 2026-05-13T19:10:54,822 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,822 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,823 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,823 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,824 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,825 If you don't want 'multiqc.modules.lima' to be distributed and are 2026-05-13T19:10:54,825 already explicitly excluding 'multiqc.modules.lima' via 2026-05-13T19:10:54,825 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,826 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,826 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,827 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,828 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,829 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,829 even if it does not contain any `.py` files. 2026-05-13T19:10:54,830 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,830 directory, all directories are treated like packages. 2026-05-13T19:10:54,830 ******************************************************************************** 2026-05-13T19:10:54,831 !! 2026-05-13T19:10:54,832 check.warn(importable) 2026-05-13T19:10:54,832 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.longranger' is absent from the `packages` configuration. 2026-05-13T19:10:54,832 !! 2026-05-13T19:10:54,833 ******************************************************************************** 2026-05-13T19:10:54,834 ############################ 2026-05-13T19:10:54,834 # Package would be ignored # 2026-05-13T19:10:54,834 ############################ 2026-05-13T19:10:54,835 Python recognizes 'multiqc.modules.longranger' as an importable package[^1], 2026-05-13T19:10:54,835 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,836 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,837 package, please make sure that 'multiqc.modules.longranger' is explicitly added 2026-05-13T19:10:54,837 to the `packages` configuration field. 2026-05-13T19:10:54,838 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,838 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,839 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,840 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,840 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,841 If you don't want 'multiqc.modules.longranger' to be distributed and are 2026-05-13T19:10:54,842 already explicitly excluding 'multiqc.modules.longranger' via 2026-05-13T19:10:54,842 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,843 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,843 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,844 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,845 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,846 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,846 even if it does not contain any `.py` files. 2026-05-13T19:10:54,847 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,847 directory, all directories are treated like packages. 2026-05-13T19:10:54,847 ******************************************************************************** 2026-05-13T19:10:54,848 !! 2026-05-13T19:10:54,849 check.warn(importable) 2026-05-13T19:10:54,849 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.macs2' is absent from the `packages` configuration. 2026-05-13T19:10:54,849 !! 2026-05-13T19:10:54,850 ******************************************************************************** 2026-05-13T19:10:54,850 ############################ 2026-05-13T19:10:54,851 # Package would be ignored # 2026-05-13T19:10:54,851 ############################ 2026-05-13T19:10:54,852 Python recognizes 'multiqc.modules.macs2' as an importable package[^1], 2026-05-13T19:10:54,852 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,853 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,853 package, please make sure that 'multiqc.modules.macs2' is explicitly added 2026-05-13T19:10:54,853 to the `packages` configuration field. 2026-05-13T19:10:54,854 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,855 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,855 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,856 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,857 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,858 If you don't want 'multiqc.modules.macs2' to be distributed and are 2026-05-13T19:10:54,858 already explicitly excluding 'multiqc.modules.macs2' via 2026-05-13T19:10:54,859 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,859 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,859 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,860 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,861 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,862 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,863 even if it does not contain any `.py` files. 2026-05-13T19:10:54,863 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,864 directory, all directories are treated like packages. 2026-05-13T19:10:54,864 ******************************************************************************** 2026-05-13T19:10:54,865 !! 2026-05-13T19:10:54,866 check.warn(importable) 2026-05-13T19:10:54,866 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.malt' is absent from the `packages` configuration. 2026-05-13T19:10:54,866 !! 2026-05-13T19:10:54,867 ******************************************************************************** 2026-05-13T19:10:54,868 ############################ 2026-05-13T19:10:54,868 # Package would be ignored # 2026-05-13T19:10:54,869 ############################ 2026-05-13T19:10:54,869 Python recognizes 'multiqc.modules.malt' as an importable package[^1], 2026-05-13T19:10:54,870 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,871 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,871 package, please make sure that 'multiqc.modules.malt' is explicitly added 2026-05-13T19:10:54,872 to the `packages` configuration field. 2026-05-13T19:10:54,872 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,873 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,873 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,874 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,875 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,875 If you don't want 'multiqc.modules.malt' to be distributed and are 2026-05-13T19:10:54,876 already explicitly excluding 'multiqc.modules.malt' via 2026-05-13T19:10:54,876 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,877 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,877 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,878 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,879 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,880 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,880 even if it does not contain any `.py` files. 2026-05-13T19:10:54,881 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,881 directory, all directories are treated like packages. 2026-05-13T19:10:54,882 ******************************************************************************** 2026-05-13T19:10:54,882 !! 2026-05-13T19:10:54,883 check.warn(importable) 2026-05-13T19:10:54,883 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mapdamage' is absent from the `packages` configuration. 2026-05-13T19:10:54,884 !! 2026-05-13T19:10:54,885 ******************************************************************************** 2026-05-13T19:10:54,885 ############################ 2026-05-13T19:10:54,885 # Package would be ignored # 2026-05-13T19:10:54,886 ############################ 2026-05-13T19:10:54,886 Python recognizes 'multiqc.modules.mapdamage' as an importable package[^1], 2026-05-13T19:10:54,887 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,888 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,888 package, please make sure that 'multiqc.modules.mapdamage' is explicitly added 2026-05-13T19:10:54,889 to the `packages` configuration field. 2026-05-13T19:10:54,890 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,890 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,890 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,891 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,892 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,893 If you don't want 'multiqc.modules.mapdamage' to be distributed and are 2026-05-13T19:10:54,894 already explicitly excluding 'multiqc.modules.mapdamage' via 2026-05-13T19:10:54,894 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,894 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,895 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,896 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,896 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,898 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,898 even if it does not contain any `.py` files. 2026-05-13T19:10:54,898 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,899 directory, all directories are treated like packages. 2026-05-13T19:10:54,899 ******************************************************************************** 2026-05-13T19:10:54,900 !! 2026-05-13T19:10:54,900 check.warn(importable) 2026-05-13T19:10:54,901 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.megahit' is absent from the `packages` configuration. 2026-05-13T19:10:54,901 !! 2026-05-13T19:10:54,902 ******************************************************************************** 2026-05-13T19:10:54,902 ############################ 2026-05-13T19:10:54,902 # Package would be ignored # 2026-05-13T19:10:54,903 ############################ 2026-05-13T19:10:54,903 Python recognizes 'multiqc.modules.megahit' as an importable package[^1], 2026-05-13T19:10:54,904 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,904 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,905 package, please make sure that 'multiqc.modules.megahit' is explicitly added 2026-05-13T19:10:54,905 to the `packages` configuration field. 2026-05-13T19:10:54,906 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,907 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,907 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,908 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,909 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,909 If you don't want 'multiqc.modules.megahit' to be distributed and are 2026-05-13T19:10:54,910 already explicitly excluding 'multiqc.modules.megahit' via 2026-05-13T19:10:54,910 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,911 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,911 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,912 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,913 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,914 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,915 even if it does not contain any `.py` files. 2026-05-13T19:10:54,915 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,916 directory, all directories are treated like packages. 2026-05-13T19:10:54,916 ******************************************************************************** 2026-05-13T19:10:54,917 !! 2026-05-13T19:10:54,917 check.warn(importable) 2026-05-13T19:10:54,918 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.metaphlan' is absent from the `packages` configuration. 2026-05-13T19:10:54,918 !! 2026-05-13T19:10:54,919 ******************************************************************************** 2026-05-13T19:10:54,920 ############################ 2026-05-13T19:10:54,920 # Package would be ignored # 2026-05-13T19:10:54,920 ############################ 2026-05-13T19:10:54,921 Python recognizes 'multiqc.modules.metaphlan' as an importable package[^1], 2026-05-13T19:10:54,921 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,922 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,922 package, please make sure that 'multiqc.modules.metaphlan' is explicitly added 2026-05-13T19:10:54,922 to the `packages` configuration field. 2026-05-13T19:10:54,923 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,924 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,924 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,925 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,926 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,926 If you don't want 'multiqc.modules.metaphlan' to be distributed and are 2026-05-13T19:10:54,927 already explicitly excluding 'multiqc.modules.metaphlan' via 2026-05-13T19:10:54,927 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,928 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,928 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,929 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,930 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,931 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,932 even if it does not contain any `.py` files. 2026-05-13T19:10:54,932 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,933 directory, all directories are treated like packages. 2026-05-13T19:10:54,933 ******************************************************************************** 2026-05-13T19:10:54,934 !! 2026-05-13T19:10:54,934 check.warn(importable) 2026-05-13T19:10:54,935 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.methurator' is absent from the `packages` configuration. 2026-05-13T19:10:54,935 !! 2026-05-13T19:10:54,936 ******************************************************************************** 2026-05-13T19:10:54,937 ############################ 2026-05-13T19:10:54,937 # Package would be ignored # 2026-05-13T19:10:54,938 ############################ 2026-05-13T19:10:54,938 Python recognizes 'multiqc.modules.methurator' as an importable package[^1], 2026-05-13T19:10:54,939 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,940 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,940 package, please make sure that 'multiqc.modules.methurator' is explicitly added 2026-05-13T19:10:54,941 to the `packages` configuration field. 2026-05-13T19:10:54,942 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,942 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,943 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,944 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,944 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,945 If you don't want 'multiqc.modules.methurator' to be distributed and are 2026-05-13T19:10:54,945 already explicitly excluding 'multiqc.modules.methurator' via 2026-05-13T19:10:54,946 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,946 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,947 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,947 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,948 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,949 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,950 even if it does not contain any `.py` files. 2026-05-13T19:10:54,950 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,950 directory, all directories are treated like packages. 2026-05-13T19:10:54,951 ******************************************************************************** 2026-05-13T19:10:54,952 !! 2026-05-13T19:10:54,952 check.warn(importable) 2026-05-13T19:10:54,952 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.methylqa' is absent from the `packages` configuration. 2026-05-13T19:10:54,953 !! 2026-05-13T19:10:54,954 ******************************************************************************** 2026-05-13T19:10:54,954 ############################ 2026-05-13T19:10:54,955 # Package would be ignored # 2026-05-13T19:10:54,955 ############################ 2026-05-13T19:10:54,956 Python recognizes 'multiqc.modules.methylqa' as an importable package[^1], 2026-05-13T19:10:54,956 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,957 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,957 package, please make sure that 'multiqc.modules.methylqa' is explicitly added 2026-05-13T19:10:54,958 to the `packages` configuration field. 2026-05-13T19:10:54,959 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,960 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,961 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,962 If you don't want 'multiqc.modules.methylqa' to be distributed and are 2026-05-13T19:10:54,963 already explicitly excluding 'multiqc.modules.methylqa' via 2026-05-13T19:10:54,963 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,963 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,964 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,965 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,967 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,967 even if it does not contain any `.py` files. 2026-05-13T19:10:54,968 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,968 directory, all directories are treated like packages. 2026-05-13T19:10:54,969 ******************************************************************************** 2026-05-13T19:10:54,970 !! 2026-05-13T19:10:54,970 check.warn(importable) 2026-05-13T19:10:54,970 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mgikit' is absent from the `packages` configuration. 2026-05-13T19:10:54,971 !! 2026-05-13T19:10:54,971 ******************************************************************************** 2026-05-13T19:10:54,972 ############################ 2026-05-13T19:10:54,972 # Package would be ignored # 2026-05-13T19:10:54,973 ############################ 2026-05-13T19:10:54,973 Python recognizes 'multiqc.modules.mgikit' as an importable package[^1], 2026-05-13T19:10:54,973 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,974 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,974 package, please make sure that 'multiqc.modules.mgikit' is explicitly added 2026-05-13T19:10:54,975 to the `packages` configuration field. 2026-05-13T19:10:54,975 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,976 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,976 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,977 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,978 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,979 If you don't want 'multiqc.modules.mgikit' to be distributed and are 2026-05-13T19:10:54,979 already explicitly excluding 'multiqc.modules.mgikit' via 2026-05-13T19:10:54,980 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,980 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,981 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,981 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:54,982 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:54,984 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:54,984 even if it does not contain any `.py` files. 2026-05-13T19:10:54,985 On the other hand, currently there is no concept of package data 2026-05-13T19:10:54,985 directory, all directories are treated like packages. 2026-05-13T19:10:54,986 ******************************************************************************** 2026-05-13T19:10:54,986 !! 2026-05-13T19:10:54,987 check.warn(importable) 2026-05-13T19:10:54,987 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.minionqc' is absent from the `packages` configuration. 2026-05-13T19:10:54,988 !! 2026-05-13T19:10:54,989 ******************************************************************************** 2026-05-13T19:10:54,989 ############################ 2026-05-13T19:10:54,990 # Package would be ignored # 2026-05-13T19:10:54,990 ############################ 2026-05-13T19:10:54,991 Python recognizes 'multiqc.modules.minionqc' as an importable package[^1], 2026-05-13T19:10:54,991 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:54,992 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:54,993 package, please make sure that 'multiqc.modules.minionqc' is explicitly added 2026-05-13T19:10:54,993 to the `packages` configuration field. 2026-05-13T19:10:54,994 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:54,994 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:54,995 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:54,995 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:54,996 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:54,997 If you don't want 'multiqc.modules.minionqc' to be distributed and are 2026-05-13T19:10:54,997 already explicitly excluding 'multiqc.modules.minionqc' via 2026-05-13T19:10:54,997 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:54,998 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:54,998 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:54,999 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,000 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,001 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,001 even if it does not contain any `.py` files. 2026-05-13T19:10:55,002 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,002 directory, all directories are treated like packages. 2026-05-13T19:10:55,002 ******************************************************************************** 2026-05-13T19:10:55,003 !! 2026-05-13T19:10:55,004 check.warn(importable) 2026-05-13T19:10:55,004 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mirtop' is absent from the `packages` configuration. 2026-05-13T19:10:55,005 !! 2026-05-13T19:10:55,006 ******************************************************************************** 2026-05-13T19:10:55,006 ############################ 2026-05-13T19:10:55,007 # Package would be ignored # 2026-05-13T19:10:55,007 ############################ 2026-05-13T19:10:55,008 Python recognizes 'multiqc.modules.mirtop' as an importable package[^1], 2026-05-13T19:10:55,008 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,009 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,010 package, please make sure that 'multiqc.modules.mirtop' is explicitly added 2026-05-13T19:10:55,010 to the `packages` configuration field. 2026-05-13T19:10:55,011 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,011 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,012 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,013 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,014 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,014 If you don't want 'multiqc.modules.mirtop' to be distributed and are 2026-05-13T19:10:55,015 already explicitly excluding 'multiqc.modules.mirtop' via 2026-05-13T19:10:55,015 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,016 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,016 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,018 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,018 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,019 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,020 even if it does not contain any `.py` files. 2026-05-13T19:10:55,020 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,020 directory, all directories are treated like packages. 2026-05-13T19:10:55,021 ******************************************************************************** 2026-05-13T19:10:55,021 !! 2026-05-13T19:10:55,022 check.warn(importable) 2026-05-13T19:10:55,022 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mirtrace' is absent from the `packages` configuration. 2026-05-13T19:10:55,022 !! 2026-05-13T19:10:55,023 ******************************************************************************** 2026-05-13T19:10:55,024 ############################ 2026-05-13T19:10:55,024 # Package would be ignored # 2026-05-13T19:10:55,024 ############################ 2026-05-13T19:10:55,025 Python recognizes 'multiqc.modules.mirtrace' as an importable package[^1], 2026-05-13T19:10:55,025 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,026 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,026 package, please make sure that 'multiqc.modules.mirtrace' is explicitly added 2026-05-13T19:10:55,027 to the `packages` configuration field. 2026-05-13T19:10:55,027 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,028 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,028 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,029 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,030 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,031 If you don't want 'multiqc.modules.mirtrace' to be distributed and are 2026-05-13T19:10:55,031 already explicitly excluding 'multiqc.modules.mirtrace' via 2026-05-13T19:10:55,032 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,032 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,032 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,033 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,034 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,035 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,036 even if it does not contain any `.py` files. 2026-05-13T19:10:55,036 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,037 directory, all directories are treated like packages. 2026-05-13T19:10:55,037 ******************************************************************************** 2026-05-13T19:10:55,038 !! 2026-05-13T19:10:55,038 check.warn(importable) 2026-05-13T19:10:55,039 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mosaicatcher' is absent from the `packages` configuration. 2026-05-13T19:10:55,039 !! 2026-05-13T19:10:55,040 ******************************************************************************** 2026-05-13T19:10:55,041 ############################ 2026-05-13T19:10:55,041 # Package would be ignored # 2026-05-13T19:10:55,042 ############################ 2026-05-13T19:10:55,042 Python recognizes 'multiqc.modules.mosaicatcher' as an importable package[^1], 2026-05-13T19:10:55,042 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,043 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,043 package, please make sure that 'multiqc.modules.mosaicatcher' is explicitly added 2026-05-13T19:10:55,044 to the `packages` configuration field. 2026-05-13T19:10:55,044 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,045 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,045 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,046 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,047 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,047 If you don't want 'multiqc.modules.mosaicatcher' to be distributed and are 2026-05-13T19:10:55,048 already explicitly excluding 'multiqc.modules.mosaicatcher' via 2026-05-13T19:10:55,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,049 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,049 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,050 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,051 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,052 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,052 even if it does not contain any `.py` files. 2026-05-13T19:10:55,053 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,053 directory, all directories are treated like packages. 2026-05-13T19:10:55,054 ******************************************************************************** 2026-05-13T19:10:55,054 !! 2026-05-13T19:10:55,055 check.warn(importable) 2026-05-13T19:10:55,055 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mosdepth' is absent from the `packages` configuration. 2026-05-13T19:10:55,056 !! 2026-05-13T19:10:55,056 ******************************************************************************** 2026-05-13T19:10:55,057 ############################ 2026-05-13T19:10:55,057 # Package would be ignored # 2026-05-13T19:10:55,058 ############################ 2026-05-13T19:10:55,058 Python recognizes 'multiqc.modules.mosdepth' as an importable package[^1], 2026-05-13T19:10:55,059 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,060 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,060 package, please make sure that 'multiqc.modules.mosdepth' is explicitly added 2026-05-13T19:10:55,060 to the `packages` configuration field. 2026-05-13T19:10:55,061 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,062 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,062 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,063 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,064 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,065 If you don't want 'multiqc.modules.mosdepth' to be distributed and are 2026-05-13T19:10:55,065 already explicitly excluding 'multiqc.modules.mosdepth' via 2026-05-13T19:10:55,066 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,066 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,067 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,067 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,068 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,069 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,070 even if it does not contain any `.py` files. 2026-05-13T19:10:55,070 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,070 directory, all directories are treated like packages. 2026-05-13T19:10:55,071 ******************************************************************************** 2026-05-13T19:10:55,072 !! 2026-05-13T19:10:55,072 check.warn(importable) 2026-05-13T19:10:55,073 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mosdepth.tests' is absent from the `packages` configuration. 2026-05-13T19:10:55,073 !! 2026-05-13T19:10:55,074 ******************************************************************************** 2026-05-13T19:10:55,074 ############################ 2026-05-13T19:10:55,075 # Package would be ignored # 2026-05-13T19:10:55,075 ############################ 2026-05-13T19:10:55,076 Python recognizes 'multiqc.modules.mosdepth.tests' as an importable package[^1], 2026-05-13T19:10:55,076 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,077 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,077 package, please make sure that 'multiqc.modules.mosdepth.tests' is explicitly added 2026-05-13T19:10:55,078 to the `packages` configuration field. 2026-05-13T19:10:55,079 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,079 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,080 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,080 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,081 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,082 If you don't want 'multiqc.modules.mosdepth.tests' to be distributed and are 2026-05-13T19:10:55,083 already explicitly excluding 'multiqc.modules.mosdepth.tests' via 2026-05-13T19:10:55,083 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,084 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,084 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,085 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,086 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,087 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,088 even if it does not contain any `.py` files. 2026-05-13T19:10:55,088 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,089 directory, all directories are treated like packages. 2026-05-13T19:10:55,089 ******************************************************************************** 2026-05-13T19:10:55,090 !! 2026-05-13T19:10:55,091 check.warn(importable) 2026-05-13T19:10:55,091 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.motus' is absent from the `packages` configuration. 2026-05-13T19:10:55,091 !! 2026-05-13T19:10:55,092 ******************************************************************************** 2026-05-13T19:10:55,092 ############################ 2026-05-13T19:10:55,093 # Package would be ignored # 2026-05-13T19:10:55,093 ############################ 2026-05-13T19:10:55,093 Python recognizes 'multiqc.modules.motus' as an importable package[^1], 2026-05-13T19:10:55,094 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,094 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,095 package, please make sure that 'multiqc.modules.motus' is explicitly added 2026-05-13T19:10:55,095 to the `packages` configuration field. 2026-05-13T19:10:55,096 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,096 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,097 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,097 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,098 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,099 If you don't want 'multiqc.modules.motus' to be distributed and are 2026-05-13T19:10:55,099 already explicitly excluding 'multiqc.modules.motus' via 2026-05-13T19:10:55,100 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,100 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,101 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,101 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,102 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,104 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,104 even if it does not contain any `.py` files. 2026-05-13T19:10:55,104 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,105 directory, all directories are treated like packages. 2026-05-13T19:10:55,105 ******************************************************************************** 2026-05-13T19:10:55,106 !! 2026-05-13T19:10:55,106 check.warn(importable) 2026-05-13T19:10:55,107 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mtnucratio' is absent from the `packages` configuration. 2026-05-13T19:10:55,107 !! 2026-05-13T19:10:55,108 ******************************************************************************** 2026-05-13T19:10:55,108 ############################ 2026-05-13T19:10:55,109 # Package would be ignored # 2026-05-13T19:10:55,109 ############################ 2026-05-13T19:10:55,110 Python recognizes 'multiqc.modules.mtnucratio' as an importable package[^1], 2026-05-13T19:10:55,110 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,111 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,111 package, please make sure that 'multiqc.modules.mtnucratio' is explicitly added 2026-05-13T19:10:55,112 to the `packages` configuration field. 2026-05-13T19:10:55,113 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,113 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,114 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,114 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,115 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,116 If you don't want 'multiqc.modules.mtnucratio' to be distributed and are 2026-05-13T19:10:55,116 already explicitly excluding 'multiqc.modules.mtnucratio' via 2026-05-13T19:10:55,116 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,117 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,117 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,118 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,118 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,120 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,120 even if it does not contain any `.py` files. 2026-05-13T19:10:55,120 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,121 directory, all directories are treated like packages. 2026-05-13T19:10:55,121 ******************************************************************************** 2026-05-13T19:10:55,122 !! 2026-05-13T19:10:55,122 check.warn(importable) 2026-05-13T19:10:55,123 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.multivcfanalyzer' is absent from the `packages` configuration. 2026-05-13T19:10:55,123 !! 2026-05-13T19:10:55,124 ******************************************************************************** 2026-05-13T19:10:55,124 ############################ 2026-05-13T19:10:55,125 # Package would be ignored # 2026-05-13T19:10:55,125 ############################ 2026-05-13T19:10:55,125 Python recognizes 'multiqc.modules.multivcfanalyzer' as an importable package[^1], 2026-05-13T19:10:55,126 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,127 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,127 package, please make sure that 'multiqc.modules.multivcfanalyzer' is explicitly added 2026-05-13T19:10:55,128 to the `packages` configuration field. 2026-05-13T19:10:55,128 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,129 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,129 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,130 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,131 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,132 If you don't want 'multiqc.modules.multivcfanalyzer' to be distributed and are 2026-05-13T19:10:55,132 already explicitly excluding 'multiqc.modules.multivcfanalyzer' via 2026-05-13T19:10:55,133 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,133 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,134 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,135 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,136 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,137 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,138 even if it does not contain any `.py` files. 2026-05-13T19:10:55,138 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,138 directory, all directories are treated like packages. 2026-05-13T19:10:55,139 ******************************************************************************** 2026-05-13T19:10:55,139 !! 2026-05-13T19:10:55,140 check.warn(importable) 2026-05-13T19:10:55,140 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nanoq' is absent from the `packages` configuration. 2026-05-13T19:10:55,140 !! 2026-05-13T19:10:55,141 ******************************************************************************** 2026-05-13T19:10:55,141 ############################ 2026-05-13T19:10:55,142 # Package would be ignored # 2026-05-13T19:10:55,142 ############################ 2026-05-13T19:10:55,143 Python recognizes 'multiqc.modules.nanoq' as an importable package[^1], 2026-05-13T19:10:55,143 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,144 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,144 package, please make sure that 'multiqc.modules.nanoq' is explicitly added 2026-05-13T19:10:55,144 to the `packages` configuration field. 2026-05-13T19:10:55,145 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,146 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,146 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,147 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,148 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,148 If you don't want 'multiqc.modules.nanoq' to be distributed and are 2026-05-13T19:10:55,149 already explicitly excluding 'multiqc.modules.nanoq' via 2026-05-13T19:10:55,149 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,150 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,150 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,151 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,152 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,153 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,154 even if it does not contain any `.py` files. 2026-05-13T19:10:55,154 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,154 directory, all directories are treated like packages. 2026-05-13T19:10:55,155 ******************************************************************************** 2026-05-13T19:10:55,156 !! 2026-05-13T19:10:55,156 check.warn(importable) 2026-05-13T19:10:55,157 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nanostat' is absent from the `packages` configuration. 2026-05-13T19:10:55,157 !! 2026-05-13T19:10:55,158 ******************************************************************************** 2026-05-13T19:10:55,158 ############################ 2026-05-13T19:10:55,159 # Package would be ignored # 2026-05-13T19:10:55,160 ############################ 2026-05-13T19:10:55,160 Python recognizes 'multiqc.modules.nanostat' as an importable package[^1], 2026-05-13T19:10:55,161 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,162 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,162 package, please make sure that 'multiqc.modules.nanostat' is explicitly added 2026-05-13T19:10:55,162 to the `packages` configuration field. 2026-05-13T19:10:55,163 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,163 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,164 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,164 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,166 If you don't want 'multiqc.modules.nanostat' to be distributed and are 2026-05-13T19:10:55,166 already explicitly excluding 'multiqc.modules.nanostat' via 2026-05-13T19:10:55,167 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,167 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,167 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,168 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,169 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,170 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,171 even if it does not contain any `.py` files. 2026-05-13T19:10:55,171 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,171 directory, all directories are treated like packages. 2026-05-13T19:10:55,172 ******************************************************************************** 2026-05-13T19:10:55,173 !! 2026-05-13T19:10:55,173 check.warn(importable) 2026-05-13T19:10:55,173 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nextclade' is absent from the `packages` configuration. 2026-05-13T19:10:55,174 !! 2026-05-13T19:10:55,175 ******************************************************************************** 2026-05-13T19:10:55,175 ############################ 2026-05-13T19:10:55,175 # Package would be ignored # 2026-05-13T19:10:55,176 ############################ 2026-05-13T19:10:55,176 Python recognizes 'multiqc.modules.nextclade' as an importable package[^1], 2026-05-13T19:10:55,177 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,178 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,178 package, please make sure that 'multiqc.modules.nextclade' is explicitly added 2026-05-13T19:10:55,178 to the `packages` configuration field. 2026-05-13T19:10:55,179 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,180 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,180 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,181 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,182 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,183 If you don't want 'multiqc.modules.nextclade' to be distributed and are 2026-05-13T19:10:55,183 already explicitly excluding 'multiqc.modules.nextclade' via 2026-05-13T19:10:55,184 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,184 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,185 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,185 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,186 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,187 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,187 even if it does not contain any `.py` files. 2026-05-13T19:10:55,188 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,188 directory, all directories are treated like packages. 2026-05-13T19:10:55,188 ******************************************************************************** 2026-05-13T19:10:55,189 !! 2026-05-13T19:10:55,190 check.warn(importable) 2026-05-13T19:10:55,190 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ngsbits' is absent from the `packages` configuration. 2026-05-13T19:10:55,190 !! 2026-05-13T19:10:55,191 ******************************************************************************** 2026-05-13T19:10:55,191 ############################ 2026-05-13T19:10:55,192 # Package would be ignored # 2026-05-13T19:10:55,192 ############################ 2026-05-13T19:10:55,192 Python recognizes 'multiqc.modules.ngsbits' as an importable package[^1], 2026-05-13T19:10:55,193 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,194 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,194 package, please make sure that 'multiqc.modules.ngsbits' is explicitly added 2026-05-13T19:10:55,194 to the `packages` configuration field. 2026-05-13T19:10:55,195 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,196 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,196 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,197 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,198 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,199 If you don't want 'multiqc.modules.ngsbits' to be distributed and are 2026-05-13T19:10:55,199 already explicitly excluding 'multiqc.modules.ngsbits' via 2026-05-13T19:10:55,200 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,200 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,201 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,202 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,203 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,204 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,204 even if it does not contain any `.py` files. 2026-05-13T19:10:55,205 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,205 directory, all directories are treated like packages. 2026-05-13T19:10:55,206 ******************************************************************************** 2026-05-13T19:10:55,207 !! 2026-05-13T19:10:55,207 check.warn(importable) 2026-05-13T19:10:55,207 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ngsderive' is absent from the `packages` configuration. 2026-05-13T19:10:55,208 !! 2026-05-13T19:10:55,209 ******************************************************************************** 2026-05-13T19:10:55,209 ############################ 2026-05-13T19:10:55,210 # Package would be ignored # 2026-05-13T19:10:55,210 ############################ 2026-05-13T19:10:55,210 Python recognizes 'multiqc.modules.ngsderive' as an importable package[^1], 2026-05-13T19:10:55,211 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,211 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,212 package, please make sure that 'multiqc.modules.ngsderive' is explicitly added 2026-05-13T19:10:55,212 to the `packages` configuration field. 2026-05-13T19:10:55,213 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,213 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,213 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,214 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,215 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,216 If you don't want 'multiqc.modules.ngsderive' to be distributed and are 2026-05-13T19:10:55,216 already explicitly excluding 'multiqc.modules.ngsderive' via 2026-05-13T19:10:55,216 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,217 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,217 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,218 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,219 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,220 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,220 even if it does not contain any `.py` files. 2026-05-13T19:10:55,221 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,221 directory, all directories are treated like packages. 2026-05-13T19:10:55,222 ******************************************************************************** 2026-05-13T19:10:55,223 !! 2026-05-13T19:10:55,223 check.warn(importable) 2026-05-13T19:10:55,224 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nonpareil' is absent from the `packages` configuration. 2026-05-13T19:10:55,224 !! 2026-05-13T19:10:55,225 ******************************************************************************** 2026-05-13T19:10:55,225 ############################ 2026-05-13T19:10:55,226 # Package would be ignored # 2026-05-13T19:10:55,226 ############################ 2026-05-13T19:10:55,227 Python recognizes 'multiqc.modules.nonpareil' as an importable package[^1], 2026-05-13T19:10:55,227 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,228 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,228 package, please make sure that 'multiqc.modules.nonpareil' is explicitly added 2026-05-13T19:10:55,229 to the `packages` configuration field. 2026-05-13T19:10:55,230 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,230 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,232 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,232 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,233 If you don't want 'multiqc.modules.nonpareil' to be distributed and are 2026-05-13T19:10:55,233 already explicitly excluding 'multiqc.modules.nonpareil' via 2026-05-13T19:10:55,234 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,234 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,235 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,237 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,237 even if it does not contain any `.py` files. 2026-05-13T19:10:55,237 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,238 directory, all directories are treated like packages. 2026-05-13T19:10:55,238 ******************************************************************************** 2026-05-13T19:10:55,239 !! 2026-05-13T19:10:55,239 check.warn(importable) 2026-05-13T19:10:55,240 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.odgi' is absent from the `packages` configuration. 2026-05-13T19:10:55,240 !! 2026-05-13T19:10:55,241 ******************************************************************************** 2026-05-13T19:10:55,241 ############################ 2026-05-13T19:10:55,242 # Package would be ignored # 2026-05-13T19:10:55,242 ############################ 2026-05-13T19:10:55,242 Python recognizes 'multiqc.modules.odgi' as an importable package[^1], 2026-05-13T19:10:55,243 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,244 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,244 package, please make sure that 'multiqc.modules.odgi' is explicitly added 2026-05-13T19:10:55,244 to the `packages` configuration field. 2026-05-13T19:10:55,245 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,246 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,247 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,248 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,249 If you don't want 'multiqc.modules.odgi' to be distributed and are 2026-05-13T19:10:55,249 already explicitly excluding 'multiqc.modules.odgi' via 2026-05-13T19:10:55,250 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,250 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,251 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,252 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,253 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,254 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,254 even if it does not contain any `.py` files. 2026-05-13T19:10:55,255 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,255 directory, all directories are treated like packages. 2026-05-13T19:10:55,256 ******************************************************************************** 2026-05-13T19:10:55,257 !! 2026-05-13T19:10:55,257 check.warn(importable) 2026-05-13T19:10:55,258 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.optitype' is absent from the `packages` configuration. 2026-05-13T19:10:55,258 !! 2026-05-13T19:10:55,259 ******************************************************************************** 2026-05-13T19:10:55,259 ############################ 2026-05-13T19:10:55,260 # Package would be ignored # 2026-05-13T19:10:55,260 ############################ 2026-05-13T19:10:55,260 Python recognizes 'multiqc.modules.optitype' as an importable package[^1], 2026-05-13T19:10:55,261 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,261 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,262 package, please make sure that 'multiqc.modules.optitype' is explicitly added 2026-05-13T19:10:55,262 to the `packages` configuration field. 2026-05-13T19:10:55,263 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,263 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,264 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,265 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,266 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,267 If you don't want 'multiqc.modules.optitype' to be distributed and are 2026-05-13T19:10:55,267 already explicitly excluding 'multiqc.modules.optitype' via 2026-05-13T19:10:55,268 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,268 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,269 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,270 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,270 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,272 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,272 even if it does not contain any `.py` files. 2026-05-13T19:10:55,272 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,273 directory, all directories are treated like packages. 2026-05-13T19:10:55,273 ******************************************************************************** 2026-05-13T19:10:55,274 !! 2026-05-13T19:10:55,275 check.warn(importable) 2026-05-13T19:10:55,275 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pairtools' is absent from the `packages` configuration. 2026-05-13T19:10:55,276 !! 2026-05-13T19:10:55,276 ******************************************************************************** 2026-05-13T19:10:55,277 ############################ 2026-05-13T19:10:55,277 # Package would be ignored # 2026-05-13T19:10:55,278 ############################ 2026-05-13T19:10:55,278 Python recognizes 'multiqc.modules.pairtools' as an importable package[^1], 2026-05-13T19:10:55,279 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,280 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,280 package, please make sure that 'multiqc.modules.pairtools' is explicitly added 2026-05-13T19:10:55,280 to the `packages` configuration field. 2026-05-13T19:10:55,281 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,282 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,282 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,283 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,283 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,284 If you don't want 'multiqc.modules.pairtools' to be distributed and are 2026-05-13T19:10:55,284 already explicitly excluding 'multiqc.modules.pairtools' via 2026-05-13T19:10:55,285 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,285 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,285 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,286 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,287 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,288 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,288 even if it does not contain any `.py` files. 2026-05-13T19:10:55,289 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,289 directory, all directories are treated like packages. 2026-05-13T19:10:55,290 ******************************************************************************** 2026-05-13T19:10:55,290 !! 2026-05-13T19:10:55,291 check.warn(importable) 2026-05-13T19:10:55,291 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pangolin' is absent from the `packages` configuration. 2026-05-13T19:10:55,292 !! 2026-05-13T19:10:55,292 ******************************************************************************** 2026-05-13T19:10:55,293 ############################ 2026-05-13T19:10:55,293 # Package would be ignored # 2026-05-13T19:10:55,294 ############################ 2026-05-13T19:10:55,294 Python recognizes 'multiqc.modules.pangolin' as an importable package[^1], 2026-05-13T19:10:55,294 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,295 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,296 package, please make sure that 'multiqc.modules.pangolin' is explicitly added 2026-05-13T19:10:55,296 to the `packages` configuration field. 2026-05-13T19:10:55,297 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,298 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,298 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,299 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,300 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,301 If you don't want 'multiqc.modules.pangolin' to be distributed and are 2026-05-13T19:10:55,302 already explicitly excluding 'multiqc.modules.pangolin' via 2026-05-13T19:10:55,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,303 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,303 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,304 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,305 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,306 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,306 even if it does not contain any `.py` files. 2026-05-13T19:10:55,307 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,307 directory, all directories are treated like packages. 2026-05-13T19:10:55,307 ******************************************************************************** 2026-05-13T19:10:55,308 !! 2026-05-13T19:10:55,308 check.warn(importable) 2026-05-13T19:10:55,309 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pbmarkdup' is absent from the `packages` configuration. 2026-05-13T19:10:55,309 !! 2026-05-13T19:10:55,310 ******************************************************************************** 2026-05-13T19:10:55,310 ############################ 2026-05-13T19:10:55,311 # Package would be ignored # 2026-05-13T19:10:55,311 ############################ 2026-05-13T19:10:55,311 Python recognizes 'multiqc.modules.pbmarkdup' as an importable package[^1], 2026-05-13T19:10:55,312 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,312 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,313 package, please make sure that 'multiqc.modules.pbmarkdup' is explicitly added 2026-05-13T19:10:55,313 to the `packages` configuration field. 2026-05-13T19:10:55,314 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,315 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,316 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,316 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,317 If you don't want 'multiqc.modules.pbmarkdup' to be distributed and are 2026-05-13T19:10:55,318 already explicitly excluding 'multiqc.modules.pbmarkdup' via 2026-05-13T19:10:55,318 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,318 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,319 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,320 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,321 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,322 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,322 even if it does not contain any `.py` files. 2026-05-13T19:10:55,323 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,323 directory, all directories are treated like packages. 2026-05-13T19:10:55,324 ******************************************************************************** 2026-05-13T19:10:55,325 !! 2026-05-13T19:10:55,325 check.warn(importable) 2026-05-13T19:10:55,325 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.peddy' is absent from the `packages` configuration. 2026-05-13T19:10:55,326 !! 2026-05-13T19:10:55,327 ******************************************************************************** 2026-05-13T19:10:55,327 ############################ 2026-05-13T19:10:55,328 # Package would be ignored # 2026-05-13T19:10:55,328 ############################ 2026-05-13T19:10:55,329 Python recognizes 'multiqc.modules.peddy' as an importable package[^1], 2026-05-13T19:10:55,329 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,330 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,330 package, please make sure that 'multiqc.modules.peddy' is explicitly added 2026-05-13T19:10:55,330 to the `packages` configuration field. 2026-05-13T19:10:55,331 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,331 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,334 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,335 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,335 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,336 If you don't want 'multiqc.modules.peddy' to be distributed and are 2026-05-13T19:10:55,337 already explicitly excluding 'multiqc.modules.peddy' via 2026-05-13T19:10:55,337 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,337 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,338 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,339 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,339 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,341 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,341 even if it does not contain any `.py` files. 2026-05-13T19:10:55,341 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,342 directory, all directories are treated like packages. 2026-05-13T19:10:55,342 ******************************************************************************** 2026-05-13T19:10:55,343 !! 2026-05-13T19:10:55,344 check.warn(importable) 2026-05-13T19:10:55,344 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.percolator' is absent from the `packages` configuration. 2026-05-13T19:10:55,344 !! 2026-05-13T19:10:55,345 ******************************************************************************** 2026-05-13T19:10:55,346 ############################ 2026-05-13T19:10:55,346 # Package would be ignored # 2026-05-13T19:10:55,347 ############################ 2026-05-13T19:10:55,347 Python recognizes 'multiqc.modules.percolator' as an importable package[^1], 2026-05-13T19:10:55,347 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,349 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,349 package, please make sure that 'multiqc.modules.percolator' is explicitly added 2026-05-13T19:10:55,350 to the `packages` configuration field. 2026-05-13T19:10:55,351 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,351 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,352 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,353 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,354 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,354 If you don't want 'multiqc.modules.percolator' to be distributed and are 2026-05-13T19:10:55,355 already explicitly excluding 'multiqc.modules.percolator' via 2026-05-13T19:10:55,355 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,356 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,356 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,357 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,358 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,359 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,359 even if it does not contain any `.py` files. 2026-05-13T19:10:55,359 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,360 directory, all directories are treated like packages. 2026-05-13T19:10:55,360 ******************************************************************************** 2026-05-13T19:10:55,361 !! 2026-05-13T19:10:55,361 check.warn(importable) 2026-05-13T19:10:55,362 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.phantompeakqualtools' is absent from the `packages` configuration. 2026-05-13T19:10:55,362 !! 2026-05-13T19:10:55,363 ******************************************************************************** 2026-05-13T19:10:55,363 ############################ 2026-05-13T19:10:55,364 # Package would be ignored # 2026-05-13T19:10:55,364 ############################ 2026-05-13T19:10:55,364 Python recognizes 'multiqc.modules.phantompeakqualtools' as an importable package[^1], 2026-05-13T19:10:55,365 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,366 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,366 package, please make sure that 'multiqc.modules.phantompeakqualtools' is explicitly added 2026-05-13T19:10:55,366 to the `packages` configuration field. 2026-05-13T19:10:55,367 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,368 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,368 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,369 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,370 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,371 If you don't want 'multiqc.modules.phantompeakqualtools' to be distributed and are 2026-05-13T19:10:55,371 already explicitly excluding 'multiqc.modules.phantompeakqualtools' via 2026-05-13T19:10:55,372 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,372 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,372 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,373 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,374 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,375 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,376 even if it does not contain any `.py` files. 2026-05-13T19:10:55,376 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,377 directory, all directories are treated like packages. 2026-05-13T19:10:55,377 ******************************************************************************** 2026-05-13T19:10:55,378 !! 2026-05-13T19:10:55,379 check.warn(importable) 2026-05-13T19:10:55,379 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.picard' is absent from the `packages` configuration. 2026-05-13T19:10:55,379 !! 2026-05-13T19:10:55,380 ******************************************************************************** 2026-05-13T19:10:55,380 ############################ 2026-05-13T19:10:55,381 # Package would be ignored # 2026-05-13T19:10:55,381 ############################ 2026-05-13T19:10:55,381 Python recognizes 'multiqc.modules.picard' as an importable package[^1], 2026-05-13T19:10:55,382 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,383 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,383 package, please make sure that 'multiqc.modules.picard' is explicitly added 2026-05-13T19:10:55,383 to the `packages` configuration field. 2026-05-13T19:10:55,384 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,385 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,385 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,386 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,386 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,387 If you don't want 'multiqc.modules.picard' to be distributed and are 2026-05-13T19:10:55,388 already explicitly excluding 'multiqc.modules.picard' via 2026-05-13T19:10:55,388 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,389 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,389 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,390 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,391 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,392 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,392 even if it does not contain any `.py` files. 2026-05-13T19:10:55,393 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,393 directory, all directories are treated like packages. 2026-05-13T19:10:55,393 ******************************************************************************** 2026-05-13T19:10:55,394 !! 2026-05-13T19:10:55,395 check.warn(importable) 2026-05-13T19:10:55,395 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.picard.tests' is absent from the `packages` configuration. 2026-05-13T19:10:55,395 !! 2026-05-13T19:10:55,396 ******************************************************************************** 2026-05-13T19:10:55,397 ############################ 2026-05-13T19:10:55,397 # Package would be ignored # 2026-05-13T19:10:55,398 ############################ 2026-05-13T19:10:55,398 Python recognizes 'multiqc.modules.picard.tests' as an importable package[^1], 2026-05-13T19:10:55,398 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,399 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,400 package, please make sure that 'multiqc.modules.picard.tests' is explicitly added 2026-05-13T19:10:55,400 to the `packages` configuration field. 2026-05-13T19:10:55,401 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,402 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,402 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,403 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,404 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,405 If you don't want 'multiqc.modules.picard.tests' to be distributed and are 2026-05-13T19:10:55,405 already explicitly excluding 'multiqc.modules.picard.tests' via 2026-05-13T19:10:55,405 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,406 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,406 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,407 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,407 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,409 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,409 even if it does not contain any `.py` files. 2026-05-13T19:10:55,409 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,410 directory, all directories are treated like packages. 2026-05-13T19:10:55,410 ******************************************************************************** 2026-05-13T19:10:55,411 !! 2026-05-13T19:10:55,411 check.warn(importable) 2026-05-13T19:10:55,412 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.porechop' is absent from the `packages` configuration. 2026-05-13T19:10:55,412 !! 2026-05-13T19:10:55,413 ******************************************************************************** 2026-05-13T19:10:55,413 ############################ 2026-05-13T19:10:55,414 # Package would be ignored # 2026-05-13T19:10:55,414 ############################ 2026-05-13T19:10:55,415 Python recognizes 'multiqc.modules.porechop' as an importable package[^1], 2026-05-13T19:10:55,415 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,416 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,417 package, please make sure that 'multiqc.modules.porechop' is explicitly added 2026-05-13T19:10:55,417 to the `packages` configuration field. 2026-05-13T19:10:55,418 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,419 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,419 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,420 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,421 If you don't want 'multiqc.modules.porechop' to be distributed and are 2026-05-13T19:10:55,422 already explicitly excluding 'multiqc.modules.porechop' via 2026-05-13T19:10:55,422 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,423 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,423 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,424 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,425 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,426 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,426 even if it does not contain any `.py` files. 2026-05-13T19:10:55,427 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,427 directory, all directories are treated like packages. 2026-05-13T19:10:55,428 ******************************************************************************** 2026-05-13T19:10:55,428 !! 2026-05-13T19:10:55,429 check.warn(importable) 2026-05-13T19:10:55,429 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.preseq' is absent from the `packages` configuration. 2026-05-13T19:10:55,429 !! 2026-05-13T19:10:55,430 ******************************************************************************** 2026-05-13T19:10:55,430 ############################ 2026-05-13T19:10:55,431 # Package would be ignored # 2026-05-13T19:10:55,431 ############################ 2026-05-13T19:10:55,431 Python recognizes 'multiqc.modules.preseq' as an importable package[^1], 2026-05-13T19:10:55,432 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,432 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,433 package, please make sure that 'multiqc.modules.preseq' is explicitly added 2026-05-13T19:10:55,433 to the `packages` configuration field. 2026-05-13T19:10:55,434 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,434 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,435 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,436 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,436 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,437 If you don't want 'multiqc.modules.preseq' to be distributed and are 2026-05-13T19:10:55,438 already explicitly excluding 'multiqc.modules.preseq' via 2026-05-13T19:10:55,438 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,439 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,439 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,440 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,441 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,442 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,442 even if it does not contain any `.py` files. 2026-05-13T19:10:55,443 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,443 directory, all directories are treated like packages. 2026-05-13T19:10:55,444 ******************************************************************************** 2026-05-13T19:10:55,445 !! 2026-05-13T19:10:55,445 check.warn(importable) 2026-05-13T19:10:55,445 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.prinseqplusplus' is absent from the `packages` configuration. 2026-05-13T19:10:55,446 !! 2026-05-13T19:10:55,447 ******************************************************************************** 2026-05-13T19:10:55,447 ############################ 2026-05-13T19:10:55,447 # Package would be ignored # 2026-05-13T19:10:55,448 ############################ 2026-05-13T19:10:55,448 Python recognizes 'multiqc.modules.prinseqplusplus' as an importable package[^1], 2026-05-13T19:10:55,449 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,450 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,450 package, please make sure that 'multiqc.modules.prinseqplusplus' is explicitly added 2026-05-13T19:10:55,450 to the `packages` configuration field. 2026-05-13T19:10:55,451 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,451 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,452 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,452 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,453 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,454 If you don't want 'multiqc.modules.prinseqplusplus' to be distributed and are 2026-05-13T19:10:55,454 already explicitly excluding 'multiqc.modules.prinseqplusplus' via 2026-05-13T19:10:55,455 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,455 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,456 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,456 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,457 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,458 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,459 even if it does not contain any `.py` files. 2026-05-13T19:10:55,459 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,459 directory, all directories are treated like packages. 2026-05-13T19:10:55,460 ******************************************************************************** 2026-05-13T19:10:55,461 !! 2026-05-13T19:10:55,461 check.warn(importable) 2026-05-13T19:10:55,462 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.prokka' is absent from the `packages` configuration. 2026-05-13T19:10:55,462 !! 2026-05-13T19:10:55,463 ******************************************************************************** 2026-05-13T19:10:55,463 ############################ 2026-05-13T19:10:55,464 # Package would be ignored # 2026-05-13T19:10:55,464 ############################ 2026-05-13T19:10:55,465 Python recognizes 'multiqc.modules.prokka' as an importable package[^1], 2026-05-13T19:10:55,465 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,466 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,467 package, please make sure that 'multiqc.modules.prokka' is explicitly added 2026-05-13T19:10:55,467 to the `packages` configuration field. 2026-05-13T19:10:55,468 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,469 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,469 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,470 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,471 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,472 If you don't want 'multiqc.modules.prokka' to be distributed and are 2026-05-13T19:10:55,472 already explicitly excluding 'multiqc.modules.prokka' via 2026-05-13T19:10:55,473 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,473 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,474 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,475 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,475 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,477 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,477 even if it does not contain any `.py` files. 2026-05-13T19:10:55,477 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,478 directory, all directories are treated like packages. 2026-05-13T19:10:55,478 ******************************************************************************** 2026-05-13T19:10:55,479 !! 2026-05-13T19:10:55,479 check.warn(importable) 2026-05-13T19:10:55,480 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.purple' is absent from the `packages` configuration. 2026-05-13T19:10:55,480 !! 2026-05-13T19:10:55,481 ******************************************************************************** 2026-05-13T19:10:55,481 ############################ 2026-05-13T19:10:55,482 # Package would be ignored # 2026-05-13T19:10:55,482 ############################ 2026-05-13T19:10:55,482 Python recognizes 'multiqc.modules.purple' as an importable package[^1], 2026-05-13T19:10:55,483 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,484 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,484 package, please make sure that 'multiqc.modules.purple' is explicitly added 2026-05-13T19:10:55,484 to the `packages` configuration field. 2026-05-13T19:10:55,485 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,486 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,486 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,487 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,488 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,489 If you don't want 'multiqc.modules.purple' to be distributed and are 2026-05-13T19:10:55,489 already explicitly excluding 'multiqc.modules.purple' via 2026-05-13T19:10:55,490 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,490 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,490 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,491 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,492 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,493 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,494 even if it does not contain any `.py` files. 2026-05-13T19:10:55,494 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,495 directory, all directories are treated like packages. 2026-05-13T19:10:55,495 ******************************************************************************** 2026-05-13T19:10:55,496 !! 2026-05-13T19:10:55,497 check.warn(importable) 2026-05-13T19:10:55,497 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pychopper' is absent from the `packages` configuration. 2026-05-13T19:10:55,497 !! 2026-05-13T19:10:55,498 ******************************************************************************** 2026-05-13T19:10:55,499 ############################ 2026-05-13T19:10:55,499 # Package would be ignored # 2026-05-13T19:10:55,500 ############################ 2026-05-13T19:10:55,500 Python recognizes 'multiqc.modules.pychopper' as an importable package[^1], 2026-05-13T19:10:55,500 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,501 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,501 package, please make sure that 'multiqc.modules.pychopper' is explicitly added 2026-05-13T19:10:55,502 to the `packages` configuration field. 2026-05-13T19:10:55,502 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,503 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,503 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,504 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,505 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,505 If you don't want 'multiqc.modules.pychopper' to be distributed and are 2026-05-13T19:10:55,506 already explicitly excluding 'multiqc.modules.pychopper' via 2026-05-13T19:10:55,506 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,507 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,507 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,508 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,509 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,510 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,510 even if it does not contain any `.py` files. 2026-05-13T19:10:55,511 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,511 directory, all directories are treated like packages. 2026-05-13T19:10:55,512 ******************************************************************************** 2026-05-13T19:10:55,512 !! 2026-05-13T19:10:55,513 check.warn(importable) 2026-05-13T19:10:55,513 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pycoqc' is absent from the `packages` configuration. 2026-05-13T19:10:55,514 !! 2026-05-13T19:10:55,515 ******************************************************************************** 2026-05-13T19:10:55,515 ############################ 2026-05-13T19:10:55,515 # Package would be ignored # 2026-05-13T19:10:55,516 ############################ 2026-05-13T19:10:55,516 Python recognizes 'multiqc.modules.pycoqc' as an importable package[^1], 2026-05-13T19:10:55,517 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,517 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,518 package, please make sure that 'multiqc.modules.pycoqc' is explicitly added 2026-05-13T19:10:55,518 to the `packages` configuration field. 2026-05-13T19:10:55,519 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,520 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,520 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,521 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,522 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,522 If you don't want 'multiqc.modules.pycoqc' to be distributed and are 2026-05-13T19:10:55,523 already explicitly excluding 'multiqc.modules.pycoqc' via 2026-05-13T19:10:55,523 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,523 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,524 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,525 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,525 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,526 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,527 even if it does not contain any `.py` files. 2026-05-13T19:10:55,527 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,528 directory, all directories are treated like packages. 2026-05-13T19:10:55,528 ******************************************************************************** 2026-05-13T19:10:55,529 !! 2026-05-13T19:10:55,529 check.warn(importable) 2026-05-13T19:10:55,530 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qc3C' is absent from the `packages` configuration. 2026-05-13T19:10:55,532 !! 2026-05-13T19:10:55,533 ******************************************************************************** 2026-05-13T19:10:55,533 ############################ 2026-05-13T19:10:55,533 # Package would be ignored # 2026-05-13T19:10:55,534 ############################ 2026-05-13T19:10:55,534 Python recognizes 'multiqc.modules.qc3C' as an importable package[^1], 2026-05-13T19:10:55,535 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,535 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,536 package, please make sure that 'multiqc.modules.qc3C' is explicitly added 2026-05-13T19:10:55,536 to the `packages` configuration field. 2026-05-13T19:10:55,537 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,538 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,538 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,539 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,540 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,541 If you don't want 'multiqc.modules.qc3C' to be distributed and are 2026-05-13T19:10:55,541 already explicitly excluding 'multiqc.modules.qc3C' via 2026-05-13T19:10:55,542 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,542 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,543 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,544 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,544 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,546 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,546 even if it does not contain any `.py` files. 2026-05-13T19:10:55,547 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,547 directory, all directories are treated like packages. 2026-05-13T19:10:55,548 ******************************************************************************** 2026-05-13T19:10:55,548 !! 2026-05-13T19:10:55,549 check.warn(importable) 2026-05-13T19:10:55,549 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qorts' is absent from the `packages` configuration. 2026-05-13T19:10:55,549 !! 2026-05-13T19:10:55,550 ******************************************************************************** 2026-05-13T19:10:55,550 ############################ 2026-05-13T19:10:55,551 # Package would be ignored # 2026-05-13T19:10:55,551 ############################ 2026-05-13T19:10:55,551 Python recognizes 'multiqc.modules.qorts' as an importable package[^1], 2026-05-13T19:10:55,552 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,553 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,553 package, please make sure that 'multiqc.modules.qorts' is explicitly added 2026-05-13T19:10:55,553 to the `packages` configuration field. 2026-05-13T19:10:55,554 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,554 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,555 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,555 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,556 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,557 If you don't want 'multiqc.modules.qorts' to be distributed and are 2026-05-13T19:10:55,557 already explicitly excluding 'multiqc.modules.qorts' via 2026-05-13T19:10:55,558 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,558 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,559 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,560 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,560 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,562 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,562 even if it does not contain any `.py` files. 2026-05-13T19:10:55,563 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,563 directory, all directories are treated like packages. 2026-05-13T19:10:55,563 ******************************************************************************** 2026-05-13T19:10:55,564 !! 2026-05-13T19:10:55,565 check.warn(importable) 2026-05-13T19:10:55,565 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qualimap' is absent from the `packages` configuration. 2026-05-13T19:10:55,566 !! 2026-05-13T19:10:55,566 ******************************************************************************** 2026-05-13T19:10:55,567 ############################ 2026-05-13T19:10:55,567 # Package would be ignored # 2026-05-13T19:10:55,568 ############################ 2026-05-13T19:10:55,568 Python recognizes 'multiqc.modules.qualimap' as an importable package[^1], 2026-05-13T19:10:55,569 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,570 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,571 package, please make sure that 'multiqc.modules.qualimap' is explicitly added 2026-05-13T19:10:55,571 to the `packages` configuration field. 2026-05-13T19:10:55,572 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,572 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,573 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,573 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,574 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,575 If you don't want 'multiqc.modules.qualimap' to be distributed and are 2026-05-13T19:10:55,575 already explicitly excluding 'multiqc.modules.qualimap' via 2026-05-13T19:10:55,575 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,576 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,576 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,577 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,578 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,579 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,579 even if it does not contain any `.py` files. 2026-05-13T19:10:55,580 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,580 directory, all directories are treated like packages. 2026-05-13T19:10:55,581 ******************************************************************************** 2026-05-13T19:10:55,581 !! 2026-05-13T19:10:55,582 check.warn(importable) 2026-05-13T19:10:55,582 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.quast' is absent from the `packages` configuration. 2026-05-13T19:10:55,583 !! 2026-05-13T19:10:55,583 ******************************************************************************** 2026-05-13T19:10:55,584 ############################ 2026-05-13T19:10:55,584 # Package would be ignored # 2026-05-13T19:10:55,585 ############################ 2026-05-13T19:10:55,585 Python recognizes 'multiqc.modules.quast' as an importable package[^1], 2026-05-13T19:10:55,585 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,586 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,587 package, please make sure that 'multiqc.modules.quast' is explicitly added 2026-05-13T19:10:55,587 to the `packages` configuration field. 2026-05-13T19:10:55,588 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,589 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,589 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,590 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,591 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,592 If you don't want 'multiqc.modules.quast' to be distributed and are 2026-05-13T19:10:55,592 already explicitly excluding 'multiqc.modules.quast' via 2026-05-13T19:10:55,593 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,593 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,594 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,595 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,596 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,597 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,597 even if it does not contain any `.py` files. 2026-05-13T19:10:55,598 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,598 directory, all directories are treated like packages. 2026-05-13T19:10:55,599 ******************************************************************************** 2026-05-13T19:10:55,601 !! 2026-05-13T19:10:55,601 check.warn(importable) 2026-05-13T19:10:55,602 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ribotish' is absent from the `packages` configuration. 2026-05-13T19:10:55,602 !! 2026-05-13T19:10:55,603 ******************************************************************************** 2026-05-13T19:10:55,603 ############################ 2026-05-13T19:10:55,604 # Package would be ignored # 2026-05-13T19:10:55,604 ############################ 2026-05-13T19:10:55,604 Python recognizes 'multiqc.modules.ribotish' as an importable package[^1], 2026-05-13T19:10:55,605 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,606 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,606 package, please make sure that 'multiqc.modules.ribotish' is explicitly added 2026-05-13T19:10:55,606 to the `packages` configuration field. 2026-05-13T19:10:55,607 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,608 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,608 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,609 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,610 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,611 If you don't want 'multiqc.modules.ribotish' to be distributed and are 2026-05-13T19:10:55,611 already explicitly excluding 'multiqc.modules.ribotish' via 2026-05-13T19:10:55,612 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,612 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,612 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,613 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,614 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,616 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,616 even if it does not contain any `.py` files. 2026-05-13T19:10:55,617 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,617 directory, all directories are treated like packages. 2026-05-13T19:10:55,618 ******************************************************************************** 2026-05-13T19:10:55,619 !! 2026-05-13T19:10:55,619 check.warn(importable) 2026-05-13T19:10:55,619 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ribotish.tests' is absent from the `packages` configuration. 2026-05-13T19:10:55,620 !! 2026-05-13T19:10:55,621 ******************************************************************************** 2026-05-13T19:10:55,621 ############################ 2026-05-13T19:10:55,622 # Package would be ignored # 2026-05-13T19:10:55,622 ############################ 2026-05-13T19:10:55,623 Python recognizes 'multiqc.modules.ribotish.tests' as an importable package[^1], 2026-05-13T19:10:55,623 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,624 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,624 package, please make sure that 'multiqc.modules.ribotish.tests' is explicitly added 2026-05-13T19:10:55,625 to the `packages` configuration field. 2026-05-13T19:10:55,626 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,626 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,626 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,627 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,628 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,629 If you don't want 'multiqc.modules.ribotish.tests' to be distributed and are 2026-05-13T19:10:55,629 already explicitly excluding 'multiqc.modules.ribotish.tests' via 2026-05-13T19:10:55,629 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,630 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,630 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,631 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,632 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,633 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,634 even if it does not contain any `.py` files. 2026-05-13T19:10:55,634 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,634 directory, all directories are treated like packages. 2026-05-13T19:10:55,635 ******************************************************************************** 2026-05-13T19:10:55,636 !! 2026-05-13T19:10:55,636 check.warn(importable) 2026-05-13T19:10:55,637 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ribowaltz' is absent from the `packages` configuration. 2026-05-13T19:10:55,637 !! 2026-05-13T19:10:55,638 ******************************************************************************** 2026-05-13T19:10:55,638 ############################ 2026-05-13T19:10:55,639 # Package would be ignored # 2026-05-13T19:10:55,639 ############################ 2026-05-13T19:10:55,640 Python recognizes 'multiqc.modules.ribowaltz' as an importable package[^1], 2026-05-13T19:10:55,640 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,641 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,641 package, please make sure that 'multiqc.modules.ribowaltz' is explicitly added 2026-05-13T19:10:55,642 to the `packages` configuration field. 2026-05-13T19:10:55,643 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,643 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,644 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,644 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,645 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,646 If you don't want 'multiqc.modules.ribowaltz' to be distributed and are 2026-05-13T19:10:55,647 already explicitly excluding 'multiqc.modules.ribowaltz' via 2026-05-13T19:10:55,648 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,648 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,648 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,649 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,650 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,651 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,651 even if it does not contain any `.py` files. 2026-05-13T19:10:55,652 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,652 directory, all directories are treated like packages. 2026-05-13T19:10:55,653 ******************************************************************************** 2026-05-13T19:10:55,653 !! 2026-05-13T19:10:55,654 check.warn(importable) 2026-05-13T19:10:55,654 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.riker' is absent from the `packages` configuration. 2026-05-13T19:10:55,655 !! 2026-05-13T19:10:55,656 ******************************************************************************** 2026-05-13T19:10:55,656 ############################ 2026-05-13T19:10:55,657 # Package would be ignored # 2026-05-13T19:10:55,657 ############################ 2026-05-13T19:10:55,657 Python recognizes 'multiqc.modules.riker' as an importable package[^1], 2026-05-13T19:10:55,658 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,659 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,659 package, please make sure that 'multiqc.modules.riker' is explicitly added 2026-05-13T19:10:55,659 to the `packages` configuration field. 2026-05-13T19:10:55,660 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,661 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,662 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,664 If you don't want 'multiqc.modules.riker' to be distributed and are 2026-05-13T19:10:55,664 already explicitly excluding 'multiqc.modules.riker' via 2026-05-13T19:10:55,664 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,665 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,665 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,666 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,667 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,669 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,671 even if it does not contain any `.py` files. 2026-05-13T19:10:55,671 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,672 directory, all directories are treated like packages. 2026-05-13T19:10:55,672 ******************************************************************************** 2026-05-13T19:10:55,673 !! 2026-05-13T19:10:55,673 check.warn(importable) 2026-05-13T19:10:55,674 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.riker.tests' is absent from the `packages` configuration. 2026-05-13T19:10:55,674 !! 2026-05-13T19:10:55,675 ******************************************************************************** 2026-05-13T19:10:55,675 ############################ 2026-05-13T19:10:55,676 # Package would be ignored # 2026-05-13T19:10:55,676 ############################ 2026-05-13T19:10:55,677 Python recognizes 'multiqc.modules.riker.tests' as an importable package[^1], 2026-05-13T19:10:55,677 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,678 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,678 package, please make sure that 'multiqc.modules.riker.tests' is explicitly added 2026-05-13T19:10:55,678 to the `packages` configuration field. 2026-05-13T19:10:55,679 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,680 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,680 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,681 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,682 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,682 If you don't want 'multiqc.modules.riker.tests' to be distributed and are 2026-05-13T19:10:55,683 already explicitly excluding 'multiqc.modules.riker.tests' via 2026-05-13T19:10:55,683 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,683 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,684 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,685 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,686 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,687 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,687 even if it does not contain any `.py` files. 2026-05-13T19:10:55,688 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,688 directory, all directories are treated like packages. 2026-05-13T19:10:55,689 ******************************************************************************** 2026-05-13T19:10:55,689 !! 2026-05-13T19:10:55,690 check.warn(importable) 2026-05-13T19:10:55,690 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rna_seqc' is absent from the `packages` configuration. 2026-05-13T19:10:55,691 !! 2026-05-13T19:10:55,692 ******************************************************************************** 2026-05-13T19:10:55,692 ############################ 2026-05-13T19:10:55,692 # Package would be ignored # 2026-05-13T19:10:55,693 ############################ 2026-05-13T19:10:55,693 Python recognizes 'multiqc.modules.rna_seqc' as an importable package[^1], 2026-05-13T19:10:55,694 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,695 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,695 package, please make sure that 'multiqc.modules.rna_seqc' is explicitly added 2026-05-13T19:10:55,696 to the `packages` configuration field. 2026-05-13T19:10:55,697 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,697 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,698 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,699 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,699 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,700 If you don't want 'multiqc.modules.rna_seqc' to be distributed and are 2026-05-13T19:10:55,700 already explicitly excluding 'multiqc.modules.rna_seqc' via 2026-05-13T19:10:55,701 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,701 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,701 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,702 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,703 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,704 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,704 even if it does not contain any `.py` files. 2026-05-13T19:10:55,705 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,705 directory, all directories are treated like packages. 2026-05-13T19:10:55,706 ******************************************************************************** 2026-05-13T19:10:55,706 !! 2026-05-13T19:10:55,707 check.warn(importable) 2026-05-13T19:10:55,707 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rockhopper' is absent from the `packages` configuration. 2026-05-13T19:10:55,708 !! 2026-05-13T19:10:55,708 ******************************************************************************** 2026-05-13T19:10:55,709 ############################ 2026-05-13T19:10:55,709 # Package would be ignored # 2026-05-13T19:10:55,710 ############################ 2026-05-13T19:10:55,710 Python recognizes 'multiqc.modules.rockhopper' as an importable package[^1], 2026-05-13T19:10:55,711 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,712 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,712 package, please make sure that 'multiqc.modules.rockhopper' is explicitly added 2026-05-13T19:10:55,712 to the `packages` configuration field. 2026-05-13T19:10:55,713 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,714 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,714 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,715 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,716 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,717 If you don't want 'multiqc.modules.rockhopper' to be distributed and are 2026-05-13T19:10:55,717 already explicitly excluding 'multiqc.modules.rockhopper' via 2026-05-13T19:10:55,718 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,718 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,719 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,720 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,721 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,722 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,723 even if it does not contain any `.py` files. 2026-05-13T19:10:55,723 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,724 directory, all directories are treated like packages. 2026-05-13T19:10:55,724 ******************************************************************************** 2026-05-13T19:10:55,725 !! 2026-05-13T19:10:55,725 check.warn(importable) 2026-05-13T19:10:55,725 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rsem' is absent from the `packages` configuration. 2026-05-13T19:10:55,726 !! 2026-05-13T19:10:55,727 ******************************************************************************** 2026-05-13T19:10:55,727 ############################ 2026-05-13T19:10:55,727 # Package would be ignored # 2026-05-13T19:10:55,728 ############################ 2026-05-13T19:10:55,728 Python recognizes 'multiqc.modules.rsem' as an importable package[^1], 2026-05-13T19:10:55,729 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,729 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,730 package, please make sure that 'multiqc.modules.rsem' is explicitly added 2026-05-13T19:10:55,730 to the `packages` configuration field. 2026-05-13T19:10:55,731 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,731 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,732 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,733 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,734 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,734 If you don't want 'multiqc.modules.rsem' to be distributed and are 2026-05-13T19:10:55,735 already explicitly excluding 'multiqc.modules.rsem' via 2026-05-13T19:10:55,735 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,736 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,736 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,737 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,738 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,740 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,740 even if it does not contain any `.py` files. 2026-05-13T19:10:55,741 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,741 directory, all directories are treated like packages. 2026-05-13T19:10:55,742 ******************************************************************************** 2026-05-13T19:10:55,742 !! 2026-05-13T19:10:55,743 check.warn(importable) 2026-05-13T19:10:55,743 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rseqc' is absent from the `packages` configuration. 2026-05-13T19:10:55,744 !! 2026-05-13T19:10:55,745 ******************************************************************************** 2026-05-13T19:10:55,745 ############################ 2026-05-13T19:10:55,746 # Package would be ignored # 2026-05-13T19:10:55,746 ############################ 2026-05-13T19:10:55,747 Python recognizes 'multiqc.modules.rseqc' as an importable package[^1], 2026-05-13T19:10:55,747 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,748 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,749 package, please make sure that 'multiqc.modules.rseqc' is explicitly added 2026-05-13T19:10:55,749 to the `packages` configuration field. 2026-05-13T19:10:55,750 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,751 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,751 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,752 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,753 If you don't want 'multiqc.modules.rseqc' to be distributed and are 2026-05-13T19:10:55,753 already explicitly excluding 'multiqc.modules.rseqc' via 2026-05-13T19:10:55,754 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,754 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,754 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,755 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,756 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,757 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,758 even if it does not contain any `.py` files. 2026-05-13T19:10:55,758 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,759 directory, all directories are treated like packages. 2026-05-13T19:10:55,759 ******************************************************************************** 2026-05-13T19:10:55,760 !! 2026-05-13T19:10:55,760 check.warn(importable) 2026-05-13T19:10:55,761 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.salmon' is absent from the `packages` configuration. 2026-05-13T19:10:55,761 !! 2026-05-13T19:10:55,762 ******************************************************************************** 2026-05-13T19:10:55,763 ############################ 2026-05-13T19:10:55,763 # Package would be ignored # 2026-05-13T19:10:55,764 ############################ 2026-05-13T19:10:55,764 Python recognizes 'multiqc.modules.salmon' as an importable package[^1], 2026-05-13T19:10:55,765 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,766 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,766 package, please make sure that 'multiqc.modules.salmon' is explicitly added 2026-05-13T19:10:55,767 to the `packages` configuration field. 2026-05-13T19:10:55,768 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,769 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,770 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,770 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,771 If you don't want 'multiqc.modules.salmon' to be distributed and are 2026-05-13T19:10:55,772 already explicitly excluding 'multiqc.modules.salmon' via 2026-05-13T19:10:55,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,773 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,773 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,774 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,775 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,776 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,777 even if it does not contain any `.py` files. 2026-05-13T19:10:55,777 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,777 directory, all directories are treated like packages. 2026-05-13T19:10:55,778 ******************************************************************************** 2026-05-13T19:10:55,778 !! 2026-05-13T19:10:55,779 check.warn(importable) 2026-05-13T19:10:55,779 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sambamba' is absent from the `packages` configuration. 2026-05-13T19:10:55,780 !! 2026-05-13T19:10:55,780 ******************************************************************************** 2026-05-13T19:10:55,781 ############################ 2026-05-13T19:10:55,781 # Package would be ignored # 2026-05-13T19:10:55,782 ############################ 2026-05-13T19:10:55,782 Python recognizes 'multiqc.modules.sambamba' as an importable package[^1], 2026-05-13T19:10:55,782 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,783 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,784 package, please make sure that 'multiqc.modules.sambamba' is explicitly added 2026-05-13T19:10:55,784 to the `packages` configuration field. 2026-05-13T19:10:55,785 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,785 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,786 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,787 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,788 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,789 If you don't want 'multiqc.modules.sambamba' to be distributed and are 2026-05-13T19:10:55,789 already explicitly excluding 'multiqc.modules.sambamba' via 2026-05-13T19:10:55,790 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,790 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,791 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,792 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,792 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,794 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,794 even if it does not contain any `.py` files. 2026-05-13T19:10:55,795 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,795 directory, all directories are treated like packages. 2026-05-13T19:10:55,796 ******************************************************************************** 2026-05-13T19:10:55,797 !! 2026-05-13T19:10:55,797 check.warn(importable) 2026-05-13T19:10:55,798 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samblaster' is absent from the `packages` configuration. 2026-05-13T19:10:55,798 !! 2026-05-13T19:10:55,799 ******************************************************************************** 2026-05-13T19:10:55,800 ############################ 2026-05-13T19:10:55,800 # Package would be ignored # 2026-05-13T19:10:55,801 ############################ 2026-05-13T19:10:55,801 Python recognizes 'multiqc.modules.samblaster' as an importable package[^1], 2026-05-13T19:10:55,802 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,802 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,803 package, please make sure that 'multiqc.modules.samblaster' is explicitly added 2026-05-13T19:10:55,803 to the `packages` configuration field. 2026-05-13T19:10:55,804 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,804 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,805 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,806 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,807 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,808 If you don't want 'multiqc.modules.samblaster' to be distributed and are 2026-05-13T19:10:55,808 already explicitly excluding 'multiqc.modules.samblaster' via 2026-05-13T19:10:55,809 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,810 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,810 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,811 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,812 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,813 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,814 even if it does not contain any `.py` files. 2026-05-13T19:10:55,814 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,815 directory, all directories are treated like packages. 2026-05-13T19:10:55,815 ******************************************************************************** 2026-05-13T19:10:55,816 !! 2026-05-13T19:10:55,817 check.warn(importable) 2026-05-13T19:10:55,817 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samtools' is absent from the `packages` configuration. 2026-05-13T19:10:55,818 !! 2026-05-13T19:10:55,819 ******************************************************************************** 2026-05-13T19:10:55,819 ############################ 2026-05-13T19:10:55,819 # Package would be ignored # 2026-05-13T19:10:55,820 ############################ 2026-05-13T19:10:55,820 Python recognizes 'multiqc.modules.samtools' as an importable package[^1], 2026-05-13T19:10:55,821 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,822 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,822 package, please make sure that 'multiqc.modules.samtools' is explicitly added 2026-05-13T19:10:55,823 to the `packages` configuration field. 2026-05-13T19:10:55,824 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,824 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,825 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,826 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,827 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,828 If you don't want 'multiqc.modules.samtools' to be distributed and are 2026-05-13T19:10:55,829 already explicitly excluding 'multiqc.modules.samtools' via 2026-05-13T19:10:55,829 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,829 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,830 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,831 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,831 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,833 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,833 even if it does not contain any `.py` files. 2026-05-13T19:10:55,833 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,834 directory, all directories are treated like packages. 2026-05-13T19:10:55,834 ******************************************************************************** 2026-05-13T19:10:55,835 !! 2026-05-13T19:10:55,835 check.warn(importable) 2026-05-13T19:10:55,836 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samtools.tests' is absent from the `packages` configuration. 2026-05-13T19:10:55,836 !! 2026-05-13T19:10:55,837 ******************************************************************************** 2026-05-13T19:10:55,838 ############################ 2026-05-13T19:10:55,838 # Package would be ignored # 2026-05-13T19:10:55,838 ############################ 2026-05-13T19:10:55,839 Python recognizes 'multiqc.modules.samtools.tests' as an importable package[^1], 2026-05-13T19:10:55,839 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,840 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,841 package, please make sure that 'multiqc.modules.samtools.tests' is explicitly added 2026-05-13T19:10:55,841 to the `packages` configuration field. 2026-05-13T19:10:55,842 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,843 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,843 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,844 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,845 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,846 If you don't want 'multiqc.modules.samtools.tests' to be distributed and are 2026-05-13T19:10:55,846 already explicitly excluding 'multiqc.modules.samtools.tests' via 2026-05-13T19:10:55,847 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,847 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,848 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,849 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,850 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,851 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,852 even if it does not contain any `.py` files. 2026-05-13T19:10:55,852 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,853 directory, all directories are treated like packages. 2026-05-13T19:10:55,853 ******************************************************************************** 2026-05-13T19:10:55,855 !! 2026-05-13T19:10:55,855 check.warn(importable) 2026-05-13T19:10:55,855 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sargasso' is absent from the `packages` configuration. 2026-05-13T19:10:55,856 !! 2026-05-13T19:10:55,856 ******************************************************************************** 2026-05-13T19:10:55,857 ############################ 2026-05-13T19:10:55,857 # Package would be ignored # 2026-05-13T19:10:55,857 ############################ 2026-05-13T19:10:55,858 Python recognizes 'multiqc.modules.sargasso' as an importable package[^1], 2026-05-13T19:10:55,858 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,859 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,859 package, please make sure that 'multiqc.modules.sargasso' is explicitly added 2026-05-13T19:10:55,860 to the `packages` configuration field. 2026-05-13T19:10:55,860 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,861 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,861 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,862 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,863 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,864 If you don't want 'multiqc.modules.sargasso' to be distributed and are 2026-05-13T19:10:55,864 already explicitly excluding 'multiqc.modules.sargasso' via 2026-05-13T19:10:55,864 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,865 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,865 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,866 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,867 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,868 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,869 even if it does not contain any `.py` files. 2026-05-13T19:10:55,869 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,870 directory, all directories are treated like packages. 2026-05-13T19:10:55,870 ******************************************************************************** 2026-05-13T19:10:55,871 !! 2026-05-13T19:10:55,871 check.warn(importable) 2026-05-13T19:10:55,872 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqera_cli' is absent from the `packages` configuration. 2026-05-13T19:10:55,872 !! 2026-05-13T19:10:55,873 ******************************************************************************** 2026-05-13T19:10:55,874 ############################ 2026-05-13T19:10:55,874 # Package would be ignored # 2026-05-13T19:10:55,875 ############################ 2026-05-13T19:10:55,875 Python recognizes 'multiqc.modules.seqera_cli' as an importable package[^1], 2026-05-13T19:10:55,876 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,877 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,877 package, please make sure that 'multiqc.modules.seqera_cli' is explicitly added 2026-05-13T19:10:55,878 to the `packages` configuration field. 2026-05-13T19:10:55,879 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,879 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,880 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,881 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,881 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,882 If you don't want 'multiqc.modules.seqera_cli' to be distributed and are 2026-05-13T19:10:55,883 already explicitly excluding 'multiqc.modules.seqera_cli' via 2026-05-13T19:10:55,883 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,883 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,884 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,885 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,885 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,886 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,887 even if it does not contain any `.py` files. 2026-05-13T19:10:55,887 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,887 directory, all directories are treated like packages. 2026-05-13T19:10:55,888 ******************************************************************************** 2026-05-13T19:10:55,889 !! 2026-05-13T19:10:55,889 check.warn(importable) 2026-05-13T19:10:55,889 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqfu' is absent from the `packages` configuration. 2026-05-13T19:10:55,890 !! 2026-05-13T19:10:55,891 ******************************************************************************** 2026-05-13T19:10:55,891 ############################ 2026-05-13T19:10:55,891 # Package would be ignored # 2026-05-13T19:10:55,892 ############################ 2026-05-13T19:10:55,892 Python recognizes 'multiqc.modules.seqfu' as an importable package[^1], 2026-05-13T19:10:55,893 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,893 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,894 package, please make sure that 'multiqc.modules.seqfu' is explicitly added 2026-05-13T19:10:55,894 to the `packages` configuration field. 2026-05-13T19:10:55,895 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,896 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,896 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,897 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,898 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,899 If you don't want 'multiqc.modules.seqfu' to be distributed and are 2026-05-13T19:10:55,899 already explicitly excluding 'multiqc.modules.seqfu' via 2026-05-13T19:10:55,900 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,900 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,901 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,901 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,902 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,903 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,904 even if it does not contain any `.py` files. 2026-05-13T19:10:55,904 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,905 directory, all directories are treated like packages. 2026-05-13T19:10:55,905 ******************************************************************************** 2026-05-13T19:10:55,906 !! 2026-05-13T19:10:55,906 check.warn(importable) 2026-05-13T19:10:55,906 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqfu.test' is absent from the `packages` configuration. 2026-05-13T19:10:55,907 !! 2026-05-13T19:10:55,907 ******************************************************************************** 2026-05-13T19:10:55,908 ############################ 2026-05-13T19:10:55,908 # Package would be ignored # 2026-05-13T19:10:55,909 ############################ 2026-05-13T19:10:55,909 Python recognizes 'multiqc.modules.seqfu.test' as an importable package[^1], 2026-05-13T19:10:55,909 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,910 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,910 package, please make sure that 'multiqc.modules.seqfu.test' is explicitly added 2026-05-13T19:10:55,911 to the `packages` configuration field. 2026-05-13T19:10:55,912 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,912 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,913 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,914 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,915 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,916 If you don't want 'multiqc.modules.seqfu.test' to be distributed and are 2026-05-13T19:10:55,916 already explicitly excluding 'multiqc.modules.seqfu.test' via 2026-05-13T19:10:55,917 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,917 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,917 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,918 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,919 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,921 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,922 even if it does not contain any `.py` files. 2026-05-13T19:10:55,922 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,923 directory, all directories are treated like packages. 2026-05-13T19:10:55,924 ******************************************************************************** 2026-05-13T19:10:55,925 !! 2026-05-13T19:10:55,925 check.warn(importable) 2026-05-13T19:10:55,926 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqkit' is absent from the `packages` configuration. 2026-05-13T19:10:55,926 !! 2026-05-13T19:10:55,927 ******************************************************************************** 2026-05-13T19:10:55,928 ############################ 2026-05-13T19:10:55,928 # Package would be ignored # 2026-05-13T19:10:55,928 ############################ 2026-05-13T19:10:55,929 Python recognizes 'multiqc.modules.seqkit' as an importable package[^1], 2026-05-13T19:10:55,929 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,930 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,931 package, please make sure that 'multiqc.modules.seqkit' is explicitly added 2026-05-13T19:10:55,931 to the `packages` configuration field. 2026-05-13T19:10:55,932 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,932 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,932 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,933 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,934 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,934 If you don't want 'multiqc.modules.seqkit' to be distributed and are 2026-05-13T19:10:55,935 already explicitly excluding 'multiqc.modules.seqkit' via 2026-05-13T19:10:55,935 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,936 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,936 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,937 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,937 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,939 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,939 even if it does not contain any `.py` files. 2026-05-13T19:10:55,940 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,940 directory, all directories are treated like packages. 2026-05-13T19:10:55,940 ******************************************************************************** 2026-05-13T19:10:55,941 !! 2026-05-13T19:10:55,942 check.warn(importable) 2026-05-13T19:10:55,942 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqkit.tests' is absent from the `packages` configuration. 2026-05-13T19:10:55,942 !! 2026-05-13T19:10:55,943 ******************************************************************************** 2026-05-13T19:10:55,944 ############################ 2026-05-13T19:10:55,944 # Package would be ignored # 2026-05-13T19:10:55,945 ############################ 2026-05-13T19:10:55,945 Python recognizes 'multiqc.modules.seqkit.tests' as an importable package[^1], 2026-05-13T19:10:55,945 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,946 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,947 package, please make sure that 'multiqc.modules.seqkit.tests' is explicitly added 2026-05-13T19:10:55,947 to the `packages` configuration field. 2026-05-13T19:10:55,948 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,948 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,949 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,950 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,951 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,952 If you don't want 'multiqc.modules.seqkit.tests' to be distributed and are 2026-05-13T19:10:55,952 already explicitly excluding 'multiqc.modules.seqkit.tests' via 2026-05-13T19:10:55,953 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,953 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,954 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,954 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,955 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,956 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,956 even if it does not contain any `.py` files. 2026-05-13T19:10:55,957 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,957 directory, all directories are treated like packages. 2026-05-13T19:10:55,957 ******************************************************************************** 2026-05-13T19:10:55,958 !! 2026-05-13T19:10:55,959 check.warn(importable) 2026-05-13T19:10:55,959 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sequali' is absent from the `packages` configuration. 2026-05-13T19:10:55,959 !! 2026-05-13T19:10:55,960 ******************************************************************************** 2026-05-13T19:10:55,961 ############################ 2026-05-13T19:10:55,961 # Package would be ignored # 2026-05-13T19:10:55,961 ############################ 2026-05-13T19:10:55,962 Python recognizes 'multiqc.modules.sequali' as an importable package[^1], 2026-05-13T19:10:55,962 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,963 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,963 package, please make sure that 'multiqc.modules.sequali' is explicitly added 2026-05-13T19:10:55,964 to the `packages` configuration field. 2026-05-13T19:10:55,965 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,965 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,966 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,966 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,967 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,968 If you don't want 'multiqc.modules.sequali' to be distributed and are 2026-05-13T19:10:55,969 already explicitly excluding 'multiqc.modules.sequali' via 2026-05-13T19:10:55,969 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,970 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,970 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,971 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,972 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,974 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,974 even if it does not contain any `.py` files. 2026-05-13T19:10:55,974 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,975 directory, all directories are treated like packages. 2026-05-13T19:10:55,975 ******************************************************************************** 2026-05-13T19:10:55,976 !! 2026-05-13T19:10:55,977 check.warn(importable) 2026-05-13T19:10:55,977 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqwho' is absent from the `packages` configuration. 2026-05-13T19:10:55,978 !! 2026-05-13T19:10:55,978 ******************************************************************************** 2026-05-13T19:10:55,979 ############################ 2026-05-13T19:10:55,979 # Package would be ignored # 2026-05-13T19:10:55,980 ############################ 2026-05-13T19:10:55,980 Python recognizes 'multiqc.modules.seqwho' as an importable package[^1], 2026-05-13T19:10:55,980 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,981 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:55,981 package, please make sure that 'multiqc.modules.seqwho' is explicitly added 2026-05-13T19:10:55,982 to the `packages` configuration field. 2026-05-13T19:10:55,982 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:55,983 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:55,983 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:55,984 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:55,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:55,985 If you don't want 'multiqc.modules.seqwho' to be distributed and are 2026-05-13T19:10:55,985 already explicitly excluding 'multiqc.modules.seqwho' via 2026-05-13T19:10:55,986 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:55,986 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:55,987 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:55,987 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:55,988 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:55,990 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:55,990 even if it does not contain any `.py` files. 2026-05-13T19:10:55,991 On the other hand, currently there is no concept of package data 2026-05-13T19:10:55,991 directory, all directories are treated like packages. 2026-05-13T19:10:55,992 ******************************************************************************** 2026-05-13T19:10:55,993 !! 2026-05-13T19:10:55,994 check.warn(importable) 2026-05-13T19:10:55,994 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqyclean' is absent from the `packages` configuration. 2026-05-13T19:10:55,995 !! 2026-05-13T19:10:55,996 ******************************************************************************** 2026-05-13T19:10:55,997 ############################ 2026-05-13T19:10:55,997 # Package would be ignored # 2026-05-13T19:10:55,997 ############################ 2026-05-13T19:10:55,998 Python recognizes 'multiqc.modules.seqyclean' as an importable package[^1], 2026-05-13T19:10:55,998 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:55,999 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,000 package, please make sure that 'multiqc.modules.seqyclean' is explicitly added 2026-05-13T19:10:56,000 to the `packages` configuration field. 2026-05-13T19:10:56,002 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,002 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,003 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,004 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,005 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,006 If you don't want 'multiqc.modules.seqyclean' to be distributed and are 2026-05-13T19:10:56,007 already explicitly excluding 'multiqc.modules.seqyclean' via 2026-05-13T19:10:56,007 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,008 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,008 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,009 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,010 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,011 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,011 even if it does not contain any `.py` files. 2026-05-13T19:10:56,012 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,012 directory, all directories are treated like packages. 2026-05-13T19:10:56,013 ******************************************************************************** 2026-05-13T19:10:56,013 !! 2026-05-13T19:10:56,014 check.warn(importable) 2026-05-13T19:10:56,014 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sexdeterrmine' is absent from the `packages` configuration. 2026-05-13T19:10:56,015 !! 2026-05-13T19:10:56,016 ******************************************************************************** 2026-05-13T19:10:56,016 ############################ 2026-05-13T19:10:56,016 # Package would be ignored # 2026-05-13T19:10:56,017 ############################ 2026-05-13T19:10:56,017 Python recognizes 'multiqc.modules.sexdeterrmine' as an importable package[^1], 2026-05-13T19:10:56,018 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,019 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,019 package, please make sure that 'multiqc.modules.sexdeterrmine' is explicitly added 2026-05-13T19:10:56,020 to the `packages` configuration field. 2026-05-13T19:10:56,021 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,022 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,022 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,023 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,024 If you don't want 'multiqc.modules.sexdeterrmine' to be distributed and are 2026-05-13T19:10:56,025 already explicitly excluding 'multiqc.modules.sexdeterrmine' via 2026-05-13T19:10:56,025 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,025 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,026 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,027 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,028 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,029 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,029 even if it does not contain any `.py` files. 2026-05-13T19:10:56,030 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,031 directory, all directories are treated like packages. 2026-05-13T19:10:56,031 ******************************************************************************** 2026-05-13T19:10:56,032 !! 2026-05-13T19:10:56,032 check.warn(importable) 2026-05-13T19:10:56,032 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sickle' is absent from the `packages` configuration. 2026-05-13T19:10:56,033 !! 2026-05-13T19:10:56,033 ******************************************************************************** 2026-05-13T19:10:56,034 ############################ 2026-05-13T19:10:56,034 # Package would be ignored # 2026-05-13T19:10:56,034 ############################ 2026-05-13T19:10:56,035 Python recognizes 'multiqc.modules.sickle' as an importable package[^1], 2026-05-13T19:10:56,035 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,036 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,036 package, please make sure that 'multiqc.modules.sickle' is explicitly added 2026-05-13T19:10:56,036 to the `packages` configuration field. 2026-05-13T19:10:56,037 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,038 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,038 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,039 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,040 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,040 If you don't want 'multiqc.modules.sickle' to be distributed and are 2026-05-13T19:10:56,041 already explicitly excluding 'multiqc.modules.sickle' via 2026-05-13T19:10:56,041 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,042 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,042 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,043 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,044 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,045 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,045 even if it does not contain any `.py` files. 2026-05-13T19:10:56,046 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,046 directory, all directories are treated like packages. 2026-05-13T19:10:56,047 ******************************************************************************** 2026-05-13T19:10:56,047 !! 2026-05-13T19:10:56,048 check.warn(importable) 2026-05-13T19:10:56,048 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sincei' is absent from the `packages` configuration. 2026-05-13T19:10:56,049 !! 2026-05-13T19:10:56,049 ******************************************************************************** 2026-05-13T19:10:56,050 ############################ 2026-05-13T19:10:56,050 # Package would be ignored # 2026-05-13T19:10:56,051 ############################ 2026-05-13T19:10:56,051 Python recognizes 'multiqc.modules.sincei' as an importable package[^1], 2026-05-13T19:10:56,052 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,053 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,053 package, please make sure that 'multiqc.modules.sincei' is explicitly added 2026-05-13T19:10:56,053 to the `packages` configuration field. 2026-05-13T19:10:56,054 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,054 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,055 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,056 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,056 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,057 If you don't want 'multiqc.modules.sincei' to be distributed and are 2026-05-13T19:10:56,057 already explicitly excluding 'multiqc.modules.sincei' via 2026-05-13T19:10:56,058 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,058 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,059 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,060 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,061 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,062 even if it does not contain any `.py` files. 2026-05-13T19:10:56,062 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,063 directory, all directories are treated like packages. 2026-05-13T19:10:56,063 ******************************************************************************** 2026-05-13T19:10:56,064 !! 2026-05-13T19:10:56,064 check.warn(importable) 2026-05-13T19:10:56,065 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.skewer' is absent from the `packages` configuration. 2026-05-13T19:10:56,065 !! 2026-05-13T19:10:56,066 ******************************************************************************** 2026-05-13T19:10:56,067 ############################ 2026-05-13T19:10:56,067 # Package would be ignored # 2026-05-13T19:10:56,067 ############################ 2026-05-13T19:10:56,068 Python recognizes 'multiqc.modules.skewer' as an importable package[^1], 2026-05-13T19:10:56,068 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,069 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,070 package, please make sure that 'multiqc.modules.skewer' is explicitly added 2026-05-13T19:10:56,070 to the `packages` configuration field. 2026-05-13T19:10:56,071 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,072 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,072 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,073 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,074 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,075 If you don't want 'multiqc.modules.skewer' to be distributed and are 2026-05-13T19:10:56,076 already explicitly excluding 'multiqc.modules.skewer' via 2026-05-13T19:10:56,076 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,077 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,077 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,079 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,080 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,081 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,081 even if it does not contain any `.py` files. 2026-05-13T19:10:56,082 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,082 directory, all directories are treated like packages. 2026-05-13T19:10:56,083 ******************************************************************************** 2026-05-13T19:10:56,083 !! 2026-05-13T19:10:56,084 check.warn(importable) 2026-05-13T19:10:56,084 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.slamdunk' is absent from the `packages` configuration. 2026-05-13T19:10:56,084 !! 2026-05-13T19:10:56,085 ******************************************************************************** 2026-05-13T19:10:56,086 ############################ 2026-05-13T19:10:56,086 # Package would be ignored # 2026-05-13T19:10:56,087 ############################ 2026-05-13T19:10:56,087 Python recognizes 'multiqc.modules.slamdunk' as an importable package[^1], 2026-05-13T19:10:56,088 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,089 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,089 package, please make sure that 'multiqc.modules.slamdunk' is explicitly added 2026-05-13T19:10:56,089 to the `packages` configuration field. 2026-05-13T19:10:56,090 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,091 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,091 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,092 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,093 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,094 If you don't want 'multiqc.modules.slamdunk' to be distributed and are 2026-05-13T19:10:56,094 already explicitly excluding 'multiqc.modules.slamdunk' via 2026-05-13T19:10:56,094 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,095 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,095 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,096 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,097 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,098 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,099 even if it does not contain any `.py` files. 2026-05-13T19:10:56,099 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,100 directory, all directories are treated like packages. 2026-05-13T19:10:56,100 ******************************************************************************** 2026-05-13T19:10:56,101 !! 2026-05-13T19:10:56,101 check.warn(importable) 2026-05-13T19:10:56,102 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snippy' is absent from the `packages` configuration. 2026-05-13T19:10:56,102 !! 2026-05-13T19:10:56,103 ******************************************************************************** 2026-05-13T19:10:56,104 ############################ 2026-05-13T19:10:56,104 # Package would be ignored # 2026-05-13T19:10:56,104 ############################ 2026-05-13T19:10:56,105 Python recognizes 'multiqc.modules.snippy' as an importable package[^1], 2026-05-13T19:10:56,105 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,106 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,106 package, please make sure that 'multiqc.modules.snippy' is explicitly added 2026-05-13T19:10:56,106 to the `packages` configuration field. 2026-05-13T19:10:56,107 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,107 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,108 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,108 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,109 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,110 If you don't want 'multiqc.modules.snippy' to be distributed and are 2026-05-13T19:10:56,110 already explicitly excluding 'multiqc.modules.snippy' via 2026-05-13T19:10:56,111 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,111 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,111 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,112 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,113 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,114 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,114 even if it does not contain any `.py` files. 2026-05-13T19:10:56,115 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,115 directory, all directories are treated like packages. 2026-05-13T19:10:56,116 ******************************************************************************** 2026-05-13T19:10:56,116 !! 2026-05-13T19:10:56,117 check.warn(importable) 2026-05-13T19:10:56,117 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snpeff' is absent from the `packages` configuration. 2026-05-13T19:10:56,118 !! 2026-05-13T19:10:56,118 ******************************************************************************** 2026-05-13T19:10:56,119 ############################ 2026-05-13T19:10:56,119 # Package would be ignored # 2026-05-13T19:10:56,120 ############################ 2026-05-13T19:10:56,120 Python recognizes 'multiqc.modules.snpeff' as an importable package[^1], 2026-05-13T19:10:56,120 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,121 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,122 package, please make sure that 'multiqc.modules.snpeff' is explicitly added 2026-05-13T19:10:56,122 to the `packages` configuration field. 2026-05-13T19:10:56,123 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,124 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,124 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,125 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,126 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,127 If you don't want 'multiqc.modules.snpeff' to be distributed and are 2026-05-13T19:10:56,127 already explicitly excluding 'multiqc.modules.snpeff' via 2026-05-13T19:10:56,127 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,128 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,128 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,129 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,130 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,131 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,131 even if it does not contain any `.py` files. 2026-05-13T19:10:56,131 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,132 directory, all directories are treated like packages. 2026-05-13T19:10:56,132 ******************************************************************************** 2026-05-13T19:10:56,133 !! 2026-05-13T19:10:56,133 check.warn(importable) 2026-05-13T19:10:56,134 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snpsplit' is absent from the `packages` configuration. 2026-05-13T19:10:56,134 !! 2026-05-13T19:10:56,135 ******************************************************************************** 2026-05-13T19:10:56,135 ############################ 2026-05-13T19:10:56,136 # Package would be ignored # 2026-05-13T19:10:56,136 ############################ 2026-05-13T19:10:56,137 Python recognizes 'multiqc.modules.snpsplit' as an importable package[^1], 2026-05-13T19:10:56,137 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,138 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,138 package, please make sure that 'multiqc.modules.snpsplit' is explicitly added 2026-05-13T19:10:56,139 to the `packages` configuration field. 2026-05-13T19:10:56,140 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,140 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,141 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,142 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,143 If you don't want 'multiqc.modules.snpsplit' to be distributed and are 2026-05-13T19:10:56,143 already explicitly excluding 'multiqc.modules.snpsplit' via 2026-05-13T19:10:56,144 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,144 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,145 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,146 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,146 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,148 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,148 even if it does not contain any `.py` files. 2026-05-13T19:10:56,149 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,149 directory, all directories are treated like packages. 2026-05-13T19:10:56,150 ******************************************************************************** 2026-05-13T19:10:56,152 !! 2026-05-13T19:10:56,152 check.warn(importable) 2026-05-13T19:10:56,153 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.somalier' is absent from the `packages` configuration. 2026-05-13T19:10:56,153 !! 2026-05-13T19:10:56,155 ******************************************************************************** 2026-05-13T19:10:56,155 ############################ 2026-05-13T19:10:56,156 # Package would be ignored # 2026-05-13T19:10:56,156 ############################ 2026-05-13T19:10:56,156 Python recognizes 'multiqc.modules.somalier' as an importable package[^1], 2026-05-13T19:10:56,157 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,158 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,158 package, please make sure that 'multiqc.modules.somalier' is explicitly added 2026-05-13T19:10:56,159 to the `packages` configuration field. 2026-05-13T19:10:56,160 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,161 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,161 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,162 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,164 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,165 If you don't want 'multiqc.modules.somalier' to be distributed and are 2026-05-13T19:10:56,166 already explicitly excluding 'multiqc.modules.somalier' via 2026-05-13T19:10:56,166 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,167 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,167 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,169 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,170 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,171 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,172 even if it does not contain any `.py` files. 2026-05-13T19:10:56,172 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,173 directory, all directories are treated like packages. 2026-05-13T19:10:56,173 ******************************************************************************** 2026-05-13T19:10:56,174 !! 2026-05-13T19:10:56,175 check.warn(importable) 2026-05-13T19:10:56,175 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sompy' is absent from the `packages` configuration. 2026-05-13T19:10:56,176 !! 2026-05-13T19:10:56,176 ******************************************************************************** 2026-05-13T19:10:56,177 ############################ 2026-05-13T19:10:56,177 # Package would be ignored # 2026-05-13T19:10:56,178 ############################ 2026-05-13T19:10:56,178 Python recognizes 'multiqc.modules.sompy' as an importable package[^1], 2026-05-13T19:10:56,179 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,180 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,180 package, please make sure that 'multiqc.modules.sompy' is explicitly added 2026-05-13T19:10:56,180 to the `packages` configuration field. 2026-05-13T19:10:56,181 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,182 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,182 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,183 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,184 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,184 If you don't want 'multiqc.modules.sompy' to be distributed and are 2026-05-13T19:10:56,185 already explicitly excluding 'multiqc.modules.sompy' via 2026-05-13T19:10:56,185 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,185 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,186 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,186 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,187 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,188 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,189 even if it does not contain any `.py` files. 2026-05-13T19:10:56,189 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,189 directory, all directories are treated like packages. 2026-05-13T19:10:56,190 ******************************************************************************** 2026-05-13T19:10:56,191 !! 2026-05-13T19:10:56,191 check.warn(importable) 2026-05-13T19:10:56,191 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sortmerna' is absent from the `packages` configuration. 2026-05-13T19:10:56,192 !! 2026-05-13T19:10:56,193 ******************************************************************************** 2026-05-13T19:10:56,193 ############################ 2026-05-13T19:10:56,193 # Package would be ignored # 2026-05-13T19:10:56,194 ############################ 2026-05-13T19:10:56,194 Python recognizes 'multiqc.modules.sortmerna' as an importable package[^1], 2026-05-13T19:10:56,195 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,196 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,196 package, please make sure that 'multiqc.modules.sortmerna' is explicitly added 2026-05-13T19:10:56,196 to the `packages` configuration field. 2026-05-13T19:10:56,197 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,198 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,198 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,199 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,200 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,201 If you don't want 'multiqc.modules.sortmerna' to be distributed and are 2026-05-13T19:10:56,201 already explicitly excluding 'multiqc.modules.sortmerna' via 2026-05-13T19:10:56,202 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,202 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,203 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,203 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,204 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,206 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,206 even if it does not contain any `.py` files. 2026-05-13T19:10:56,207 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,207 directory, all directories are treated like packages. 2026-05-13T19:10:56,207 ******************************************************************************** 2026-05-13T19:10:56,208 !! 2026-05-13T19:10:56,208 check.warn(importable) 2026-05-13T19:10:56,209 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sourmash' is absent from the `packages` configuration. 2026-05-13T19:10:56,209 !! 2026-05-13T19:10:56,210 ******************************************************************************** 2026-05-13T19:10:56,210 ############################ 2026-05-13T19:10:56,211 # Package would be ignored # 2026-05-13T19:10:56,211 ############################ 2026-05-13T19:10:56,211 Python recognizes 'multiqc.modules.sourmash' as an importable package[^1], 2026-05-13T19:10:56,212 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,212 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,213 package, please make sure that 'multiqc.modules.sourmash' is explicitly added 2026-05-13T19:10:56,213 to the `packages` configuration field. 2026-05-13T19:10:56,214 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,214 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,215 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,216 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,216 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,217 If you don't want 'multiqc.modules.sourmash' to be distributed and are 2026-05-13T19:10:56,217 already explicitly excluding 'multiqc.modules.sourmash' via 2026-05-13T19:10:56,218 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,218 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,219 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,220 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,220 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,222 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,223 even if it does not contain any `.py` files. 2026-05-13T19:10:56,223 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,224 directory, all directories are treated like packages. 2026-05-13T19:10:56,224 ******************************************************************************** 2026-05-13T19:10:56,225 !! 2026-05-13T19:10:56,226 check.warn(importable) 2026-05-13T19:10:56,226 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.spaceranger' is absent from the `packages` configuration. 2026-05-13T19:10:56,227 !! 2026-05-13T19:10:56,227 ******************************************************************************** 2026-05-13T19:10:56,228 ############################ 2026-05-13T19:10:56,228 # Package would be ignored # 2026-05-13T19:10:56,229 ############################ 2026-05-13T19:10:56,229 Python recognizes 'multiqc.modules.spaceranger' as an importable package[^1], 2026-05-13T19:10:56,230 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,231 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,232 package, please make sure that 'multiqc.modules.spaceranger' is explicitly added 2026-05-13T19:10:56,232 to the `packages` configuration field. 2026-05-13T19:10:56,233 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,234 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,234 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,235 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,236 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,237 If you don't want 'multiqc.modules.spaceranger' to be distributed and are 2026-05-13T19:10:56,238 already explicitly excluding 'multiqc.modules.spaceranger' via 2026-05-13T19:10:56,238 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,239 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,239 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,241 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,242 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,244 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,245 even if it does not contain any `.py` files. 2026-05-13T19:10:56,245 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,246 directory, all directories are treated like packages. 2026-05-13T19:10:56,247 ******************************************************************************** 2026-05-13T19:10:56,248 !! 2026-05-13T19:10:56,249 check.warn(importable) 2026-05-13T19:10:56,250 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.stacks' is absent from the `packages` configuration. 2026-05-13T19:10:56,251 !! 2026-05-13T19:10:56,252 ******************************************************************************** 2026-05-13T19:10:56,252 ############################ 2026-05-13T19:10:56,252 # Package would be ignored # 2026-05-13T19:10:56,253 ############################ 2026-05-13T19:10:56,253 Python recognizes 'multiqc.modules.stacks' as an importable package[^1], 2026-05-13T19:10:56,254 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,255 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,255 package, please make sure that 'multiqc.modules.stacks' is explicitly added 2026-05-13T19:10:56,256 to the `packages` configuration field. 2026-05-13T19:10:56,256 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,257 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,257 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,258 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,259 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,260 If you don't want 'multiqc.modules.stacks' to be distributed and are 2026-05-13T19:10:56,260 already explicitly excluding 'multiqc.modules.stacks' via 2026-05-13T19:10:56,261 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,261 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,262 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,263 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,263 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,264 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,265 even if it does not contain any `.py` files. 2026-05-13T19:10:56,265 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,265 directory, all directories are treated like packages. 2026-05-13T19:10:56,266 ******************************************************************************** 2026-05-13T19:10:56,266 !! 2026-05-13T19:10:56,267 check.warn(importable) 2026-05-13T19:10:56,267 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.star' is absent from the `packages` configuration. 2026-05-13T19:10:56,268 !! 2026-05-13T19:10:56,268 ******************************************************************************** 2026-05-13T19:10:56,269 ############################ 2026-05-13T19:10:56,269 # Package would be ignored # 2026-05-13T19:10:56,270 ############################ 2026-05-13T19:10:56,270 Python recognizes 'multiqc.modules.star' as an importable package[^1], 2026-05-13T19:10:56,270 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,271 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,271 package, please make sure that 'multiqc.modules.star' is explicitly added 2026-05-13T19:10:56,272 to the `packages` configuration field. 2026-05-13T19:10:56,273 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,273 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,274 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,274 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,275 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,276 If you don't want 'multiqc.modules.star' to be distributed and are 2026-05-13T19:10:56,276 already explicitly excluding 'multiqc.modules.star' via 2026-05-13T19:10:56,277 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,277 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,278 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,279 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,279 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,281 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,281 even if it does not contain any `.py` files. 2026-05-13T19:10:56,282 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,282 directory, all directories are treated like packages. 2026-05-13T19:10:56,282 ******************************************************************************** 2026-05-13T19:10:56,283 !! 2026-05-13T19:10:56,284 check.warn(importable) 2026-05-13T19:10:56,284 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.supernova' is absent from the `packages` configuration. 2026-05-13T19:10:56,285 !! 2026-05-13T19:10:56,286 ******************************************************************************** 2026-05-13T19:10:56,286 ############################ 2026-05-13T19:10:56,287 # Package would be ignored # 2026-05-13T19:10:56,287 ############################ 2026-05-13T19:10:56,288 Python recognizes 'multiqc.modules.supernova' as an importable package[^1], 2026-05-13T19:10:56,288 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,289 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,289 package, please make sure that 'multiqc.modules.supernova' is explicitly added 2026-05-13T19:10:56,289 to the `packages` configuration field. 2026-05-13T19:10:56,290 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,291 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,291 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,292 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,293 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,293 If you don't want 'multiqc.modules.supernova' to be distributed and are 2026-05-13T19:10:56,294 already explicitly excluding 'multiqc.modules.supernova' via 2026-05-13T19:10:56,294 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,294 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,295 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,296 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,297 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,299 even if it does not contain any `.py` files. 2026-05-13T19:10:56,299 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,300 directory, all directories are treated like packages. 2026-05-13T19:10:56,300 ******************************************************************************** 2026-05-13T19:10:56,301 !! 2026-05-13T19:10:56,302 check.warn(importable) 2026-05-13T19:10:56,302 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sylphtax' is absent from the `packages` configuration. 2026-05-13T19:10:56,302 !! 2026-05-13T19:10:56,303 ******************************************************************************** 2026-05-13T19:10:56,304 ############################ 2026-05-13T19:10:56,304 # Package would be ignored # 2026-05-13T19:10:56,305 ############################ 2026-05-13T19:10:56,305 Python recognizes 'multiqc.modules.sylphtax' as an importable package[^1], 2026-05-13T19:10:56,306 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,307 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,307 package, please make sure that 'multiqc.modules.sylphtax' is explicitly added 2026-05-13T19:10:56,307 to the `packages` configuration field. 2026-05-13T19:10:56,308 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,309 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,309 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,310 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,311 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,312 If you don't want 'multiqc.modules.sylphtax' to be distributed and are 2026-05-13T19:10:56,312 already explicitly excluding 'multiqc.modules.sylphtax' via 2026-05-13T19:10:56,313 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,313 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,313 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,314 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,316 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,317 even if it does not contain any `.py` files. 2026-05-13T19:10:56,317 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,317 directory, all directories are treated like packages. 2026-05-13T19:10:56,318 ******************************************************************************** 2026-05-13T19:10:56,319 !! 2026-05-13T19:10:56,319 check.warn(importable) 2026-05-13T19:10:56,319 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.telseq' is absent from the `packages` configuration. 2026-05-13T19:10:56,320 !! 2026-05-13T19:10:56,321 ******************************************************************************** 2026-05-13T19:10:56,321 ############################ 2026-05-13T19:10:56,322 # Package would be ignored # 2026-05-13T19:10:56,322 ############################ 2026-05-13T19:10:56,323 Python recognizes 'multiqc.modules.telseq' as an importable package[^1], 2026-05-13T19:10:56,323 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,324 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,324 package, please make sure that 'multiqc.modules.telseq' is explicitly added 2026-05-13T19:10:56,325 to the `packages` configuration field. 2026-05-13T19:10:56,326 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,326 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,327 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,328 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,329 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,330 If you don't want 'multiqc.modules.telseq' to be distributed and are 2026-05-13T19:10:56,331 already explicitly excluding 'multiqc.modules.telseq' via 2026-05-13T19:10:56,332 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,332 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,333 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,334 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,335 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,336 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,337 even if it does not contain any `.py` files. 2026-05-13T19:10:56,337 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,338 directory, all directories are treated like packages. 2026-05-13T19:10:56,338 ******************************************************************************** 2026-05-13T19:10:56,339 !! 2026-05-13T19:10:56,339 check.warn(importable) 2026-05-13T19:10:56,340 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.theta2' is absent from the `packages` configuration. 2026-05-13T19:10:56,340 !! 2026-05-13T19:10:56,341 ******************************************************************************** 2026-05-13T19:10:56,341 ############################ 2026-05-13T19:10:56,341 # Package would be ignored # 2026-05-13T19:10:56,342 ############################ 2026-05-13T19:10:56,342 Python recognizes 'multiqc.modules.theta2' as an importable package[^1], 2026-05-13T19:10:56,343 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,343 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,344 package, please make sure that 'multiqc.modules.theta2' is explicitly added 2026-05-13T19:10:56,344 to the `packages` configuration field. 2026-05-13T19:10:56,345 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,345 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,346 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,347 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,348 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,349 If you don't want 'multiqc.modules.theta2' to be distributed and are 2026-05-13T19:10:56,349 already explicitly excluding 'multiqc.modules.theta2' via 2026-05-13T19:10:56,349 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,350 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,350 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,351 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,352 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,353 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,354 even if it does not contain any `.py` files. 2026-05-13T19:10:56,354 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,355 directory, all directories are treated like packages. 2026-05-13T19:10:56,355 ******************************************************************************** 2026-05-13T19:10:56,356 !! 2026-05-13T19:10:56,356 check.warn(importable) 2026-05-13T19:10:56,357 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.tophat' is absent from the `packages` configuration. 2026-05-13T19:10:56,357 !! 2026-05-13T19:10:56,358 ******************************************************************************** 2026-05-13T19:10:56,359 ############################ 2026-05-13T19:10:56,359 # Package would be ignored # 2026-05-13T19:10:56,359 ############################ 2026-05-13T19:10:56,360 Python recognizes 'multiqc.modules.tophat' as an importable package[^1], 2026-05-13T19:10:56,360 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,361 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,362 package, please make sure that 'multiqc.modules.tophat' is explicitly added 2026-05-13T19:10:56,362 to the `packages` configuration field. 2026-05-13T19:10:56,363 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,363 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,364 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,364 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,365 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,366 If you don't want 'multiqc.modules.tophat' to be distributed and are 2026-05-13T19:10:56,366 already explicitly excluding 'multiqc.modules.tophat' via 2026-05-13T19:10:56,366 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,367 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,367 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,368 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,369 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,370 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,371 even if it does not contain any `.py` files. 2026-05-13T19:10:56,371 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,372 directory, all directories are treated like packages. 2026-05-13T19:10:56,372 ******************************************************************************** 2026-05-13T19:10:56,373 !! 2026-05-13T19:10:56,373 check.warn(importable) 2026-05-13T19:10:56,374 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.trim_galore' is absent from the `packages` configuration. 2026-05-13T19:10:56,374 !! 2026-05-13T19:10:56,375 ******************************************************************************** 2026-05-13T19:10:56,375 ############################ 2026-05-13T19:10:56,376 # Package would be ignored # 2026-05-13T19:10:56,376 ############################ 2026-05-13T19:10:56,376 Python recognizes 'multiqc.modules.trim_galore' as an importable package[^1], 2026-05-13T19:10:56,377 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,378 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,378 package, please make sure that 'multiqc.modules.trim_galore' is explicitly added 2026-05-13T19:10:56,379 to the `packages` configuration field. 2026-05-13T19:10:56,379 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,380 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,380 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,381 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,382 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,383 If you don't want 'multiqc.modules.trim_galore' to be distributed and are 2026-05-13T19:10:56,383 already explicitly excluding 'multiqc.modules.trim_galore' via 2026-05-13T19:10:56,384 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,384 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,385 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,385 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,387 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,388 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,388 even if it does not contain any `.py` files. 2026-05-13T19:10:56,388 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,389 directory, all directories are treated like packages. 2026-05-13T19:10:56,389 ******************************************************************************** 2026-05-13T19:10:56,390 !! 2026-05-13T19:10:56,390 check.warn(importable) 2026-05-13T19:10:56,391 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.trimmomatic' is absent from the `packages` configuration. 2026-05-13T19:10:56,391 !! 2026-05-13T19:10:56,392 ******************************************************************************** 2026-05-13T19:10:56,392 ############################ 2026-05-13T19:10:56,392 # Package would be ignored # 2026-05-13T19:10:56,393 ############################ 2026-05-13T19:10:56,393 Python recognizes 'multiqc.modules.trimmomatic' as an importable package[^1], 2026-05-13T19:10:56,394 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,394 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,395 package, please make sure that 'multiqc.modules.trimmomatic' is explicitly added 2026-05-13T19:10:56,395 to the `packages` configuration field. 2026-05-13T19:10:56,396 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,396 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,397 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,398 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,398 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,399 If you don't want 'multiqc.modules.trimmomatic' to be distributed and are 2026-05-13T19:10:56,400 already explicitly excluding 'multiqc.modules.trimmomatic' via 2026-05-13T19:10:56,400 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,400 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,401 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,402 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,403 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,404 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,404 even if it does not contain any `.py` files. 2026-05-13T19:10:56,405 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,405 directory, all directories are treated like packages. 2026-05-13T19:10:56,406 ******************************************************************************** 2026-05-13T19:10:56,407 !! 2026-05-13T19:10:56,407 check.warn(importable) 2026-05-13T19:10:56,408 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.truvari' is absent from the `packages` configuration. 2026-05-13T19:10:56,408 !! 2026-05-13T19:10:56,409 ******************************************************************************** 2026-05-13T19:10:56,409 ############################ 2026-05-13T19:10:56,410 # Package would be ignored # 2026-05-13T19:10:56,410 ############################ 2026-05-13T19:10:56,411 Python recognizes 'multiqc.modules.truvari' as an importable package[^1], 2026-05-13T19:10:56,411 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,412 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,412 package, please make sure that 'multiqc.modules.truvari' is explicitly added 2026-05-13T19:10:56,412 to the `packages` configuration field. 2026-05-13T19:10:56,413 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,413 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,414 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,415 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,415 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,416 If you don't want 'multiqc.modules.truvari' to be distributed and are 2026-05-13T19:10:56,416 already explicitly excluding 'multiqc.modules.truvari' via 2026-05-13T19:10:56,417 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,417 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,417 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,418 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,419 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,420 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,421 even if it does not contain any `.py` files. 2026-05-13T19:10:56,421 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,422 directory, all directories are treated like packages. 2026-05-13T19:10:56,422 ******************************************************************************** 2026-05-13T19:10:56,423 !! 2026-05-13T19:10:56,423 check.warn(importable) 2026-05-13T19:10:56,423 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.umicollapse' is absent from the `packages` configuration. 2026-05-13T19:10:56,424 !! 2026-05-13T19:10:56,425 ******************************************************************************** 2026-05-13T19:10:56,425 ############################ 2026-05-13T19:10:56,426 # Package would be ignored # 2026-05-13T19:10:56,426 ############################ 2026-05-13T19:10:56,426 Python recognizes 'multiqc.modules.umicollapse' as an importable package[^1], 2026-05-13T19:10:56,427 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,428 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,428 package, please make sure that 'multiqc.modules.umicollapse' is explicitly added 2026-05-13T19:10:56,429 to the `packages` configuration field. 2026-05-13T19:10:56,430 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,430 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,430 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,431 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,432 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,433 If you don't want 'multiqc.modules.umicollapse' to be distributed and are 2026-05-13T19:10:56,434 already explicitly excluding 'multiqc.modules.umicollapse' via 2026-05-13T19:10:56,434 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,435 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,435 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,436 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,437 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,438 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,438 even if it does not contain any `.py` files. 2026-05-13T19:10:56,439 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,439 directory, all directories are treated like packages. 2026-05-13T19:10:56,439 ******************************************************************************** 2026-05-13T19:10:56,440 !! 2026-05-13T19:10:56,440 check.warn(importable) 2026-05-13T19:10:56,441 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.umicollapse.tests' is absent from the `packages` configuration. 2026-05-13T19:10:56,441 !! 2026-05-13T19:10:56,442 ******************************************************************************** 2026-05-13T19:10:56,442 ############################ 2026-05-13T19:10:56,443 # Package would be ignored # 2026-05-13T19:10:56,443 ############################ 2026-05-13T19:10:56,444 Python recognizes 'multiqc.modules.umicollapse.tests' as an importable package[^1], 2026-05-13T19:10:56,444 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,445 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,445 package, please make sure that 'multiqc.modules.umicollapse.tests' is explicitly added 2026-05-13T19:10:56,446 to the `packages` configuration field. 2026-05-13T19:10:56,446 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,447 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,447 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,448 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,449 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,450 If you don't want 'multiqc.modules.umicollapse.tests' to be distributed and are 2026-05-13T19:10:56,450 already explicitly excluding 'multiqc.modules.umicollapse.tests' via 2026-05-13T19:10:56,451 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,451 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,452 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,453 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,453 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,455 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,455 even if it does not contain any `.py` files. 2026-05-13T19:10:56,456 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,456 directory, all directories are treated like packages. 2026-05-13T19:10:56,457 ******************************************************************************** 2026-05-13T19:10:56,458 !! 2026-05-13T19:10:56,458 check.warn(importable) 2026-05-13T19:10:56,459 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.umitools' is absent from the `packages` configuration. 2026-05-13T19:10:56,459 !! 2026-05-13T19:10:56,460 ******************************************************************************** 2026-05-13T19:10:56,460 ############################ 2026-05-13T19:10:56,460 # Package would be ignored # 2026-05-13T19:10:56,461 ############################ 2026-05-13T19:10:56,461 Python recognizes 'multiqc.modules.umitools' as an importable package[^1], 2026-05-13T19:10:56,462 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,462 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,463 package, please make sure that 'multiqc.modules.umitools' is explicitly added 2026-05-13T19:10:56,463 to the `packages` configuration field. 2026-05-13T19:10:56,464 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,464 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,465 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,465 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,466 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,467 If you don't want 'multiqc.modules.umitools' to be distributed and are 2026-05-13T19:10:56,467 already explicitly excluding 'multiqc.modules.umitools' via 2026-05-13T19:10:56,468 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,468 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,469 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,470 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,470 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,472 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,472 even if it does not contain any `.py` files. 2026-05-13T19:10:56,473 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,473 directory, all directories are treated like packages. 2026-05-13T19:10:56,474 ******************************************************************************** 2026-05-13T19:10:56,474 !! 2026-05-13T19:10:56,475 check.warn(importable) 2026-05-13T19:10:56,475 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.umitools.tests' is absent from the `packages` configuration. 2026-05-13T19:10:56,476 !! 2026-05-13T19:10:56,477 ******************************************************************************** 2026-05-13T19:10:56,477 ############################ 2026-05-13T19:10:56,478 # Package would be ignored # 2026-05-13T19:10:56,478 ############################ 2026-05-13T19:10:56,478 Python recognizes 'multiqc.modules.umitools.tests' as an importable package[^1], 2026-05-13T19:10:56,479 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,480 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,480 package, please make sure that 'multiqc.modules.umitools.tests' is explicitly added 2026-05-13T19:10:56,481 to the `packages` configuration field. 2026-05-13T19:10:56,482 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,482 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,483 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,483 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,484 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,485 If you don't want 'multiqc.modules.umitools.tests' to be distributed and are 2026-05-13T19:10:56,485 already explicitly excluding 'multiqc.modules.umitools.tests' via 2026-05-13T19:10:56,486 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,486 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,486 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,487 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,488 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,489 even if it does not contain any `.py` files. 2026-05-13T19:10:56,490 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,490 directory, all directories are treated like packages. 2026-05-13T19:10:56,491 ******************************************************************************** 2026-05-13T19:10:56,491 !! 2026-05-13T19:10:56,492 check.warn(importable) 2026-05-13T19:10:56,492 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.varscan2' is absent from the `packages` configuration. 2026-05-13T19:10:56,493 !! 2026-05-13T19:10:56,494 ******************************************************************************** 2026-05-13T19:10:56,494 ############################ 2026-05-13T19:10:56,494 # Package would be ignored # 2026-05-13T19:10:56,495 ############################ 2026-05-13T19:10:56,495 Python recognizes 'multiqc.modules.varscan2' as an importable package[^1], 2026-05-13T19:10:56,496 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,497 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,497 package, please make sure that 'multiqc.modules.varscan2' is explicitly added 2026-05-13T19:10:56,498 to the `packages` configuration field. 2026-05-13T19:10:56,499 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,500 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,500 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,501 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,502 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,503 If you don't want 'multiqc.modules.varscan2' to be distributed and are 2026-05-13T19:10:56,504 already explicitly excluding 'multiqc.modules.varscan2' via 2026-05-13T19:10:56,504 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,505 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,505 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,506 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,507 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,509 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,509 even if it does not contain any `.py` files. 2026-05-13T19:10:56,510 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,510 directory, all directories are treated like packages. 2026-05-13T19:10:56,510 ******************************************************************************** 2026-05-13T19:10:56,511 !! 2026-05-13T19:10:56,512 check.warn(importable) 2026-05-13T19:10:56,512 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.vcftools' is absent from the `packages` configuration. 2026-05-13T19:10:56,512 !! 2026-05-13T19:10:56,513 ******************************************************************************** 2026-05-13T19:10:56,513 ############################ 2026-05-13T19:10:56,514 # Package would be ignored # 2026-05-13T19:10:56,514 ############################ 2026-05-13T19:10:56,515 Python recognizes 'multiqc.modules.vcftools' as an importable package[^1], 2026-05-13T19:10:56,515 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,516 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,516 package, please make sure that 'multiqc.modules.vcftools' is explicitly added 2026-05-13T19:10:56,517 to the `packages` configuration field. 2026-05-13T19:10:56,517 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,518 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,518 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,519 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,520 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,521 If you don't want 'multiqc.modules.vcftools' to be distributed and are 2026-05-13T19:10:56,521 already explicitly excluding 'multiqc.modules.vcftools' via 2026-05-13T19:10:56,522 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,522 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,523 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,523 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,524 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,526 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,526 even if it does not contain any `.py` files. 2026-05-13T19:10:56,527 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,527 directory, all directories are treated like packages. 2026-05-13T19:10:56,527 ******************************************************************************** 2026-05-13T19:10:56,528 !! 2026-05-13T19:10:56,529 check.warn(importable) 2026-05-13T19:10:56,529 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.vep' is absent from the `packages` configuration. 2026-05-13T19:10:56,530 !! 2026-05-13T19:10:56,531 ******************************************************************************** 2026-05-13T19:10:56,531 ############################ 2026-05-13T19:10:56,532 # Package would be ignored # 2026-05-13T19:10:56,532 ############################ 2026-05-13T19:10:56,533 Python recognizes 'multiqc.modules.vep' as an importable package[^1], 2026-05-13T19:10:56,533 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,534 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,534 package, please make sure that 'multiqc.modules.vep' is explicitly added 2026-05-13T19:10:56,535 to the `packages` configuration field. 2026-05-13T19:10:56,535 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,536 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,536 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,537 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,538 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,538 If you don't want 'multiqc.modules.vep' to be distributed and are 2026-05-13T19:10:56,539 already explicitly excluding 'multiqc.modules.vep' via 2026-05-13T19:10:56,539 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,540 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,540 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,541 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,542 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,543 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,543 even if it does not contain any `.py` files. 2026-05-13T19:10:56,544 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,544 directory, all directories are treated like packages. 2026-05-13T19:10:56,544 ******************************************************************************** 2026-05-13T19:10:56,545 !! 2026-05-13T19:10:56,546 check.warn(importable) 2026-05-13T19:10:56,546 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.verifybamid' is absent from the `packages` configuration. 2026-05-13T19:10:56,547 !! 2026-05-13T19:10:56,547 ******************************************************************************** 2026-05-13T19:10:56,548 ############################ 2026-05-13T19:10:56,548 # Package would be ignored # 2026-05-13T19:10:56,549 ############################ 2026-05-13T19:10:56,549 Python recognizes 'multiqc.modules.verifybamid' as an importable package[^1], 2026-05-13T19:10:56,550 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,550 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,551 package, please make sure that 'multiqc.modules.verifybamid' is explicitly added 2026-05-13T19:10:56,551 to the `packages` configuration field. 2026-05-13T19:10:56,552 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,553 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,553 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,554 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,555 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,556 If you don't want 'multiqc.modules.verifybamid' to be distributed and are 2026-05-13T19:10:56,556 already explicitly excluding 'multiqc.modules.verifybamid' via 2026-05-13T19:10:56,557 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,557 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,558 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,559 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,559 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,560 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,561 even if it does not contain any `.py` files. 2026-05-13T19:10:56,561 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,561 directory, all directories are treated like packages. 2026-05-13T19:10:56,562 ******************************************************************************** 2026-05-13T19:10:56,562 !! 2026-05-13T19:10:56,563 check.warn(importable) 2026-05-13T19:10:56,563 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.vg' is absent from the `packages` configuration. 2026-05-13T19:10:56,564 !! 2026-05-13T19:10:56,564 ******************************************************************************** 2026-05-13T19:10:56,565 ############################ 2026-05-13T19:10:56,565 # Package would be ignored # 2026-05-13T19:10:56,565 ############################ 2026-05-13T19:10:56,566 Python recognizes 'multiqc.modules.vg' as an importable package[^1], 2026-05-13T19:10:56,566 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,567 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,567 package, please make sure that 'multiqc.modules.vg' is explicitly added 2026-05-13T19:10:56,568 to the `packages` configuration field. 2026-05-13T19:10:56,569 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,570 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,570 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,571 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,572 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,573 If you don't want 'multiqc.modules.vg' to be distributed and are 2026-05-13T19:10:56,573 already explicitly excluding 'multiqc.modules.vg' via 2026-05-13T19:10:56,573 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,574 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,574 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,575 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,576 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,577 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,578 even if it does not contain any `.py` files. 2026-05-13T19:10:56,578 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,579 directory, all directories are treated like packages. 2026-05-13T19:10:56,579 ******************************************************************************** 2026-05-13T19:10:56,580 !! 2026-05-13T19:10:56,580 check.warn(importable) 2026-05-13T19:10:56,581 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.whatshap' is absent from the `packages` configuration. 2026-05-13T19:10:56,581 !! 2026-05-13T19:10:56,582 ******************************************************************************** 2026-05-13T19:10:56,582 ############################ 2026-05-13T19:10:56,583 # Package would be ignored # 2026-05-13T19:10:56,583 ############################ 2026-05-13T19:10:56,583 Python recognizes 'multiqc.modules.whatshap' as an importable package[^1], 2026-05-13T19:10:56,584 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,585 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,585 package, please make sure that 'multiqc.modules.whatshap' is explicitly added 2026-05-13T19:10:56,585 to the `packages` configuration field. 2026-05-13T19:10:56,586 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,586 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,587 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,587 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,588 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,589 If you don't want 'multiqc.modules.whatshap' to be distributed and are 2026-05-13T19:10:56,589 already explicitly excluding 'multiqc.modules.whatshap' via 2026-05-13T19:10:56,590 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,590 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,591 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,591 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,592 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,594 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,594 even if it does not contain any `.py` files. 2026-05-13T19:10:56,594 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,595 directory, all directories are treated like packages. 2026-05-13T19:10:56,595 ******************************************************************************** 2026-05-13T19:10:56,596 !! 2026-05-13T19:10:56,596 check.warn(importable) 2026-05-13T19:10:56,597 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.xengsort' is absent from the `packages` configuration. 2026-05-13T19:10:56,597 !! 2026-05-13T19:10:56,598 ******************************************************************************** 2026-05-13T19:10:56,599 ############################ 2026-05-13T19:10:56,599 # Package would be ignored # 2026-05-13T19:10:56,600 ############################ 2026-05-13T19:10:56,600 Python recognizes 'multiqc.modules.xengsort' as an importable package[^1], 2026-05-13T19:10:56,601 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,601 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,602 package, please make sure that 'multiqc.modules.xengsort' is explicitly added 2026-05-13T19:10:56,602 to the `packages` configuration field. 2026-05-13T19:10:56,603 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,603 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,604 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,605 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,606 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,607 If you don't want 'multiqc.modules.xengsort' to be distributed and are 2026-05-13T19:10:56,607 already explicitly excluding 'multiqc.modules.xengsort' via 2026-05-13T19:10:56,607 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,608 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,608 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,609 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,609 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,611 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,611 even if it does not contain any `.py` files. 2026-05-13T19:10:56,611 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,612 directory, all directories are treated like packages. 2026-05-13T19:10:56,612 ******************************************************************************** 2026-05-13T19:10:56,613 !! 2026-05-13T19:10:56,613 check.warn(importable) 2026-05-13T19:10:56,613 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.xenium' is absent from the `packages` configuration. 2026-05-13T19:10:56,614 !! 2026-05-13T19:10:56,615 ******************************************************************************** 2026-05-13T19:10:56,615 ############################ 2026-05-13T19:10:56,615 # Package would be ignored # 2026-05-13T19:10:56,616 ############################ 2026-05-13T19:10:56,616 Python recognizes 'multiqc.modules.xenium' as an importable package[^1], 2026-05-13T19:10:56,617 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,617 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,618 package, please make sure that 'multiqc.modules.xenium' is explicitly added 2026-05-13T19:10:56,618 to the `packages` configuration field. 2026-05-13T19:10:56,619 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,620 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,620 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,621 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,622 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,623 If you don't want 'multiqc.modules.xenium' to be distributed and are 2026-05-13T19:10:56,623 already explicitly excluding 'multiqc.modules.xenium' via 2026-05-13T19:10:56,623 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,624 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,624 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,625 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,626 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,627 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,628 even if it does not contain any `.py` files. 2026-05-13T19:10:56,628 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,629 directory, all directories are treated like packages. 2026-05-13T19:10:56,630 ******************************************************************************** 2026-05-13T19:10:56,630 !! 2026-05-13T19:10:56,631 check.warn(importable) 2026-05-13T19:10:56,631 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.xenome' is absent from the `packages` configuration. 2026-05-13T19:10:56,631 !! 2026-05-13T19:10:56,632 ******************************************************************************** 2026-05-13T19:10:56,632 ############################ 2026-05-13T19:10:56,633 # Package would be ignored # 2026-05-13T19:10:56,633 ############################ 2026-05-13T19:10:56,634 Python recognizes 'multiqc.modules.xenome' as an importable package[^1], 2026-05-13T19:10:56,634 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,635 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,636 package, please make sure that 'multiqc.modules.xenome' is explicitly added 2026-05-13T19:10:56,636 to the `packages` configuration field. 2026-05-13T19:10:56,637 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,637 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,638 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,639 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,639 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,640 If you don't want 'multiqc.modules.xenome' to be distributed and are 2026-05-13T19:10:56,641 already explicitly excluding 'multiqc.modules.xenome' via 2026-05-13T19:10:56,641 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,641 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,642 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,643 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,644 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,645 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,645 even if it does not contain any `.py` files. 2026-05-13T19:10:56,646 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,646 directory, all directories are treated like packages. 2026-05-13T19:10:56,647 ******************************************************************************** 2026-05-13T19:10:56,648 !! 2026-05-13T19:10:56,648 check.warn(importable) 2026-05-13T19:10:56,648 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.plots' is absent from the `packages` configuration. 2026-05-13T19:10:56,649 !! 2026-05-13T19:10:56,650 ******************************************************************************** 2026-05-13T19:10:56,650 ############################ 2026-05-13T19:10:56,651 # Package would be ignored # 2026-05-13T19:10:56,651 ############################ 2026-05-13T19:10:56,652 Python recognizes 'multiqc.plots' as an importable package[^1], 2026-05-13T19:10:56,652 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,653 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,653 package, please make sure that 'multiqc.plots' is explicitly added 2026-05-13T19:10:56,654 to the `packages` configuration field. 2026-05-13T19:10:56,655 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,655 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,656 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,656 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,657 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,658 If you don't want 'multiqc.plots' to be distributed and are 2026-05-13T19:10:56,658 already explicitly excluding 'multiqc.plots' via 2026-05-13T19:10:56,659 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,659 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,659 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,660 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,661 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,662 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,662 even if it does not contain any `.py` files. 2026-05-13T19:10:56,663 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,663 directory, all directories are treated like packages. 2026-05-13T19:10:56,664 ******************************************************************************** 2026-05-13T19:10:56,664 !! 2026-05-13T19:10:56,665 check.warn(importable) 2026-05-13T19:10:56,665 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates' is absent from the `packages` configuration. 2026-05-13T19:10:56,666 !! 2026-05-13T19:10:56,667 ******************************************************************************** 2026-05-13T19:10:56,667 ############################ 2026-05-13T19:10:56,667 # Package would be ignored # 2026-05-13T19:10:56,668 ############################ 2026-05-13T19:10:56,668 Python recognizes 'multiqc.templates' as an importable package[^1], 2026-05-13T19:10:56,669 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,670 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,670 package, please make sure that 'multiqc.templates' is explicitly added 2026-05-13T19:10:56,670 to the `packages` configuration field. 2026-05-13T19:10:56,671 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,672 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,672 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,673 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,674 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,675 If you don't want 'multiqc.templates' to be distributed and are 2026-05-13T19:10:56,675 already explicitly excluding 'multiqc.templates' via 2026-05-13T19:10:56,676 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,676 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,677 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,678 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,678 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,680 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,680 even if it does not contain any `.py` files. 2026-05-13T19:10:56,681 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,681 directory, all directories are treated like packages. 2026-05-13T19:10:56,681 ******************************************************************************** 2026-05-13T19:10:56,682 !! 2026-05-13T19:10:56,682 check.warn(importable) 2026-05-13T19:10:56,683 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default' is absent from the `packages` configuration. 2026-05-13T19:10:56,683 !! 2026-05-13T19:10:56,684 ******************************************************************************** 2026-05-13T19:10:56,684 ############################ 2026-05-13T19:10:56,684 # Package would be ignored # 2026-05-13T19:10:56,685 ############################ 2026-05-13T19:10:56,685 Python recognizes 'multiqc.templates.default' as an importable package[^1], 2026-05-13T19:10:56,685 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,686 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,687 package, please make sure that 'multiqc.templates.default' is explicitly added 2026-05-13T19:10:56,687 to the `packages` configuration field. 2026-05-13T19:10:56,688 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,688 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,689 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,689 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,690 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,691 If you don't want 'multiqc.templates.default' to be distributed and are 2026-05-13T19:10:56,692 already explicitly excluding 'multiqc.templates.default' via 2026-05-13T19:10:56,692 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,692 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,693 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,694 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,694 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,696 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,696 even if it does not contain any `.py` files. 2026-05-13T19:10:56,696 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,697 directory, all directories are treated like packages. 2026-05-13T19:10:56,697 ******************************************************************************** 2026-05-13T19:10:56,698 !! 2026-05-13T19:10:56,699 check.warn(importable) 2026-05-13T19:10:56,699 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.img' is absent from the `packages` configuration. 2026-05-13T19:10:56,699 !! 2026-05-13T19:10:56,700 ******************************************************************************** 2026-05-13T19:10:56,701 ############################ 2026-05-13T19:10:56,701 # Package would be ignored # 2026-05-13T19:10:56,702 ############################ 2026-05-13T19:10:56,702 Python recognizes 'multiqc.templates.default.assets.img' as an importable package[^1], 2026-05-13T19:10:56,703 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,704 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,704 package, please make sure that 'multiqc.templates.default.assets.img' is explicitly added 2026-05-13T19:10:56,705 to the `packages` configuration field. 2026-05-13T19:10:56,706 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,707 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,707 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,708 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,709 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,709 If you don't want 'multiqc.templates.default.assets.img' to be distributed and are 2026-05-13T19:10:56,710 already explicitly excluding 'multiqc.templates.default.assets.img' via 2026-05-13T19:10:56,710 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,710 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,711 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,712 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,712 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,714 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,714 even if it does not contain any `.py` files. 2026-05-13T19:10:56,714 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,715 directory, all directories are treated like packages. 2026-05-13T19:10:56,715 ******************************************************************************** 2026-05-13T19:10:56,716 !! 2026-05-13T19:10:56,717 check.warn(importable) 2026-05-13T19:10:56,717 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.js.packages' is absent from the `packages` configuration. 2026-05-13T19:10:56,717 !! 2026-05-13T19:10:56,718 ******************************************************************************** 2026-05-13T19:10:56,719 ############################ 2026-05-13T19:10:56,719 # Package would be ignored # 2026-05-13T19:10:56,719 ############################ 2026-05-13T19:10:56,720 Python recognizes 'multiqc.templates.default.assets.js.packages' as an importable package[^1], 2026-05-13T19:10:56,720 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,721 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,722 package, please make sure that 'multiqc.templates.default.assets.js.packages' is explicitly added 2026-05-13T19:10:56,722 to the `packages` configuration field. 2026-05-13T19:10:56,723 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,723 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,724 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,725 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,725 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,726 If you don't want 'multiqc.templates.default.assets.js.packages' to be distributed and are 2026-05-13T19:10:56,727 already explicitly excluding 'multiqc.templates.default.assets.js.packages' via 2026-05-13T19:10:56,727 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,728 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,728 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,729 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,730 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,731 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,731 even if it does not contain any `.py` files. 2026-05-13T19:10:56,732 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,732 directory, all directories are treated like packages. 2026-05-13T19:10:56,732 ******************************************************************************** 2026-05-13T19:10:56,733 !! 2026-05-13T19:10:56,734 check.warn(importable) 2026-05-13T19:10:56,734 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.compiled.css' is absent from the `packages` configuration. 2026-05-13T19:10:56,734 !! 2026-05-13T19:10:56,735 ******************************************************************************** 2026-05-13T19:10:56,735 ############################ 2026-05-13T19:10:56,736 # Package would be ignored # 2026-05-13T19:10:56,736 ############################ 2026-05-13T19:10:56,737 Python recognizes 'multiqc.templates.default.compiled.css' as an importable package[^1], 2026-05-13T19:10:56,737 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,738 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,739 package, please make sure that 'multiqc.templates.default.compiled.css' is explicitly added 2026-05-13T19:10:56,739 to the `packages` configuration field. 2026-05-13T19:10:56,740 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,740 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,741 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,742 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,742 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,743 If you don't want 'multiqc.templates.default.compiled.css' to be distributed and are 2026-05-13T19:10:56,744 already explicitly excluding 'multiqc.templates.default.compiled.css' via 2026-05-13T19:10:56,744 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,745 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,745 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,746 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,747 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,748 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,749 even if it does not contain any `.py` files. 2026-05-13T19:10:56,749 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,750 directory, all directories are treated like packages. 2026-05-13T19:10:56,750 ******************************************************************************** 2026-05-13T19:10:56,751 !! 2026-05-13T19:10:56,752 check.warn(importable) 2026-05-13T19:10:56,752 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.compiled.js' is absent from the `packages` configuration. 2026-05-13T19:10:56,752 !! 2026-05-13T19:10:56,753 ******************************************************************************** 2026-05-13T19:10:56,753 ############################ 2026-05-13T19:10:56,754 # Package would be ignored # 2026-05-13T19:10:56,754 ############################ 2026-05-13T19:10:56,754 Python recognizes 'multiqc.templates.default.compiled.js' as an importable package[^1], 2026-05-13T19:10:56,755 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,755 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,756 package, please make sure that 'multiqc.templates.default.compiled.js' is explicitly added 2026-05-13T19:10:56,756 to the `packages` configuration field. 2026-05-13T19:10:56,757 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,757 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,758 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,759 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,761 If you don't want 'multiqc.templates.default.compiled.js' to be distributed and are 2026-05-13T19:10:56,761 already explicitly excluding 'multiqc.templates.default.compiled.js' via 2026-05-13T19:10:56,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,762 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,762 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,763 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,764 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,765 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,766 even if it does not contain any `.py` files. 2026-05-13T19:10:56,766 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,767 directory, all directories are treated like packages. 2026-05-13T19:10:56,767 ******************************************************************************** 2026-05-13T19:10:56,768 !! 2026-05-13T19:10:56,769 check.warn(importable) 2026-05-13T19:10:56,769 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.src.js' is absent from the `packages` configuration. 2026-05-13T19:10:56,770 !! 2026-05-13T19:10:56,771 ******************************************************************************** 2026-05-13T19:10:56,771 ############################ 2026-05-13T19:10:56,772 # Package would be ignored # 2026-05-13T19:10:56,772 ############################ 2026-05-13T19:10:56,773 Python recognizes 'multiqc.templates.default.src.js' as an importable package[^1], 2026-05-13T19:10:56,773 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,774 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,774 package, please make sure that 'multiqc.templates.default.src.js' is explicitly added 2026-05-13T19:10:56,775 to the `packages` configuration field. 2026-05-13T19:10:56,776 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,776 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,776 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,777 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,778 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,779 If you don't want 'multiqc.templates.default.src.js' to be distributed and are 2026-05-13T19:10:56,779 already explicitly excluding 'multiqc.templates.default.src.js' via 2026-05-13T19:10:56,779 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,780 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,780 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,781 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,782 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,783 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,783 even if it does not contain any `.py` files. 2026-05-13T19:10:56,784 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,784 directory, all directories are treated like packages. 2026-05-13T19:10:56,785 ******************************************************************************** 2026-05-13T19:10:56,786 !! 2026-05-13T19:10:56,786 check.warn(importable) 2026-05-13T19:10:56,786 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.src.js.plots' is absent from the `packages` configuration. 2026-05-13T19:10:56,787 !! 2026-05-13T19:10:56,788 ******************************************************************************** 2026-05-13T19:10:56,788 ############################ 2026-05-13T19:10:56,789 # Package would be ignored # 2026-05-13T19:10:56,789 ############################ 2026-05-13T19:10:56,790 Python recognizes 'multiqc.templates.default.src.js.plots' as an importable package[^1], 2026-05-13T19:10:56,790 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,791 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,791 package, please make sure that 'multiqc.templates.default.src.js.plots' is explicitly added 2026-05-13T19:10:56,792 to the `packages` configuration field. 2026-05-13T19:10:56,793 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,793 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,794 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,795 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,796 If you don't want 'multiqc.templates.default.src.js.plots' to be distributed and are 2026-05-13T19:10:56,797 already explicitly excluding 'multiqc.templates.default.src.js.plots' via 2026-05-13T19:10:56,797 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,798 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,798 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,799 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,800 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,801 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,801 even if it does not contain any `.py` files. 2026-05-13T19:10:56,802 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,802 directory, all directories are treated like packages. 2026-05-13T19:10:56,803 ******************************************************************************** 2026-05-13T19:10:56,803 !! 2026-05-13T19:10:56,804 check.warn(importable) 2026-05-13T19:10:56,804 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.src.js.toolbox' is absent from the `packages` configuration. 2026-05-13T19:10:56,804 !! 2026-05-13T19:10:56,805 ******************************************************************************** 2026-05-13T19:10:56,806 ############################ 2026-05-13T19:10:56,806 # Package would be ignored # 2026-05-13T19:10:56,806 ############################ 2026-05-13T19:10:56,807 Python recognizes 'multiqc.templates.default.src.js.toolbox' as an importable package[^1], 2026-05-13T19:10:56,807 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,808 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,808 package, please make sure that 'multiqc.templates.default.src.js.toolbox' is explicitly added 2026-05-13T19:10:56,809 to the `packages` configuration field. 2026-05-13T19:10:56,810 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,810 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,811 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,812 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,813 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,814 If you don't want 'multiqc.templates.default.src.js.toolbox' to be distributed and are 2026-05-13T19:10:56,814 already explicitly excluding 'multiqc.templates.default.src.js.toolbox' via 2026-05-13T19:10:56,814 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,815 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,815 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,816 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,817 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,819 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,819 even if it does not contain any `.py` files. 2026-05-13T19:10:56,820 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,820 directory, all directories are treated like packages. 2026-05-13T19:10:56,820 ******************************************************************************** 2026-05-13T19:10:56,821 !! 2026-05-13T19:10:56,822 check.warn(importable) 2026-05-13T19:10:56,822 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.src.scss' is absent from the `packages` configuration. 2026-05-13T19:10:56,823 !! 2026-05-13T19:10:56,824 ******************************************************************************** 2026-05-13T19:10:56,824 ############################ 2026-05-13T19:10:56,825 # Package would be ignored # 2026-05-13T19:10:56,825 ############################ 2026-05-13T19:10:56,825 Python recognizes 'multiqc.templates.default.src.scss' as an importable package[^1], 2026-05-13T19:10:56,826 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,826 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,827 package, please make sure that 'multiqc.templates.default.src.scss' is explicitly added 2026-05-13T19:10:56,827 to the `packages` configuration field. 2026-05-13T19:10:56,828 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,828 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,829 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,830 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,830 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,831 If you don't want 'multiqc.templates.default.src.scss' to be distributed and are 2026-05-13T19:10:56,831 already explicitly excluding 'multiqc.templates.default.src.scss' via 2026-05-13T19:10:56,832 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,832 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,833 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,834 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,835 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,836 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,837 even if it does not contain any `.py` files. 2026-05-13T19:10:56,837 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,838 directory, all directories are treated like packages. 2026-05-13T19:10:56,838 ******************************************************************************** 2026-05-13T19:10:56,839 !! 2026-05-13T19:10:56,839 check.warn(importable) 2026-05-13T19:10:56,840 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.src.scss.themes.dark' is absent from the `packages` configuration. 2026-05-13T19:10:56,840 !! 2026-05-13T19:10:56,841 ******************************************************************************** 2026-05-13T19:10:56,842 ############################ 2026-05-13T19:10:56,842 # Package would be ignored # 2026-05-13T19:10:56,842 ############################ 2026-05-13T19:10:56,843 Python recognizes 'multiqc.templates.default.src.scss.themes.dark' as an importable package[^1], 2026-05-13T19:10:56,843 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,844 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,845 package, please make sure that 'multiqc.templates.default.src.scss.themes.dark' is explicitly added 2026-05-13T19:10:56,845 to the `packages` configuration field. 2026-05-13T19:10:56,846 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,846 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,847 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,848 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,849 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,850 If you don't want 'multiqc.templates.default.src.scss.themes.dark' to be distributed and are 2026-05-13T19:10:56,850 already explicitly excluding 'multiqc.templates.default.src.scss.themes.dark' via 2026-05-13T19:10:56,850 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,851 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,851 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,852 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,853 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,854 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,854 even if it does not contain any `.py` files. 2026-05-13T19:10:56,855 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,855 directory, all directories are treated like packages. 2026-05-13T19:10:56,855 ******************************************************************************** 2026-05-13T19:10:56,856 !! 2026-05-13T19:10:56,857 check.warn(importable) 2026-05-13T19:10:56,857 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.toolbox' is absent from the `packages` configuration. 2026-05-13T19:10:56,857 !! 2026-05-13T19:10:56,858 ******************************************************************************** 2026-05-13T19:10:56,859 ############################ 2026-05-13T19:10:56,859 # Package would be ignored # 2026-05-13T19:10:56,860 ############################ 2026-05-13T19:10:56,860 Python recognizes 'multiqc.templates.default.toolbox' as an importable package[^1], 2026-05-13T19:10:56,860 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,861 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,862 package, please make sure that 'multiqc.templates.default.toolbox' is explicitly added 2026-05-13T19:10:56,862 to the `packages` configuration field. 2026-05-13T19:10:56,863 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,863 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,864 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,865 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,866 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,867 If you don't want 'multiqc.templates.default.toolbox' to be distributed and are 2026-05-13T19:10:56,867 already explicitly excluding 'multiqc.templates.default.toolbox' via 2026-05-13T19:10:56,868 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,868 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,869 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,870 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,870 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,872 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,872 even if it does not contain any `.py` files. 2026-05-13T19:10:56,873 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,873 directory, all directories are treated like packages. 2026-05-13T19:10:56,874 ******************************************************************************** 2026-05-13T19:10:56,875 !! 2026-05-13T19:10:56,875 check.warn(importable) 2026-05-13T19:10:56,875 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.disco' is absent from the `packages` configuration. 2026-05-13T19:10:56,876 !! 2026-05-13T19:10:56,876 ******************************************************************************** 2026-05-13T19:10:56,877 ############################ 2026-05-13T19:10:56,877 # Package would be ignored # 2026-05-13T19:10:56,878 ############################ 2026-05-13T19:10:56,878 Python recognizes 'multiqc.templates.disco' as an importable package[^1], 2026-05-13T19:10:56,878 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,879 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,880 package, please make sure that 'multiqc.templates.disco' is explicitly added 2026-05-13T19:10:56,880 to the `packages` configuration field. 2026-05-13T19:10:56,881 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,881 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,882 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,882 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,883 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,884 If you don't want 'multiqc.templates.disco' to be distributed and are 2026-05-13T19:10:56,884 already explicitly excluding 'multiqc.templates.disco' via 2026-05-13T19:10:56,885 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,885 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,886 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,887 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,888 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,889 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,889 even if it does not contain any `.py` files. 2026-05-13T19:10:56,890 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,890 directory, all directories are treated like packages. 2026-05-13T19:10:56,891 ******************************************************************************** 2026-05-13T19:10:56,892 !! 2026-05-13T19:10:56,892 check.warn(importable) 2026-05-13T19:10:56,893 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.disco.compiled.css' is absent from the `packages` configuration. 2026-05-13T19:10:56,893 !! 2026-05-13T19:10:56,894 ******************************************************************************** 2026-05-13T19:10:56,895 ############################ 2026-05-13T19:10:56,895 # Package would be ignored # 2026-05-13T19:10:56,895 ############################ 2026-05-13T19:10:56,896 Python recognizes 'multiqc.templates.disco.compiled.css' as an importable package[^1], 2026-05-13T19:10:56,896 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,897 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,898 package, please make sure that 'multiqc.templates.disco.compiled.css' is explicitly added 2026-05-13T19:10:56,898 to the `packages` configuration field. 2026-05-13T19:10:56,899 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,900 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,900 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,901 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,901 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,902 If you don't want 'multiqc.templates.disco.compiled.css' to be distributed and are 2026-05-13T19:10:56,903 already explicitly excluding 'multiqc.templates.disco.compiled.css' via 2026-05-13T19:10:56,903 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,904 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,904 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,905 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,907 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,908 even if it does not contain any `.py` files. 2026-05-13T19:10:56,908 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,909 directory, all directories are treated like packages. 2026-05-13T19:10:56,909 ******************************************************************************** 2026-05-13T19:10:56,910 !! 2026-05-13T19:10:56,911 check.warn(importable) 2026-05-13T19:10:56,911 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.disco.compiled.js' is absent from the `packages` configuration. 2026-05-13T19:10:56,912 !! 2026-05-13T19:10:56,912 ******************************************************************************** 2026-05-13T19:10:56,913 ############################ 2026-05-13T19:10:56,913 # Package would be ignored # 2026-05-13T19:10:56,914 ############################ 2026-05-13T19:10:56,914 Python recognizes 'multiqc.templates.disco.compiled.js' as an importable package[^1], 2026-05-13T19:10:56,915 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,916 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,916 package, please make sure that 'multiqc.templates.disco.compiled.js' is explicitly added 2026-05-13T19:10:56,917 to the `packages` configuration field. 2026-05-13T19:10:56,918 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,918 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,919 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,920 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,921 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,922 If you don't want 'multiqc.templates.disco.compiled.js' to be distributed and are 2026-05-13T19:10:56,922 already explicitly excluding 'multiqc.templates.disco.compiled.js' via 2026-05-13T19:10:56,923 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,923 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,924 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,925 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,926 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,927 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,927 even if it does not contain any `.py` files. 2026-05-13T19:10:56,928 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,928 directory, all directories are treated like packages. 2026-05-13T19:10:56,928 ******************************************************************************** 2026-05-13T19:10:56,929 !! 2026-05-13T19:10:56,930 check.warn(importable) 2026-05-13T19:10:56,930 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.disco.src.js' is absent from the `packages` configuration. 2026-05-13T19:10:56,930 !! 2026-05-13T19:10:56,932 ******************************************************************************** 2026-05-13T19:10:56,932 ############################ 2026-05-13T19:10:56,933 # Package would be ignored # 2026-05-13T19:10:56,933 ############################ 2026-05-13T19:10:56,934 Python recognizes 'multiqc.templates.disco.src.js' as an importable package[^1], 2026-05-13T19:10:56,934 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,935 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,935 package, please make sure that 'multiqc.templates.disco.src.js' is explicitly added 2026-05-13T19:10:56,936 to the `packages` configuration field. 2026-05-13T19:10:56,937 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,937 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,938 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,939 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,939 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,940 If you don't want 'multiqc.templates.disco.src.js' to be distributed and are 2026-05-13T19:10:56,941 already explicitly excluding 'multiqc.templates.disco.src.js' via 2026-05-13T19:10:56,941 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,942 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,942 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,943 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,944 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,945 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,946 even if it does not contain any `.py` files. 2026-05-13T19:10:56,946 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,947 directory, all directories are treated like packages. 2026-05-13T19:10:56,947 ******************************************************************************** 2026-05-13T19:10:56,949 !! 2026-05-13T19:10:56,949 check.warn(importable) 2026-05-13T19:10:56,950 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.disco.src.scss' is absent from the `packages` configuration. 2026-05-13T19:10:56,951 !! 2026-05-13T19:10:56,952 ******************************************************************************** 2026-05-13T19:10:56,952 ############################ 2026-05-13T19:10:56,953 # Package would be ignored # 2026-05-13T19:10:56,953 ############################ 2026-05-13T19:10:56,954 Python recognizes 'multiqc.templates.disco.src.scss' as an importable package[^1], 2026-05-13T19:10:56,954 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,956 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,956 package, please make sure that 'multiqc.templates.disco.src.scss' is explicitly added 2026-05-13T19:10:56,957 to the `packages` configuration field. 2026-05-13T19:10:56,958 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,958 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,959 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,960 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,962 If you don't want 'multiqc.templates.disco.src.scss' to be distributed and are 2026-05-13T19:10:56,963 already explicitly excluding 'multiqc.templates.disco.src.scss' via 2026-05-13T19:10:56,963 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,964 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,965 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,968 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,968 even if it does not contain any `.py` files. 2026-05-13T19:10:56,969 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,970 directory, all directories are treated like packages. 2026-05-13T19:10:56,970 ******************************************************************************** 2026-05-13T19:10:56,971 !! 2026-05-13T19:10:56,972 check.warn(importable) 2026-05-13T19:10:56,972 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.gathered' is absent from the `packages` configuration. 2026-05-13T19:10:56,973 !! 2026-05-13T19:10:56,974 ******************************************************************************** 2026-05-13T19:10:56,975 ############################ 2026-05-13T19:10:56,975 # Package would be ignored # 2026-05-13T19:10:56,976 ############################ 2026-05-13T19:10:56,976 Python recognizes 'multiqc.templates.gathered' as an importable package[^1], 2026-05-13T19:10:56,977 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:56,978 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:56,979 package, please make sure that 'multiqc.templates.gathered' is explicitly added 2026-05-13T19:10:56,979 to the `packages` configuration field. 2026-05-13T19:10:56,980 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:56,981 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:56,982 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:56,983 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:56,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:56,986 If you don't want 'multiqc.templates.gathered' to be distributed and are 2026-05-13T19:10:56,986 already explicitly excluding 'multiqc.templates.gathered' via 2026-05-13T19:10:56,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:56,987 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:56,987 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:56,989 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:56,990 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:56,991 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:56,992 even if it does not contain any `.py` files. 2026-05-13T19:10:56,992 On the other hand, currently there is no concept of package data 2026-05-13T19:10:56,993 directory, all directories are treated like packages. 2026-05-13T19:10:56,993 ******************************************************************************** 2026-05-13T19:10:56,995 !! 2026-05-13T19:10:56,995 check.warn(importable) 2026-05-13T19:10:56,996 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo' is absent from the `packages` configuration. 2026-05-13T19:10:56,997 !! 2026-05-13T19:10:56,998 ******************************************************************************** 2026-05-13T19:10:56,998 ############################ 2026-05-13T19:10:56,999 # Package would be ignored # 2026-05-13T19:10:57,000 ############################ 2026-05-13T19:10:57,000 Python recognizes 'multiqc.templates.geo' as an importable package[^1], 2026-05-13T19:10:57,001 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,002 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,002 package, please make sure that 'multiqc.templates.geo' is explicitly added 2026-05-13T19:10:57,003 to the `packages` configuration field. 2026-05-13T19:10:57,004 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,004 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,005 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,006 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,007 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,008 If you don't want 'multiqc.templates.geo' to be distributed and are 2026-05-13T19:10:57,009 already explicitly excluding 'multiqc.templates.geo' via 2026-05-13T19:10:57,009 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,010 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,010 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,011 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,013 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,014 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,015 even if it does not contain any `.py` files. 2026-05-13T19:10:57,015 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,016 directory, all directories are treated like packages. 2026-05-13T19:10:57,016 ******************************************************************************** 2026-05-13T19:10:57,018 !! 2026-05-13T19:10:57,018 check.warn(importable) 2026-05-13T19:10:57,019 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo.assets.css' is absent from the `packages` configuration. 2026-05-13T19:10:57,019 !! 2026-05-13T19:10:57,020 ******************************************************************************** 2026-05-13T19:10:57,020 ############################ 2026-05-13T19:10:57,021 # Package would be ignored # 2026-05-13T19:10:57,021 ############################ 2026-05-13T19:10:57,022 Python recognizes 'multiqc.templates.geo.assets.css' as an importable package[^1], 2026-05-13T19:10:57,022 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,023 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,024 package, please make sure that 'multiqc.templates.geo.assets.css' is explicitly added 2026-05-13T19:10:57,024 to the `packages` configuration field. 2026-05-13T19:10:57,025 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,026 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,026 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,027 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,028 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,030 If you don't want 'multiqc.templates.geo.assets.css' to be distributed and are 2026-05-13T19:10:57,030 already explicitly excluding 'multiqc.templates.geo.assets.css' via 2026-05-13T19:10:57,031 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,031 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,032 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,033 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,034 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,036 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,037 even if it does not contain any `.py` files. 2026-05-13T19:10:57,037 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,038 directory, all directories are treated like packages. 2026-05-13T19:10:57,038 ******************************************************************************** 2026-05-13T19:10:57,039 !! 2026-05-13T19:10:57,040 check.warn(importable) 2026-05-13T19:10:57,041 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo.assets.img' is absent from the `packages` configuration. 2026-05-13T19:10:57,041 !! 2026-05-13T19:10:57,042 ******************************************************************************** 2026-05-13T19:10:57,043 ############################ 2026-05-13T19:10:57,044 # Package would be ignored # 2026-05-13T19:10:57,045 ############################ 2026-05-13T19:10:57,045 Python recognizes 'multiqc.templates.geo.assets.img' as an importable package[^1], 2026-05-13T19:10:57,046 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,047 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,048 package, please make sure that 'multiqc.templates.geo.assets.img' is explicitly added 2026-05-13T19:10:57,048 to the `packages` configuration field. 2026-05-13T19:10:57,050 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,051 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,051 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,052 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,053 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,054 If you don't want 'multiqc.templates.geo.assets.img' to be distributed and are 2026-05-13T19:10:57,054 already explicitly excluding 'multiqc.templates.geo.assets.img' via 2026-05-13T19:10:57,055 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,055 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,056 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,057 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,058 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,059 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,060 even if it does not contain any `.py` files. 2026-05-13T19:10:57,060 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,061 directory, all directories are treated like packages. 2026-05-13T19:10:57,061 ******************************************************************************** 2026-05-13T19:10:57,062 !! 2026-05-13T19:10:57,063 check.warn(importable) 2026-05-13T19:10:57,064 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original' is absent from the `packages` configuration. 2026-05-13T19:10:57,064 !! 2026-05-13T19:10:57,065 ******************************************************************************** 2026-05-13T19:10:57,066 ############################ 2026-05-13T19:10:57,066 # Package would be ignored # 2026-05-13T19:10:57,067 ############################ 2026-05-13T19:10:57,067 Python recognizes 'multiqc.templates.original' as an importable package[^1], 2026-05-13T19:10:57,068 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,069 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,070 package, please make sure that 'multiqc.templates.original' is explicitly added 2026-05-13T19:10:57,070 to the `packages` configuration field. 2026-05-13T19:10:57,071 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,072 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,072 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,074 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,075 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,076 If you don't want 'multiqc.templates.original' to be distributed and are 2026-05-13T19:10:57,077 already explicitly excluding 'multiqc.templates.original' via 2026-05-13T19:10:57,077 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,078 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,078 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,080 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,081 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,082 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,082 even if it does not contain any `.py` files. 2026-05-13T19:10:57,083 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,084 directory, all directories are treated like packages. 2026-05-13T19:10:57,084 ******************************************************************************** 2026-05-13T19:10:57,085 !! 2026-05-13T19:10:57,086 check.warn(importable) 2026-05-13T19:10:57,086 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.css' is absent from the `packages` configuration. 2026-05-13T19:10:57,087 !! 2026-05-13T19:10:57,088 ******************************************************************************** 2026-05-13T19:10:57,088 ############################ 2026-05-13T19:10:57,089 # Package would be ignored # 2026-05-13T19:10:57,089 ############################ 2026-05-13T19:10:57,090 Python recognizes 'multiqc.templates.original.assets.css' as an importable package[^1], 2026-05-13T19:10:57,090 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,092 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,092 package, please make sure that 'multiqc.templates.original.assets.css' is explicitly added 2026-05-13T19:10:57,093 to the `packages` configuration field. 2026-05-13T19:10:57,094 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,094 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,095 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,096 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,097 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,098 If you don't want 'multiqc.templates.original.assets.css' to be distributed and are 2026-05-13T19:10:57,099 already explicitly excluding 'multiqc.templates.original.assets.css' via 2026-05-13T19:10:57,099 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,100 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,100 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,101 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,102 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,104 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,104 even if it does not contain any `.py` files. 2026-05-13T19:10:57,105 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,105 directory, all directories are treated like packages. 2026-05-13T19:10:57,106 ******************************************************************************** 2026-05-13T19:10:57,107 !! 2026-05-13T19:10:57,108 check.warn(importable) 2026-05-13T19:10:57,108 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.fonts' is absent from the `packages` configuration. 2026-05-13T19:10:57,109 !! 2026-05-13T19:10:57,110 ******************************************************************************** 2026-05-13T19:10:57,110 ############################ 2026-05-13T19:10:57,111 # Package would be ignored # 2026-05-13T19:10:57,112 ############################ 2026-05-13T19:10:57,112 Python recognizes 'multiqc.templates.original.assets.fonts' as an importable package[^1], 2026-05-13T19:10:57,112 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,113 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,114 package, please make sure that 'multiqc.templates.original.assets.fonts' is explicitly added 2026-05-13T19:10:57,114 to the `packages` configuration field. 2026-05-13T19:10:57,115 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,116 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,116 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,117 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,118 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,119 If you don't want 'multiqc.templates.original.assets.fonts' to be distributed and are 2026-05-13T19:10:57,119 already explicitly excluding 'multiqc.templates.original.assets.fonts' via 2026-05-13T19:10:57,120 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,120 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,121 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,122 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,123 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,125 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,125 even if it does not contain any `.py` files. 2026-05-13T19:10:57,126 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,126 directory, all directories are treated like packages. 2026-05-13T19:10:57,127 ******************************************************************************** 2026-05-13T19:10:57,128 !! 2026-05-13T19:10:57,128 check.warn(importable) 2026-05-13T19:10:57,129 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.img' is absent from the `packages` configuration. 2026-05-13T19:10:57,129 !! 2026-05-13T19:10:57,130 ******************************************************************************** 2026-05-13T19:10:57,131 ############################ 2026-05-13T19:10:57,131 # Package would be ignored # 2026-05-13T19:10:57,132 ############################ 2026-05-13T19:10:57,132 Python recognizes 'multiqc.templates.original.assets.img' as an importable package[^1], 2026-05-13T19:10:57,133 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,134 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,134 package, please make sure that 'multiqc.templates.original.assets.img' is explicitly added 2026-05-13T19:10:57,135 to the `packages` configuration field. 2026-05-13T19:10:57,136 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,136 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,137 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,138 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,139 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,140 If you don't want 'multiqc.templates.original.assets.img' to be distributed and are 2026-05-13T19:10:57,140 already explicitly excluding 'multiqc.templates.original.assets.img' via 2026-05-13T19:10:57,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,142 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,142 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,143 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,145 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,145 even if it does not contain any `.py` files. 2026-05-13T19:10:57,146 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,146 directory, all directories are treated like packages. 2026-05-13T19:10:57,147 ******************************************************************************** 2026-05-13T19:10:57,148 !! 2026-05-13T19:10:57,148 check.warn(importable) 2026-05-13T19:10:57,148 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.js' is absent from the `packages` configuration. 2026-05-13T19:10:57,149 !! 2026-05-13T19:10:57,150 ******************************************************************************** 2026-05-13T19:10:57,150 ############################ 2026-05-13T19:10:57,151 # Package would be ignored # 2026-05-13T19:10:57,151 ############################ 2026-05-13T19:10:57,152 Python recognizes 'multiqc.templates.original.assets.js' as an importable package[^1], 2026-05-13T19:10:57,152 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,153 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,154 package, please make sure that 'multiqc.templates.original.assets.js' is explicitly added 2026-05-13T19:10:57,154 to the `packages` configuration field. 2026-05-13T19:10:57,156 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,156 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,157 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,157 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,159 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,160 If you don't want 'multiqc.templates.original.assets.js' to be distributed and are 2026-05-13T19:10:57,160 already explicitly excluding 'multiqc.templates.original.assets.js' via 2026-05-13T19:10:57,161 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,161 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,162 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,163 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,164 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,166 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,166 even if it does not contain any `.py` files. 2026-05-13T19:10:57,167 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,167 directory, all directories are treated like packages. 2026-05-13T19:10:57,168 ******************************************************************************** 2026-05-13T19:10:57,169 !! 2026-05-13T19:10:57,170 check.warn(importable) 2026-05-13T19:10:57,170 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.js.packages' is absent from the `packages` configuration. 2026-05-13T19:10:57,171 !! 2026-05-13T19:10:57,171 ******************************************************************************** 2026-05-13T19:10:57,172 ############################ 2026-05-13T19:10:57,172 # Package would be ignored # 2026-05-13T19:10:57,173 ############################ 2026-05-13T19:10:57,173 Python recognizes 'multiqc.templates.original.assets.js.packages' as an importable package[^1], 2026-05-13T19:10:57,174 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,175 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,175 package, please make sure that 'multiqc.templates.original.assets.js.packages' is explicitly added 2026-05-13T19:10:57,176 to the `packages` configuration field. 2026-05-13T19:10:57,177 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,177 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,178 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,179 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,180 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,181 If you don't want 'multiqc.templates.original.assets.js.packages' to be distributed and are 2026-05-13T19:10:57,181 already explicitly excluding 'multiqc.templates.original.assets.js.packages' via 2026-05-13T19:10:57,182 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,182 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,183 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,184 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,185 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,187 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,187 even if it does not contain any `.py` files. 2026-05-13T19:10:57,188 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,188 directory, all directories are treated like packages. 2026-05-13T19:10:57,189 ******************************************************************************** 2026-05-13T19:10:57,190 !! 2026-05-13T19:10:57,190 check.warn(importable) 2026-05-13T19:10:57,191 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.js.plots' is absent from the `packages` configuration. 2026-05-13T19:10:57,191 !! 2026-05-13T19:10:57,192 ******************************************************************************** 2026-05-13T19:10:57,192 ############################ 2026-05-13T19:10:57,193 # Package would be ignored # 2026-05-13T19:10:57,193 ############################ 2026-05-13T19:10:57,194 Python recognizes 'multiqc.templates.original.assets.js.plots' as an importable package[^1], 2026-05-13T19:10:57,195 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,196 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,196 package, please make sure that 'multiqc.templates.original.assets.js.plots' is explicitly added 2026-05-13T19:10:57,197 to the `packages` configuration field. 2026-05-13T19:10:57,198 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,198 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,199 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,199 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,200 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,201 If you don't want 'multiqc.templates.original.assets.js.plots' to be distributed and are 2026-05-13T19:10:57,202 already explicitly excluding 'multiqc.templates.original.assets.js.plots' via 2026-05-13T19:10:57,202 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,203 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,203 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,204 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,205 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,207 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,208 even if it does not contain any `.py` files. 2026-05-13T19:10:57,208 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,209 directory, all directories are treated like packages. 2026-05-13T19:10:57,209 ******************************************************************************** 2026-05-13T19:10:57,210 !! 2026-05-13T19:10:57,211 check.warn(importable) 2026-05-13T19:10:57,211 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.sections' is absent from the `packages` configuration. 2026-05-13T19:10:57,212 !! 2026-05-13T19:10:57,213 ******************************************************************************** 2026-05-13T19:10:57,214 ############################ 2026-05-13T19:10:57,214 # Package would be ignored # 2026-05-13T19:10:57,215 ############################ 2026-05-13T19:10:57,215 Python recognizes 'multiqc.templates.sections' as an importable package[^1], 2026-05-13T19:10:57,216 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,217 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,217 package, please make sure that 'multiqc.templates.sections' is explicitly added 2026-05-13T19:10:57,218 to the `packages` configuration field. 2026-05-13T19:10:57,219 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,220 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,221 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,222 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,223 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,224 If you don't want 'multiqc.templates.sections' to be distributed and are 2026-05-13T19:10:57,224 already explicitly excluding 'multiqc.templates.sections' via 2026-05-13T19:10:57,225 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,225 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,226 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,227 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,228 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,230 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,230 even if it does not contain any `.py` files. 2026-05-13T19:10:57,230 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,231 directory, all directories are treated like packages. 2026-05-13T19:10:57,231 ******************************************************************************** 2026-05-13T19:10:57,232 !! 2026-05-13T19:10:57,233 check.warn(importable) 2026-05-13T19:10:57,233 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.simple' is absent from the `packages` configuration. 2026-05-13T19:10:57,234 !! 2026-05-13T19:10:57,235 ******************************************************************************** 2026-05-13T19:10:57,235 ############################ 2026-05-13T19:10:57,236 # Package would be ignored # 2026-05-13T19:10:57,236 ############################ 2026-05-13T19:10:57,237 Python recognizes 'multiqc.templates.simple' as an importable package[^1], 2026-05-13T19:10:57,237 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,238 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,239 package, please make sure that 'multiqc.templates.simple' is explicitly added 2026-05-13T19:10:57,240 to the `packages` configuration field. 2026-05-13T19:10:57,241 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,242 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,242 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,243 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,244 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,245 If you don't want 'multiqc.templates.simple' to be distributed and are 2026-05-13T19:10:57,246 already explicitly excluding 'multiqc.templates.simple' via 2026-05-13T19:10:57,246 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,247 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,247 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,248 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,249 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,251 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,251 even if it does not contain any `.py` files. 2026-05-13T19:10:57,252 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,252 directory, all directories are treated like packages. 2026-05-13T19:10:57,253 ******************************************************************************** 2026-05-13T19:10:57,254 !! 2026-05-13T19:10:57,254 check.warn(importable) 2026-05-13T19:10:57,255 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.utils' is absent from the `packages` configuration. 2026-05-13T19:10:57,255 !! 2026-05-13T19:10:57,256 ******************************************************************************** 2026-05-13T19:10:57,257 ############################ 2026-05-13T19:10:57,257 # Package would be ignored # 2026-05-13T19:10:57,258 ############################ 2026-05-13T19:10:57,258 Python recognizes 'multiqc.utils' as an importable package[^1], 2026-05-13T19:10:57,259 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,259 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,260 package, please make sure that 'multiqc.utils' is explicitly added 2026-05-13T19:10:57,260 to the `packages` configuration field. 2026-05-13T19:10:57,261 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,262 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,262 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,263 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,264 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,265 If you don't want 'multiqc.utils' to be distributed and are 2026-05-13T19:10:57,265 already explicitly excluding 'multiqc.utils' via 2026-05-13T19:10:57,266 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,266 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,267 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,268 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,269 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,270 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,271 even if it does not contain any `.py` files. 2026-05-13T19:10:57,271 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,272 directory, all directories are treated like packages. 2026-05-13T19:10:57,272 ******************************************************************************** 2026-05-13T19:10:57,273 !! 2026-05-13T19:10:57,274 check.warn(importable) 2026-05-13T19:10:57,274 /tmp/pip-build-env-j1ef1l5m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.utils.material_icons' is absent from the `packages` configuration. 2026-05-13T19:10:57,275 !! 2026-05-13T19:10:57,276 ******************************************************************************** 2026-05-13T19:10:57,276 ############################ 2026-05-13T19:10:57,277 # Package would be ignored # 2026-05-13T19:10:57,277 ############################ 2026-05-13T19:10:57,278 Python recognizes 'multiqc.utils.material_icons' as an importable package[^1], 2026-05-13T19:10:57,278 but it is absent from setuptools' `packages` configuration. 2026-05-13T19:10:57,279 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-13T19:10:57,280 package, please make sure that 'multiqc.utils.material_icons' is explicitly added 2026-05-13T19:10:57,280 to the `packages` configuration field. 2026-05-13T19:10:57,281 Alternatively, you can also rely on setuptools' discovery methods 2026-05-13T19:10:57,282 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-13T19:10:57,282 instead of `find_packages(...)`/`find:`). 2026-05-13T19:10:57,284 You can read more about "package discovery" on setuptools documentation page: 2026-05-13T19:10:57,285 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-13T19:10:57,286 If you don't want 'multiqc.utils.material_icons' to be distributed and are 2026-05-13T19:10:57,286 already explicitly excluding 'multiqc.utils.material_icons' via 2026-05-13T19:10:57,286 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-13T19:10:57,287 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-13T19:10:57,287 combination with a more fine grained `package-data` configuration. 2026-05-13T19:10:57,288 You can read more about "package data files" on setuptools documentation page: 2026-05-13T19:10:57,289 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-13T19:10:57,291 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-13T19:10:57,291 even if it does not contain any `.py` files. 2026-05-13T19:10:57,291 On the other hand, currently there is no concept of package data 2026-05-13T19:10:57,292 directory, all directories are treated like packages. 2026-05-13T19:10:57,292 ******************************************************************************** 2026-05-13T19:10:57,293 !! 2026-05-13T19:10:57,294 check.warn(importable) 2026-05-13T19:10:57,294 copying multiqc/config_defaults.yaml -> build/lib/multiqc 2026-05-13T19:10:57,295 copying multiqc/py.typed -> build/lib/multiqc 2026-05-13T19:10:57,295 copying multiqc/search_patterns.yaml -> build/lib/multiqc 2026-05-13T19:10:57,295 creating build/lib/multiqc/core 2026-05-13T19:10:57,296 copying multiqc/core/__init__.py -> build/lib/multiqc/core 2026-05-13T19:10:57,296 copying multiqc/core/ai.py -> build/lib/multiqc/core 2026-05-13T19:10:57,297 copying multiqc/core/config_check.py -> build/lib/multiqc/core 2026-05-13T19:10:57,297 copying multiqc/core/exceptions.py -> build/lib/multiqc/core 2026-05-13T19:10:57,298 copying multiqc/core/exec_modules.py -> build/lib/multiqc/core 2026-05-13T19:10:57,298 copying multiqc/core/file_search.py -> build/lib/multiqc/core 2026-05-13T19:10:57,299 copying multiqc/core/log_and_rich.py -> build/lib/multiqc/core 2026-05-13T19:10:57,299 copying multiqc/core/order_modules_and_sections.py -> build/lib/multiqc/core 2026-05-13T19:10:57,300 copying multiqc/core/plot_data_store.py -> build/lib/multiqc/core 2026-05-13T19:10:57,300 copying multiqc/core/plugin_hooks.py -> build/lib/multiqc/core 2026-05-13T19:10:57,300 copying multiqc/core/software_versions.py -> build/lib/multiqc/core 2026-05-13T19:10:57,301 copying multiqc/core/strict_helpers.py -> build/lib/multiqc/core 2026-05-13T19:10:57,301 copying multiqc/core/tmp_dir.py -> build/lib/multiqc/core 2026-05-13T19:10:57,302 copying multiqc/core/update_config.py -> build/lib/multiqc/core 2026-05-13T19:10:57,302 copying multiqc/core/version_check.py -> build/lib/multiqc/core 2026-05-13T19:10:57,303 copying multiqc/core/write_results.py -> build/lib/multiqc/core 2026-05-13T19:10:57,303 creating build/lib/multiqc/core/special_case_modules 2026-05-13T19:10:57,304 copying multiqc/core/special_case_modules/custom_content.py -> build/lib/multiqc/core/special_case_modules 2026-05-13T19:10:57,304 copying multiqc/core/special_case_modules/load_multiqc_data.py -> build/lib/multiqc/core/special_case_modules 2026-05-13T19:10:57,305 copying multiqc/core/special_case_modules/profile_runtime.py -> build/lib/multiqc/core/special_case_modules 2026-05-13T19:10:57,305 copying multiqc/core/special_case_modules/software_versions.py -> build/lib/multiqc/core/special_case_modules 2026-05-13T19:10:57,306 creating build/lib/multiqc/modules 2026-05-13T19:10:57,306 copying multiqc/modules/__init__.py -> build/lib/multiqc/modules 2026-05-13T19:10:57,307 creating build/lib/multiqc/modules/adapterremoval 2026-05-13T19:10:57,307 copying multiqc/modules/adapterremoval/__init__.py -> build/lib/multiqc/modules/adapterremoval 2026-05-13T19:10:57,308 copying multiqc/modules/adapterremoval/adapterremoval.py -> build/lib/multiqc/modules/adapterremoval 2026-05-13T19:10:57,308 creating build/lib/multiqc/modules/afterqc 2026-05-13T19:10:57,309 copying multiqc/modules/afterqc/__init__.py -> build/lib/multiqc/modules/afterqc 2026-05-13T19:10:57,309 copying multiqc/modules/afterqc/afterqc.py -> build/lib/multiqc/modules/afterqc 2026-05-13T19:10:57,310 creating build/lib/multiqc/modules/anglerfish 2026-05-13T19:10:57,310 copying multiqc/modules/anglerfish/__init__.py -> build/lib/multiqc/modules/anglerfish 2026-05-13T19:10:57,311 copying multiqc/modules/anglerfish/anglerfish.py -> build/lib/multiqc/modules/anglerfish 2026-05-13T19:10:57,311 creating build/lib/multiqc/modules/ataqv 2026-05-13T19:10:57,311 copying multiqc/modules/ataqv/__init__.py -> build/lib/multiqc/modules/ataqv 2026-05-13T19:10:57,312 copying multiqc/modules/ataqv/ataqv.py -> build/lib/multiqc/modules/ataqv 2026-05-13T19:10:57,312 creating build/lib/multiqc/modules/bakta 2026-05-13T19:10:57,313 copying multiqc/modules/bakta/__init__.py -> build/lib/multiqc/modules/bakta 2026-05-13T19:10:57,313 copying multiqc/modules/bakta/bakta.py -> build/lib/multiqc/modules/bakta 2026-05-13T19:10:57,313 creating build/lib/multiqc/modules/bamdst 2026-05-13T19:10:57,314 copying multiqc/modules/bamdst/__init__.py -> build/lib/multiqc/modules/bamdst 2026-05-13T19:10:57,314 copying multiqc/modules/bamdst/bamdst.py -> build/lib/multiqc/modules/bamdst 2026-05-13T19:10:57,315 creating build/lib/multiqc/modules/bamtools 2026-05-13T19:10:57,316 copying multiqc/modules/bamtools/__init__.py -> build/lib/multiqc/modules/bamtools 2026-05-13T19:10:57,316 copying multiqc/modules/bamtools/bamtools.py -> build/lib/multiqc/modules/bamtools 2026-05-13T19:10:57,317 copying multiqc/modules/bamtools/stats.py -> build/lib/multiqc/modules/bamtools 2026-05-13T19:10:57,317 creating build/lib/multiqc/modules/bases2fastq 2026-05-13T19:10:57,318 copying multiqc/modules/bases2fastq/__init__.py -> build/lib/multiqc/modules/bases2fastq 2026-05-13T19:10:57,319 copying multiqc/modules/bases2fastq/bases2fastq.py -> build/lib/multiqc/modules/bases2fastq 2026-05-13T19:10:57,319 copying multiqc/modules/bases2fastq/plot_runs.py -> build/lib/multiqc/modules/bases2fastq 2026-05-13T19:10:57,319 copying multiqc/modules/bases2fastq/plot_samples.py -> build/lib/multiqc/modules/bases2fastq 2026-05-13T19:10:57,320 creating build/lib/multiqc/modules/bases2fastq/tests 2026-05-13T19:10:57,320 copying multiqc/modules/bases2fastq/tests/conftest.py -> build/lib/multiqc/modules/bases2fastq/tests 2026-05-13T19:10:57,321 copying multiqc/modules/bases2fastq/tests/test_bases2fastq.py -> build/lib/multiqc/modules/bases2fastq/tests 2026-05-13T19:10:57,321 creating build/lib/multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:10:57,322 copying multiqc/modules/bases2fastq/tests/fixtures/project_runstats.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:10:57,322 copying multiqc/modules/bases2fastq/tests/fixtures/run_manifest.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:10:57,323 copying multiqc/modules/bases2fastq/tests/fixtures/run_manifest_with_samples.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:10:57,323 copying multiqc/modules/bases2fastq/tests/fixtures/run_runstats.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:10:57,324 copying multiqc/modules/bases2fastq/tests/fixtures/run_runstats_low_polonies.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:10:57,324 copying multiqc/modules/bases2fastq/tests/fixtures/run_runstats_with_occurrences.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:10:57,325 copying multiqc/modules/bases2fastq/tests/fixtures/run_runstats_with_unassigned.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:10:57,325 creating build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject 2026-05-13T19:10:57,326 copying multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/RunManifest.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject 2026-05-13T19:10:57,326 copying multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/RunStats.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject 2026-05-13T19:10:57,327 creating build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/Samples/DefaultProject 2026-05-13T19:10:57,327 copying multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/Samples/DefaultProject/DefaultProject_RunStats.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/Samples/DefaultProject 2026-05-13T19:10:57,327 creating build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProject 2026-05-13T19:10:57,328 copying multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProject/RunStats.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProject 2026-05-13T19:10:57,328 creating build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectLowPolonies 2026-05-13T19:10:57,329 copying multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectLowPolonies/RunStats.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectLowPolonies 2026-05-13T19:10:57,329 creating build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectWithLanes 2026-05-13T19:10:57,329 copying multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectWithLanes/RunStats.json -> build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectWithLanes 2026-05-13T19:10:57,330 creating build/lib/multiqc/modules/bbduk 2026-05-13T19:10:57,330 copying multiqc/modules/bbduk/__init__.py -> build/lib/multiqc/modules/bbduk 2026-05-13T19:10:57,331 copying multiqc/modules/bbduk/bbduk.py -> build/lib/multiqc/modules/bbduk 2026-05-13T19:10:57,331 creating build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,332 copying multiqc/modules/bbmap/__init__.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,332 copying multiqc/modules/bbmap/bbmap.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,332 copying multiqc/modules/bbmap/bbmap_filetypes.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,333 copying multiqc/modules/bbmap/plot_aqhist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,333 copying multiqc/modules/bbmap/plot_basic_hist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,334 copying multiqc/modules/bbmap/plot_bbsplit.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,334 copying multiqc/modules/bbmap/plot_bhist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,335 copying multiqc/modules/bbmap/plot_bqhist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,335 copying multiqc/modules/bbmap/plot_covhist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,336 copying multiqc/modules/bbmap/plot_idhist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,336 copying multiqc/modules/bbmap/plot_ihist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,337 copying multiqc/modules/bbmap/plot_indelhist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,337 copying multiqc/modules/bbmap/plot_mhist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,338 copying multiqc/modules/bbmap/plot_qahist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,338 copying multiqc/modules/bbmap/plot_qchist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,339 copying multiqc/modules/bbmap/plot_qhist.py -> build/lib/multiqc/modules/bbmap 2026-05-13T19:10:57,339 creating build/lib/multiqc/modules/bcftools 2026-05-13T19:10:57,340 copying multiqc/modules/bcftools/__init__.py -> build/lib/multiqc/modules/bcftools 2026-05-13T19:10:57,340 copying multiqc/modules/bcftools/bcftools.py -> build/lib/multiqc/modules/bcftools 2026-05-13T19:10:57,341 copying multiqc/modules/bcftools/stats.py -> build/lib/multiqc/modules/bcftools 2026-05-13T19:10:57,341 creating build/lib/multiqc/modules/bcl2fastq 2026-05-13T19:10:57,342 copying multiqc/modules/bcl2fastq/__init__.py -> build/lib/multiqc/modules/bcl2fastq 2026-05-13T19:10:57,342 copying multiqc/modules/bcl2fastq/bcl2fastq.py -> build/lib/multiqc/modules/bcl2fastq 2026-05-13T19:10:57,343 creating build/lib/multiqc/modules/bclconvert 2026-05-13T19:10:57,343 copying multiqc/modules/bclconvert/__init__.py -> build/lib/multiqc/modules/bclconvert 2026-05-13T19:10:57,343 copying multiqc/modules/bclconvert/bclconvert.py -> build/lib/multiqc/modules/bclconvert 2026-05-13T19:10:57,344 creating build/lib/multiqc/modules/biobambam2 2026-05-13T19:10:57,344 copying multiqc/modules/biobambam2/__init__.py -> build/lib/multiqc/modules/biobambam2 2026-05-13T19:10:57,345 copying multiqc/modules/biobambam2/biobambam2.py -> build/lib/multiqc/modules/biobambam2 2026-05-13T19:10:57,345 creating build/lib/multiqc/modules/biobloomtools 2026-05-13T19:10:57,345 copying multiqc/modules/biobloomtools/__init__.py -> build/lib/multiqc/modules/biobloomtools 2026-05-13T19:10:57,346 copying multiqc/modules/biobloomtools/biobloomtools.py -> build/lib/multiqc/modules/biobloomtools 2026-05-13T19:10:57,346 creating build/lib/multiqc/modules/biscuit 2026-05-13T19:10:57,347 copying multiqc/modules/biscuit/__init__.py -> build/lib/multiqc/modules/biscuit 2026-05-13T19:10:57,347 copying multiqc/modules/biscuit/biscuit.py -> build/lib/multiqc/modules/biscuit 2026-05-13T19:10:57,347 creating build/lib/multiqc/modules/biscuit/tests 2026-05-13T19:10:57,348 copying multiqc/modules/biscuit/tests/__init__.py -> build/lib/multiqc/modules/biscuit/tests 2026-05-13T19:10:57,349 copying multiqc/modules/biscuit/tests/test_biscuit.py -> build/lib/multiqc/modules/biscuit/tests 2026-05-13T19:10:57,349 creating build/lib/multiqc/modules/bismark 2026-05-13T19:10:57,350 copying multiqc/modules/bismark/__init__.py -> build/lib/multiqc/modules/bismark 2026-05-13T19:10:57,350 copying multiqc/modules/bismark/bismark.py -> build/lib/multiqc/modules/bismark 2026-05-13T19:10:57,351 creating build/lib/multiqc/modules/bowtie1 2026-05-13T19:10:57,351 copying multiqc/modules/bowtie1/__init__.py -> build/lib/multiqc/modules/bowtie1 2026-05-13T19:10:57,352 copying multiqc/modules/bowtie1/bowtie1.py -> build/lib/multiqc/modules/bowtie1 2026-05-13T19:10:57,352 creating build/lib/multiqc/modules/bowtie2 2026-05-13T19:10:57,353 copying multiqc/modules/bowtie2/__init__.py -> build/lib/multiqc/modules/bowtie2 2026-05-13T19:10:57,353 copying multiqc/modules/bowtie2/bowtie2.py -> build/lib/multiqc/modules/bowtie2 2026-05-13T19:10:57,353 creating build/lib/multiqc/modules/busco 2026-05-13T19:10:57,354 copying multiqc/modules/busco/__init__.py -> build/lib/multiqc/modules/busco 2026-05-13T19:10:57,354 copying multiqc/modules/busco/busco.py -> build/lib/multiqc/modules/busco 2026-05-13T19:10:57,355 creating build/lib/multiqc/modules/bustools 2026-05-13T19:10:57,355 copying multiqc/modules/bustools/__init__.py -> build/lib/multiqc/modules/bustools 2026-05-13T19:10:57,356 copying multiqc/modules/bustools/bustools.py -> build/lib/multiqc/modules/bustools 2026-05-13T19:10:57,357 creating build/lib/multiqc/modules/ccs 2026-05-13T19:10:57,357 copying multiqc/modules/ccs/__init__.py -> build/lib/multiqc/modules/ccs 2026-05-13T19:10:57,357 copying multiqc/modules/ccs/ccs.py -> build/lib/multiqc/modules/ccs 2026-05-13T19:10:57,358 creating build/lib/multiqc/modules/ccs/tests 2026-05-13T19:10:57,358 copying multiqc/modules/ccs/tests/__init__.py -> build/lib/multiqc/modules/ccs/tests 2026-05-13T19:10:57,359 copying multiqc/modules/ccs/tests/test_ccs.py -> build/lib/multiqc/modules/ccs/tests 2026-05-13T19:10:57,360 creating build/lib/multiqc/modules/cellranger 2026-05-13T19:10:57,360 copying multiqc/modules/cellranger/__init__.py -> build/lib/multiqc/modules/cellranger 2026-05-13T19:10:57,360 copying multiqc/modules/cellranger/cellranger.py -> build/lib/multiqc/modules/cellranger 2026-05-13T19:10:57,361 copying multiqc/modules/cellranger/count.py -> build/lib/multiqc/modules/cellranger 2026-05-13T19:10:57,362 copying multiqc/modules/cellranger/utils.py -> build/lib/multiqc/modules/cellranger 2026-05-13T19:10:57,362 copying multiqc/modules/cellranger/vdj.py -> build/lib/multiqc/modules/cellranger 2026-05-13T19:10:57,362 creating build/lib/multiqc/modules/cellranger_arc 2026-05-13T19:10:57,363 copying multiqc/modules/cellranger_arc/__init__.py -> build/lib/multiqc/modules/cellranger_arc 2026-05-13T19:10:57,363 copying multiqc/modules/cellranger_arc/cellranger_arc.py -> build/lib/multiqc/modules/cellranger_arc 2026-05-13T19:10:57,364 copying multiqc/modules/cellranger_arc/utils.py -> build/lib/multiqc/modules/cellranger_arc 2026-05-13T19:10:57,364 creating build/lib/multiqc/modules/cellranger_arc/tests 2026-05-13T19:10:57,364 copying multiqc/modules/cellranger_arc/tests/__init__.py -> build/lib/multiqc/modules/cellranger_arc/tests 2026-05-13T19:10:57,365 copying multiqc/modules/cellranger_arc/tests/test_cellranger_arc.py -> build/lib/multiqc/modules/cellranger_arc/tests 2026-05-13T19:10:57,365 creating build/lib/multiqc/modules/cells2stats 2026-05-13T19:10:57,366 copying multiqc/modules/cells2stats/__init__.py -> build/lib/multiqc/modules/cells2stats 2026-05-13T19:10:57,366 copying multiqc/modules/cells2stats/cells2stats.py -> build/lib/multiqc/modules/cells2stats 2026-05-13T19:10:57,367 copying multiqc/modules/cells2stats/cells2stats_bar_plots.py -> build/lib/multiqc/modules/cells2stats 2026-05-13T19:10:57,367 copying multiqc/modules/cells2stats/cells2stats_tables.py -> build/lib/multiqc/modules/cells2stats 2026-05-13T19:10:57,367 copying multiqc/modules/cells2stats/queries.py -> build/lib/multiqc/modules/cells2stats 2026-05-13T19:10:57,368 copying multiqc/modules/cells2stats/utils.py -> build/lib/multiqc/modules/cells2stats 2026-05-13T19:10:57,368 creating build/lib/multiqc/modules/checkatlas 2026-05-13T19:10:57,369 copying multiqc/modules/checkatlas/__init__.py -> build/lib/multiqc/modules/checkatlas 2026-05-13T19:10:57,370 copying multiqc/modules/checkatlas/checkatlas.py -> build/lib/multiqc/modules/checkatlas 2026-05-13T19:10:57,370 creating build/lib/multiqc/modules/checkm 2026-05-13T19:10:57,371 copying multiqc/modules/checkm/__init__.py -> build/lib/multiqc/modules/checkm 2026-05-13T19:10:57,371 copying multiqc/modules/checkm/checkm.py -> build/lib/multiqc/modules/checkm 2026-05-13T19:10:57,372 creating build/lib/multiqc/modules/checkm2 2026-05-13T19:10:57,372 copying multiqc/modules/checkm2/__init__.py -> build/lib/multiqc/modules/checkm2 2026-05-13T19:10:57,373 copying multiqc/modules/checkm2/checkm2.py -> build/lib/multiqc/modules/checkm2 2026-05-13T19:10:57,373 creating build/lib/multiqc/modules/checkqc 2026-05-13T19:10:57,374 copying multiqc/modules/checkqc/__init__.py -> build/lib/multiqc/modules/checkqc 2026-05-13T19:10:57,374 copying multiqc/modules/checkqc/checkqc.py -> build/lib/multiqc/modules/checkqc 2026-05-13T19:10:57,375 creating build/lib/multiqc/modules/clipandmerge 2026-05-13T19:10:57,375 copying multiqc/modules/clipandmerge/__init__.py -> build/lib/multiqc/modules/clipandmerge 2026-05-13T19:10:57,376 copying multiqc/modules/clipandmerge/clipandmerge.py -> build/lib/multiqc/modules/clipandmerge 2026-05-13T19:10:57,378 creating build/lib/multiqc/modules/clusterflow 2026-05-13T19:10:57,379 copying multiqc/modules/clusterflow/__init__.py -> build/lib/multiqc/modules/clusterflow 2026-05-13T19:10:57,381 copying multiqc/modules/clusterflow/clusterflow.py -> build/lib/multiqc/modules/clusterflow 2026-05-13T19:10:57,384 creating build/lib/multiqc/modules/conpair 2026-05-13T19:10:57,385 copying multiqc/modules/conpair/__init__.py -> build/lib/multiqc/modules/conpair 2026-05-13T19:10:57,388 copying multiqc/modules/conpair/conpair.py -> build/lib/multiqc/modules/conpair 2026-05-13T19:10:57,390 creating build/lib/multiqc/modules/cutadapt 2026-05-13T19:10:57,391 copying multiqc/modules/cutadapt/__init__.py -> build/lib/multiqc/modules/cutadapt 2026-05-13T19:10:57,393 copying multiqc/modules/cutadapt/cutadapt.py -> build/lib/multiqc/modules/cutadapt 2026-05-13T19:10:57,396 creating build/lib/multiqc/modules/damageprofiler 2026-05-13T19:10:57,397 copying multiqc/modules/damageprofiler/__init__.py -> build/lib/multiqc/modules/damageprofiler 2026-05-13T19:10:57,399 copying multiqc/modules/damageprofiler/damageprofiler.py -> build/lib/multiqc/modules/damageprofiler 2026-05-13T19:10:57,402 creating build/lib/multiqc/modules/deacon 2026-05-13T19:10:57,403 copying multiqc/modules/deacon/__init__.py -> build/lib/multiqc/modules/deacon 2026-05-13T19:10:57,405 copying multiqc/modules/deacon/deacon.py -> build/lib/multiqc/modules/deacon 2026-05-13T19:10:57,407 creating build/lib/multiqc/modules/dedup 2026-05-13T19:10:57,408 copying multiqc/modules/dedup/__init__.py -> build/lib/multiqc/modules/dedup 2026-05-13T19:10:57,411 copying multiqc/modules/dedup/dedup.py -> build/lib/multiqc/modules/dedup 2026-05-13T19:10:57,413 creating build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,414 copying multiqc/modules/deeptools/__init__.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,417 copying multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,419 copying multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,422 copying multiqc/modules/deeptools/deeptools.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,424 copying multiqc/modules/deeptools/estimateReadFiltering.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,427 copying multiqc/modules/deeptools/plotCorrelation.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,429 copying multiqc/modules/deeptools/plotCoverage.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,431 copying multiqc/modules/deeptools/plotEnrichment.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,434 copying multiqc/modules/deeptools/plotFingerprint.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,436 copying multiqc/modules/deeptools/plotPCA.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,438 copying multiqc/modules/deeptools/plotProfile.py -> build/lib/multiqc/modules/deeptools 2026-05-13T19:10:57,441 creating build/lib/multiqc/modules/diamond 2026-05-13T19:10:57,442 copying multiqc/modules/diamond/__init__.py -> build/lib/multiqc/modules/diamond 2026-05-13T19:10:57,444 copying multiqc/modules/diamond/diamond.py -> build/lib/multiqc/modules/diamond 2026-05-13T19:10:57,447 creating build/lib/multiqc/modules/disambiguate 2026-05-13T19:10:57,448 copying multiqc/modules/disambiguate/__init__.py -> build/lib/multiqc/modules/disambiguate 2026-05-13T19:10:57,450 copying multiqc/modules/disambiguate/disambiguate.py -> build/lib/multiqc/modules/disambiguate 2026-05-13T19:10:57,452 creating build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,453 copying multiqc/modules/dragen/__init__.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,455 copying multiqc/modules/dragen/coverage_hist.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,457 copying multiqc/modules/dragen/coverage_metrics.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,461 copying multiqc/modules/dragen/coverage_per_contig.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,464 copying multiqc/modules/dragen/dragen.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,466 copying multiqc/modules/dragen/dragen_gc_metrics.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,469 copying multiqc/modules/dragen/fragment_length.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,471 copying multiqc/modules/dragen/mapping_metrics.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,476 copying multiqc/modules/dragen/overall_mean_cov.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,480 copying multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,483 copying multiqc/modules/dragen/rna_quant_metrics.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,486 copying multiqc/modules/dragen/rna_transcript_cov.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,488 copying multiqc/modules/dragen/sc_atac_metrics.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,490 copying multiqc/modules/dragen/sc_rna_metrics.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,492 copying multiqc/modules/dragen/time_metrics.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,495 copying multiqc/modules/dragen/trimmer_metrics.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,497 copying multiqc/modules/dragen/utils.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,500 copying multiqc/modules/dragen/vc_metrics.py -> build/lib/multiqc/modules/dragen 2026-05-13T19:10:57,502 creating build/lib/multiqc/modules/dragen/tests 2026-05-13T19:10:57,503 copying multiqc/modules/dragen/tests/__init__.py -> build/lib/multiqc/modules/dragen/tests 2026-05-13T19:10:57,505 copying multiqc/modules/dragen/tests/test_dragen.py -> build/lib/multiqc/modules/dragen/tests 2026-05-13T19:10:57,507 creating build/lib/multiqc/modules/dragen_fastqc 2026-05-13T19:10:57,508 copying multiqc/modules/dragen_fastqc/__init__.py -> build/lib/multiqc/modules/dragen_fastqc 2026-05-13T19:10:57,510 copying multiqc/modules/dragen_fastqc/base_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2026-05-13T19:10:57,513 copying multiqc/modules/dragen_fastqc/content_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2026-05-13T19:10:57,516 copying multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/lib/multiqc/modules/dragen_fastqc 2026-05-13T19:10:57,518 copying multiqc/modules/dragen_fastqc/gc_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2026-05-13T19:10:57,521 copying multiqc/modules/dragen_fastqc/read_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2026-05-13T19:10:57,524 copying multiqc/modules/dragen_fastqc/util.py -> build/lib/multiqc/modules/dragen_fastqc 2026-05-13T19:10:57,526 creating build/lib/multiqc/modules/dragen_fastqc/assets/js 2026-05-13T19:10:57,528 copying multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/lib/multiqc/modules/dragen_fastqc/assets/js 2026-05-13T19:10:57,531 creating build/lib/multiqc/modules/eigenstratdatabasetools 2026-05-13T19:10:57,532 copying multiqc/modules/eigenstratdatabasetools/__init__.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2026-05-13T19:10:57,534 copying multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2026-05-13T19:10:57,536 creating build/lib/multiqc/modules/fastp 2026-05-13T19:10:57,537 copying multiqc/modules/fastp/__init__.py -> build/lib/multiqc/modules/fastp 2026-05-13T19:10:57,539 copying multiqc/modules/fastp/fastp.py -> build/lib/multiqc/modules/fastp 2026-05-13T19:10:57,542 creating build/lib/multiqc/modules/fastq_screen 2026-05-13T19:10:57,543 copying multiqc/modules/fastq_screen/__init__.py -> build/lib/multiqc/modules/fastq_screen 2026-05-13T19:10:57,545 copying multiqc/modules/fastq_screen/fastq_screen.py -> build/lib/multiqc/modules/fastq_screen 2026-05-13T19:10:57,548 creating build/lib/multiqc/modules/fastqc 2026-05-13T19:10:57,549 copying multiqc/modules/fastqc/__init__.py -> build/lib/multiqc/modules/fastqc 2026-05-13T19:10:57,551 copying multiqc/modules/fastqc/fastqc.py -> build/lib/multiqc/modules/fastqc 2026-05-13T19:10:57,559 creating build/lib/multiqc/modules/fastqc/assets/css 2026-05-13T19:10:57,563 copying multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/lib/multiqc/modules/fastqc/assets/css 2026-05-13T19:10:57,565 creating build/lib/multiqc/modules/fastqc/assets/js 2026-05-13T19:10:57,566 copying multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/lib/multiqc/modules/fastqc/assets/js 2026-05-13T19:10:57,569 creating build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-05-13T19:10:57,570 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-05-13T19:10:57,573 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-05-13T19:10:57,575 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-05-13T19:10:57,577 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-05-13T19:10:57,579 creating build/lib/multiqc/modules/fastqe 2026-05-13T19:10:57,580 copying multiqc/modules/fastqe/__init__.py -> build/lib/multiqc/modules/fastqe 2026-05-13T19:10:57,582 copying multiqc/modules/fastqe/fastqe.py -> build/lib/multiqc/modules/fastqe 2026-05-13T19:10:57,584 creating build/lib/multiqc/modules/featurecounts 2026-05-13T19:10:57,585 copying multiqc/modules/featurecounts/__init__.py -> build/lib/multiqc/modules/featurecounts 2026-05-13T19:10:57,588 copying multiqc/modules/featurecounts/featurecounts.py -> build/lib/multiqc/modules/featurecounts 2026-05-13T19:10:57,590 creating build/lib/multiqc/modules/fgbio 2026-05-13T19:10:57,591 copying multiqc/modules/fgbio/__init__.py -> build/lib/multiqc/modules/fgbio 2026-05-13T19:10:57,593 copying multiqc/modules/fgbio/error_rate_by_read_position.py -> build/lib/multiqc/modules/fgbio 2026-05-13T19:10:57,596 copying multiqc/modules/fgbio/fgbio.py -> build/lib/multiqc/modules/fgbio 2026-05-13T19:10:57,598 copying multiqc/modules/fgbio/group_reads_by_umi.py -> build/lib/multiqc/modules/fgbio 2026-05-13T19:10:57,601 creating build/lib/multiqc/modules/filtlong 2026-05-13T19:10:57,602 copying multiqc/modules/filtlong/__init__.py -> build/lib/multiqc/modules/filtlong 2026-05-13T19:10:57,604 copying multiqc/modules/filtlong/filtlong.py -> build/lib/multiqc/modules/filtlong 2026-05-13T19:10:57,607 creating build/lib/multiqc/modules/flash 2026-05-13T19:10:57,608 copying multiqc/modules/flash/__init__.py -> build/lib/multiqc/modules/flash 2026-05-13T19:10:57,610 copying multiqc/modules/flash/flash.py -> build/lib/multiqc/modules/flash 2026-05-13T19:10:57,613 creating build/lib/multiqc/modules/flexbar 2026-05-13T19:10:57,614 copying multiqc/modules/flexbar/__init__.py -> build/lib/multiqc/modules/flexbar 2026-05-13T19:10:57,616 copying multiqc/modules/flexbar/flexbar.py -> build/lib/multiqc/modules/flexbar 2026-05-13T19:10:57,618 creating build/lib/multiqc/modules/freyja 2026-05-13T19:10:57,619 copying multiqc/modules/freyja/__init__.py -> build/lib/multiqc/modules/freyja 2026-05-13T19:10:57,622 copying multiqc/modules/freyja/freyja.py -> build/lib/multiqc/modules/freyja 2026-05-13T19:10:57,624 creating build/lib/multiqc/modules/ganon 2026-05-13T19:10:57,625 copying multiqc/modules/ganon/__init__.py -> build/lib/multiqc/modules/ganon 2026-05-13T19:10:57,627 copying multiqc/modules/ganon/ganon.py -> build/lib/multiqc/modules/ganon 2026-05-13T19:10:57,630 creating build/lib/multiqc/modules/gatk 2026-05-13T19:10:57,631 copying multiqc/modules/gatk/__init__.py -> build/lib/multiqc/modules/gatk 2026-05-13T19:10:57,634 copying multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/lib/multiqc/modules/gatk 2026-05-13T19:10:57,638 copying multiqc/modules/gatk/base_recalibrator.py -> build/lib/multiqc/modules/gatk 2026-05-13T19:10:57,641 copying multiqc/modules/gatk/gatk.py -> build/lib/multiqc/modules/gatk 2026-05-13T19:10:57,643 copying multiqc/modules/gatk/utils.py -> build/lib/multiqc/modules/gatk 2026-05-13T19:10:57,646 copying multiqc/modules/gatk/varianteval.py -> build/lib/multiqc/modules/gatk 2026-05-13T19:10:57,650 creating build/lib/multiqc/modules/gffcompare 2026-05-13T19:10:57,651 copying multiqc/modules/gffcompare/__init__.py -> build/lib/multiqc/modules/gffcompare 2026-05-13T19:10:57,654 copying multiqc/modules/gffcompare/gffcompare.py -> build/lib/multiqc/modules/gffcompare 2026-05-13T19:10:57,657 creating build/lib/multiqc/modules/glimpse 2026-05-13T19:10:57,658 copying multiqc/modules/glimpse/__init__.py -> build/lib/multiqc/modules/glimpse 2026-05-13T19:10:57,660 copying multiqc/modules/glimpse/err_grp.py -> build/lib/multiqc/modules/glimpse 2026-05-13T19:10:57,663 copying multiqc/modules/glimpse/err_spl.py -> build/lib/multiqc/modules/glimpse 2026-05-13T19:10:57,665 copying multiqc/modules/glimpse/glimpse.py -> build/lib/multiqc/modules/glimpse 2026-05-13T19:10:57,667 creating build/lib/multiqc/modules/goleft_indexcov 2026-05-13T19:10:57,668 copying multiqc/modules/goleft_indexcov/__init__.py -> build/lib/multiqc/modules/goleft_indexcov 2026-05-13T19:10:57,670 copying multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/lib/multiqc/modules/goleft_indexcov 2026-05-13T19:10:57,673 creating build/lib/multiqc/modules/gopeaks 2026-05-13T19:10:57,674 copying multiqc/modules/gopeaks/__init__.py -> build/lib/multiqc/modules/gopeaks 2026-05-13T19:10:57,677 copying multiqc/modules/gopeaks/gopeaks.py -> build/lib/multiqc/modules/gopeaks 2026-05-13T19:10:57,679 creating build/lib/multiqc/modules/gtdbtk 2026-05-13T19:10:57,680 copying multiqc/modules/gtdbtk/__init__.py -> build/lib/multiqc/modules/gtdbtk 2026-05-13T19:10:57,682 copying multiqc/modules/gtdbtk/gtdbtk.py -> build/lib/multiqc/modules/gtdbtk 2026-05-13T19:10:57,685 creating build/lib/multiqc/modules/haplocheck 2026-05-13T19:10:57,686 copying multiqc/modules/haplocheck/__init__.py -> build/lib/multiqc/modules/haplocheck 2026-05-13T19:10:57,688 copying multiqc/modules/haplocheck/haplocheck.py -> build/lib/multiqc/modules/haplocheck 2026-05-13T19:10:57,690 creating build/lib/multiqc/modules/happy 2026-05-13T19:10:57,692 copying multiqc/modules/happy/__init__.py -> build/lib/multiqc/modules/happy 2026-05-13T19:10:57,694 copying multiqc/modules/happy/happy.py -> build/lib/multiqc/modules/happy 2026-05-13T19:10:57,696 creating build/lib/multiqc/modules/hicexplorer 2026-05-13T19:10:57,697 copying multiqc/modules/hicexplorer/__init__.py -> build/lib/multiqc/modules/hicexplorer 2026-05-13T19:10:57,700 copying multiqc/modules/hicexplorer/hicexplorer.py -> build/lib/multiqc/modules/hicexplorer 2026-05-13T19:10:57,703 creating build/lib/multiqc/modules/hicpro 2026-05-13T19:10:57,704 copying multiqc/modules/hicpro/__init__.py -> build/lib/multiqc/modules/hicpro 2026-05-13T19:10:57,706 copying multiqc/modules/hicpro/hicpro.py -> build/lib/multiqc/modules/hicpro 2026-05-13T19:10:57,710 creating build/lib/multiqc/modules/hicstuff 2026-05-13T19:10:57,711 copying multiqc/modules/hicstuff/__init__.py -> build/lib/multiqc/modules/hicstuff 2026-05-13T19:10:57,714 copying multiqc/modules/hicstuff/hicstuff.py -> build/lib/multiqc/modules/hicstuff 2026-05-13T19:10:57,718 creating build/lib/multiqc/modules/hicup 2026-05-13T19:10:57,719 copying multiqc/modules/hicup/__init__.py -> build/lib/multiqc/modules/hicup 2026-05-13T19:10:57,721 copying multiqc/modules/hicup/hicup.py -> build/lib/multiqc/modules/hicup 2026-05-13T19:10:57,724 creating build/lib/multiqc/modules/hifi_trimmer 2026-05-13T19:10:57,725 copying multiqc/modules/hifi_trimmer/__init__.py -> build/lib/multiqc/modules/hifi_trimmer 2026-05-13T19:10:57,727 copying multiqc/modules/hifi_trimmer/hifi_trimmer.py -> build/lib/multiqc/modules/hifi_trimmer 2026-05-13T19:10:57,730 creating build/lib/multiqc/modules/hifiasm 2026-05-13T19:10:57,731 copying multiqc/modules/hifiasm/__init__.py -> build/lib/multiqc/modules/hifiasm 2026-05-13T19:10:57,733 copying multiqc/modules/hifiasm/hifiasm.py -> build/lib/multiqc/modules/hifiasm 2026-05-13T19:10:57,735 creating build/lib/multiqc/modules/hisat2 2026-05-13T19:10:57,736 copying multiqc/modules/hisat2/__init__.py -> build/lib/multiqc/modules/hisat2 2026-05-13T19:10:57,739 copying multiqc/modules/hisat2/hisat2.py -> build/lib/multiqc/modules/hisat2 2026-05-13T19:10:57,741 creating build/lib/multiqc/modules/homer 2026-05-13T19:10:57,742 copying multiqc/modules/homer/__init__.py -> build/lib/multiqc/modules/homer 2026-05-13T19:10:57,745 copying multiqc/modules/homer/findpeaks.py -> build/lib/multiqc/modules/homer 2026-05-13T19:10:57,747 copying multiqc/modules/homer/homer.py -> build/lib/multiqc/modules/homer 2026-05-13T19:10:57,749 copying multiqc/modules/homer/tagdirectory.py -> build/lib/multiqc/modules/homer 2026-05-13T19:10:57,752 creating build/lib/multiqc/modules/hops 2026-05-13T19:10:57,753 copying multiqc/modules/hops/__init__.py -> build/lib/multiqc/modules/hops 2026-05-13T19:10:57,755 copying multiqc/modules/hops/hops.py -> build/lib/multiqc/modules/hops 2026-05-13T19:10:57,757 creating build/lib/multiqc/modules/hostile 2026-05-13T19:10:57,759 copying multiqc/modules/hostile/__init__.py -> build/lib/multiqc/modules/hostile 2026-05-13T19:10:57,761 copying multiqc/modules/hostile/hostile.py -> build/lib/multiqc/modules/hostile 2026-05-13T19:10:57,763 creating build/lib/multiqc/modules/htseq 2026-05-13T19:10:57,764 copying multiqc/modules/htseq/__init__.py -> build/lib/multiqc/modules/htseq 2026-05-13T19:10:57,767 copying multiqc/modules/htseq/htseq.py -> build/lib/multiqc/modules/htseq 2026-05-13T19:10:57,769 creating build/lib/multiqc/modules/humid 2026-05-13T19:10:57,770 copying multiqc/modules/humid/__init__.py -> build/lib/multiqc/modules/humid 2026-05-13T19:10:57,772 copying multiqc/modules/humid/clusters.py -> build/lib/multiqc/modules/humid 2026-05-13T19:10:57,775 copying multiqc/modules/humid/counts.py -> build/lib/multiqc/modules/humid 2026-05-13T19:10:57,777 copying multiqc/modules/humid/humid.py -> build/lib/multiqc/modules/humid 2026-05-13T19:10:57,779 copying multiqc/modules/humid/neighbours.py -> build/lib/multiqc/modules/humid 2026-05-13T19:10:57,781 copying multiqc/modules/humid/stats.py -> build/lib/multiqc/modules/humid 2026-05-13T19:10:57,783 creating build/lib/multiqc/modules/interop 2026-05-13T19:10:57,784 copying multiqc/modules/interop/__init__.py -> build/lib/multiqc/modules/interop 2026-05-13T19:10:57,787 copying multiqc/modules/interop/interop.py -> build/lib/multiqc/modules/interop 2026-05-13T19:10:57,790 creating build/lib/multiqc/modules/isoseq 2026-05-13T19:10:57,791 copying multiqc/modules/isoseq/__init__.py -> build/lib/multiqc/modules/isoseq 2026-05-13T19:10:57,793 copying multiqc/modules/isoseq/isoseq.py -> build/lib/multiqc/modules/isoseq 2026-05-13T19:10:57,796 creating build/lib/multiqc/modules/ivar 2026-05-13T19:10:57,798 copying multiqc/modules/ivar/__init__.py -> build/lib/multiqc/modules/ivar 2026-05-13T19:10:57,801 copying multiqc/modules/ivar/ivar.py -> build/lib/multiqc/modules/ivar 2026-05-13T19:10:57,803 creating build/lib/multiqc/modules/jcvi 2026-05-13T19:10:57,804 copying multiqc/modules/jcvi/__init__.py -> build/lib/multiqc/modules/jcvi 2026-05-13T19:10:57,806 copying multiqc/modules/jcvi/jcvi.py -> build/lib/multiqc/modules/jcvi 2026-05-13T19:10:57,809 creating build/lib/multiqc/modules/jellyfish 2026-05-13T19:10:57,810 copying multiqc/modules/jellyfish/__init__.py -> build/lib/multiqc/modules/jellyfish 2026-05-13T19:10:57,812 copying multiqc/modules/jellyfish/jellyfish.py -> build/lib/multiqc/modules/jellyfish 2026-05-13T19:10:57,815 creating build/lib/multiqc/modules/kaiju 2026-05-13T19:10:57,816 copying multiqc/modules/kaiju/__init__.py -> build/lib/multiqc/modules/kaiju 2026-05-13T19:10:57,818 copying multiqc/modules/kaiju/kaiju.py -> build/lib/multiqc/modules/kaiju 2026-05-13T19:10:57,821 creating build/lib/multiqc/modules/kallisto 2026-05-13T19:10:57,822 copying multiqc/modules/kallisto/__init__.py -> build/lib/multiqc/modules/kallisto 2026-05-13T19:10:57,825 copying multiqc/modules/kallisto/kallisto.py -> build/lib/multiqc/modules/kallisto 2026-05-13T19:10:57,827 creating build/lib/multiqc/modules/kat 2026-05-13T19:10:57,828 copying multiqc/modules/kat/__init__.py -> build/lib/multiqc/modules/kat 2026-05-13T19:10:57,831 copying multiqc/modules/kat/kat.py -> build/lib/multiqc/modules/kat 2026-05-13T19:10:57,833 creating build/lib/multiqc/modules/kraken 2026-05-13T19:10:57,834 copying multiqc/modules/kraken/__init__.py -> build/lib/multiqc/modules/kraken 2026-05-13T19:10:57,837 copying multiqc/modules/kraken/kraken.py -> build/lib/multiqc/modules/kraken 2026-05-13T19:10:57,839 creating build/lib/multiqc/modules/leehom 2026-05-13T19:10:57,840 copying multiqc/modules/leehom/__init__.py -> build/lib/multiqc/modules/leehom 2026-05-13T19:10:57,842 copying multiqc/modules/leehom/leehom.py -> build/lib/multiqc/modules/leehom 2026-05-13T19:10:57,844 creating build/lib/multiqc/modules/librarian 2026-05-13T19:10:57,845 copying multiqc/modules/librarian/__init__.py -> build/lib/multiqc/modules/librarian 2026-05-13T19:10:57,847 copying multiqc/modules/librarian/librarian.py -> build/lib/multiqc/modules/librarian 2026-05-13T19:10:57,850 creating build/lib/multiqc/modules/lima 2026-05-13T19:10:57,851 copying multiqc/modules/lima/__init__.py -> build/lib/multiqc/modules/lima 2026-05-13T19:10:57,853 copying multiqc/modules/lima/lima.py -> build/lib/multiqc/modules/lima 2026-05-13T19:10:57,856 creating build/lib/multiqc/modules/longranger 2026-05-13T19:10:57,857 copying multiqc/modules/longranger/__init__.py -> build/lib/multiqc/modules/longranger 2026-05-13T19:10:57,859 copying multiqc/modules/longranger/longranger.py -> build/lib/multiqc/modules/longranger 2026-05-13T19:10:57,862 creating build/lib/multiqc/modules/macs2 2026-05-13T19:10:57,862 copying multiqc/modules/macs2/__init__.py -> build/lib/multiqc/modules/macs2 2026-05-13T19:10:57,865 copying multiqc/modules/macs2/macs2.py -> build/lib/multiqc/modules/macs2 2026-05-13T19:10:57,867 creating build/lib/multiqc/modules/malt 2026-05-13T19:10:57,868 copying multiqc/modules/malt/__init__.py -> build/lib/multiqc/modules/malt 2026-05-13T19:10:57,870 copying multiqc/modules/malt/malt.py -> build/lib/multiqc/modules/malt 2026-05-13T19:10:57,873 creating build/lib/multiqc/modules/mapdamage 2026-05-13T19:10:57,874 copying multiqc/modules/mapdamage/__init__.py -> build/lib/multiqc/modules/mapdamage 2026-05-13T19:10:57,876 copying multiqc/modules/mapdamage/mapdamage.py -> build/lib/multiqc/modules/mapdamage 2026-05-13T19:10:57,879 creating build/lib/multiqc/modules/megahit 2026-05-13T19:10:57,880 copying multiqc/modules/megahit/__init__.py -> build/lib/multiqc/modules/megahit 2026-05-13T19:10:57,882 copying multiqc/modules/megahit/megahit.py -> build/lib/multiqc/modules/megahit 2026-05-13T19:10:57,884 creating build/lib/multiqc/modules/metaphlan 2026-05-13T19:10:57,885 copying multiqc/modules/metaphlan/__init__.py -> build/lib/multiqc/modules/metaphlan 2026-05-13T19:10:57,888 copying multiqc/modules/metaphlan/metaphlan.py -> build/lib/multiqc/modules/metaphlan 2026-05-13T19:10:57,890 creating build/lib/multiqc/modules/methurator 2026-05-13T19:10:57,891 copying multiqc/modules/methurator/__init__.py -> build/lib/multiqc/modules/methurator 2026-05-13T19:10:57,894 copying multiqc/modules/methurator/methurator.py -> build/lib/multiqc/modules/methurator 2026-05-13T19:10:57,897 creating build/lib/multiqc/modules/methylqa 2026-05-13T19:10:57,898 copying multiqc/modules/methylqa/__init__.py -> build/lib/multiqc/modules/methylqa 2026-05-13T19:10:57,900 copying multiqc/modules/methylqa/methylqa.py -> build/lib/multiqc/modules/methylqa 2026-05-13T19:10:57,902 creating build/lib/multiqc/modules/mgikit 2026-05-13T19:10:57,903 copying multiqc/modules/mgikit/__init__.py -> build/lib/multiqc/modules/mgikit 2026-05-13T19:10:57,906 copying multiqc/modules/mgikit/mgikit.py -> build/lib/multiqc/modules/mgikit 2026-05-13T19:10:57,909 creating build/lib/multiqc/modules/minionqc 2026-05-13T19:10:57,910 copying multiqc/modules/minionqc/__init__.py -> build/lib/multiqc/modules/minionqc 2026-05-13T19:10:57,912 copying multiqc/modules/minionqc/minionqc.py -> build/lib/multiqc/modules/minionqc 2026-05-13T19:10:57,915 creating build/lib/multiqc/modules/mirtop 2026-05-13T19:10:57,916 copying multiqc/modules/mirtop/__init__.py -> build/lib/multiqc/modules/mirtop 2026-05-13T19:10:57,918 copying multiqc/modules/mirtop/mirtop.py -> build/lib/multiqc/modules/mirtop 2026-05-13T19:10:57,920 creating build/lib/multiqc/modules/mirtrace 2026-05-13T19:10:57,921 copying multiqc/modules/mirtrace/__init__.py -> build/lib/multiqc/modules/mirtrace 2026-05-13T19:10:57,923 copying multiqc/modules/mirtrace/mirtrace.py -> build/lib/multiqc/modules/mirtrace 2026-05-13T19:10:57,926 creating build/lib/multiqc/modules/mosaicatcher 2026-05-13T19:10:57,927 copying multiqc/modules/mosaicatcher/__init__.py -> build/lib/multiqc/modules/mosaicatcher 2026-05-13T19:10:57,929 copying multiqc/modules/mosaicatcher/mosaicatcher.py -> build/lib/multiqc/modules/mosaicatcher 2026-05-13T19:10:57,931 creating build/lib/multiqc/modules/mosdepth 2026-05-13T19:10:57,932 copying multiqc/modules/mosdepth/__init__.py -> build/lib/multiqc/modules/mosdepth 2026-05-13T19:10:57,934 copying multiqc/modules/mosdepth/mosdepth.py -> build/lib/multiqc/modules/mosdepth 2026-05-13T19:10:57,937 creating build/lib/multiqc/modules/mosdepth/tests 2026-05-13T19:10:57,938 copying multiqc/modules/mosdepth/tests/__init__.py -> build/lib/multiqc/modules/mosdepth/tests 2026-05-13T19:10:57,940 copying multiqc/modules/mosdepth/tests/test_gen_stats.py -> build/lib/multiqc/modules/mosdepth/tests 2026-05-13T19:10:57,942 creating build/lib/multiqc/modules/motus 2026-05-13T19:10:57,943 copying multiqc/modules/motus/__init__.py -> build/lib/multiqc/modules/motus 2026-05-13T19:10:57,946 copying multiqc/modules/motus/motus.py -> build/lib/multiqc/modules/motus 2026-05-13T19:10:57,948 creating build/lib/multiqc/modules/mtnucratio 2026-05-13T19:10:57,949 copying multiqc/modules/mtnucratio/__init__.py -> build/lib/multiqc/modules/mtnucratio 2026-05-13T19:10:57,952 copying multiqc/modules/mtnucratio/mtnucratio.py -> build/lib/multiqc/modules/mtnucratio 2026-05-13T19:10:57,954 creating build/lib/multiqc/modules/multivcfanalyzer 2026-05-13T19:10:57,955 copying multiqc/modules/multivcfanalyzer/__init__.py -> build/lib/multiqc/modules/multivcfanalyzer 2026-05-13T19:10:57,957 copying multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/lib/multiqc/modules/multivcfanalyzer 2026-05-13T19:10:57,960 creating build/lib/multiqc/modules/nanoq 2026-05-13T19:10:57,961 copying multiqc/modules/nanoq/__init__.py -> build/lib/multiqc/modules/nanoq 2026-05-13T19:10:57,963 copying multiqc/modules/nanoq/nanoq.py -> build/lib/multiqc/modules/nanoq 2026-05-13T19:10:57,966 creating build/lib/multiqc/modules/nanostat 2026-05-13T19:10:57,967 copying multiqc/modules/nanostat/__init__.py -> build/lib/multiqc/modules/nanostat 2026-05-13T19:10:57,969 copying multiqc/modules/nanostat/nanostat.py -> build/lib/multiqc/modules/nanostat 2026-05-13T19:10:57,972 creating build/lib/multiqc/modules/nextclade 2026-05-13T19:10:57,973 copying multiqc/modules/nextclade/__init__.py -> build/lib/multiqc/modules/nextclade 2026-05-13T19:10:57,976 copying multiqc/modules/nextclade/nextclade.py -> build/lib/multiqc/modules/nextclade 2026-05-13T19:10:57,979 creating build/lib/multiqc/modules/ngsbits 2026-05-13T19:10:57,980 copying multiqc/modules/ngsbits/__init__.py -> build/lib/multiqc/modules/ngsbits 2026-05-13T19:10:57,982 copying multiqc/modules/ngsbits/mappingqc.py -> build/lib/multiqc/modules/ngsbits 2026-05-13T19:10:57,984 copying multiqc/modules/ngsbits/ngsbits.py -> build/lib/multiqc/modules/ngsbits 2026-05-13T19:10:57,987 copying multiqc/modules/ngsbits/readqc.py -> build/lib/multiqc/modules/ngsbits 2026-05-13T19:10:57,989 copying multiqc/modules/ngsbits/samplegender.py -> build/lib/multiqc/modules/ngsbits 2026-05-13T19:10:57,991 copying multiqc/modules/ngsbits/utils.py -> build/lib/multiqc/modules/ngsbits 2026-05-13T19:10:57,994 creating build/lib/multiqc/modules/ngsderive 2026-05-13T19:10:57,995 copying multiqc/modules/ngsderive/__init__.py -> build/lib/multiqc/modules/ngsderive 2026-05-13T19:10:57,997 copying multiqc/modules/ngsderive/ngsderive.py -> build/lib/multiqc/modules/ngsderive 2026-05-13T19:10:58,000 creating build/lib/multiqc/modules/nonpareil 2026-05-13T19:10:58,001 copying multiqc/modules/nonpareil/__init__.py -> build/lib/multiqc/modules/nonpareil 2026-05-13T19:10:58,003 copying multiqc/modules/nonpareil/nonpareil.py -> build/lib/multiqc/modules/nonpareil 2026-05-13T19:10:58,006 creating build/lib/multiqc/modules/odgi 2026-05-13T19:10:58,007 copying multiqc/modules/odgi/__init__.py -> build/lib/multiqc/modules/odgi 2026-05-13T19:10:58,009 copying multiqc/modules/odgi/odgi.py -> build/lib/multiqc/modules/odgi 2026-05-13T19:10:58,012 creating build/lib/multiqc/modules/optitype 2026-05-13T19:10:58,013 copying multiqc/modules/optitype/__init__.py -> build/lib/multiqc/modules/optitype 2026-05-13T19:10:58,015 copying multiqc/modules/optitype/optitype.py -> build/lib/multiqc/modules/optitype 2026-05-13T19:10:58,018 creating build/lib/multiqc/modules/pairtools 2026-05-13T19:10:58,019 copying multiqc/modules/pairtools/__init__.py -> build/lib/multiqc/modules/pairtools 2026-05-13T19:10:58,021 copying multiqc/modules/pairtools/pairtools.py -> build/lib/multiqc/modules/pairtools 2026-05-13T19:10:58,024 copying multiqc/modules/pairtools/params.yml -> build/lib/multiqc/modules/pairtools 2026-05-13T19:10:58,026 copying multiqc/modules/pairtools/utils.py -> build/lib/multiqc/modules/pairtools 2026-05-13T19:10:58,028 creating build/lib/multiqc/modules/pangolin 2026-05-13T19:10:58,029 copying multiqc/modules/pangolin/__init__.py -> build/lib/multiqc/modules/pangolin 2026-05-13T19:10:58,031 copying multiqc/modules/pangolin/pangolin.py -> build/lib/multiqc/modules/pangolin 2026-05-13T19:10:58,034 creating build/lib/multiqc/modules/pbmarkdup 2026-05-13T19:10:58,035 copying multiqc/modules/pbmarkdup/__init__.py -> build/lib/multiqc/modules/pbmarkdup 2026-05-13T19:10:58,037 copying multiqc/modules/pbmarkdup/pbmarkdup.py -> build/lib/multiqc/modules/pbmarkdup 2026-05-13T19:10:58,040 creating build/lib/multiqc/modules/peddy 2026-05-13T19:10:58,041 copying multiqc/modules/peddy/__init__.py -> build/lib/multiqc/modules/peddy 2026-05-13T19:10:58,043 copying multiqc/modules/peddy/peddy.py -> build/lib/multiqc/modules/peddy 2026-05-13T19:10:58,046 creating build/lib/multiqc/modules/percolator 2026-05-13T19:10:58,046 copying multiqc/modules/percolator/__init__.py -> build/lib/multiqc/modules/percolator 2026-05-13T19:10:58,049 copying multiqc/modules/percolator/percolator.py -> build/lib/multiqc/modules/percolator 2026-05-13T19:10:58,052 creating build/lib/multiqc/modules/phantompeakqualtools 2026-05-13T19:10:58,053 copying multiqc/modules/phantompeakqualtools/__init__.py -> build/lib/multiqc/modules/phantompeakqualtools 2026-05-13T19:10:58,055 copying multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/lib/multiqc/modules/phantompeakqualtools 2026-05-13T19:10:58,058 creating build/lib/multiqc/modules/picard 2026-05-13T19:10:58,059 copying multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,062 copying multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,065 copying multiqc/modules/picard/CrosscheckFingerprints.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,067 copying multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,070 copying multiqc/modules/picard/GcBiasMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,072 copying multiqc/modules/picard/HsMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,075 copying multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,078 copying multiqc/modules/picard/IlluminaLaneMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,081 copying multiqc/modules/picard/InsertSizeMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,083 copying multiqc/modules/picard/MarkDuplicates.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,086 copying multiqc/modules/picard/MarkIlluminaAdapters.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,088 copying multiqc/modules/picard/OxoGMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,091 copying multiqc/modules/picard/QualityByCycleMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,093 copying multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,095 copying multiqc/modules/picard/QualityYieldMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,097 copying multiqc/modules/picard/RnaSeqMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,100 copying multiqc/modules/picard/RrbsSummaryMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,103 copying multiqc/modules/picard/TargetedPcrMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,105 copying multiqc/modules/picard/ValidateSamFile.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,108 copying multiqc/modules/picard/VariantCallingMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,111 copying multiqc/modules/picard/WgsMetrics.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,114 copying multiqc/modules/picard/__init__.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,116 copying multiqc/modules/picard/picard.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,119 copying multiqc/modules/picard/util.py -> build/lib/multiqc/modules/picard 2026-05-13T19:10:58,121 creating build/lib/multiqc/modules/picard/tests 2026-05-13T19:10:58,122 copying multiqc/modules/picard/tests/__init__.py -> build/lib/multiqc/modules/picard/tests 2026-05-13T19:10:58,124 copying multiqc/modules/picard/tests/test_picard.py -> build/lib/multiqc/modules/picard/tests 2026-05-13T19:10:58,127 creating build/lib/multiqc/modules/porechop 2026-05-13T19:10:58,128 copying multiqc/modules/porechop/__init__.py -> build/lib/multiqc/modules/porechop 2026-05-13T19:10:58,130 copying multiqc/modules/porechop/porechop.py -> build/lib/multiqc/modules/porechop 2026-05-13T19:10:58,133 creating build/lib/multiqc/modules/preseq 2026-05-13T19:10:58,135 copying multiqc/modules/preseq/__init__.py -> build/lib/multiqc/modules/preseq 2026-05-13T19:10:58,137 copying multiqc/modules/preseq/preseq.py -> build/lib/multiqc/modules/preseq 2026-05-13T19:10:58,140 creating build/lib/multiqc/modules/prinseqplusplus 2026-05-13T19:10:58,142 copying multiqc/modules/prinseqplusplus/__init__.py -> build/lib/multiqc/modules/prinseqplusplus 2026-05-13T19:10:58,144 copying multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/lib/multiqc/modules/prinseqplusplus 2026-05-13T19:10:58,147 creating build/lib/multiqc/modules/prokka 2026-05-13T19:10:58,148 copying multiqc/modules/prokka/__init__.py -> build/lib/multiqc/modules/prokka 2026-05-13T19:10:58,151 copying multiqc/modules/prokka/prokka.py -> build/lib/multiqc/modules/prokka 2026-05-13T19:10:58,154 creating build/lib/multiqc/modules/purple 2026-05-13T19:10:58,155 copying multiqc/modules/purple/__init__.py -> build/lib/multiqc/modules/purple 2026-05-13T19:10:58,158 copying multiqc/modules/purple/purple.py -> build/lib/multiqc/modules/purple 2026-05-13T19:10:58,161 creating build/lib/multiqc/modules/pychopper 2026-05-13T19:10:58,162 copying multiqc/modules/pychopper/__init__.py -> build/lib/multiqc/modules/pychopper 2026-05-13T19:10:58,165 copying multiqc/modules/pychopper/pychopper.py -> build/lib/multiqc/modules/pychopper 2026-05-13T19:10:58,168 creating build/lib/multiqc/modules/pycoqc 2026-05-13T19:10:58,170 copying multiqc/modules/pycoqc/__init__.py -> build/lib/multiqc/modules/pycoqc 2026-05-13T19:10:58,172 copying multiqc/modules/pycoqc/pycoqc.py -> build/lib/multiqc/modules/pycoqc 2026-05-13T19:10:58,175 creating build/lib/multiqc/modules/qc3C 2026-05-13T19:10:58,177 copying multiqc/modules/qc3C/__init__.py -> build/lib/multiqc/modules/qc3C 2026-05-13T19:10:58,179 copying multiqc/modules/qc3C/qc3C.py -> build/lib/multiqc/modules/qc3C 2026-05-13T19:10:58,182 creating build/lib/multiqc/modules/qorts 2026-05-13T19:10:58,183 copying multiqc/modules/qorts/__init__.py -> build/lib/multiqc/modules/qorts 2026-05-13T19:10:58,185 copying multiqc/modules/qorts/qorts.py -> build/lib/multiqc/modules/qorts 2026-05-13T19:10:58,188 creating build/lib/multiqc/modules/qualimap 2026-05-13T19:10:58,189 copying multiqc/modules/qualimap/QM_BamQC.py -> build/lib/multiqc/modules/qualimap 2026-05-13T19:10:58,192 copying multiqc/modules/qualimap/QM_RNASeq.py -> build/lib/multiqc/modules/qualimap 2026-05-13T19:10:58,195 copying multiqc/modules/qualimap/__init__.py -> build/lib/multiqc/modules/qualimap 2026-05-13T19:10:58,198 copying multiqc/modules/qualimap/qualimap.py -> build/lib/multiqc/modules/qualimap 2026-05-13T19:10:58,200 creating build/lib/multiqc/modules/quast 2026-05-13T19:10:58,201 copying multiqc/modules/quast/__init__.py -> build/lib/multiqc/modules/quast 2026-05-13T19:10:58,203 copying multiqc/modules/quast/quast.py -> build/lib/multiqc/modules/quast 2026-05-13T19:10:58,206 creating build/lib/multiqc/modules/ribotish 2026-05-13T19:10:58,207 copying multiqc/modules/ribotish/__init__.py -> build/lib/multiqc/modules/ribotish 2026-05-13T19:10:58,209 copying multiqc/modules/ribotish/ribotish.py -> build/lib/multiqc/modules/ribotish 2026-05-13T19:10:58,212 creating build/lib/multiqc/modules/ribotish/tests 2026-05-13T19:10:58,213 copying multiqc/modules/ribotish/tests/__init__.py -> build/lib/multiqc/modules/ribotish/tests 2026-05-13T19:10:58,215 copying multiqc/modules/ribotish/tests/test_ribotish.py -> build/lib/multiqc/modules/ribotish/tests 2026-05-13T19:10:58,217 creating build/lib/multiqc/modules/ribowaltz 2026-05-13T19:10:58,218 copying multiqc/modules/ribowaltz/__init__.py -> build/lib/multiqc/modules/ribowaltz 2026-05-13T19:10:58,221 copying multiqc/modules/ribowaltz/ribowaltz.py -> build/lib/multiqc/modules/ribowaltz 2026-05-13T19:10:58,223 creating build/lib/multiqc/modules/riker 2026-05-13T19:10:58,224 copying multiqc/modules/riker/__init__.py -> build/lib/multiqc/modules/riker 2026-05-13T19:10:58,226 copying multiqc/modules/riker/alignment.py -> build/lib/multiqc/modules/riker 2026-05-13T19:10:58,229 copying multiqc/modules/riker/basic.py -> build/lib/multiqc/modules/riker 2026-05-13T19:10:58,231 copying multiqc/modules/riker/gcbias.py -> build/lib/multiqc/modules/riker 2026-05-13T19:10:58,234 copying multiqc/modules/riker/hybcap.py -> build/lib/multiqc/modules/riker 2026-05-13T19:10:58,236 copying multiqc/modules/riker/isize.py -> build/lib/multiqc/modules/riker 2026-05-13T19:10:58,239 copying multiqc/modules/riker/riker.py -> build/lib/multiqc/modules/riker 2026-05-13T19:10:58,241 copying multiqc/modules/riker/util.py -> build/lib/multiqc/modules/riker 2026-05-13T19:10:58,244 copying multiqc/modules/riker/wgs.py -> build/lib/multiqc/modules/riker 2026-05-13T19:10:58,247 creating build/lib/multiqc/modules/riker/tests 2026-05-13T19:10:58,248 copying multiqc/modules/riker/tests/__init__.py -> build/lib/multiqc/modules/riker/tests 2026-05-13T19:10:58,250 copying multiqc/modules/riker/tests/test_riker.py -> build/lib/multiqc/modules/riker/tests 2026-05-13T19:10:58,253 creating build/lib/multiqc/modules/rna_seqc 2026-05-13T19:10:58,254 copying multiqc/modules/rna_seqc/__init__.py -> build/lib/multiqc/modules/rna_seqc 2026-05-13T19:10:58,256 copying multiqc/modules/rna_seqc/rna_seqc.py -> build/lib/multiqc/modules/rna_seqc 2026-05-13T19:10:58,259 creating build/lib/multiqc/modules/rockhopper 2026-05-13T19:10:58,260 copying multiqc/modules/rockhopper/__init__.py -> build/lib/multiqc/modules/rockhopper 2026-05-13T19:10:58,262 copying multiqc/modules/rockhopper/rockhopper.py -> build/lib/multiqc/modules/rockhopper 2026-05-13T19:10:58,265 creating build/lib/multiqc/modules/rsem 2026-05-13T19:10:58,266 copying multiqc/modules/rsem/__init__.py -> build/lib/multiqc/modules/rsem 2026-05-13T19:10:58,268 copying multiqc/modules/rsem/rsem.py -> build/lib/multiqc/modules/rsem 2026-05-13T19:10:58,271 creating build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,272 copying multiqc/modules/rseqc/__init__.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,274 copying multiqc/modules/rseqc/bam_stat.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,276 copying multiqc/modules/rseqc/gene_body_coverage.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,279 copying multiqc/modules/rseqc/infer_experiment.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,281 copying multiqc/modules/rseqc/inner_distance.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,283 copying multiqc/modules/rseqc/junction_annotation.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,285 copying multiqc/modules/rseqc/junction_saturation.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,288 copying multiqc/modules/rseqc/read_distribution.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,290 copying multiqc/modules/rseqc/read_duplication.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,292 copying multiqc/modules/rseqc/read_gc.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,295 copying multiqc/modules/rseqc/rseqc.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,298 copying multiqc/modules/rseqc/tin.py -> build/lib/multiqc/modules/rseqc 2026-05-13T19:10:58,300 creating build/lib/multiqc/modules/salmon 2026-05-13T19:10:58,301 copying multiqc/modules/salmon/__init__.py -> build/lib/multiqc/modules/salmon 2026-05-13T19:10:58,303 copying multiqc/modules/salmon/salmon.py -> build/lib/multiqc/modules/salmon 2026-05-13T19:10:58,305 creating build/lib/multiqc/modules/sambamba 2026-05-13T19:10:58,306 copying multiqc/modules/sambamba/__init__.py -> build/lib/multiqc/modules/sambamba 2026-05-13T19:10:58,309 copying multiqc/modules/sambamba/markdup.py -> build/lib/multiqc/modules/sambamba 2026-05-13T19:10:58,311 copying multiqc/modules/sambamba/sambamba.py -> build/lib/multiqc/modules/sambamba 2026-05-13T19:10:58,313 creating build/lib/multiqc/modules/samblaster 2026-05-13T19:10:58,314 copying multiqc/modules/samblaster/__init__.py -> build/lib/multiqc/modules/samblaster 2026-05-13T19:10:58,316 copying multiqc/modules/samblaster/samblaster.py -> build/lib/multiqc/modules/samblaster 2026-05-13T19:10:58,318 creating build/lib/multiqc/modules/samtools 2026-05-13T19:10:58,320 copying multiqc/modules/samtools/__init__.py -> build/lib/multiqc/modules/samtools 2026-05-13T19:10:58,322 copying multiqc/modules/samtools/ampliconclip.py -> build/lib/multiqc/modules/samtools 2026-05-13T19:10:58,325 copying multiqc/modules/samtools/coverage.py -> build/lib/multiqc/modules/samtools 2026-05-13T19:10:58,327 copying multiqc/modules/samtools/flagstat.py -> build/lib/multiqc/modules/samtools 2026-05-13T19:10:58,330 copying multiqc/modules/samtools/idxstats.py -> build/lib/multiqc/modules/samtools 2026-05-13T19:10:58,332 copying multiqc/modules/samtools/markdup.py -> build/lib/multiqc/modules/samtools 2026-05-13T19:10:58,335 copying multiqc/modules/samtools/rmdup.py -> build/lib/multiqc/modules/samtools 2026-05-13T19:10:58,337 copying multiqc/modules/samtools/samtools.py -> build/lib/multiqc/modules/samtools 2026-05-13T19:10:58,340 copying multiqc/modules/samtools/stats.py -> build/lib/multiqc/modules/samtools 2026-05-13T19:10:58,343 creating build/lib/multiqc/modules/samtools/tests 2026-05-13T19:10:58,344 copying multiqc/modules/samtools/tests/__init__.py -> build/lib/multiqc/modules/samtools/tests 2026-05-13T19:10:58,346 copying multiqc/modules/samtools/tests/test_coverage.py -> build/lib/multiqc/modules/samtools/tests 2026-05-13T19:10:58,348 copying multiqc/modules/samtools/tests/test_flagstat.py -> build/lib/multiqc/modules/samtools/tests 2026-05-13T19:10:58,351 creating build/lib/multiqc/modules/sargasso 2026-05-13T19:10:58,352 copying multiqc/modules/sargasso/__init__.py -> build/lib/multiqc/modules/sargasso 2026-05-13T19:10:58,354 copying multiqc/modules/sargasso/sargasso.py -> build/lib/multiqc/modules/sargasso 2026-05-13T19:10:58,356 creating build/lib/multiqc/modules/seqera_cli 2026-05-13T19:10:58,357 copying multiqc/modules/seqera_cli/__init__.py -> build/lib/multiqc/modules/seqera_cli 2026-05-13T19:10:58,359 copying multiqc/modules/seqera_cli/seqera_cli.py -> build/lib/multiqc/modules/seqera_cli 2026-05-13T19:10:58,362 creating build/lib/multiqc/modules/seqfu 2026-05-13T19:10:58,363 copying multiqc/modules/seqfu/__init__.py -> build/lib/multiqc/modules/seqfu 2026-05-13T19:10:58,365 copying multiqc/modules/seqfu/seqfu.py -> build/lib/multiqc/modules/seqfu 2026-05-13T19:10:58,367 copying multiqc/modules/seqfu/stats.py -> build/lib/multiqc/modules/seqfu 2026-05-13T19:10:58,369 creating build/lib/multiqc/modules/seqfu/test 2026-05-13T19:10:58,370 copying multiqc/modules/seqfu/test/test_stats.py -> build/lib/multiqc/modules/seqfu/test 2026-05-13T19:10:58,373 creating build/lib/multiqc/modules/seqkit 2026-05-13T19:10:58,374 copying multiqc/modules/seqkit/__init__.py -> build/lib/multiqc/modules/seqkit 2026-05-13T19:10:58,376 copying multiqc/modules/seqkit/seqkit.py -> build/lib/multiqc/modules/seqkit 2026-05-13T19:10:58,379 copying multiqc/modules/seqkit/stats.py -> build/lib/multiqc/modules/seqkit 2026-05-13T19:10:58,381 creating build/lib/multiqc/modules/seqkit/tests 2026-05-13T19:10:58,382 copying multiqc/modules/seqkit/tests/__init__.py -> build/lib/multiqc/modules/seqkit/tests 2026-05-13T19:10:58,384 copying multiqc/modules/seqkit/tests/test_stats.py -> build/lib/multiqc/modules/seqkit/tests 2026-05-13T19:10:58,387 creating build/lib/multiqc/modules/sequali 2026-05-13T19:10:58,388 copying multiqc/modules/sequali/__init__.py -> build/lib/multiqc/modules/sequali 2026-05-13T19:10:58,390 copying multiqc/modules/sequali/sequali.py -> build/lib/multiqc/modules/sequali 2026-05-13T19:10:58,393 creating build/lib/multiqc/modules/seqwho 2026-05-13T19:10:58,394 copying multiqc/modules/seqwho/__init__.py -> build/lib/multiqc/modules/seqwho 2026-05-13T19:10:58,396 copying multiqc/modules/seqwho/seqwho.py -> build/lib/multiqc/modules/seqwho 2026-05-13T19:10:58,399 creating build/lib/multiqc/modules/seqyclean 2026-05-13T19:10:58,400 copying multiqc/modules/seqyclean/__init__.py -> build/lib/multiqc/modules/seqyclean 2026-05-13T19:10:58,402 copying multiqc/modules/seqyclean/seqyclean.py -> build/lib/multiqc/modules/seqyclean 2026-05-13T19:10:58,405 creating build/lib/multiqc/modules/sexdeterrmine 2026-05-13T19:10:58,406 copying multiqc/modules/sexdeterrmine/__init__.py -> build/lib/multiqc/modules/sexdeterrmine 2026-05-13T19:10:58,409 copying multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/lib/multiqc/modules/sexdeterrmine 2026-05-13T19:10:58,411 creating build/lib/multiqc/modules/sickle 2026-05-13T19:10:58,412 copying multiqc/modules/sickle/__init__.py -> build/lib/multiqc/modules/sickle 2026-05-13T19:10:58,414 copying multiqc/modules/sickle/sickle.py -> build/lib/multiqc/modules/sickle 2026-05-13T19:10:58,417 creating build/lib/multiqc/modules/sincei 2026-05-13T19:10:58,418 copying multiqc/modules/sincei/__init__.py -> build/lib/multiqc/modules/sincei 2026-05-13T19:10:58,420 copying multiqc/modules/sincei/_helpers.py -> build/lib/multiqc/modules/sincei 2026-05-13T19:10:58,422 copying multiqc/modules/sincei/scCountQC.py -> build/lib/multiqc/modules/sincei 2026-05-13T19:10:58,425 copying multiqc/modules/sincei/scFilterStats.py -> build/lib/multiqc/modules/sincei 2026-05-13T19:10:58,427 copying multiqc/modules/sincei/sincei.py -> build/lib/multiqc/modules/sincei 2026-05-13T19:10:58,430 creating build/lib/multiqc/modules/skewer 2026-05-13T19:10:58,431 copying multiqc/modules/skewer/__init__.py -> build/lib/multiqc/modules/skewer 2026-05-13T19:10:58,433 copying multiqc/modules/skewer/skewer.py -> build/lib/multiqc/modules/skewer 2026-05-13T19:10:58,435 creating build/lib/multiqc/modules/slamdunk 2026-05-13T19:10:58,436 copying multiqc/modules/slamdunk/__init__.py -> build/lib/multiqc/modules/slamdunk 2026-05-13T19:10:58,439 copying multiqc/modules/slamdunk/slamdunk.py -> build/lib/multiqc/modules/slamdunk 2026-05-13T19:10:58,441 creating build/lib/multiqc/modules/snippy 2026-05-13T19:10:58,442 copying multiqc/modules/snippy/__init__.py -> build/lib/multiqc/modules/snippy 2026-05-13T19:10:58,444 copying multiqc/modules/snippy/snippy.py -> build/lib/multiqc/modules/snippy 2026-05-13T19:10:58,447 creating build/lib/multiqc/modules/snpeff 2026-05-13T19:10:58,448 copying multiqc/modules/snpeff/__init__.py -> build/lib/multiqc/modules/snpeff 2026-05-13T19:10:58,450 copying multiqc/modules/snpeff/snpeff.py -> build/lib/multiqc/modules/snpeff 2026-05-13T19:10:58,452 creating build/lib/multiqc/modules/snpsplit 2026-05-13T19:10:58,454 copying multiqc/modules/snpsplit/__init__.py -> build/lib/multiqc/modules/snpsplit 2026-05-13T19:10:58,456 copying multiqc/modules/snpsplit/snpsplit.py -> build/lib/multiqc/modules/snpsplit 2026-05-13T19:10:58,459 creating build/lib/multiqc/modules/somalier 2026-05-13T19:10:58,460 copying multiqc/modules/somalier/__init__.py -> build/lib/multiqc/modules/somalier 2026-05-13T19:10:58,462 copying multiqc/modules/somalier/somalier.py -> build/lib/multiqc/modules/somalier 2026-05-13T19:10:58,465 creating build/lib/multiqc/modules/sompy 2026-05-13T19:10:58,466 copying multiqc/modules/sompy/__init__.py -> build/lib/multiqc/modules/sompy 2026-05-13T19:10:58,468 copying multiqc/modules/sompy/sompy.py -> build/lib/multiqc/modules/sompy 2026-05-13T19:10:58,471 creating build/lib/multiqc/modules/sortmerna 2026-05-13T19:10:58,472 copying multiqc/modules/sortmerna/__init__.py -> build/lib/multiqc/modules/sortmerna 2026-05-13T19:10:58,474 copying multiqc/modules/sortmerna/sortmerna.py -> build/lib/multiqc/modules/sortmerna 2026-05-13T19:10:58,477 creating build/lib/multiqc/modules/sourmash 2026-05-13T19:10:58,478 copying multiqc/modules/sourmash/__init__.py -> build/lib/multiqc/modules/sourmash 2026-05-13T19:10:58,480 copying multiqc/modules/sourmash/compare.py -> build/lib/multiqc/modules/sourmash 2026-05-13T19:10:58,483 copying multiqc/modules/sourmash/gather.py -> build/lib/multiqc/modules/sourmash 2026-05-13T19:10:58,485 copying multiqc/modules/sourmash/sourmash.py -> build/lib/multiqc/modules/sourmash 2026-05-13T19:10:58,488 creating build/lib/multiqc/modules/spaceranger 2026-05-13T19:10:58,489 copying multiqc/modules/spaceranger/__init__.py -> build/lib/multiqc/modules/spaceranger 2026-05-13T19:10:58,491 copying multiqc/modules/spaceranger/count.py -> build/lib/multiqc/modules/spaceranger 2026-05-13T19:10:58,494 copying multiqc/modules/spaceranger/spaceranger.py -> build/lib/multiqc/modules/spaceranger 2026-05-13T19:10:58,496 copying multiqc/modules/spaceranger/utils.py -> build/lib/multiqc/modules/spaceranger 2026-05-13T19:10:58,498 creating build/lib/multiqc/modules/stacks 2026-05-13T19:10:58,499 copying multiqc/modules/stacks/__init__.py -> build/lib/multiqc/modules/stacks 2026-05-13T19:10:58,502 copying multiqc/modules/stacks/stacks.py -> build/lib/multiqc/modules/stacks 2026-05-13T19:10:58,504 creating build/lib/multiqc/modules/star 2026-05-13T19:10:58,506 copying multiqc/modules/star/__init__.py -> build/lib/multiqc/modules/star 2026-05-13T19:10:58,508 copying multiqc/modules/star/star.py -> build/lib/multiqc/modules/star 2026-05-13T19:10:58,511 creating build/lib/multiqc/modules/supernova 2026-05-13T19:10:58,513 copying multiqc/modules/supernova/__init__.py -> build/lib/multiqc/modules/supernova 2026-05-13T19:10:58,515 copying multiqc/modules/supernova/supernova.py -> build/lib/multiqc/modules/supernova 2026-05-13T19:10:58,518 creating build/lib/multiqc/modules/sylphtax 2026-05-13T19:10:58,519 copying multiqc/modules/sylphtax/__init__.py -> build/lib/multiqc/modules/sylphtax 2026-05-13T19:10:58,522 copying multiqc/modules/sylphtax/sylphtax.py -> build/lib/multiqc/modules/sylphtax 2026-05-13T19:10:58,525 creating build/lib/multiqc/modules/telseq 2026-05-13T19:10:58,526 copying multiqc/modules/telseq/__init__.py -> build/lib/multiqc/modules/telseq 2026-05-13T19:10:58,528 copying multiqc/modules/telseq/telseq.py -> build/lib/multiqc/modules/telseq 2026-05-13T19:10:58,531 creating build/lib/multiqc/modules/theta2 2026-05-13T19:10:58,532 copying multiqc/modules/theta2/__init__.py -> build/lib/multiqc/modules/theta2 2026-05-13T19:10:58,534 copying multiqc/modules/theta2/theta2.py -> build/lib/multiqc/modules/theta2 2026-05-13T19:10:58,537 creating build/lib/multiqc/modules/tophat 2026-05-13T19:10:58,538 copying multiqc/modules/tophat/__init__.py -> build/lib/multiqc/modules/tophat 2026-05-13T19:10:58,540 copying multiqc/modules/tophat/tophat.py -> build/lib/multiqc/modules/tophat 2026-05-13T19:10:58,542 creating build/lib/multiqc/modules/trim_galore 2026-05-13T19:10:58,543 copying multiqc/modules/trim_galore/__init__.py -> build/lib/multiqc/modules/trim_galore 2026-05-13T19:10:58,546 copying multiqc/modules/trim_galore/trim_galore.py -> build/lib/multiqc/modules/trim_galore 2026-05-13T19:10:58,549 creating build/lib/multiqc/modules/trimmomatic 2026-05-13T19:10:58,550 copying multiqc/modules/trimmomatic/__init__.py -> build/lib/multiqc/modules/trimmomatic 2026-05-13T19:10:58,552 copying multiqc/modules/trimmomatic/trimmomatic.py -> build/lib/multiqc/modules/trimmomatic 2026-05-13T19:10:58,554 creating build/lib/multiqc/modules/truvari 2026-05-13T19:10:58,555 copying multiqc/modules/truvari/__init__.py -> build/lib/multiqc/modules/truvari 2026-05-13T19:10:58,558 copying multiqc/modules/truvari/truvari.py -> build/lib/multiqc/modules/truvari 2026-05-13T19:10:58,560 creating build/lib/multiqc/modules/umicollapse 2026-05-13T19:10:58,561 copying multiqc/modules/umicollapse/__init__.py -> build/lib/multiqc/modules/umicollapse 2026-05-13T19:10:58,564 copying multiqc/modules/umicollapse/umicollapse.py -> build/lib/multiqc/modules/umicollapse 2026-05-13T19:10:58,566 creating build/lib/multiqc/modules/umicollapse/tests 2026-05-13T19:10:58,568 copying multiqc/modules/umicollapse/tests/__init__.py -> build/lib/multiqc/modules/umicollapse/tests 2026-05-13T19:10:58,570 copying multiqc/modules/umicollapse/tests/test_umicollapse.py -> build/lib/multiqc/modules/umicollapse/tests 2026-05-13T19:10:58,572 creating build/lib/multiqc/modules/umitools 2026-05-13T19:10:58,573 copying multiqc/modules/umitools/__init__.py -> build/lib/multiqc/modules/umitools 2026-05-13T19:10:58,576 copying multiqc/modules/umitools/umitools.py -> build/lib/multiqc/modules/umitools 2026-05-13T19:10:58,579 creating build/lib/multiqc/modules/umitools/tests 2026-05-13T19:10:58,580 copying multiqc/modules/umitools/tests/__init__.py -> build/lib/multiqc/modules/umitools/tests 2026-05-13T19:10:58,582 copying multiqc/modules/umitools/tests/test_umitools.py -> build/lib/multiqc/modules/umitools/tests 2026-05-13T19:10:58,585 creating build/lib/multiqc/modules/varscan2 2026-05-13T19:10:58,586 copying multiqc/modules/varscan2/__init__.py -> build/lib/multiqc/modules/varscan2 2026-05-13T19:10:58,588 copying multiqc/modules/varscan2/varscan2.py -> build/lib/multiqc/modules/varscan2 2026-05-13T19:10:58,591 creating build/lib/multiqc/modules/vcftools 2026-05-13T19:10:58,593 copying multiqc/modules/vcftools/__init__.py -> build/lib/multiqc/modules/vcftools 2026-05-13T19:10:58,595 copying multiqc/modules/vcftools/relatedness2.py -> build/lib/multiqc/modules/vcftools 2026-05-13T19:10:58,598 copying multiqc/modules/vcftools/tstv_by_count.py -> build/lib/multiqc/modules/vcftools 2026-05-13T19:10:58,601 copying multiqc/modules/vcftools/tstv_by_qual.py -> build/lib/multiqc/modules/vcftools 2026-05-13T19:10:58,603 copying multiqc/modules/vcftools/tstv_summary.py -> build/lib/multiqc/modules/vcftools 2026-05-13T19:10:58,606 copying multiqc/modules/vcftools/vcftools.py -> build/lib/multiqc/modules/vcftools 2026-05-13T19:10:58,608 creating build/lib/multiqc/modules/vep 2026-05-13T19:10:58,609 copying multiqc/modules/vep/__init__.py -> build/lib/multiqc/modules/vep 2026-05-13T19:10:58,612 copying multiqc/modules/vep/vep.py -> build/lib/multiqc/modules/vep 2026-05-13T19:10:58,614 creating build/lib/multiqc/modules/verifybamid 2026-05-13T19:10:58,615 copying multiqc/modules/verifybamid/__init__.py -> build/lib/multiqc/modules/verifybamid 2026-05-13T19:10:58,617 copying multiqc/modules/verifybamid/verifybamid.py -> build/lib/multiqc/modules/verifybamid 2026-05-13T19:10:58,620 creating build/lib/multiqc/modules/vg 2026-05-13T19:10:58,621 copying multiqc/modules/vg/__init__.py -> build/lib/multiqc/modules/vg 2026-05-13T19:10:58,623 copying multiqc/modules/vg/vg.py -> build/lib/multiqc/modules/vg 2026-05-13T19:10:58,626 creating build/lib/multiqc/modules/whatshap 2026-05-13T19:10:58,627 copying multiqc/modules/whatshap/__init__.py -> build/lib/multiqc/modules/whatshap 2026-05-13T19:10:58,629 copying multiqc/modules/whatshap/whatshap.py -> build/lib/multiqc/modules/whatshap 2026-05-13T19:10:58,632 creating build/lib/multiqc/modules/xengsort 2026-05-13T19:10:58,633 copying multiqc/modules/xengsort/__init__.py -> build/lib/multiqc/modules/xengsort 2026-05-13T19:10:58,635 copying multiqc/modules/xengsort/xengsort.py -> build/lib/multiqc/modules/xengsort 2026-05-13T19:10:58,638 creating build/lib/multiqc/modules/xenium 2026-05-13T19:10:58,639 copying multiqc/modules/xenium/__init__.py -> build/lib/multiqc/modules/xenium 2026-05-13T19:10:58,641 copying multiqc/modules/xenium/xenium.py -> build/lib/multiqc/modules/xenium 2026-05-13T19:10:58,644 creating build/lib/multiqc/modules/xenome 2026-05-13T19:10:58,645 copying multiqc/modules/xenome/__init__.py -> build/lib/multiqc/modules/xenome 2026-05-13T19:10:58,647 copying multiqc/modules/xenome/xenome.py -> build/lib/multiqc/modules/xenome 2026-05-13T19:10:58,650 creating build/lib/multiqc/plots 2026-05-13T19:10:58,651 copying multiqc/plots/__init__.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,653 copying multiqc/plots/bargraph.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,657 copying multiqc/plots/box.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,660 copying multiqc/plots/heatmap.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,663 copying multiqc/plots/linegraph.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,666 copying multiqc/plots/plot.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,670 copying multiqc/plots/scatter.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,673 copying multiqc/plots/table.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,675 copying multiqc/plots/table_object.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,678 copying multiqc/plots/utils.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,681 copying multiqc/plots/violin.py -> build/lib/multiqc/plots 2026-05-13T19:10:58,684 creating build/lib/multiqc/templates 2026-05-13T19:10:58,685 copying multiqc/templates/__init__.py -> build/lib/multiqc/templates 2026-05-13T19:10:58,687 creating build/lib/multiqc/templates/default 2026-05-13T19:10:58,688 copying multiqc/templates/default/CLAUDE.md -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,691 copying multiqc/templates/default/README.md -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,693 copying multiqc/templates/default/__init__.py -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,695 copying multiqc/templates/default/base.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,697 copying multiqc/templates/default/content.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,700 copying multiqc/templates/default/foot.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,702 copying multiqc/templates/default/footer.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,704 copying multiqc/templates/default/general_stats.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,707 copying multiqc/templates/default/head.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,709 copying multiqc/templates/default/header.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,712 copying multiqc/templates/default/includes.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,714 copying multiqc/templates/default/nav.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,717 copying multiqc/templates/default/package-lock.json -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,720 copying multiqc/templates/default/package.json -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,722 copying multiqc/templates/default/theme_toggle.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,724 copying multiqc/templates/default/toolbox.html -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,726 copying multiqc/templates/default/vite.config.js -> build/lib/multiqc/templates/default 2026-05-13T19:10:58,729 creating build/lib/multiqc/templates/default/assets/img 2026-05-13T19:10:58,730 copying multiqc/templates/default/assets/img/Anthropic_logo.svg -> build/lib/multiqc/templates/default/assets/img 2026-05-13T19:10:58,732 copying multiqc/templates/default/assets/img/MultiQC_icon.svg -> build/lib/multiqc/templates/default/assets/img 2026-05-13T19:10:58,734 copying multiqc/templates/default/assets/img/MultiQC_logo.svg -> build/lib/multiqc/templates/default/assets/img 2026-05-13T19:10:58,737 copying multiqc/templates/default/assets/img/OpenAI_logo.svg -> build/lib/multiqc/templates/default/assets/img 2026-05-13T19:10:58,739 copying multiqc/templates/default/assets/img/Seqera_AI_icon.svg -> build/lib/multiqc/templates/default/assets/img 2026-05-13T19:10:58,741 copying multiqc/templates/default/assets/img/Seqera_logo.svg -> build/lib/multiqc/templates/default/assets/img 2026-05-13T19:10:58,744 creating build/lib/multiqc/templates/default/assets/js/packages 2026-05-13T19:10:58,745 copying multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-05-13T19:10:58,747 copying multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-05-13T19:10:58,751 copying multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-05-13T19:10:58,754 copying multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-05-13T19:10:58,757 copying multiqc/templates/default/assets/js/packages/jszip.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-05-13T19:10:58,761 copying multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-05-13T19:10:58,764 copying multiqc/templates/default/assets/js/packages/plotly-3.1.2.custom.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-05-13T19:10:58,785 copying multiqc/templates/default/assets/js/packages/showdown.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-05-13T19:10:58,788 creating build/lib/multiqc/templates/default/compiled/css 2026-05-13T19:10:58,790 copying multiqc/templates/default/compiled/css/multiqc.min.css -> build/lib/multiqc/templates/default/compiled/css 2026-05-13T19:10:58,795 creating build/lib/multiqc/templates/default/compiled/js 2026-05-13T19:10:58,796 copying multiqc/templates/default/compiled/js/multiqc.min.js -> build/lib/multiqc/templates/default/compiled/js 2026-05-13T19:10:58,803 creating build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,804 copying multiqc/templates/default/src/js/ai-helpers.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,808 copying multiqc/templates/default/src/js/ai.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,811 copying multiqc/templates/default/src/js/color-mode.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,813 copying multiqc/templates/default/src/js/decompress.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,816 copying multiqc/templates/default/src/js/doi.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,818 copying multiqc/templates/default/src/js/flat.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,820 copying multiqc/templates/default/src/js/main-js.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,822 copying multiqc/templates/default/src/js/main.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,824 copying multiqc/templates/default/src/js/multiqc.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,826 copying multiqc/templates/default/src/js/plotting.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,829 copying multiqc/templates/default/src/js/render.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,831 copying multiqc/templates/default/src/js/statuses.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,833 copying multiqc/templates/default/src/js/tables.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,836 copying multiqc/templates/default/src/js/toolbox.js -> build/lib/multiqc/templates/default/src/js 2026-05-13T19:10:58,838 creating build/lib/multiqc/templates/default/src/js/plots 2026-05-13T19:10:58,839 copying multiqc/templates/default/src/js/plots/bar.js -> build/lib/multiqc/templates/default/src/js/plots 2026-05-13T19:10:58,842 copying multiqc/templates/default/src/js/plots/box.js -> build/lib/multiqc/templates/default/src/js/plots 2026-05-13T19:10:58,844 copying multiqc/templates/default/src/js/plots/heatmap.js -> build/lib/multiqc/templates/default/src/js/plots 2026-05-13T19:10:58,847 copying multiqc/templates/default/src/js/plots/line.js -> build/lib/multiqc/templates/default/src/js/plots 2026-05-13T19:10:58,849 copying multiqc/templates/default/src/js/plots/scatter.js -> build/lib/multiqc/templates/default/src/js/plots 2026-05-13T19:10:58,852 copying multiqc/templates/default/src/js/plots/violin.js -> build/lib/multiqc/templates/default/src/js/plots 2026-05-13T19:10:58,855 creating build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,856 copying multiqc/templates/default/src/js/toolbox/ai.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,859 copying multiqc/templates/default/src/js/toolbox/citations.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,861 copying multiqc/templates/default/src/js/toolbox/constants.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,863 copying multiqc/templates/default/src/js/toolbox/export.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,865 copying multiqc/templates/default/src/js/toolbox/filters.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,867 copying multiqc/templates/default/src/js/toolbox/help.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,870 copying multiqc/templates/default/src/js/toolbox/hide.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,872 copying multiqc/templates/default/src/js/toolbox/highlights.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,875 copying multiqc/templates/default/src/js/toolbox/rename.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,877 copying multiqc/templates/default/src/js/toolbox/save-load.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,880 copying multiqc/templates/default/src/js/toolbox/utils.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-05-13T19:10:58,882 creating build/lib/multiqc/templates/default/src/scss 2026-05-13T19:10:58,883 copying multiqc/templates/default/src/scss/_colors.scss -> build/lib/multiqc/templates/default/src/scss 2026-05-13T19:10:58,886 copying multiqc/templates/default/src/scss/_variables.scss -> build/lib/multiqc/templates/default/src/scss 2026-05-13T19:10:58,889 copying multiqc/templates/default/src/scss/custom.scss -> build/lib/multiqc/templates/default/src/scss 2026-05-13T19:10:58,894 copying multiqc/templates/default/src/scss/main.scss -> build/lib/multiqc/templates/default/src/scss 2026-05-13T19:10:58,898 creating build/lib/multiqc/templates/default/src/scss/themes/dark 2026-05-13T19:10:58,900 copying multiqc/templates/default/src/scss/themes/dark/_colors.scss -> build/lib/multiqc/templates/default/src/scss/themes/dark 2026-05-13T19:10:58,902 copying multiqc/templates/default/src/scss/themes/dark/custom.scss -> build/lib/multiqc/templates/default/src/scss/themes/dark 2026-05-13T19:10:58,904 creating build/lib/multiqc/templates/default/toolbox 2026-05-13T19:10:58,905 copying multiqc/templates/default/toolbox/about.html -> build/lib/multiqc/templates/default/toolbox 2026-05-13T19:10:58,907 copying multiqc/templates/default/toolbox/ai.html -> build/lib/multiqc/templates/default/toolbox 2026-05-13T19:10:58,909 copying multiqc/templates/default/toolbox/buttons.html -> build/lib/multiqc/templates/default/toolbox 2026-05-13T19:10:58,911 copying multiqc/templates/default/toolbox/citations.html -> build/lib/multiqc/templates/default/toolbox 2026-05-13T19:10:58,913 copying multiqc/templates/default/toolbox/export.html -> build/lib/multiqc/templates/default/toolbox 2026-05-13T19:10:58,916 copying multiqc/templates/default/toolbox/hide.html -> build/lib/multiqc/templates/default/toolbox 2026-05-13T19:10:58,918 copying multiqc/templates/default/toolbox/highlight.html -> build/lib/multiqc/templates/default/toolbox 2026-05-13T19:10:58,920 copying multiqc/templates/default/toolbox/rename.html -> build/lib/multiqc/templates/default/toolbox 2026-05-13T19:10:58,922 copying multiqc/templates/default/toolbox/save.html -> build/lib/multiqc/templates/default/toolbox 2026-05-13T19:10:58,924 creating build/lib/multiqc/templates/disco 2026-05-13T19:10:58,925 copying multiqc/templates/disco/README.md -> build/lib/multiqc/templates/disco 2026-05-13T19:10:58,927 copying multiqc/templates/disco/__init__.py -> build/lib/multiqc/templates/disco 2026-05-13T19:10:58,929 copying multiqc/templates/disco/package-lock.json -> build/lib/multiqc/templates/disco 2026-05-13T19:10:58,932 copying multiqc/templates/disco/package.json -> build/lib/multiqc/templates/disco 2026-05-13T19:10:58,934 copying multiqc/templates/disco/vite.config.js -> build/lib/multiqc/templates/disco 2026-05-13T19:10:58,936 creating build/lib/multiqc/templates/disco/compiled/css 2026-05-13T19:10:58,938 copying multiqc/templates/disco/compiled/css/multiqc.min.css -> build/lib/multiqc/templates/disco/compiled/css 2026-05-13T19:10:58,944 creating build/lib/multiqc/templates/disco/compiled/js 2026-05-13T19:10:58,946 copying multiqc/templates/disco/compiled/js/multiqc.min.js -> build/lib/multiqc/templates/disco/compiled/js 2026-05-13T19:10:58,951 creating build/lib/multiqc/templates/disco/src/js 2026-05-13T19:10:58,953 copying multiqc/templates/disco/src/js/main.js -> build/lib/multiqc/templates/disco/src/js 2026-05-13T19:10:58,955 creating build/lib/multiqc/templates/disco/src/scss 2026-05-13T19:10:58,956 copying multiqc/templates/disco/src/scss/_colors.scss -> build/lib/multiqc/templates/disco/src/scss 2026-05-13T19:10:58,959 copying multiqc/templates/disco/src/scss/custom.scss -> build/lib/multiqc/templates/disco/src/scss 2026-05-13T19:10:58,961 copying multiqc/templates/disco/src/scss/main.scss -> build/lib/multiqc/templates/disco/src/scss 2026-05-13T19:10:58,963 creating build/lib/multiqc/templates/gathered 2026-05-13T19:10:58,964 copying multiqc/templates/gathered/__init__.py -> build/lib/multiqc/templates/gathered 2026-05-13T19:10:58,966 copying multiqc/templates/gathered/content.html -> build/lib/multiqc/templates/gathered 2026-05-13T19:10:58,969 copying multiqc/templates/gathered/nav.html -> build/lib/multiqc/templates/gathered 2026-05-13T19:10:58,971 creating build/lib/multiqc/templates/geo 2026-05-13T19:10:58,972 copying multiqc/templates/geo/__init__.py -> build/lib/multiqc/templates/geo 2026-05-13T19:10:58,974 creating build/lib/multiqc/templates/geo/assets/css 2026-05-13T19:10:58,976 copying multiqc/templates/geo/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/geo/assets/css 2026-05-13T19:10:58,981 creating build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:58,982 copying multiqc/templates/geo/assets/img/emailme.gif -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:58,984 copying multiqc/templates/geo/assets/img/flames.gif -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:58,987 copying multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:58,990 copying multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:58,993 copying multiqc/templates/geo/assets/img/hot.gif -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:58,996 copying multiqc/templates/geo/assets/img/mchammer.gif -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:59,000 copying multiqc/templates/geo/assets/img/microfab.gif -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:59,003 copying multiqc/templates/geo/assets/img/new.gif -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:59,005 copying multiqc/templates/geo/assets/img/new2.gif -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:59,008 copying multiqc/templates/geo/assets/img/progress.gif -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:59,010 copying multiqc/templates/geo/assets/img/rainbow.gif -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:59,013 copying multiqc/templates/geo/assets/img/stars.gif -> build/lib/multiqc/templates/geo/assets/img 2026-05-13T19:10:59,015 creating build/lib/multiqc/templates/original 2026-05-13T19:10:59,016 copying multiqc/templates/original/__init__.py -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,019 copying multiqc/templates/original/base.html -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,021 copying multiqc/templates/original/content.html -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,024 copying multiqc/templates/original/foot.html -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,027 copying multiqc/templates/original/footer.html -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,029 copying multiqc/templates/original/general_stats.html -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,031 copying multiqc/templates/original/head.html -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,034 copying multiqc/templates/original/header.html -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,037 copying multiqc/templates/original/includes.html -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,039 copying multiqc/templates/original/nav.html -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,041 copying multiqc/templates/original/toolbox.html -> build/lib/multiqc/templates/original 2026-05-13T19:10:59,044 creating build/lib/multiqc/templates/original/assets/css 2026-05-13T19:10:59,046 copying multiqc/templates/original/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/original/assets/css 2026-05-13T19:10:59,091 copying multiqc/templates/original/assets/css/default_multiqc.css -> build/lib/multiqc/templates/original/assets/css 2026-05-13T19:10:59,094 copying multiqc/templates/original/assets/css/jquery.toast.css -> build/lib/multiqc/templates/original/assets/css 2026-05-13T19:10:59,097 creating build/lib/multiqc/templates/original/assets/fonts 2026-05-13T19:10:59,098 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.eot -> build/lib/multiqc/templates/original/assets/fonts 2026-05-13T19:10:59,101 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.svg -> build/lib/multiqc/templates/original/assets/fonts 2026-05-13T19:10:59,105 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.ttf -> build/lib/multiqc/templates/original/assets/fonts 2026-05-13T19:10:59,109 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff -> build/lib/multiqc/templates/original/assets/fonts 2026-05-13T19:10:59,112 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff2 -> build/lib/multiqc/templates/original/assets/fonts 2026-05-13T19:10:59,115 creating build/lib/multiqc/templates/original/assets/img 2026-05-13T19:10:59,116 copying multiqc/templates/original/assets/img/MultiQC_logo.png -> build/lib/multiqc/templates/original/assets/img 2026-05-13T19:10:59,119 copying multiqc/templates/original/assets/img/MultiQC_logo_dark.svg -> build/lib/multiqc/templates/original/assets/img 2026-05-13T19:10:59,121 copying multiqc/templates/original/assets/img/favicon-16x16.png -> build/lib/multiqc/templates/original/assets/img 2026-05-13T19:10:59,123 copying multiqc/templates/original/assets/img/favicon-32x32.png -> build/lib/multiqc/templates/original/assets/img 2026-05-13T19:10:59,126 copying multiqc/templates/original/assets/img/favicon-96x96.png -> build/lib/multiqc/templates/original/assets/img 2026-05-13T19:10:59,129 copying multiqc/templates/original/assets/img/seqera_logo.png -> build/lib/multiqc/templates/original/assets/img 2026-05-13T19:10:59,131 copying multiqc/templates/original/assets/img/seqera_logo_mono.png -> build/lib/multiqc/templates/original/assets/img 2026-05-13T19:10:59,133 creating build/lib/multiqc/templates/original/assets/js 2026-05-13T19:10:59,134 copying multiqc/templates/original/assets/js/ai-helpers.js -> build/lib/multiqc/templates/original/assets/js 2026-05-13T19:10:59,138 copying multiqc/templates/original/assets/js/ai.js -> build/lib/multiqc/templates/original/assets/js 2026-05-13T19:10:59,141 copying multiqc/templates/original/assets/js/decompress.js -> build/lib/multiqc/templates/original/assets/js 2026-05-13T19:10:59,144 copying multiqc/templates/original/assets/js/flat.js -> build/lib/multiqc/templates/original/assets/js 2026-05-13T19:10:59,146 copying multiqc/templates/original/assets/js/multiqc.js -> build/lib/multiqc/templates/original/assets/js 2026-05-13T19:10:59,148 copying multiqc/templates/original/assets/js/plotting.js -> build/lib/multiqc/templates/original/assets/js 2026-05-13T19:10:59,153 copying multiqc/templates/original/assets/js/render.js -> build/lib/multiqc/templates/original/assets/js 2026-05-13T19:10:59,157 copying multiqc/templates/original/assets/js/tables.js -> build/lib/multiqc/templates/original/assets/js 2026-05-13T19:10:59,160 copying multiqc/templates/original/assets/js/toolbox.js -> build/lib/multiqc/templates/original/assets/js 2026-05-13T19:10:59,163 creating build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,165 copying multiqc/templates/original/assets/js/packages/FileSaver.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,167 copying multiqc/templates/original/assets/js/packages/bootstrap.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,171 copying multiqc/templates/original/assets/js/packages/jquery-3.1.1.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,175 copying multiqc/templates/original/assets/js/packages/jquery-ui.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,180 copying multiqc/templates/original/assets/js/packages/jquery.tablesorter.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,183 copying multiqc/templates/original/assets/js/packages/jquery.toast.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,186 copying multiqc/templates/original/assets/js/packages/jszip.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,191 copying multiqc/templates/original/assets/js/packages/pako_inflate.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,195 copying multiqc/templates/original/assets/js/packages/plotly-2.27.0.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,482 copying multiqc/templates/original/assets/js/packages/plotly-2.27.0.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,564 copying multiqc/templates/original/assets/js/packages/showdown.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-05-13T19:10:59,568 creating build/lib/multiqc/templates/original/assets/js/plots 2026-05-13T19:10:59,570 copying multiqc/templates/original/assets/js/plots/bar.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-05-13T19:10:59,573 copying multiqc/templates/original/assets/js/plots/box.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-05-13T19:10:59,575 copying multiqc/templates/original/assets/js/plots/heatmap.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-05-13T19:10:59,578 copying multiqc/templates/original/assets/js/plots/line.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-05-13T19:10:59,581 copying multiqc/templates/original/assets/js/plots/scatter.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-05-13T19:10:59,584 copying multiqc/templates/original/assets/js/plots/violin.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-05-13T19:10:59,587 creating build/lib/multiqc/templates/sections 2026-05-13T19:10:59,588 copying multiqc/templates/sections/__init__.py -> build/lib/multiqc/templates/sections 2026-05-13T19:10:59,590 copying multiqc/templates/sections/content.html -> build/lib/multiqc/templates/sections 2026-05-13T19:10:59,592 creating build/lib/multiqc/templates/simple 2026-05-13T19:10:59,593 copying multiqc/templates/simple/__init__.py -> build/lib/multiqc/templates/simple 2026-05-13T19:10:59,596 copying multiqc/templates/simple/foot.html -> build/lib/multiqc/templates/simple 2026-05-13T19:10:59,598 copying multiqc/templates/simple/footer.html -> build/lib/multiqc/templates/simple 2026-05-13T19:10:59,600 copying multiqc/templates/simple/header.html -> build/lib/multiqc/templates/simple 2026-05-13T19:10:59,603 copying multiqc/templates/simple/includes.html -> build/lib/multiqc/templates/simple 2026-05-13T19:10:59,605 copying multiqc/templates/simple/nav.html -> build/lib/multiqc/templates/simple 2026-05-13T19:10:59,607 copying multiqc/templates/simple/toolbox.html -> build/lib/multiqc/templates/simple 2026-05-13T19:10:59,610 creating build/lib/multiqc/utils 2026-05-13T19:10:59,611 copying multiqc/utils/__init__.py -> build/lib/multiqc/utils 2026-05-13T19:10:59,613 copying multiqc/utils/config.py -> build/lib/multiqc/utils 2026-05-13T19:10:59,615 copying multiqc/utils/config_schema.json -> build/lib/multiqc/utils 2026-05-13T19:10:59,619 copying multiqc/utils/config_schema.py -> build/lib/multiqc/utils 2026-05-13T19:10:59,623 copying multiqc/utils/material_icons.py -> build/lib/multiqc/utils 2026-05-13T19:10:59,625 copying multiqc/utils/megaqc.py -> build/lib/multiqc/utils 2026-05-13T19:10:59,627 copying multiqc/utils/mqc_colour.py -> build/lib/multiqc/utils 2026-05-13T19:10:59,630 copying multiqc/utils/pyaml_env.py -> build/lib/multiqc/utils 2026-05-13T19:10:59,633 copying multiqc/utils/report.py -> build/lib/multiqc/utils 2026-05-13T19:10:59,635 copying multiqc/utils/testing.py -> build/lib/multiqc/utils 2026-05-13T19:10:59,637 copying multiqc/utils/util_functions.py -> build/lib/multiqc/utils 2026-05-13T19:10:59,640 creating build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,642 copying multiqc/utils/material_icons/LICENSE -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,644 copying multiqc/utils/material_icons/manifest.json -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,646 copying multiqc/utils/material_icons/mdi-alert-circle-outline.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,649 copying multiqc/utils/material_icons/mdi-alert-circle.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,651 copying multiqc/utils/material_icons/mdi-alert.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,654 copying multiqc/utils/material_icons/mdi-arrow-left.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,656 copying multiqc/utils/material_icons/mdi-arrow-right.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,658 copying multiqc/utils/material_icons/mdi-book-open-page-variant.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,660 copying multiqc/utils/material_icons/mdi-bookmark.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,662 copying multiqc/utils/material_icons/mdi-cancel.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,665 copying multiqc/utils/material_icons/mdi-chart-scatter-plot.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,667 copying multiqc/utils/material_icons/mdi-check-circle.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,669 copying multiqc/utils/material_icons/mdi-check.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,672 copying multiqc/utils/material_icons/mdi-checkbox-blank-outline.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,674 copying multiqc/utils/material_icons/mdi-checkbox-marked.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,676 copying multiqc/utils/material_icons/mdi-chevron-down.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,678 copying multiqc/utils/material_icons/mdi-chevron-left.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,680 copying multiqc/utils/material_icons/mdi-chevron-right.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,683 copying multiqc/utils/material_icons/mdi-chevron-up.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,685 copying multiqc/utils/material_icons/mdi-circle-half-full.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,687 copying multiqc/utils/material_icons/mdi-clock.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,689 copying multiqc/utils/material_icons/mdi-close.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,692 copying multiqc/utils/material_icons/mdi-cog.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,694 copying multiqc/utils/material_icons/mdi-content-copy.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,696 copying multiqc/utils/material_icons/mdi-content-save-outline.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,699 copying multiqc/utils/material_icons/mdi-content-save.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,701 copying multiqc/utils/material_icons/mdi-delete.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,703 copying multiqc/utils/material_icons/mdi-download.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,705 copying multiqc/utils/material_icons/mdi-equalizer.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,707 copying multiqc/utils/material_icons/mdi-eye-off.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,709 copying multiqc/utils/material_icons/mdi-eye.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,712 copying multiqc/utils/material_icons/mdi-file-document.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,714 copying multiqc/utils/material_icons/mdi-file.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,716 copying multiqc/utils/material_icons/mdi-filter.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,718 copying multiqc/utils/material_icons/mdi-folder-open.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,721 copying multiqc/utils/material_icons/mdi-folder.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,723 copying multiqc/utils/material_icons/mdi-format-align-left.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,725 copying multiqc/utils/material_icons/mdi-format-bold.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,727 copying multiqc/utils/material_icons/mdi-format-text.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,729 copying multiqc/utils/material_icons/mdi-github.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,732 copying multiqc/utils/material_icons/mdi-hand-pointing-up.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,734 copying multiqc/utils/material_icons/mdi-heart.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,737 copying multiqc/utils/material_icons/mdi-help-circle.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,739 copying multiqc/utils/material_icons/mdi-home.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,741 copying multiqc/utils/material_icons/mdi-image.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,744 copying multiqc/utils/material_icons/mdi-information.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,748 copying multiqc/utils/material_icons/mdi-link.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,750 copying multiqc/utils/material_icons/mdi-magnify-minus.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,753 copying multiqc/utils/material_icons/mdi-magnify-plus.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,755 copying multiqc/utils/material_icons/mdi-magnify.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,757 copying multiqc/utils/material_icons/mdi-menu.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,759 copying multiqc/utils/material_icons/mdi-minus.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,762 copying multiqc/utils/material_icons/mdi-pencil.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,764 copying multiqc/utils/material_icons/mdi-pin.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,766 copying multiqc/utils/material_icons/mdi-plus.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,768 copying multiqc/utils/material_icons/mdi-printer.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,771 copying multiqc/utils/material_icons/mdi-qrcode.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,773 copying multiqc/utils/material_icons/mdi-radiobox-blank.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,775 copying multiqc/utils/material_icons/mdi-radiobox-marked.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,777 copying multiqc/utils/material_icons/mdi-refresh.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,780 copying multiqc/utils/material_icons/mdi-school.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,782 copying multiqc/utils/material_icons/mdi-share.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,784 copying multiqc/utils/material_icons/mdi-sort.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,787 copying multiqc/utils/material_icons/mdi-star.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,789 copying multiqc/utils/material_icons/mdi-table.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,791 copying multiqc/utils/material_icons/mdi-thumb-down.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,794 copying multiqc/utils/material_icons/mdi-thumb-up.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,797 copying multiqc/utils/material_icons/mdi-view-column.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,799 copying multiqc/utils/material_icons/mdi-view-dashboard.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,802 copying multiqc/utils/material_icons/mdi-violin.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,804 copying multiqc/utils/material_icons/mdi-warning.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,806 copying multiqc/utils/material_icons/mdi-weather-night.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,809 copying multiqc/utils/material_icons/mdi-weather-sunny.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,811 copying multiqc/utils/material_icons/mdi-youtube.svg -> build/lib/multiqc/utils/material_icons 2026-05-13T19:10:59,824 installing to build/bdist.linux-armv7l/wheel 2026-05-13T19:10:59,825 running install 2026-05-13T19:10:59,848 running install_lib 2026-05-13T19:10:59,853 creating build/bdist.linux-armv7l/wheel 2026-05-13T19:10:59,855 creating build/bdist.linux-armv7l/wheel/multiqc 2026-05-13T19:10:59,856 copying build/lib/multiqc/base_module.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:10:59,860 copying build/lib/multiqc/validation.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:10:59,867 creating build/bdist.linux-armv7l/wheel/multiqc/modules 2026-05-13T19:10:59,869 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2026-05-13T19:10:59,870 copying build/lib/multiqc/modules/biobambam2/biobambam2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobambam2 2026-05-13T19:10:59,873 copying build/lib/multiqc/modules/biobambam2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobambam2 2026-05-13T19:10:59,877 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2026-05-13T19:10:59,878 copying build/lib/multiqc/modules/hicup/hicup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicup 2026-05-13T19:10:59,881 copying build/lib/multiqc/modules/hicup/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicup 2026-05-13T19:10:59,883 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sylphtax 2026-05-13T19:10:59,884 copying build/lib/multiqc/modules/sylphtax/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sylphtax 2026-05-13T19:10:59,886 copying build/lib/multiqc/modules/sylphtax/sylphtax.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sylphtax 2026-05-13T19:10:59,889 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2026-05-13T19:10:59,890 copying build/lib/multiqc/modules/kaiju/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kaiju 2026-05-13T19:10:59,892 copying build/lib/multiqc/modules/kaiju/kaiju.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kaiju 2026-05-13T19:10:59,895 creating build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2026-05-13T19:10:59,896 copying build/lib/multiqc/modules/malt/malt.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/malt 2026-05-13T19:10:59,899 copying build/lib/multiqc/modules/malt/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/malt 2026-05-13T19:10:59,901 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pairtools 2026-05-13T19:10:59,902 copying build/lib/multiqc/modules/pairtools/pairtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2026-05-13T19:10:59,905 copying build/lib/multiqc/modules/pairtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2026-05-13T19:10:59,906 copying build/lib/multiqc/modules/pairtools/params.yml -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2026-05-13T19:10:59,909 copying build/lib/multiqc/modules/pairtools/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2026-05-13T19:10:59,912 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ngsbits 2026-05-13T19:10:59,913 copying build/lib/multiqc/modules/ngsbits/samplegender.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-05-13T19:10:59,915 copying build/lib/multiqc/modules/ngsbits/readqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-05-13T19:10:59,920 copying build/lib/multiqc/modules/ngsbits/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-05-13T19:10:59,924 copying build/lib/multiqc/modules/ngsbits/mappingqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-05-13T19:10:59,929 copying build/lib/multiqc/modules/ngsbits/ngsbits.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-05-13T19:10:59,931 copying build/lib/multiqc/modules/ngsbits/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-05-13T19:10:59,933 creating build/bdist.linux-armv7l/wheel/multiqc/modules/haplocheck 2026-05-13T19:10:59,934 copying build/lib/multiqc/modules/haplocheck/haplocheck.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/haplocheck 2026-05-13T19:10:59,936 copying build/lib/multiqc/modules/haplocheck/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/haplocheck 2026-05-13T19:10:59,939 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2026-05-13T19:10:59,940 copying build/lib/multiqc/modules/xenome/xenome.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenome 2026-05-13T19:10:59,943 copying build/lib/multiqc/modules/xenome/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenome 2026-05-13T19:10:59,946 creating build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2026-05-13T19:10:59,947 copying build/lib/multiqc/modules/varscan2/varscan2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/varscan2 2026-05-13T19:10:59,950 copying build/lib/multiqc/modules/varscan2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/varscan2 2026-05-13T19:10:59,952 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2026-05-13T19:10:59,954 copying build/lib/multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sexdeterrmine 2026-05-13T19:10:59,958 copying build/lib/multiqc/modules/sexdeterrmine/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sexdeterrmine 2026-05-13T19:10:59,962 creating build/bdist.linux-armv7l/wheel/multiqc/modules/methurator 2026-05-13T19:10:59,964 copying build/lib/multiqc/modules/methurator/methurator.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/methurator 2026-05-13T19:10:59,969 copying build/lib/multiqc/modules/methurator/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/methurator 2026-05-13T19:10:59,973 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2026-05-13T19:10:59,974 copying build/lib/multiqc/modules/ngsderive/ngsderive.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsderive 2026-05-13T19:10:59,978 copying build/lib/multiqc/modules/ngsderive/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsderive 2026-05-13T19:10:59,980 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2026-05-13T19:10:59,982 copying build/lib/multiqc/modules/rockhopper/rockhopper.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rockhopper 2026-05-13T19:10:59,984 copying build/lib/multiqc/modules/rockhopper/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rockhopper 2026-05-13T19:10:59,987 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gtdbtk 2026-05-13T19:10:59,988 copying build/lib/multiqc/modules/gtdbtk/gtdbtk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gtdbtk 2026-05-13T19:10:59,991 copying build/lib/multiqc/modules/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gtdbtk 2026-05-13T19:10:59,994 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkm 2026-05-13T19:10:59,995 copying build/lib/multiqc/modules/checkm/checkm.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm 2026-05-13T19:10:59,998 copying build/lib/multiqc/modules/checkm/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm 2026-05-13T19:11:00,001 creating build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2026-05-13T19:11:00,003 copying build/lib/multiqc/modules/eigenstratdatabasetools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/eigenstratdatabasetools 2026-05-13T19:11:00,005 copying build/lib/multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/eigenstratdatabasetools 2026-05-13T19:11:00,008 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2026-05-13T19:11:00,009 copying build/lib/multiqc/modules/bamdst/bamdst.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamdst 2026-05-13T19:11:00,013 copying build/lib/multiqc/modules/bamdst/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamdst 2026-05-13T19:11:00,016 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2026-05-13T19:11:00,017 copying build/lib/multiqc/modules/bustools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bustools 2026-05-13T19:11:00,019 copying build/lib/multiqc/modules/bustools/bustools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bustools 2026-05-13T19:11:00,023 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2026-05-13T19:11:00,024 copying build/lib/multiqc/modules/sourmash/compare.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2026-05-13T19:11:00,026 copying build/lib/multiqc/modules/sourmash/gather.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2026-05-13T19:11:00,029 copying build/lib/multiqc/modules/sourmash/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2026-05-13T19:11:00,031 copying build/lib/multiqc/modules/sourmash/sourmash.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2026-05-13T19:11:00,034 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2026-05-13T19:11:00,035 copying build/lib/multiqc/modules/seqyclean/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqyclean 2026-05-13T19:11:00,037 copying build/lib/multiqc/modules/seqyclean/seqyclean.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqyclean 2026-05-13T19:11:00,042 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cells2stats 2026-05-13T19:11:00,043 copying build/lib/multiqc/modules/cells2stats/queries.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-05-13T19:11:00,046 copying build/lib/multiqc/modules/cells2stats/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-05-13T19:11:00,048 copying build/lib/multiqc/modules/cells2stats/cells2stats_bar_plots.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-05-13T19:11:00,052 copying build/lib/multiqc/modules/cells2stats/cells2stats_tables.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-05-13T19:11:00,056 copying build/lib/multiqc/modules/cells2stats/cells2stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-05-13T19:11:00,061 copying build/lib/multiqc/modules/cells2stats/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-05-13T19:11:00,068 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2026-05-13T19:11:00,071 copying build/lib/multiqc/modules/bclconvert/bclconvert.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bclconvert 2026-05-13T19:11:00,120 copying build/lib/multiqc/modules/bclconvert/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bclconvert 2026-05-13T19:11:00,124 creating build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2026-05-13T19:11:00,125 copying build/lib/multiqc/modules/busco/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/busco 2026-05-13T19:11:00,128 copying build/lib/multiqc/modules/busco/busco.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/busco 2026-05-13T19:11:00,131 creating build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2026-05-13T19:11:00,133 copying build/lib/multiqc/modules/humid/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-05-13T19:11:00,136 copying build/lib/multiqc/modules/humid/counts.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-05-13T19:11:00,138 copying build/lib/multiqc/modules/humid/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-05-13T19:11:00,140 copying build/lib/multiqc/modules/humid/humid.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-05-13T19:11:00,142 copying build/lib/multiqc/modules/humid/neighbours.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-05-13T19:11:00,144 copying build/lib/multiqc/modules/humid/clusters.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-05-13T19:11:00,147 creating build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2026-05-13T19:11:00,149 copying build/lib/multiqc/modules/filtlong/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/filtlong 2026-05-13T19:11:00,151 copying build/lib/multiqc/modules/filtlong/filtlong.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/filtlong 2026-05-13T19:11:00,155 creating build/bdist.linux-armv7l/wheel/multiqc/modules/star 2026-05-13T19:11:00,156 copying build/lib/multiqc/modules/star/star.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/star 2026-05-13T19:11:00,161 copying build/lib/multiqc/modules/star/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/star 2026-05-13T19:11:00,167 creating build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2026-05-13T19:11:00,170 copying build/lib/multiqc/modules/minionqc/minionqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/minionqc 2026-05-13T19:11:00,176 copying build/lib/multiqc/modules/minionqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/minionqc 2026-05-13T19:11:00,182 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2026-05-13T19:11:00,183 copying build/lib/multiqc/modules/gffcompare/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gffcompare 2026-05-13T19:11:00,184 copying build/lib/multiqc/modules/gffcompare/gffcompare.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gffcompare 2026-05-13T19:11:00,187 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2026-05-13T19:11:00,188 copying build/lib/multiqc/modules/snpsplit/snpsplit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpsplit 2026-05-13T19:11:00,191 copying build/lib/multiqc/modules/snpsplit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpsplit 2026-05-13T19:11:00,193 creating build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2026-05-13T19:11:00,194 copying build/lib/multiqc/modules/librarian/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/librarian 2026-05-13T19:11:00,196 copying build/lib/multiqc/modules/librarian/librarian.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/librarian 2026-05-13T19:11:00,199 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ganon 2026-05-13T19:11:00,200 copying build/lib/multiqc/modules/ganon/ganon.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ganon 2026-05-13T19:11:00,203 copying build/lib/multiqc/modules/ganon/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ganon 2026-05-13T19:11:00,205 creating build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2026-05-13T19:11:00,206 copying build/lib/multiqc/modules/purple/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/purple 2026-05-13T19:11:00,209 copying build/lib/multiqc/modules/purple/purple.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/purple 2026-05-13T19:11:00,212 creating build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2026-05-13T19:11:00,213 copying build/lib/multiqc/modules/longranger/longranger.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/longranger 2026-05-13T19:11:00,216 copying build/lib/multiqc/modules/longranger/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/longranger 2026-05-13T19:11:00,219 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2026-05-13T19:11:00,220 copying build/lib/multiqc/modules/kallisto/kallisto.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kallisto 2026-05-13T19:11:00,222 copying build/lib/multiqc/modules/kallisto/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kallisto 2026-05-13T19:11:00,225 creating build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2026-05-13T19:11:00,226 copying build/lib/multiqc/modules/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/diamond 2026-05-13T19:11:00,228 copying build/lib/multiqc/modules/diamond/diamond.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/diamond 2026-05-13T19:11:00,231 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2026-05-13T19:11:00,232 copying build/lib/multiqc/modules/sickle/sickle.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sickle 2026-05-13T19:11:00,234 copying build/lib/multiqc/modules/sickle/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sickle 2026-05-13T19:11:00,236 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2026-05-13T19:11:00,237 copying build/lib/multiqc/modules/fastq_screen/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastq_screen 2026-05-13T19:11:00,239 copying build/lib/multiqc/modules/fastq_screen/fastq_screen.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastq_screen 2026-05-13T19:11:00,242 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2026-05-13T19:11:00,243 copying build/lib/multiqc/modules/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jcvi 2026-05-13T19:11:00,246 copying build/lib/multiqc/modules/jcvi/jcvi.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jcvi 2026-05-13T19:11:00,250 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2026-05-13T19:11:00,252 copying build/lib/multiqc/modules/ivar/ivar.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ivar 2026-05-13T19:11:00,257 copying build/lib/multiqc/modules/ivar/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ivar 2026-05-13T19:11:00,263 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2026-05-13T19:11:00,264 copying build/lib/multiqc/modules/pbmarkdup/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pbmarkdup 2026-05-13T19:11:00,268 copying build/lib/multiqc/modules/pbmarkdup/pbmarkdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pbmarkdup 2026-05-13T19:11:00,272 creating build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2026-05-13T19:11:00,274 copying build/lib/multiqc/modules/slamdunk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/slamdunk 2026-05-13T19:11:00,278 copying build/lib/multiqc/modules/slamdunk/slamdunk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/slamdunk 2026-05-13T19:11:00,287 creating build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2026-05-13T19:11:00,290 copying build/lib/multiqc/modules/happy/happy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/happy 2026-05-13T19:11:00,299 copying build/lib/multiqc/modules/happy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/happy 2026-05-13T19:11:00,308 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2026-05-13T19:11:00,312 copying build/lib/multiqc/modules/dedup/dedup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dedup 2026-05-13T19:11:00,391 copying build/lib/multiqc/modules/dedup/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dedup 2026-05-13T19:11:00,394 creating build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2026-05-13T19:11:00,396 copying build/lib/multiqc/modules/whatshap/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/whatshap 2026-05-13T19:11:00,399 copying build/lib/multiqc/modules/whatshap/whatshap.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/whatshap 2026-05-13T19:11:00,404 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sompy 2026-05-13T19:11:00,406 copying build/lib/multiqc/modules/sompy/sompy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sompy 2026-05-13T19:11:00,410 copying build/lib/multiqc/modules/sompy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sompy 2026-05-13T19:11:00,413 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2026-05-13T19:11:00,415 copying build/lib/multiqc/modules/bowtie2/bowtie2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie2 2026-05-13T19:11:00,419 copying build/lib/multiqc/modules/bowtie2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie2 2026-05-13T19:11:00,423 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2026-05-13T19:11:00,424 copying build/lib/multiqc/modules/bbduk/bbduk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbduk 2026-05-13T19:11:00,429 copying build/lib/multiqc/modules/bbduk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbduk 2026-05-13T19:11:00,432 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2026-05-13T19:11:00,434 copying build/lib/multiqc/modules/vcftools/tstv_summary.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-05-13T19:11:00,437 copying build/lib/multiqc/modules/vcftools/relatedness2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-05-13T19:11:00,440 copying build/lib/multiqc/modules/vcftools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-05-13T19:11:00,443 copying build/lib/multiqc/modules/vcftools/tstv_by_count.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-05-13T19:11:00,446 copying build/lib/multiqc/modules/vcftools/tstv_by_qual.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-05-13T19:11:00,449 copying build/lib/multiqc/modules/vcftools/vcftools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-05-13T19:11:00,453 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2026-05-13T19:11:00,455 copying build/lib/multiqc/modules/seqwho/seqwho.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqwho 2026-05-13T19:11:00,458 copying build/lib/multiqc/modules/seqwho/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqwho 2026-05-13T19:11:00,462 creating build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2026-05-13T19:11:00,463 copying build/lib/multiqc/modules/conpair/conpair.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/conpair 2026-05-13T19:11:00,466 copying build/lib/multiqc/modules/conpair/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/conpair 2026-05-13T19:11:00,469 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkatlas 2026-05-13T19:11:00,471 copying build/lib/multiqc/modules/checkatlas/checkatlas.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkatlas 2026-05-13T19:11:00,474 copying build/lib/multiqc/modules/checkatlas/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkatlas 2026-05-13T19:11:00,478 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hifi_trimmer 2026-05-13T19:11:00,479 copying build/lib/multiqc/modules/hifi_trimmer/hifi_trimmer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hifi_trimmer 2026-05-13T19:11:00,483 copying build/lib/multiqc/modules/hifi_trimmer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hifi_trimmer 2026-05-13T19:11:00,486 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2026-05-13T19:11:00,487 copying build/lib/multiqc/modules/sambamba/sambamba.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sambamba 2026-05-13T19:11:00,490 copying build/lib/multiqc/modules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sambamba 2026-05-13T19:11:00,493 copying build/lib/multiqc/modules/sambamba/markdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sambamba 2026-05-13T19:11:00,496 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2026-05-13T19:11:00,497 copying build/lib/multiqc/modules/fgbio/error_rate_by_read_position.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2026-05-13T19:11:00,501 copying build/lib/multiqc/modules/fgbio/group_reads_by_umi.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2026-05-13T19:11:00,503 copying build/lib/multiqc/modules/fgbio/fgbio.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2026-05-13T19:11:00,505 copying build/lib/multiqc/modules/fgbio/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2026-05-13T19:11:00,508 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2026-05-13T19:11:00,510 copying build/lib/multiqc/modules/prokka/prokka.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prokka 2026-05-13T19:11:00,513 copying build/lib/multiqc/modules/prokka/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prokka 2026-05-13T19:11:00,516 creating build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2026-05-13T19:11:00,517 copying build/lib/multiqc/modules/tophat/tophat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/tophat 2026-05-13T19:11:00,521 copying build/lib/multiqc/modules/tophat/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/tophat 2026-05-13T19:11:00,524 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicstuff 2026-05-13T19:11:00,525 copying build/lib/multiqc/modules/hicstuff/hicstuff.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicstuff 2026-05-13T19:11:00,528 copying build/lib/multiqc/modules/hicstuff/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicstuff 2026-05-13T19:11:00,532 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2026-05-13T19:11:00,533 copying build/lib/multiqc/modules/rna_seqc/rna_seqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rna_seqc 2026-05-13T19:11:00,537 copying build/lib/multiqc/modules/rna_seqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rna_seqc 2026-05-13T19:11:00,540 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2026-05-13T19:11:00,541 copying build/lib/multiqc/modules/hifiasm/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hifiasm 2026-05-13T19:11:00,544 copying build/lib/multiqc/modules/hifiasm/hifiasm.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hifiasm 2026-05-13T19:11:00,547 creating build/bdist.linux-armv7l/wheel/multiqc/modules/riker 2026-05-13T19:11:00,549 copying build/lib/multiqc/modules/riker/basic.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker 2026-05-13T19:11:00,552 copying build/lib/multiqc/modules/riker/gcbias.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker 2026-05-13T19:11:00,556 copying build/lib/multiqc/modules/riker/util.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker 2026-05-13T19:11:00,559 copying build/lib/multiqc/modules/riker/alignment.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker 2026-05-13T19:11:00,562 copying build/lib/multiqc/modules/riker/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker 2026-05-13T19:11:00,565 creating build/bdist.linux-armv7l/wheel/multiqc/modules/riker/tests 2026-05-13T19:11:00,566 copying build/lib/multiqc/modules/riker/tests/test_riker.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker/tests 2026-05-13T19:11:00,569 copying build/lib/multiqc/modules/riker/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker/tests 2026-05-13T19:11:00,571 copying build/lib/multiqc/modules/riker/riker.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker 2026-05-13T19:11:00,573 copying build/lib/multiqc/modules/riker/hybcap.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker 2026-05-13T19:11:00,575 copying build/lib/multiqc/modules/riker/isize.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker 2026-05-13T19:11:00,578 copying build/lib/multiqc/modules/riker/wgs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/riker 2026-05-13T19:11:00,581 creating build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2026-05-13T19:11:00,583 copying build/lib/multiqc/modules/quast/quast.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/quast 2026-05-13T19:11:00,585 copying build/lib/multiqc/modules/quast/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/quast 2026-05-13T19:11:00,588 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2026-05-13T19:11:00,589 copying build/lib/multiqc/modules/sequali/sequali.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sequali 2026-05-13T19:11:00,592 copying build/lib/multiqc/modules/sequali/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sequali 2026-05-13T19:11:00,594 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2026-05-13T19:11:00,595 copying build/lib/multiqc/modules/nonpareil/nonpareil.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nonpareil 2026-05-13T19:11:00,599 copying build/lib/multiqc/modules/nonpareil/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nonpareil 2026-05-13T19:11:00,601 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2026-05-13T19:11:00,602 copying build/lib/multiqc/modules/bakta/bakta.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bakta 2026-05-13T19:11:00,605 copying build/lib/multiqc/modules/bakta/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bakta 2026-05-13T19:11:00,607 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2026-05-13T19:11:00,609 copying build/lib/multiqc/modules/flash/flash.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flash 2026-05-13T19:11:00,611 copying build/lib/multiqc/modules/flash/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flash 2026-05-13T19:11:00,614 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq 2026-05-13T19:11:00,615 copying build/lib/multiqc/modules/bases2fastq/plot_runs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2026-05-13T19:11:00,618 copying build/lib/multiqc/modules/bases2fastq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2026-05-13T19:11:00,620 copying build/lib/multiqc/modules/bases2fastq/plot_samples.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2026-05-13T19:11:00,623 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq/tests 2026-05-13T19:11:00,625 copying build/lib/multiqc/modules/bases2fastq/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests 2026-05-13T19:11:00,627 copying build/lib/multiqc/modules/bases2fastq/tests/test_bases2fastq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests 2026-05-13T19:11:00,630 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:11:00,631 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/run_manifest_with_samples.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:11:00,633 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/run_runstats_with_occurrences.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:11:00,636 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject 2026-05-13T19:11:00,637 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/RunManifest.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject 2026-05-13T19:11:00,640 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/RunStats.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject 2026-05-13T19:11:00,642 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/Samples 2026-05-13T19:11:00,644 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/Samples/DefaultProject 2026-05-13T19:11:00,646 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/Samples/DefaultProject/DefaultProject_RunStats.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/Samples/DefaultProject 2026-05-13T19:11:00,648 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/run_runstats.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:11:00,650 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/run_runstats_with_unassigned.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:11:00,652 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/run_manifest.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:11:00,655 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProject 2026-05-13T19:11:00,656 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProject/RunStats.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProject 2026-05-13T19:11:00,658 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectLowPolonies 2026-05-13T19:11:00,659 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectLowPolonies/RunStats.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectLowPolonies 2026-05-13T19:11:00,661 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/project_runstats.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:11:00,664 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectWithLanes 2026-05-13T19:11:00,665 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectWithLanes/RunStats.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectWithLanes 2026-05-13T19:11:00,667 copying build/lib/multiqc/modules/bases2fastq/tests/fixtures/run_runstats_low_polonies.json -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq/tests/fixtures 2026-05-13T19:11:00,669 copying build/lib/multiqc/modules/bases2fastq/bases2fastq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2026-05-13T19:11:00,673 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2026-05-13T19:11:00,675 copying build/lib/multiqc/modules/sargasso/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sargasso 2026-05-13T19:11:00,677 copying build/lib/multiqc/modules/sargasso/sargasso.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sargasso 2026-05-13T19:11:00,679 creating build/bdist.linux-armv7l/wheel/multiqc/modules/glimpse 2026-05-13T19:11:00,681 copying build/lib/multiqc/modules/glimpse/err_spl.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2026-05-13T19:11:00,683 copying build/lib/multiqc/modules/glimpse/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2026-05-13T19:11:00,685 copying build/lib/multiqc/modules/glimpse/glimpse.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2026-05-13T19:11:00,687 copying build/lib/multiqc/modules/glimpse/err_grp.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2026-05-13T19:11:00,691 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2026-05-13T19:11:00,692 copying build/lib/multiqc/modules/clusterflow/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clusterflow 2026-05-13T19:11:00,694 copying build/lib/multiqc/modules/clusterflow/clusterflow.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clusterflow 2026-05-13T19:11:00,698 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2026-05-13T19:11:00,700 copying build/lib/multiqc/modules/biobloomtools/biobloomtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobloomtools 2026-05-13T19:11:00,702 copying build/lib/multiqc/modules/biobloomtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobloomtools 2026-05-13T19:11:00,705 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2026-05-13T19:11:00,706 copying build/lib/multiqc/modules/hisat2/hisat2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hisat2 2026-05-13T19:11:00,709 copying build/lib/multiqc/modules/hisat2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hisat2 2026-05-13T19:11:00,711 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2026-05-13T19:11:00,712 copying build/lib/multiqc/modules/mosdepth/mosdepth.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosdepth 2026-05-13T19:11:00,716 copying build/lib/multiqc/modules/mosdepth/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosdepth 2026-05-13T19:11:00,718 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth/tests 2026-05-13T19:11:00,719 copying build/lib/multiqc/modules/mosdepth/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosdepth/tests 2026-05-13T19:11:00,721 copying build/lib/multiqc/modules/mosdepth/tests/test_gen_stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosdepth/tests 2026-05-13T19:11:00,724 creating build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2026-05-13T19:11:00,725 copying build/lib/multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/goleft_indexcov 2026-05-13T19:11:00,728 copying build/lib/multiqc/modules/goleft_indexcov/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/goleft_indexcov 2026-05-13T19:11:00,731 creating build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2026-05-13T19:11:00,732 copying build/lib/multiqc/modules/macs2/macs2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/macs2 2026-05-13T19:11:00,735 copying build/lib/multiqc/modules/macs2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/macs2 2026-05-13T19:11:00,737 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2026-05-13T19:11:00,738 copying build/lib/multiqc/modules/pangolin/pangolin.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pangolin 2026-05-13T19:11:00,741 copying build/lib/multiqc/modules/pangolin/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pangolin 2026-05-13T19:11:00,743 creating build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2026-05-13T19:11:00,744 copying build/lib/multiqc/modules/lima/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/lima 2026-05-13T19:11:00,746 copying build/lib/multiqc/modules/lima/lima.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/lima 2026-05-13T19:11:00,749 creating build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2026-05-13T19:11:00,751 copying build/lib/multiqc/modules/methylqa/methylqa.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/methylqa 2026-05-13T19:11:00,753 copying build/lib/multiqc/modules/methylqa/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/methylqa 2026-05-13T19:11:00,756 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2026-05-13T19:11:00,757 copying build/lib/multiqc/modules/bcl2fastq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcl2fastq 2026-05-13T19:11:00,759 copying build/lib/multiqc/modules/bcl2fastq/bcl2fastq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcl2fastq 2026-05-13T19:11:00,762 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2026-05-13T19:11:00,763 copying build/lib/multiqc/modules/flexbar/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flexbar 2026-05-13T19:11:00,765 copying build/lib/multiqc/modules/flexbar/flexbar.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flexbar 2026-05-13T19:11:00,768 creating build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2026-05-13T19:11:00,769 copying build/lib/multiqc/modules/theta2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/theta2 2026-05-13T19:11:00,771 copying build/lib/multiqc/modules/theta2/theta2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/theta2 2026-05-13T19:11:00,774 creating build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2026-05-13T19:11:00,775 copying build/lib/multiqc/modules/metaphlan/metaphlan.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/metaphlan 2026-05-13T19:11:00,779 copying build/lib/multiqc/modules/metaphlan/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/metaphlan 2026-05-13T19:11:00,782 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2026-05-13T19:11:00,783 copying build/lib/multiqc/modules/fastp/fastp.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastp 2026-05-13T19:11:00,786 copying build/lib/multiqc/modules/fastp/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastp 2026-05-13T19:11:00,789 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2026-05-13T19:11:00,790 copying build/lib/multiqc/modules/bismark/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bismark 2026-05-13T19:11:00,792 copying build/lib/multiqc/modules/bismark/bismark.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bismark 2026-05-13T19:11:00,795 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2026-05-13T19:11:00,796 copying build/lib/multiqc/modules/mapdamage/mapdamage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mapdamage 2026-05-13T19:11:00,799 copying build/lib/multiqc/modules/mapdamage/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mapdamage 2026-05-13T19:11:00,802 creating build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2026-05-13T19:11:00,803 copying build/lib/multiqc/modules/freyja/freyja.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/freyja 2026-05-13T19:11:00,805 copying build/lib/multiqc/modules/freyja/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/freyja 2026-05-13T19:11:00,808 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2026-05-13T19:11:00,809 copying build/lib/multiqc/modules/bamtools/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamtools 2026-05-13T19:11:00,811 copying build/lib/multiqc/modules/bamtools/bamtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamtools 2026-05-13T19:11:00,813 copying build/lib/multiqc/modules/bamtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamtools 2026-05-13T19:11:00,816 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2026-05-13T19:11:00,817 copying build/lib/multiqc/modules/samtools/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-05-13T19:11:00,819 copying build/lib/multiqc/modules/samtools/ampliconclip.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-05-13T19:11:00,822 copying build/lib/multiqc/modules/samtools/idxstats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-05-13T19:11:00,824 copying build/lib/multiqc/modules/samtools/coverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-05-13T19:11:00,826 copying build/lib/multiqc/modules/samtools/samtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-05-13T19:11:00,828 copying build/lib/multiqc/modules/samtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-05-13T19:11:00,830 copying build/lib/multiqc/modules/samtools/rmdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-05-13T19:11:00,833 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools/tests 2026-05-13T19:11:00,834 copying build/lib/multiqc/modules/samtools/tests/test_flagstat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools/tests 2026-05-13T19:11:00,837 copying build/lib/multiqc/modules/samtools/tests/test_coverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools/tests 2026-05-13T19:11:00,839 copying build/lib/multiqc/modules/samtools/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools/tests 2026-05-13T19:11:00,840 copying build/lib/multiqc/modules/samtools/flagstat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-05-13T19:11:00,843 copying build/lib/multiqc/modules/samtools/markdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-05-13T19:11:00,845 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2026-05-13T19:11:00,846 copying build/lib/multiqc/modules/gopeaks/gopeaks.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gopeaks 2026-05-13T19:11:00,849 copying build/lib/multiqc/modules/gopeaks/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gopeaks 2026-05-13T19:11:00,851 creating build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2026-05-13T19:11:00,852 copying build/lib/multiqc/modules/salmon/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/salmon 2026-05-13T19:11:00,854 copying build/lib/multiqc/modules/salmon/salmon.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/salmon 2026-05-13T19:11:00,857 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger_arc 2026-05-13T19:11:00,858 copying build/lib/multiqc/modules/cellranger_arc/cellranger_arc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc 2026-05-13T19:11:00,860 copying build/lib/multiqc/modules/cellranger_arc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc 2026-05-13T19:11:00,863 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger_arc/tests 2026-05-13T19:11:00,864 copying build/lib/multiqc/modules/cellranger_arc/tests/test_cellranger_arc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc/tests 2026-05-13T19:11:00,866 copying build/lib/multiqc/modules/cellranger_arc/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc/tests 2026-05-13T19:11:00,868 copying build/lib/multiqc/modules/cellranger_arc/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc 2026-05-13T19:11:00,870 creating build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2026-05-13T19:11:00,871 copying build/lib/multiqc/modules/odgi/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/odgi 2026-05-13T19:11:00,873 copying build/lib/multiqc/modules/odgi/odgi.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/odgi 2026-05-13T19:11:00,877 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vg 2026-05-13T19:11:00,878 copying build/lib/multiqc/modules/vg/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vg 2026-05-13T19:11:00,880 copying build/lib/multiqc/modules/vg/vg.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vg 2026-05-13T19:11:00,883 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqe 2026-05-13T19:11:00,884 copying build/lib/multiqc/modules/fastqe/fastqe.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqe 2026-05-13T19:11:00,886 copying build/lib/multiqc/modules/fastqe/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqe 2026-05-13T19:11:00,889 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sincei 2026-05-13T19:11:00,890 copying build/lib/multiqc/modules/sincei/_helpers.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sincei 2026-05-13T19:11:00,892 copying build/lib/multiqc/modules/sincei/scCountQC.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sincei 2026-05-13T19:11:00,894 copying build/lib/multiqc/modules/sincei/scFilterStats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sincei 2026-05-13T19:11:00,896 copying build/lib/multiqc/modules/sincei/sincei.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sincei 2026-05-13T19:11:00,899 copying build/lib/multiqc/modules/sincei/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sincei 2026-05-13T19:11:00,901 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2026-05-13T19:11:00,902 copying build/lib/multiqc/modules/rseqc/junction_annotation.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,905 copying build/lib/multiqc/modules/rseqc/inner_distance.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,907 copying build/lib/multiqc/modules/rseqc/junction_saturation.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,909 copying build/lib/multiqc/modules/rseqc/tin.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,911 copying build/lib/multiqc/modules/rseqc/gene_body_coverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,913 copying build/lib/multiqc/modules/rseqc/read_distribution.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,915 copying build/lib/multiqc/modules/rseqc/read_gc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,917 copying build/lib/multiqc/modules/rseqc/bam_stat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,919 copying build/lib/multiqc/modules/rseqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,921 copying build/lib/multiqc/modules/rseqc/rseqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,923 copying build/lib/multiqc/modules/rseqc/read_duplication.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,924 copying build/lib/multiqc/modules/rseqc/infer_experiment.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-05-13T19:11:00,927 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2026-05-13T19:11:00,928 copying build/lib/multiqc/modules/vep/vep.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vep 2026-05-13T19:11:00,931 copying build/lib/multiqc/modules/vep/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vep 2026-05-13T19:11:00,933 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2026-05-13T19:11:00,934 copying build/lib/multiqc/modules/umitools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools 2026-05-13T19:11:00,938 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umitools/tests 2026-05-13T19:11:00,940 copying build/lib/multiqc/modules/umitools/tests/test_umitools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools/tests 2026-05-13T19:11:00,942 copying build/lib/multiqc/modules/umitools/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools/tests 2026-05-13T19:11:00,944 copying build/lib/multiqc/modules/umitools/umitools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools 2026-05-13T19:11:00,950 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2026-05-13T19:11:00,952 copying build/lib/multiqc/modules/cutadapt/cutadapt.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cutadapt 2026-05-13T19:11:00,955 copying build/lib/multiqc/modules/cutadapt/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cutadapt 2026-05-13T19:11:00,957 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2026-05-13T19:11:00,958 copying build/lib/multiqc/modules/ccs/ccs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs 2026-05-13T19:11:00,961 copying build/lib/multiqc/modules/ccs/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs 2026-05-13T19:11:00,963 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs/tests 2026-05-13T19:11:00,964 copying build/lib/multiqc/modules/ccs/tests/test_ccs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs/tests 2026-05-13T19:11:00,967 copying build/lib/multiqc/modules/ccs/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs/tests 2026-05-13T19:11:00,969 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2026-05-13T19:11:00,970 copying build/lib/multiqc/modules/qc3C/qc3C.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qc3C 2026-05-13T19:11:00,973 copying build/lib/multiqc/modules/qc3C/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qc3C 2026-05-13T19:11:00,975 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2026-05-13T19:11:00,976 copying build/lib/multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prinseqplusplus 2026-05-13T19:11:00,979 copying build/lib/multiqc/modules/prinseqplusplus/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prinseqplusplus 2026-05-13T19:11:00,981 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqkit 2026-05-13T19:11:00,982 copying build/lib/multiqc/modules/seqkit/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit 2026-05-13T19:11:00,984 copying build/lib/multiqc/modules/seqkit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit 2026-05-13T19:11:00,986 copying build/lib/multiqc/modules/seqkit/seqkit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit 2026-05-13T19:11:00,988 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqkit/tests 2026-05-13T19:11:00,989 copying build/lib/multiqc/modules/seqkit/tests/test_stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit/tests 2026-05-13T19:11:00,991 copying build/lib/multiqc/modules/seqkit/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit/tests 2026-05-13T19:11:00,995 creating build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2026-05-13T19:11:00,996 copying build/lib/multiqc/modules/adapterremoval/adapterremoval.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/adapterremoval 2026-05-13T19:11:00,999 copying build/lib/multiqc/modules/adapterremoval/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/adapterremoval 2026-05-13T19:11:01,001 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2026-05-13T19:11:01,002 copying build/lib/multiqc/modules/hostile/hostile.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hostile 2026-05-13T19:11:01,004 copying build/lib/multiqc/modules/hostile/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hostile 2026-05-13T19:11:01,007 creating build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2026-05-13T19:11:01,008 copying build/lib/multiqc/modules/supernova/supernova.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/supernova 2026-05-13T19:11:01,011 copying build/lib/multiqc/modules/supernova/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/supernova 2026-05-13T19:11:01,013 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2026-05-13T19:11:01,014 copying build/lib/multiqc/modules/mirtop/mirtop.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtop 2026-05-13T19:11:01,016 copying build/lib/multiqc/modules/mirtop/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtop 2026-05-13T19:11:01,019 creating build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2026-05-13T19:11:01,020 copying build/lib/multiqc/modules/damageprofiler/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/damageprofiler 2026-05-13T19:11:01,022 copying build/lib/multiqc/modules/damageprofiler/damageprofiler.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/damageprofiler 2026-05-13T19:11:01,025 creating build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2026-05-13T19:11:01,026 copying build/lib/multiqc/modules/isoseq/isoseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/isoseq 2026-05-13T19:11:01,028 copying build/lib/multiqc/modules/isoseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/isoseq 2026-05-13T19:11:01,031 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2026-05-13T19:11:01,032 copying build/lib/multiqc/modules/qualimap/QM_BamQC.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2026-05-13T19:11:01,035 copying build/lib/multiqc/modules/qualimap/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2026-05-13T19:11:01,037 copying build/lib/multiqc/modules/qualimap/QM_RNASeq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2026-05-13T19:11:01,040 copying build/lib/multiqc/modules/qualimap/qualimap.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2026-05-13T19:11:01,042 creating build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2026-05-13T19:11:01,043 copying build/lib/multiqc/modules/disambiguate/disambiguate.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/disambiguate 2026-05-13T19:11:01,045 copying build/lib/multiqc/modules/disambiguate/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/disambiguate 2026-05-13T19:11:01,048 creating build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2026-05-13T19:11:01,049 copying build/lib/multiqc/modules/optitype/optitype.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/optitype 2026-05-13T19:11:01,051 copying build/lib/multiqc/modules/optitype/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/optitype 2026-05-13T19:11:01,054 creating build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2026-05-13T19:11:01,055 copying build/lib/multiqc/modules/skewer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/skewer 2026-05-13T19:11:01,057 copying build/lib/multiqc/modules/skewer/skewer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/skewer 2026-05-13T19:11:01,060 creating build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2026-05-13T19:11:01,061 copying build/lib/multiqc/modules/verifybamid/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/verifybamid 2026-05-13T19:11:01,063 copying build/lib/multiqc/modules/verifybamid/verifybamid.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/verifybamid 2026-05-13T19:11:01,066 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2026-05-13T19:11:01,067 copying build/lib/multiqc/modules/checkqc/checkqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkqc 2026-05-13T19:11:01,070 copying build/lib/multiqc/modules/checkqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkqc 2026-05-13T19:11:01,073 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2026-05-13T19:11:01,074 copying build/lib/multiqc/modules/samblaster/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samblaster 2026-05-13T19:11:01,076 copying build/lib/multiqc/modules/samblaster/samblaster.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samblaster 2026-05-13T19:11:01,078 copying build/lib/multiqc/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules 2026-05-13T19:11:01,081 creating build/bdist.linux-armv7l/wheel/multiqc/modules/telseq 2026-05-13T19:11:01,082 copying build/lib/multiqc/modules/telseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/telseq 2026-05-13T19:11:01,084 copying build/lib/multiqc/modules/telseq/telseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/telseq 2026-05-13T19:11:01,086 creating build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2026-05-13T19:11:01,087 copying build/lib/multiqc/modules/porechop/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/porechop 2026-05-13T19:11:01,089 copying build/lib/multiqc/modules/porechop/porechop.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/porechop 2026-05-13T19:11:01,092 creating build/bdist.linux-armv7l/wheel/multiqc/modules/percolator 2026-05-13T19:11:01,093 copying build/lib/multiqc/modules/percolator/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/percolator 2026-05-13T19:11:01,095 copying build/lib/multiqc/modules/percolator/percolator.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/percolator 2026-05-13T19:11:01,099 creating build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2026-05-13T19:11:01,100 copying build/lib/multiqc/modules/interop/interop.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/interop 2026-05-13T19:11:01,103 copying build/lib/multiqc/modules/interop/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/interop 2026-05-13T19:11:01,105 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2026-05-13T19:11:01,106 copying build/lib/multiqc/modules/kat/kat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kat 2026-05-13T19:11:01,109 copying build/lib/multiqc/modules/kat/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kat 2026-05-13T19:11:01,111 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mgikit 2026-05-13T19:11:01,112 copying build/lib/multiqc/modules/mgikit/mgikit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mgikit 2026-05-13T19:11:01,115 copying build/lib/multiqc/modules/mgikit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mgikit 2026-05-13T19:11:01,117 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2026-05-13T19:11:01,118 copying build/lib/multiqc/modules/nanostat/nanostat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanostat 2026-05-13T19:11:01,121 copying build/lib/multiqc/modules/nanostat/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanostat 2026-05-13T19:11:01,124 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2026-05-13T19:11:01,125 copying build/lib/multiqc/modules/pychopper/pychopper.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pychopper 2026-05-13T19:11:01,127 copying build/lib/multiqc/modules/pychopper/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pychopper 2026-05-13T19:11:01,129 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nanoq 2026-05-13T19:11:01,131 copying build/lib/multiqc/modules/nanoq/nanoq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanoq 2026-05-13T19:11:01,133 copying build/lib/multiqc/modules/nanoq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanoq 2026-05-13T19:11:01,135 creating build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2026-05-13T19:11:01,136 copying build/lib/multiqc/modules/peddy/peddy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/peddy 2026-05-13T19:11:01,139 copying build/lib/multiqc/modules/peddy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/peddy 2026-05-13T19:11:01,141 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xenium 2026-05-13T19:11:01,143 copying build/lib/multiqc/modules/xenium/xenium.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenium 2026-05-13T19:11:01,145 copying build/lib/multiqc/modules/xenium/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenium 2026-05-13T19:11:01,148 creating build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2026-05-13T19:11:01,149 copying build/lib/multiqc/modules/deeptools/plotCoverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,151 copying build/lib/multiqc/modules/deeptools/deeptools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,154 copying build/lib/multiqc/modules/deeptools/plotCorrelation.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,156 copying build/lib/multiqc/modules/deeptools/estimateReadFiltering.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,158 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,161 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,163 copying build/lib/multiqc/modules/deeptools/plotPCA.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,165 copying build/lib/multiqc/modules/deeptools/plotFingerprint.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,167 copying build/lib/multiqc/modules/deeptools/plotEnrichment.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,169 copying build/lib/multiqc/modules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,171 copying build/lib/multiqc/modules/deeptools/plotProfile.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-05-13T19:11:01,174 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2026-05-13T19:11:01,175 copying build/lib/multiqc/modules/bowtie1/bowtie1.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie1 2026-05-13T19:11:01,178 copying build/lib/multiqc/modules/bowtie1/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie1 2026-05-13T19:11:01,182 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2026-05-13T19:11:01,183 copying build/lib/multiqc/modules/gatk/gatk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-05-13T19:11:01,185 copying build/lib/multiqc/modules/gatk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-05-13T19:11:01,187 copying build/lib/multiqc/modules/gatk/varianteval.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-05-13T19:11:01,190 copying build/lib/multiqc/modules/gatk/base_recalibrator.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-05-13T19:11:01,192 copying build/lib/multiqc/modules/gatk/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-05-13T19:11:01,194 copying build/lib/multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-05-13T19:11:01,197 creating build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2026-05-13T19:11:01,198 copying build/lib/multiqc/modules/preseq/preseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/preseq 2026-05-13T19:11:01,201 copying build/lib/multiqc/modules/preseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/preseq 2026-05-13T19:11:01,203 creating build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2026-05-13T19:11:01,205 copying build/lib/multiqc/modules/truvari/truvari.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/truvari 2026-05-13T19:11:01,207 copying build/lib/multiqc/modules/truvari/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/truvari 2026-05-13T19:11:01,210 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqfu 2026-05-13T19:11:01,211 copying build/lib/multiqc/modules/seqfu/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu 2026-05-13T19:11:01,214 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqfu/test 2026-05-13T19:11:01,215 copying build/lib/multiqc/modules/seqfu/test/test_stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu/test 2026-05-13T19:11:01,217 copying build/lib/multiqc/modules/seqfu/seqfu.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu 2026-05-13T19:11:01,219 copying build/lib/multiqc/modules/seqfu/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu 2026-05-13T19:11:01,221 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2026-05-13T19:11:01,222 copying build/lib/multiqc/modules/hops/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hops 2026-05-13T19:11:01,224 copying build/lib/multiqc/modules/hops/hops.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hops 2026-05-13T19:11:01,227 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2026-05-13T19:11:01,228 copying build/lib/multiqc/modules/hicpro/hicpro.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicpro 2026-05-13T19:11:01,231 copying build/lib/multiqc/modules/hicpro/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicpro 2026-05-13T19:11:01,233 creating build/bdist.linux-armv7l/wheel/multiqc/modules/featurecounts 2026-05-13T19:11:01,234 copying build/lib/multiqc/modules/featurecounts/featurecounts.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/featurecounts 2026-05-13T19:11:01,237 copying build/lib/multiqc/modules/featurecounts/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/featurecounts 2026-05-13T19:11:01,239 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2026-05-13T19:11:01,240 copying build/lib/multiqc/modules/biscuit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit 2026-05-13T19:11:01,242 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit/tests 2026-05-13T19:11:01,243 copying build/lib/multiqc/modules/biscuit/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit/tests 2026-05-13T19:11:01,245 copying build/lib/multiqc/modules/biscuit/tests/test_biscuit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit/tests 2026-05-13T19:11:01,247 copying build/lib/multiqc/modules/biscuit/biscuit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit 2026-05-13T19:11:01,250 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ataqv 2026-05-13T19:11:01,251 copying build/lib/multiqc/modules/ataqv/ataqv.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ataqv 2026-05-13T19:11:01,254 copying build/lib/multiqc/modules/ataqv/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ataqv 2026-05-13T19:11:01,256 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ribowaltz 2026-05-13T19:11:01,257 copying build/lib/multiqc/modules/ribowaltz/ribowaltz.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribowaltz 2026-05-13T19:11:01,260 copying build/lib/multiqc/modules/ribowaltz/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribowaltz 2026-05-13T19:11:01,263 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2026-05-13T19:11:01,264 copying build/lib/multiqc/modules/clipandmerge/clipandmerge.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clipandmerge 2026-05-13T19:11:01,266 copying build/lib/multiqc/modules/clipandmerge/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clipandmerge 2026-05-13T19:11:01,268 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2026-05-13T19:11:01,269 copying build/lib/multiqc/modules/cellranger/vdj.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2026-05-13T19:11:01,272 copying build/lib/multiqc/modules/cellranger/cellranger.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2026-05-13T19:11:01,274 copying build/lib/multiqc/modules/cellranger/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2026-05-13T19:11:01,276 copying build/lib/multiqc/modules/cellranger/count.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2026-05-13T19:11:01,279 copying build/lib/multiqc/modules/cellranger/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2026-05-13T19:11:01,281 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umicollapse 2026-05-13T19:11:01,282 copying build/lib/multiqc/modules/umicollapse/umicollapse.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse 2026-05-13T19:11:01,285 copying build/lib/multiqc/modules/umicollapse/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse 2026-05-13T19:11:01,287 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umicollapse/tests 2026-05-13T19:11:01,289 copying build/lib/multiqc/modules/umicollapse/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse/tests 2026-05-13T19:11:01,290 copying build/lib/multiqc/modules/umicollapse/tests/test_umicollapse.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse/tests 2026-05-13T19:11:01,293 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2026-05-13T19:11:01,294 copying build/lib/multiqc/modules/mirtrace/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtrace 2026-05-13T19:11:01,296 copying build/lib/multiqc/modules/mirtrace/mirtrace.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtrace 2026-05-13T19:11:01,300 creating build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2026-05-13T19:11:01,301 copying build/lib/multiqc/modules/trimmomatic/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/trimmomatic 2026-05-13T19:11:01,303 copying build/lib/multiqc/modules/trimmomatic/trimmomatic.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/trimmomatic 2026-05-13T19:11:01,305 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkm2 2026-05-13T19:11:01,306 copying build/lib/multiqc/modules/checkm2/checkm2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm2 2026-05-13T19:11:01,309 copying build/lib/multiqc/modules/checkm2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm2 2026-05-13T19:11:01,311 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2026-05-13T19:11:01,312 copying build/lib/multiqc/modules/bcftools/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcftools 2026-05-13T19:11:01,315 copying build/lib/multiqc/modules/bcftools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcftools 2026-05-13T19:11:01,317 copying build/lib/multiqc/modules/bcftools/bcftools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcftools 2026-05-13T19:11:01,320 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2026-05-13T19:11:01,321 copying build/lib/multiqc/modules/nextclade/nextclade.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nextclade 2026-05-13T19:11:01,323 copying build/lib/multiqc/modules/nextclade/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nextclade 2026-05-13T19:11:01,325 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2026-05-13T19:11:01,326 copying build/lib/multiqc/modules/fastqc/fastqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc 2026-05-13T19:11:01,331 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets 2026-05-13T19:11:01,332 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2026-05-13T19:11:01,333 copying build/lib/multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/assets/css 2026-05-13T19:11:01,336 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2026-05-13T19:11:01,337 copying build/lib/multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/assets/js 2026-05-13T19:11:01,340 copying build/lib/multiqc/modules/fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc 2026-05-13T19:11:01,342 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-05-13T19:11:01,343 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2026-05-13T19:11:01,345 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2026-05-13T19:11:01,347 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2026-05-13T19:11:01,349 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2026-05-13T19:11:01,351 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2026-05-13T19:11:01,352 copying build/lib/multiqc/modules/pycoqc/pycoqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pycoqc 2026-05-13T19:11:01,355 copying build/lib/multiqc/modules/pycoqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pycoqc 2026-05-13T19:11:01,357 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2026-05-13T19:11:01,358 copying build/lib/multiqc/modules/hicexplorer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicexplorer 2026-05-13T19:11:01,360 copying build/lib/multiqc/modules/hicexplorer/hicexplorer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicexplorer 2026-05-13T19:11:01,363 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2026-05-13T19:11:01,364 copying build/lib/multiqc/modules/sortmerna/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sortmerna 2026-05-13T19:11:01,366 copying build/lib/multiqc/modules/sortmerna/sortmerna.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sortmerna 2026-05-13T19:11:01,368 creating build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2026-05-13T19:11:01,369 copying build/lib/multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/multivcfanalyzer 2026-05-13T19:11:01,371 copying build/lib/multiqc/modules/multivcfanalyzer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/multivcfanalyzer 2026-05-13T19:11:01,374 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2026-05-13T19:11:01,375 copying build/lib/multiqc/modules/dragen_fastqc/read_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-05-13T19:11:01,377 copying build/lib/multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-05-13T19:11:01,379 copying build/lib/multiqc/modules/dragen_fastqc/gc_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-05-13T19:11:01,381 copying build/lib/multiqc/modules/dragen_fastqc/base_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-05-13T19:11:01,384 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets 2026-05-13T19:11:01,386 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2026-05-13T19:11:01,387 copying build/lib/multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc/assets/js 2026-05-13T19:11:01,389 copying build/lib/multiqc/modules/dragen_fastqc/util.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-05-13T19:11:01,391 copying build/lib/multiqc/modules/dragen_fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-05-13T19:11:01,393 copying build/lib/multiqc/modules/dragen_fastqc/content_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-05-13T19:11:01,396 creating build/bdist.linux-armv7l/wheel/multiqc/modules/deacon 2026-05-13T19:11:01,397 copying build/lib/multiqc/modules/deacon/deacon.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deacon 2026-05-13T19:11:01,399 copying build/lib/multiqc/modules/deacon/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deacon 2026-05-13T19:11:01,402 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2026-05-13T19:11:01,403 copying build/lib/multiqc/modules/snippy/snippy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snippy 2026-05-13T19:11:01,405 copying build/lib/multiqc/modules/snippy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snippy 2026-05-13T19:11:01,407 creating build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2026-05-13T19:11:01,409 copying build/lib/multiqc/modules/motus/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/motus 2026-05-13T19:11:01,410 copying build/lib/multiqc/modules/motus/motus.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/motus 2026-05-13T19:11:01,413 creating build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2026-05-13T19:11:01,414 copying build/lib/multiqc/modules/phantompeakqualtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/phantompeakqualtools 2026-05-13T19:11:01,416 copying build/lib/multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/phantompeakqualtools 2026-05-13T19:11:01,419 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2026-05-13T19:11:01,420 copying build/lib/multiqc/modules/rsem/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rsem 2026-05-13T19:11:01,422 copying build/lib/multiqc/modules/rsem/rsem.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rsem 2026-05-13T19:11:01,425 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2026-05-13T19:11:01,426 copying build/lib/multiqc/modules/snpeff/snpeff.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpeff 2026-05-13T19:11:01,428 copying build/lib/multiqc/modules/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpeff 2026-05-13T19:11:01,430 creating build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2026-05-13T19:11:01,431 copying build/lib/multiqc/modules/leehom/leehom.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/leehom 2026-05-13T19:11:01,433 copying build/lib/multiqc/modules/leehom/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/leehom 2026-05-13T19:11:01,436 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2026-05-13T19:11:01,437 copying build/lib/multiqc/modules/mtnucratio/mtnucratio.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mtnucratio 2026-05-13T19:11:01,439 copying build/lib/multiqc/modules/mtnucratio/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mtnucratio 2026-05-13T19:11:01,441 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2026-05-13T19:11:01,442 copying build/lib/multiqc/modules/jellyfish/jellyfish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jellyfish 2026-05-13T19:11:01,445 copying build/lib/multiqc/modules/jellyfish/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jellyfish 2026-05-13T19:11:01,447 creating build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2026-05-13T19:11:01,448 copying build/lib/multiqc/modules/afterqc/afterqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/afterqc 2026-05-13T19:11:01,450 copying build/lib/multiqc/modules/afterqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/afterqc 2026-05-13T19:11:01,453 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2026-05-13T19:11:01,454 copying build/lib/multiqc/modules/xengsort/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xengsort 2026-05-13T19:11:01,456 copying build/lib/multiqc/modules/xengsort/xengsort.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xengsort 2026-05-13T19:11:01,458 creating build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2026-05-13T19:11:01,459 copying build/lib/multiqc/modules/somalier/somalier.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/somalier 2026-05-13T19:11:01,462 copying build/lib/multiqc/modules/somalier/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/somalier 2026-05-13T19:11:01,465 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2026-05-13T19:11:01,466 copying build/lib/multiqc/modules/bbmap/plot_indelhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,468 copying build/lib/multiqc/modules/bbmap/plot_qahist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,470 copying build/lib/multiqc/modules/bbmap/plot_bhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,472 copying build/lib/multiqc/modules/bbmap/plot_ihist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,473 copying build/lib/multiqc/modules/bbmap/plot_bqhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,475 copying build/lib/multiqc/modules/bbmap/plot_covhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,477 copying build/lib/multiqc/modules/bbmap/bbmap_filetypes.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,480 copying build/lib/multiqc/modules/bbmap/plot_qchist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,482 copying build/lib/multiqc/modules/bbmap/bbmap.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,484 copying build/lib/multiqc/modules/bbmap/plot_qhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,486 copying build/lib/multiqc/modules/bbmap/plot_idhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,488 copying build/lib/multiqc/modules/bbmap/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,490 copying build/lib/multiqc/modules/bbmap/plot_aqhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,492 copying build/lib/multiqc/modules/bbmap/plot_basic_hist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,494 copying build/lib/multiqc/modules/bbmap/plot_mhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,496 copying build/lib/multiqc/modules/bbmap/plot_bbsplit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-05-13T19:11:01,498 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2026-05-13T19:11:01,499 copying build/lib/multiqc/modules/qorts/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qorts 2026-05-13T19:11:01,501 copying build/lib/multiqc/modules/qorts/qorts.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qorts 2026-05-13T19:11:01,504 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosaicatcher 2026-05-13T19:11:01,505 copying build/lib/multiqc/modules/mosaicatcher/mosaicatcher.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosaicatcher 2026-05-13T19:11:01,507 copying build/lib/multiqc/modules/mosaicatcher/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosaicatcher 2026-05-13T19:11:01,510 creating build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2026-05-13T19:11:01,511 copying build/lib/multiqc/modules/htseq/htseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/htseq 2026-05-13T19:11:01,513 copying build/lib/multiqc/modules/htseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/htseq 2026-05-13T19:11:01,515 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2026-05-13T19:11:01,516 copying build/lib/multiqc/modules/seqera_cli/seqera_cli.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqera_cli 2026-05-13T19:11:01,519 copying build/lib/multiqc/modules/seqera_cli/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqera_cli 2026-05-13T19:11:01,522 creating build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2026-05-13T19:11:01,523 copying build/lib/multiqc/modules/spaceranger/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2026-05-13T19:11:01,525 copying build/lib/multiqc/modules/spaceranger/count.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2026-05-13T19:11:01,528 copying build/lib/multiqc/modules/spaceranger/spaceranger.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2026-05-13T19:11:01,529 copying build/lib/multiqc/modules/spaceranger/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2026-05-13T19:11:01,532 creating build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2026-05-13T19:11:01,533 copying build/lib/multiqc/modules/homer/homer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2026-05-13T19:11:01,535 copying build/lib/multiqc/modules/homer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2026-05-13T19:11:01,537 copying build/lib/multiqc/modules/homer/tagdirectory.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2026-05-13T19:11:01,540 copying build/lib/multiqc/modules/homer/findpeaks.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2026-05-13T19:11:01,542 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2026-05-13T19:11:01,544 copying build/lib/multiqc/modules/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kraken 2026-05-13T19:11:01,546 copying build/lib/multiqc/modules/kraken/kraken.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kraken 2026-05-13T19:11:01,549 creating build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2026-05-13T19:11:01,550 copying build/lib/multiqc/modules/stacks/stacks.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/stacks 2026-05-13T19:11:01,552 copying build/lib/multiqc/modules/stacks/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/stacks 2026-05-13T19:11:01,554 creating build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2026-05-13T19:11:01,555 copying build/lib/multiqc/modules/anglerfish/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/anglerfish 2026-05-13T19:11:01,557 copying build/lib/multiqc/modules/anglerfish/anglerfish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/anglerfish 2026-05-13T19:11:01,560 creating build/bdist.linux-armv7l/wheel/multiqc/modules/trim_galore 2026-05-13T19:11:01,561 copying build/lib/multiqc/modules/trim_galore/trim_galore.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/trim_galore 2026-05-13T19:11:01,564 copying build/lib/multiqc/modules/trim_galore/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/trim_galore 2026-05-13T19:11:01,566 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2026-05-13T19:11:01,567 copying build/lib/multiqc/modules/dragen/trimmer_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,569 copying build/lib/multiqc/modules/dragen/coverage_per_contig.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,571 copying build/lib/multiqc/modules/dragen/coverage_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,575 copying build/lib/multiqc/modules/dragen/sc_atac_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,577 copying build/lib/multiqc/modules/dragen/dragen_gc_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,579 copying build/lib/multiqc/modules/dragen/dragen.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,581 copying build/lib/multiqc/modules/dragen/vc_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,584 copying build/lib/multiqc/modules/dragen/rna_quant_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,586 copying build/lib/multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,588 copying build/lib/multiqc/modules/dragen/coverage_hist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,591 copying build/lib/multiqc/modules/dragen/rna_transcript_cov.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,592 copying build/lib/multiqc/modules/dragen/overall_mean_cov.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,595 copying build/lib/multiqc/modules/dragen/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,596 copying build/lib/multiqc/modules/dragen/fragment_length.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,598 copying build/lib/multiqc/modules/dragen/time_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,600 copying build/lib/multiqc/modules/dragen/sc_rna_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,603 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen/tests 2026-05-13T19:11:01,604 copying build/lib/multiqc/modules/dragen/tests/test_dragen.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen/tests 2026-05-13T19:11:01,606 copying build/lib/multiqc/modules/dragen/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen/tests 2026-05-13T19:11:01,607 copying build/lib/multiqc/modules/dragen/mapping_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,611 copying build/lib/multiqc/modules/dragen/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-05-13T19:11:01,614 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ribotish 2026-05-13T19:11:01,615 copying build/lib/multiqc/modules/ribotish/ribotish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish 2026-05-13T19:11:01,617 copying build/lib/multiqc/modules/ribotish/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish 2026-05-13T19:11:01,619 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ribotish/tests 2026-05-13T19:11:01,620 copying build/lib/multiqc/modules/ribotish/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish/tests 2026-05-13T19:11:01,622 copying build/lib/multiqc/modules/ribotish/tests/test_ribotish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish/tests 2026-05-13T19:11:01,625 creating build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2026-05-13T19:11:01,626 copying build/lib/multiqc/modules/megahit/megahit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/megahit 2026-05-13T19:11:01,628 copying build/lib/multiqc/modules/megahit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/megahit 2026-05-13T19:11:01,631 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2026-05-13T19:11:01,632 copying build/lib/multiqc/modules/picard/VariantCallingMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,635 copying build/lib/multiqc/modules/picard/IlluminaLaneMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,637 copying build/lib/multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,639 copying build/lib/multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,641 copying build/lib/multiqc/modules/picard/WgsMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,644 copying build/lib/multiqc/modules/picard/InsertSizeMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,646 copying build/lib/multiqc/modules/picard/MarkIlluminaAdapters.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,648 copying build/lib/multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,650 copying build/lib/multiqc/modules/picard/GcBiasMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,652 copying build/lib/multiqc/modules/picard/HsMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,655 copying build/lib/multiqc/modules/picard/ValidateSamFile.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,659 copying build/lib/multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,661 copying build/lib/multiqc/modules/picard/QualityYieldMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,663 copying build/lib/multiqc/modules/picard/picard.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,666 copying build/lib/multiqc/modules/picard/util.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,669 copying build/lib/multiqc/modules/picard/QualityByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,671 copying build/lib/multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,673 copying build/lib/multiqc/modules/picard/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,675 copying build/lib/multiqc/modules/picard/CrosscheckFingerprints.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,677 copying build/lib/multiqc/modules/picard/RnaSeqMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,680 copying build/lib/multiqc/modules/picard/TargetedPcrMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,682 copying build/lib/multiqc/modules/picard/OxoGMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,684 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard/tests 2026-05-13T19:11:01,685 copying build/lib/multiqc/modules/picard/tests/test_picard.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard/tests 2026-05-13T19:11:01,687 copying build/lib/multiqc/modules/picard/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard/tests 2026-05-13T19:11:01,689 copying build/lib/multiqc/modules/picard/MarkDuplicates.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,691 copying build/lib/multiqc/modules/picard/RrbsSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-05-13T19:11:01,694 creating build/bdist.linux-armv7l/wheel/multiqc/core 2026-05-13T19:11:01,695 copying build/lib/multiqc/core/ai.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,699 creating build/bdist.linux-armv7l/wheel/multiqc/core/special_case_modules 2026-05-13T19:11:01,700 copying build/lib/multiqc/core/special_case_modules/software_versions.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2026-05-13T19:11:01,702 copying build/lib/multiqc/core/special_case_modules/custom_content.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2026-05-13T19:11:01,706 copying build/lib/multiqc/core/special_case_modules/load_multiqc_data.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2026-05-13T19:11:01,708 copying build/lib/multiqc/core/special_case_modules/profile_runtime.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2026-05-13T19:11:01,711 copying build/lib/multiqc/core/order_modules_and_sections.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,713 copying build/lib/multiqc/core/plugin_hooks.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,715 copying build/lib/multiqc/core/software_versions.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,717 copying build/lib/multiqc/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,719 copying build/lib/multiqc/core/log_and_rich.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,722 copying build/lib/multiqc/core/tmp_dir.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,723 copying build/lib/multiqc/core/strict_helpers.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,725 copying build/lib/multiqc/core/exec_modules.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,728 copying build/lib/multiqc/core/update_config.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,730 copying build/lib/multiqc/core/file_search.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,732 copying build/lib/multiqc/core/config_check.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,734 copying build/lib/multiqc/core/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,736 copying build/lib/multiqc/core/plot_data_store.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,738 copying build/lib/multiqc/core/version_check.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,740 copying build/lib/multiqc/core/write_results.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-05-13T19:11:01,743 copying build/lib/multiqc/config_defaults.yaml -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:11:01,745 copying build/lib/multiqc/search_patterns.yaml -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:11:01,748 creating build/bdist.linux-armv7l/wheel/multiqc/utils 2026-05-13T19:11:01,749 copying build/lib/multiqc/utils/testing.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,753 creating build/bdist.linux-armv7l/wheel/multiqc/utils/material_icons 2026-05-13T19:11:01,754 copying build/lib/multiqc/utils/material_icons/mdi-chevron-left.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,756 copying build/lib/multiqc/utils/material_icons/mdi-checkbox-blank-outline.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,758 copying build/lib/multiqc/utils/material_icons/mdi-help-circle.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,760 copying build/lib/multiqc/utils/material_icons/mdi-content-save.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,762 copying build/lib/multiqc/utils/material_icons/mdi-youtube.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,763 copying build/lib/multiqc/utils/material_icons/mdi-information.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,765 copying build/lib/multiqc/utils/material_icons/mdi-heart.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,767 copying build/lib/multiqc/utils/material_icons/mdi-content-save-outline.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,770 copying build/lib/multiqc/utils/material_icons/LICENSE -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,771 copying build/lib/multiqc/utils/material_icons/mdi-magnify-plus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,773 copying build/lib/multiqc/utils/material_icons/mdi-content-copy.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,775 copying build/lib/multiqc/utils/material_icons/mdi-view-column.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,777 copying build/lib/multiqc/utils/material_icons/mdi-image.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,778 copying build/lib/multiqc/utils/material_icons/mdi-chevron-down.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,780 copying build/lib/multiqc/utils/material_icons/mdi-equalizer.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,782 copying build/lib/multiqc/utils/material_icons/mdi-circle-half-full.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,784 copying build/lib/multiqc/utils/material_icons/mdi-close.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,786 copying build/lib/multiqc/utils/material_icons/mdi-alert-circle-outline.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,787 copying build/lib/multiqc/utils/material_icons/mdi-school.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,789 copying build/lib/multiqc/utils/material_icons/mdi-check-circle.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,791 copying build/lib/multiqc/utils/material_icons/mdi-plus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,793 copying build/lib/multiqc/utils/material_icons/mdi-github.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,795 copying build/lib/multiqc/utils/material_icons/mdi-thumb-up.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,797 copying build/lib/multiqc/utils/material_icons/mdi-eye-off.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,798 copying build/lib/multiqc/utils/material_icons/mdi-download.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,800 copying build/lib/multiqc/utils/material_icons/mdi-arrow-left.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,802 copying build/lib/multiqc/utils/material_icons/mdi-sort.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,804 copying build/lib/multiqc/utils/material_icons/mdi-file-document.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,806 copying build/lib/multiqc/utils/material_icons/mdi-qrcode.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,807 copying build/lib/multiqc/utils/material_icons/mdi-chevron-up.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,810 copying build/lib/multiqc/utils/material_icons/mdi-cancel.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,812 copying build/lib/multiqc/utils/material_icons/mdi-filter.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,813 copying build/lib/multiqc/utils/material_icons/mdi-pin.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,815 copying build/lib/multiqc/utils/material_icons/manifest.json -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,817 copying build/lib/multiqc/utils/material_icons/mdi-hand-pointing-up.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,819 copying build/lib/multiqc/utils/material_icons/mdi-pencil.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,820 copying build/lib/multiqc/utils/material_icons/mdi-magnify.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,822 copying build/lib/multiqc/utils/material_icons/mdi-star.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,824 copying build/lib/multiqc/utils/material_icons/mdi-home.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,826 copying build/lib/multiqc/utils/material_icons/mdi-violin.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,827 copying build/lib/multiqc/utils/material_icons/mdi-clock.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,829 copying build/lib/multiqc/utils/material_icons/mdi-warning.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,831 copying build/lib/multiqc/utils/material_icons/mdi-file.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,833 copying build/lib/multiqc/utils/material_icons/mdi-weather-sunny.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,834 copying build/lib/multiqc/utils/material_icons/mdi-book-open-page-variant.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,836 copying build/lib/multiqc/utils/material_icons/mdi-printer.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,838 copying build/lib/multiqc/utils/material_icons/mdi-alert-circle.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,840 copying build/lib/multiqc/utils/material_icons/mdi-radiobox-marked.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,842 copying build/lib/multiqc/utils/material_icons/mdi-eye.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,844 copying build/lib/multiqc/utils/material_icons/mdi-table.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,845 copying build/lib/multiqc/utils/material_icons/mdi-weather-night.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,847 copying build/lib/multiqc/utils/material_icons/mdi-format-text.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,849 copying build/lib/multiqc/utils/material_icons/mdi-refresh.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,851 copying build/lib/multiqc/utils/material_icons/mdi-view-dashboard.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,853 copying build/lib/multiqc/utils/material_icons/mdi-share.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,855 copying build/lib/multiqc/utils/material_icons/mdi-folder-open.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,857 copying build/lib/multiqc/utils/material_icons/mdi-format-bold.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,859 copying build/lib/multiqc/utils/material_icons/mdi-arrow-right.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,860 copying build/lib/multiqc/utils/material_icons/mdi-link.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,862 copying build/lib/multiqc/utils/material_icons/mdi-checkbox-marked.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,864 copying build/lib/multiqc/utils/material_icons/mdi-check.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,866 copying build/lib/multiqc/utils/material_icons/mdi-radiobox-blank.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,869 copying build/lib/multiqc/utils/material_icons/mdi-thumb-down.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,871 copying build/lib/multiqc/utils/material_icons/mdi-alert.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,873 copying build/lib/multiqc/utils/material_icons/mdi-format-align-left.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,875 copying build/lib/multiqc/utils/material_icons/mdi-folder.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,877 copying build/lib/multiqc/utils/material_icons/mdi-cog.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,879 copying build/lib/multiqc/utils/material_icons/mdi-bookmark.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,880 copying build/lib/multiqc/utils/material_icons/mdi-delete.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,882 copying build/lib/multiqc/utils/material_icons/mdi-magnify-minus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,884 copying build/lib/multiqc/utils/material_icons/mdi-chevron-right.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,886 copying build/lib/multiqc/utils/material_icons/mdi-menu.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,888 copying build/lib/multiqc/utils/material_icons/mdi-chart-scatter-plot.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,890 copying build/lib/multiqc/utils/material_icons/mdi-minus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-05-13T19:11:01,891 copying build/lib/multiqc/utils/material_icons.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,894 copying build/lib/multiqc/utils/config.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,895 copying build/lib/multiqc/utils/config_schema.json -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,899 copying build/lib/multiqc/utils/pyaml_env.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,901 copying build/lib/multiqc/utils/mqc_colour.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,903 copying build/lib/multiqc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,905 copying build/lib/multiqc/utils/util_functions.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,907 copying build/lib/multiqc/utils/config_schema.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,910 copying build/lib/multiqc/utils/report.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,912 copying build/lib/multiqc/utils/megaqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-05-13T19:11:01,914 copying build/lib/multiqc/config.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:11:01,916 copying build/lib/multiqc/__main__.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:11:01,918 creating build/bdist.linux-armv7l/wheel/multiqc/templates 2026-05-13T19:11:01,920 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default 2026-05-13T19:11:01,921 copying build/lib/multiqc/templates/default/README.md -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:01,923 copying build/lib/multiqc/templates/default/general_stats.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:01,925 copying build/lib/multiqc/templates/default/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:01,927 copying build/lib/multiqc/templates/default/header.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:01,929 copying build/lib/multiqc/templates/default/footer.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:01,932 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src 2026-05-13T19:11:01,933 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/scss 2026-05-13T19:11:01,934 copying build/lib/multiqc/templates/default/src/scss/_variables.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2026-05-13T19:11:01,936 copying build/lib/multiqc/templates/default/src/scss/custom.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2026-05-13T19:11:01,939 copying build/lib/multiqc/templates/default/src/scss/_colors.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2026-05-13T19:11:01,941 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/scss/themes 2026-05-13T19:11:01,943 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/scss/themes/dark 2026-05-13T19:11:01,944 copying build/lib/multiqc/templates/default/src/scss/themes/dark/custom.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss/themes/dark 2026-05-13T19:11:01,946 copying build/lib/multiqc/templates/default/src/scss/themes/dark/_colors.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss/themes/dark 2026-05-13T19:11:01,948 copying build/lib/multiqc/templates/default/src/scss/main.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2026-05-13T19:11:01,950 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/js 2026-05-13T19:11:01,951 copying build/lib/multiqc/templates/default/src/js/render.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,953 copying build/lib/multiqc/templates/default/src/js/main.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,955 copying build/lib/multiqc/templates/default/src/js/doi.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,957 copying build/lib/multiqc/templates/default/src/js/color-mode.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,958 copying build/lib/multiqc/templates/default/src/js/ai-helpers.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,961 copying build/lib/multiqc/templates/default/src/js/decompress.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,963 copying build/lib/multiqc/templates/default/src/js/statuses.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,965 copying build/lib/multiqc/templates/default/src/js/main-js.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,968 copying build/lib/multiqc/templates/default/src/js/toolbox.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,970 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,971 copying build/lib/multiqc/templates/default/src/js/toolbox/citations.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,973 copying build/lib/multiqc/templates/default/src/js/toolbox/help.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,975 copying build/lib/multiqc/templates/default/src/js/toolbox/export.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,977 copying build/lib/multiqc/templates/default/src/js/toolbox/hide.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,979 copying build/lib/multiqc/templates/default/src/js/toolbox/highlights.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,981 copying build/lib/multiqc/templates/default/src/js/toolbox/filters.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,983 copying build/lib/multiqc/templates/default/src/js/toolbox/utils.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,985 copying build/lib/multiqc/templates/default/src/js/toolbox/save-load.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,987 copying build/lib/multiqc/templates/default/src/js/toolbox/rename.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,990 copying build/lib/multiqc/templates/default/src/js/toolbox/ai.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,992 copying build/lib/multiqc/templates/default/src/js/toolbox/constants.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-05-13T19:11:01,994 copying build/lib/multiqc/templates/default/src/js/multiqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,995 copying build/lib/multiqc/templates/default/src/js/tables.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:01,999 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/js/plots 2026-05-13T19:11:02,000 copying build/lib/multiqc/templates/default/src/js/plots/violin.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-05-13T19:11:02,003 copying build/lib/multiqc/templates/default/src/js/plots/bar.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-05-13T19:11:02,006 copying build/lib/multiqc/templates/default/src/js/plots/line.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-05-13T19:11:02,009 copying build/lib/multiqc/templates/default/src/js/plots/scatter.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-05-13T19:11:02,011 copying build/lib/multiqc/templates/default/src/js/plots/box.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-05-13T19:11:02,013 copying build/lib/multiqc/templates/default/src/js/plots/heatmap.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-05-13T19:11:02,015 copying build/lib/multiqc/templates/default/src/js/plotting.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:02,018 copying build/lib/multiqc/templates/default/src/js/ai.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:02,020 copying build/lib/multiqc/templates/default/src/js/flat.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-05-13T19:11:02,023 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets 2026-05-13T19:11:02,024 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2026-05-13T19:11:02,025 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-05-13T19:11:02,027 copying build/lib/multiqc/templates/default/assets/img/MultiQC_icon.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-05-13T19:11:02,029 copying build/lib/multiqc/templates/default/assets/img/Anthropic_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-05-13T19:11:02,031 copying build/lib/multiqc/templates/default/assets/img/Seqera_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-05-13T19:11:02,034 copying build/lib/multiqc/templates/default/assets/img/OpenAI_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-05-13T19:11:02,035 copying build/lib/multiqc/templates/default/assets/img/Seqera_AI_icon.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-05-13T19:11:02,038 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2026-05-13T19:11:02,039 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2026-05-13T19:11:02,041 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-05-13T19:11:02,043 copying build/lib/multiqc/templates/default/assets/js/packages/jszip.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-05-13T19:11:02,047 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-05-13T19:11:02,050 copying build/lib/multiqc/templates/default/assets/js/packages/showdown.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-05-13T19:11:02,057 copying build/lib/multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-05-13T19:11:02,059 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-3.1.2.custom.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-05-13T19:11:02,085 copying build/lib/multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-05-13T19:11:02,088 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-05-13T19:11:02,091 copying build/lib/multiqc/templates/default/includes.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,093 copying build/lib/multiqc/templates/default/package.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,095 copying build/lib/multiqc/templates/default/foot.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,097 copying build/lib/multiqc/templates/default/package-lock.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,101 copying build/lib/multiqc/templates/default/CLAUDE.md -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,103 copying build/lib/multiqc/templates/default/base.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,105 copying build/lib/multiqc/templates/default/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,106 copying build/lib/multiqc/templates/default/head.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,109 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/compiled 2026-05-13T19:11:02,110 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/compiled/css 2026-05-13T19:11:02,112 copying build/lib/multiqc/templates/default/compiled/css/multiqc.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/compiled/css 2026-05-13T19:11:02,119 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/compiled/js 2026-05-13T19:11:02,120 copying build/lib/multiqc/templates/default/compiled/js/multiqc.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/compiled/js 2026-05-13T19:11:02,127 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/toolbox 2026-05-13T19:11:02,128 copying build/lib/multiqc/templates/default/toolbox/rename.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-05-13T19:11:02,130 copying build/lib/multiqc/templates/default/toolbox/citations.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-05-13T19:11:02,132 copying build/lib/multiqc/templates/default/toolbox/about.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-05-13T19:11:02,134 copying build/lib/multiqc/templates/default/toolbox/export.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-05-13T19:11:02,136 copying build/lib/multiqc/templates/default/toolbox/buttons.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-05-13T19:11:02,138 copying build/lib/multiqc/templates/default/toolbox/highlight.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-05-13T19:11:02,139 copying build/lib/multiqc/templates/default/toolbox/hide.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-05-13T19:11:02,141 copying build/lib/multiqc/templates/default/toolbox/ai.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-05-13T19:11:02,143 copying build/lib/multiqc/templates/default/toolbox/save.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-05-13T19:11:02,145 copying build/lib/multiqc/templates/default/theme_toggle.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,147 copying build/lib/multiqc/templates/default/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,149 copying build/lib/multiqc/templates/default/toolbox.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,151 copying build/lib/multiqc/templates/default/vite.config.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-05-13T19:11:02,153 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2026-05-13T19:11:02,155 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets 2026-05-13T19:11:02,157 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2026-05-13T19:11:02,158 copying build/lib/multiqc/templates/geo/assets/img/mchammer.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,162 copying build/lib/multiqc/templates/geo/assets/img/hot.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,165 copying build/lib/multiqc/templates/geo/assets/img/new2.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,167 copying build/lib/multiqc/templates/geo/assets/img/emailme.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,169 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,171 copying build/lib/multiqc/templates/geo/assets/img/stars.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,174 copying build/lib/multiqc/templates/geo/assets/img/new.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,176 copying build/lib/multiqc/templates/geo/assets/img/flames.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,179 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,181 copying build/lib/multiqc/templates/geo/assets/img/rainbow.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,184 copying build/lib/multiqc/templates/geo/assets/img/progress.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,185 copying build/lib/multiqc/templates/geo/assets/img/microfab.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-05-13T19:11:02,189 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2026-05-13T19:11:02,190 copying build/lib/multiqc/templates/geo/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/css 2026-05-13T19:11:02,194 copying build/lib/multiqc/templates/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo 2026-05-13T19:11:02,197 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco 2026-05-13T19:11:02,198 copying build/lib/multiqc/templates/disco/README.md -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2026-05-13T19:11:02,200 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/src 2026-05-13T19:11:02,202 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/src/scss 2026-05-13T19:11:02,203 copying build/lib/multiqc/templates/disco/src/scss/custom.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/scss 2026-05-13T19:11:02,205 copying build/lib/multiqc/templates/disco/src/scss/_colors.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/scss 2026-05-13T19:11:02,207 copying build/lib/multiqc/templates/disco/src/scss/main.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/scss 2026-05-13T19:11:02,210 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/src/js 2026-05-13T19:11:02,211 copying build/lib/multiqc/templates/disco/src/js/main.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/js 2026-05-13T19:11:02,213 copying build/lib/multiqc/templates/disco/package.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2026-05-13T19:11:02,214 copying build/lib/multiqc/templates/disco/package-lock.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2026-05-13T19:11:02,218 copying build/lib/multiqc/templates/disco/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2026-05-13T19:11:02,220 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/compiled 2026-05-13T19:11:02,222 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/compiled/css 2026-05-13T19:11:02,223 copying build/lib/multiqc/templates/disco/compiled/css/multiqc.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/compiled/css 2026-05-13T19:11:02,233 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/compiled/js 2026-05-13T19:11:02,234 copying build/lib/multiqc/templates/disco/compiled/js/multiqc.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/compiled/js 2026-05-13T19:11:02,242 copying build/lib/multiqc/templates/disco/vite.config.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2026-05-13T19:11:02,244 creating build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2026-05-13T19:11:02,245 copying build/lib/multiqc/templates/simple/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-05-13T19:11:02,247 copying build/lib/multiqc/templates/simple/header.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-05-13T19:11:02,249 copying build/lib/multiqc/templates/simple/footer.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-05-13T19:11:02,251 copying build/lib/multiqc/templates/simple/includes.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-05-13T19:11:02,253 copying build/lib/multiqc/templates/simple/foot.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-05-13T19:11:02,254 copying build/lib/multiqc/templates/simple/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-05-13T19:11:02,256 copying build/lib/multiqc/templates/simple/toolbox.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-05-13T19:11:02,259 creating build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2026-05-13T19:11:02,260 copying build/lib/multiqc/templates/sections/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/sections 2026-05-13T19:11:02,262 copying build/lib/multiqc/templates/sections/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/sections 2026-05-13T19:11:02,265 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original 2026-05-13T19:11:02,266 copying build/lib/multiqc/templates/original/general_stats.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,268 copying build/lib/multiqc/templates/original/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,270 copying build/lib/multiqc/templates/original/header.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,273 copying build/lib/multiqc/templates/original/footer.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,275 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets 2026-05-13T19:11:02,276 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/img 2026-05-13T19:11:02,278 copying build/lib/multiqc/templates/original/assets/img/favicon-96x96.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-05-13T19:11:02,280 copying build/lib/multiqc/templates/original/assets/img/seqera_logo.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-05-13T19:11:02,282 copying build/lib/multiqc/templates/original/assets/img/favicon-16x16.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-05-13T19:11:02,284 copying build/lib/multiqc/templates/original/assets/img/MultiQC_logo_dark.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-05-13T19:11:02,286 copying build/lib/multiqc/templates/original/assets/img/MultiQC_logo.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-05-13T19:11:02,289 copying build/lib/multiqc/templates/original/assets/img/favicon-32x32.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-05-13T19:11:02,291 copying build/lib/multiqc/templates/original/assets/img/seqera_logo_mono.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-05-13T19:11:02,293 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/css 2026-05-13T19:11:02,295 copying build/lib/multiqc/templates/original/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/css 2026-05-13T19:11:02,300 copying build/lib/multiqc/templates/original/assets/css/jquery.toast.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/css 2026-05-13T19:11:02,303 copying build/lib/multiqc/templates/original/assets/css/default_multiqc.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/css 2026-05-13T19:11:02,306 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/fonts 2026-05-13T19:11:02,307 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff2 -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2026-05-13T19:11:02,310 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2026-05-13T19:11:02,312 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.ttf -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2026-05-13T19:11:02,315 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.eot -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2026-05-13T19:11:02,318 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2026-05-13T19:11:02,361 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/js 2026-05-13T19:11:02,362 copying build/lib/multiqc/templates/original/assets/js/render.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-05-13T19:11:02,364 copying build/lib/multiqc/templates/original/assets/js/ai-helpers.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-05-13T19:11:02,366 copying build/lib/multiqc/templates/original/assets/js/decompress.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-05-13T19:11:02,368 copying build/lib/multiqc/templates/original/assets/js/toolbox.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-05-13T19:11:02,372 copying build/lib/multiqc/templates/original/assets/js/multiqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-05-13T19:11:02,374 copying build/lib/multiqc/templates/original/assets/js/tables.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-05-13T19:11:02,377 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,378 copying build/lib/multiqc/templates/original/assets/js/packages/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,381 copying build/lib/multiqc/templates/original/assets/js/packages/jszip.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,385 copying build/lib/multiqc/templates/original/assets/js/packages/jquery.tablesorter.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,388 copying build/lib/multiqc/templates/original/assets/js/packages/plotly-2.27.0.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,449 copying build/lib/multiqc/templates/original/assets/js/packages/showdown.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,453 copying build/lib/multiqc/templates/original/assets/js/packages/FileSaver.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,455 copying build/lib/multiqc/templates/original/assets/js/packages/jquery.toast.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,457 copying build/lib/multiqc/templates/original/assets/js/packages/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,460 copying build/lib/multiqc/templates/original/assets/js/packages/pako_inflate.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,463 copying build/lib/multiqc/templates/original/assets/js/packages/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,467 copying build/lib/multiqc/templates/original/assets/js/packages/plotly-2.27.0.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-05-13T19:11:02,609 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/js/plots 2026-05-13T19:11:02,610 copying build/lib/multiqc/templates/original/assets/js/plots/violin.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-05-13T19:11:02,612 copying build/lib/multiqc/templates/original/assets/js/plots/bar.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-05-13T19:11:02,614 copying build/lib/multiqc/templates/original/assets/js/plots/line.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-05-13T19:11:02,616 copying build/lib/multiqc/templates/original/assets/js/plots/scatter.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-05-13T19:11:02,619 copying build/lib/multiqc/templates/original/assets/js/plots/box.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-05-13T19:11:02,621 copying build/lib/multiqc/templates/original/assets/js/plots/heatmap.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-05-13T19:11:02,623 copying build/lib/multiqc/templates/original/assets/js/plotting.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-05-13T19:11:02,626 copying build/lib/multiqc/templates/original/assets/js/ai.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-05-13T19:11:02,628 copying build/lib/multiqc/templates/original/assets/js/flat.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-05-13T19:11:02,630 copying build/lib/multiqc/templates/original/includes.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,632 copying build/lib/multiqc/templates/original/foot.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,634 copying build/lib/multiqc/templates/original/base.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,636 copying build/lib/multiqc/templates/original/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,638 copying build/lib/multiqc/templates/original/head.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,639 copying build/lib/multiqc/templates/original/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,642 copying build/lib/multiqc/templates/original/toolbox.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-05-13T19:11:02,644 copying build/lib/multiqc/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates 2026-05-13T19:11:02,646 creating build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2026-05-13T19:11:02,647 copying build/lib/multiqc/templates/gathered/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/gathered 2026-05-13T19:11:02,649 copying build/lib/multiqc/templates/gathered/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/gathered 2026-05-13T19:11:02,651 copying build/lib/multiqc/templates/gathered/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/gathered 2026-05-13T19:11:02,653 copying build/lib/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:11:02,655 copying build/lib/multiqc/interactive.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:11:02,657 copying build/lib/multiqc/py.typed -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:11:02,659 creating build/bdist.linux-armv7l/wheel/multiqc/plots 2026-05-13T19:11:02,660 copying build/lib/multiqc/plots/violin.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,663 copying build/lib/multiqc/plots/linegraph.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,666 copying build/lib/multiqc/plots/plot.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,670 copying build/lib/multiqc/plots/box.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,673 copying build/lib/multiqc/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,676 copying build/lib/multiqc/plots/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,679 copying build/lib/multiqc/plots/scatter.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,682 copying build/lib/multiqc/plots/table_object.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,687 copying build/lib/multiqc/plots/bargraph.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,691 copying build/lib/multiqc/plots/table.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,693 copying build/lib/multiqc/plots/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-05-13T19:11:02,695 copying build/lib/multiqc/multiqc.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:11:02,698 copying build/lib/multiqc/types.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:11:02,701 copying build/lib/multiqc/report.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-05-13T19:11:02,704 running install_egg_info 2026-05-13T19:11:02,711 Copying multiqc.egg-info to build/bdist.linux-armv7l/wheel/./multiqc-1.35-py3.11.egg-info 2026-05-13T19:11:02,729 running install_scripts 2026-05-13T19:11:02,747 creating build/bdist.linux-armv7l/wheel/multiqc-1.35.dist-info/WHEEL 2026-05-13T19:11:02,751 creating '/tmp/pip-wheel-o68a5cve/.tmp-bq_zptfk/multiqc-1.35-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-13T19:11:02,754 adding 'multiqc/__init__.py' 2026-05-13T19:11:02,756 adding 'multiqc/__main__.py' 2026-05-13T19:11:02,767 adding 'multiqc/base_module.py' 2026-05-13T19:11:02,773 adding 'multiqc/config.py' 2026-05-13T19:11:02,776 adding 'multiqc/config_defaults.yaml' 2026-05-13T19:11:02,779 adding 'multiqc/interactive.py' 2026-05-13T19:11:02,782 adding 'multiqc/multiqc.py' 2026-05-13T19:11:02,783 adding 'multiqc/py.typed' 2026-05-13T19:11:02,790 adding 'multiqc/report.py' 2026-05-13T19:11:02,794 adding 'multiqc/search_patterns.yaml' 2026-05-13T19:11:02,796 adding 'multiqc/types.py' 2026-05-13T19:11:02,798 adding 'multiqc/validation.py' 2026-05-13T19:11:02,800 adding 'multiqc/core/__init__.py' 2026-05-13T19:11:02,805 adding 'multiqc/core/ai.py' 2026-05-13T19:11:02,807 adding 'multiqc/core/config_check.py' 2026-05-13T19:11:02,808 adding 'multiqc/core/exceptions.py' 2026-05-13T19:11:02,810 adding 'multiqc/core/exec_modules.py' 2026-05-13T19:11:02,812 adding 'multiqc/core/file_search.py' 2026-05-13T19:11:02,814 adding 'multiqc/core/log_and_rich.py' 2026-05-13T19:11:02,816 adding 'multiqc/core/order_modules_and_sections.py' 2026-05-13T19:11:02,818 adding 'multiqc/core/plot_data_store.py' 2026-05-13T19:11:02,819 adding 'multiqc/core/plugin_hooks.py' 2026-05-13T19:11:02,821 adding 'multiqc/core/software_versions.py' 2026-05-13T19:11:02,822 adding 'multiqc/core/strict_helpers.py' 2026-05-13T19:11:02,823 adding 'multiqc/core/tmp_dir.py' 2026-05-13T19:11:02,825 adding 'multiqc/core/update_config.py' 2026-05-13T19:11:02,827 adding 'multiqc/core/version_check.py' 2026-05-13T19:11:02,830 adding 'multiqc/core/write_results.py' 2026-05-13T19:11:02,836 adding 'multiqc/core/special_case_modules/custom_content.py' 2026-05-13T19:11:02,839 adding 'multiqc/core/special_case_modules/load_multiqc_data.py' 2026-05-13T19:11:02,840 adding 'multiqc/core/special_case_modules/profile_runtime.py' 2026-05-13T19:11:02,842 adding 'multiqc/core/special_case_modules/software_versions.py' 2026-05-13T19:11:02,847 adding 'multiqc/modules/__init__.py' 2026-05-13T19:11:02,848 adding 'multiqc/modules/adapterremoval/__init__.py' 2026-05-13T19:11:02,850 adding 'multiqc/modules/adapterremoval/adapterremoval.py' 2026-05-13T19:11:02,852 adding 'multiqc/modules/afterqc/__init__.py' 2026-05-13T19:11:02,853 adding 'multiqc/modules/afterqc/afterqc.py' 2026-05-13T19:11:02,855 adding 'multiqc/modules/anglerfish/__init__.py' 2026-05-13T19:11:02,857 adding 'multiqc/modules/anglerfish/anglerfish.py' 2026-05-13T19:11:02,859 adding 'multiqc/modules/ataqv/__init__.py' 2026-05-13T19:11:02,861 adding 'multiqc/modules/ataqv/ataqv.py' 2026-05-13T19:11:02,862 adding 'multiqc/modules/bakta/__init__.py' 2026-05-13T19:11:02,864 adding 'multiqc/modules/bakta/bakta.py' 2026-05-13T19:11:02,865 adding 'multiqc/modules/bamdst/__init__.py' 2026-05-13T19:11:02,868 adding 'multiqc/modules/bamdst/bamdst.py' 2026-05-13T19:11:02,869 adding 'multiqc/modules/bamtools/__init__.py' 2026-05-13T19:11:02,871 adding 'multiqc/modules/bamtools/bamtools.py' 2026-05-13T19:11:02,872 adding 'multiqc/modules/bamtools/stats.py' 2026-05-13T19:11:02,874 adding 'multiqc/modules/bases2fastq/__init__.py' 2026-05-13T19:11:02,879 adding 'multiqc/modules/bases2fastq/bases2fastq.py' 2026-05-13T19:11:02,883 adding 'multiqc/modules/bases2fastq/plot_runs.py' 2026-05-13T19:11:02,885 adding 'multiqc/modules/bases2fastq/plot_samples.py' 2026-05-13T19:11:02,887 adding 'multiqc/modules/bases2fastq/tests/conftest.py' 2026-05-13T19:11:02,890 adding 'multiqc/modules/bases2fastq/tests/test_bases2fastq.py' 2026-05-13T19:11:02,892 adding 'multiqc/modules/bases2fastq/tests/fixtures/project_runstats.json' 2026-05-13T19:11:02,893 adding 'multiqc/modules/bases2fastq/tests/fixtures/run_manifest.json' 2026-05-13T19:11:02,894 adding 'multiqc/modules/bases2fastq/tests/fixtures/run_manifest_with_samples.json' 2026-05-13T19:11:02,895 adding 'multiqc/modules/bases2fastq/tests/fixtures/run_runstats.json' 2026-05-13T19:11:02,896 adding 'multiqc/modules/bases2fastq/tests/fixtures/run_runstats_low_polonies.json' 2026-05-13T19:11:02,898 adding 'multiqc/modules/bases2fastq/tests/fixtures/run_runstats_with_occurrences.json' 2026-05-13T19:11:02,899 adding 'multiqc/modules/bases2fastq/tests/fixtures/run_runstats_with_unassigned.json' 2026-05-13T19:11:02,901 adding 'multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/RunManifest.json' 2026-05-13T19:11:02,902 adding 'multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/RunStats.json' 2026-05-13T19:11:02,905 adding 'multiqc/modules/bases2fastq/tests/fixtures/PairedEndDefaultProject/Samples/DefaultProject/DefaultProject_RunStats.json' 2026-05-13T19:11:02,906 adding 'multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProject/RunStats.json' 2026-05-13T19:11:02,908 adding 'multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectLowPolonies/RunStats.json' 2026-05-13T19:11:02,910 adding 'multiqc/modules/bases2fastq/tests/fixtures/PairedEndNoProjectWithLanes/RunStats.json' 2026-05-13T19:11:02,911 adding 'multiqc/modules/bbduk/__init__.py' 2026-05-13T19:11:02,913 adding 'multiqc/modules/bbduk/bbduk.py' 2026-05-13T19:11:02,915 adding 'multiqc/modules/bbmap/__init__.py' 2026-05-13T19:11:02,917 adding 'multiqc/modules/bbmap/bbmap.py' 2026-05-13T19:11:02,920 adding 'multiqc/modules/bbmap/bbmap_filetypes.py' 2026-05-13T19:11:02,921 adding 'multiqc/modules/bbmap/plot_aqhist.py' 2026-05-13T19:11:02,922 adding 'multiqc/modules/bbmap/plot_basic_hist.py' 2026-05-13T19:11:02,924 adding 'multiqc/modules/bbmap/plot_bbsplit.py' 2026-05-13T19:11:02,925 adding 'multiqc/modules/bbmap/plot_bhist.py' 2026-05-13T19:11:02,926 adding 'multiqc/modules/bbmap/plot_bqhist.py' 2026-05-13T19:11:02,927 adding 'multiqc/modules/bbmap/plot_covhist.py' 2026-05-13T19:11:02,929 adding 'multiqc/modules/bbmap/plot_idhist.py' 2026-05-13T19:11:02,930 adding 'multiqc/modules/bbmap/plot_ihist.py' 2026-05-13T19:11:02,931 adding 'multiqc/modules/bbmap/plot_indelhist.py' 2026-05-13T19:11:02,932 adding 'multiqc/modules/bbmap/plot_mhist.py' 2026-05-13T19:11:02,934 adding 'multiqc/modules/bbmap/plot_qahist.py' 2026-05-13T19:11:02,935 adding 'multiqc/modules/bbmap/plot_qchist.py' 2026-05-13T19:11:02,936 adding 'multiqc/modules/bbmap/plot_qhist.py' 2026-05-13T19:11:02,938 adding 'multiqc/modules/bcftools/__init__.py' 2026-05-13T19:11:02,939 adding 'multiqc/modules/bcftools/bcftools.py' 2026-05-13T19:11:02,942 adding 'multiqc/modules/bcftools/stats.py' 2026-05-13T19:11:02,944 adding 'multiqc/modules/bcl2fastq/__init__.py' 2026-05-13T19:11:02,946 adding 'multiqc/modules/bcl2fastq/bcl2fastq.py' 2026-05-13T19:11:02,948 adding 'multiqc/modules/bclconvert/__init__.py' 2026-05-13T19:11:02,953 adding 'multiqc/modules/bclconvert/bclconvert.py' 2026-05-13T19:11:02,955 adding 'multiqc/modules/biobambam2/__init__.py' 2026-05-13T19:11:02,956 adding 'multiqc/modules/biobambam2/biobambam2.py' 2026-05-13T19:11:02,958 adding 'multiqc/modules/biobloomtools/__init__.py' 2026-05-13T19:11:02,960 adding 'multiqc/modules/biobloomtools/biobloomtools.py' 2026-05-13T19:11:02,961 adding 'multiqc/modules/biscuit/__init__.py' 2026-05-13T19:11:02,965 adding 'multiqc/modules/biscuit/biscuit.py' 2026-05-13T19:11:02,967 adding 'multiqc/modules/biscuit/tests/__init__.py' 2026-05-13T19:11:02,968 adding 'multiqc/modules/biscuit/tests/test_biscuit.py' 2026-05-13T19:11:02,970 adding 'multiqc/modules/bismark/__init__.py' 2026-05-13T19:11:02,972 adding 'multiqc/modules/bismark/bismark.py' 2026-05-13T19:11:02,974 adding 'multiqc/modules/bowtie1/__init__.py' 2026-05-13T19:11:02,976 adding 'multiqc/modules/bowtie1/bowtie1.py' 2026-05-13T19:11:02,977 adding 'multiqc/modules/bowtie2/__init__.py' 2026-05-13T19:11:02,980 adding 'multiqc/modules/bowtie2/bowtie2.py' 2026-05-13T19:11:02,981 adding 'multiqc/modules/busco/__init__.py' 2026-05-13T19:11:02,983 adding 'multiqc/modules/busco/busco.py' 2026-05-13T19:11:02,984 adding 'multiqc/modules/bustools/__init__.py' 2026-05-13T19:11:02,986 adding 'multiqc/modules/bustools/bustools.py' 2026-05-13T19:11:02,988 adding 'multiqc/modules/ccs/__init__.py' 2026-05-13T19:11:02,990 adding 'multiqc/modules/ccs/ccs.py' 2026-05-13T19:11:02,992 adding 'multiqc/modules/ccs/tests/__init__.py' 2026-05-13T19:11:02,993 adding 'multiqc/modules/ccs/tests/test_ccs.py' 2026-05-13T19:11:02,995 adding 'multiqc/modules/cellranger/__init__.py' 2026-05-13T19:11:02,997 adding 'multiqc/modules/cellranger/cellranger.py' 2026-05-13T19:11:02,999 adding 'multiqc/modules/cellranger/count.py' 2026-05-13T19:11:03,000 adding 'multiqc/modules/cellranger/utils.py' 2026-05-13T19:11:03,002 adding 'multiqc/modules/cellranger/vdj.py' 2026-05-13T19:11:03,004 adding 'multiqc/modules/cellranger_arc/__init__.py' 2026-05-13T19:11:03,006 adding 'multiqc/modules/cellranger_arc/cellranger_arc.py' 2026-05-13T19:11:03,008 adding 'multiqc/modules/cellranger_arc/utils.py' 2026-05-13T19:11:03,010 adding 'multiqc/modules/cellranger_arc/tests/__init__.py' 2026-05-13T19:11:03,011 adding 'multiqc/modules/cellranger_arc/tests/test_cellranger_arc.py' 2026-05-13T19:11:03,013 adding 'multiqc/modules/cells2stats/__init__.py' 2026-05-13T19:11:03,015 adding 'multiqc/modules/cells2stats/cells2stats.py' 2026-05-13T19:11:03,017 adding 'multiqc/modules/cells2stats/cells2stats_bar_plots.py' 2026-05-13T19:11:03,019 adding 'multiqc/modules/cells2stats/cells2stats_tables.py' 2026-05-13T19:11:03,020 adding 'multiqc/modules/cells2stats/queries.py' 2026-05-13T19:11:03,022 adding 'multiqc/modules/cells2stats/utils.py' 2026-05-13T19:11:03,023 adding 'multiqc/modules/checkatlas/__init__.py' 2026-05-13T19:11:03,026 adding 'multiqc/modules/checkatlas/checkatlas.py' 2026-05-13T19:11:03,028 adding 'multiqc/modules/checkm/__init__.py' 2026-05-13T19:11:03,029 adding 'multiqc/modules/checkm/checkm.py' 2026-05-13T19:11:03,031 adding 'multiqc/modules/checkm2/__init__.py' 2026-05-13T19:11:03,032 adding 'multiqc/modules/checkm2/checkm2.py' 2026-05-13T19:11:03,034 adding 'multiqc/modules/checkqc/__init__.py' 2026-05-13T19:11:03,036 adding 'multiqc/modules/checkqc/checkqc.py' 2026-05-13T19:11:03,038 adding 'multiqc/modules/clipandmerge/__init__.py' 2026-05-13T19:11:03,039 adding 'multiqc/modules/clipandmerge/clipandmerge.py' 2026-05-13T19:11:03,041 adding 'multiqc/modules/clusterflow/__init__.py' 2026-05-13T19:11:03,043 adding 'multiqc/modules/clusterflow/clusterflow.py' 2026-05-13T19:11:03,045 adding 'multiqc/modules/conpair/__init__.py' 2026-05-13T19:11:03,046 adding 'multiqc/modules/conpair/conpair.py' 2026-05-13T19:11:03,048 adding 'multiqc/modules/cutadapt/__init__.py' 2026-05-13T19:11:03,051 adding 'multiqc/modules/cutadapt/cutadapt.py' 2026-05-13T19:11:03,052 adding 'multiqc/modules/damageprofiler/__init__.py' 2026-05-13T19:11:03,054 adding 'multiqc/modules/damageprofiler/damageprofiler.py' 2026-05-13T19:11:03,056 adding 'multiqc/modules/deacon/__init__.py' 2026-05-13T19:11:03,058 adding 'multiqc/modules/deacon/deacon.py' 2026-05-13T19:11:03,060 adding 'multiqc/modules/dedup/__init__.py' 2026-05-13T19:11:03,061 adding 'multiqc/modules/dedup/dedup.py' 2026-05-13T19:11:03,063 adding 'multiqc/modules/deeptools/__init__.py' 2026-05-13T19:11:03,065 adding 'multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py' 2026-05-13T19:11:03,066 adding 'multiqc/modules/deeptools/bamPEFragmentSizeTable.py' 2026-05-13T19:11:03,068 adding 'multiqc/modules/deeptools/deeptools.py' 2026-05-13T19:11:03,069 adding 'multiqc/modules/deeptools/estimateReadFiltering.py' 2026-05-13T19:11:03,071 adding 'multiqc/modules/deeptools/plotCorrelation.py' 2026-05-13T19:11:03,072 adding 'multiqc/modules/deeptools/plotCoverage.py' 2026-05-13T19:11:03,074 adding 'multiqc/modules/deeptools/plotEnrichment.py' 2026-05-13T19:11:03,076 adding 'multiqc/modules/deeptools/plotFingerprint.py' 2026-05-13T19:11:03,077 adding 'multiqc/modules/deeptools/plotPCA.py' 2026-05-13T19:11:03,079 adding 'multiqc/modules/deeptools/plotProfile.py' 2026-05-13T19:11:03,080 adding 'multiqc/modules/diamond/__init__.py' 2026-05-13T19:11:03,082 adding 'multiqc/modules/diamond/diamond.py' 2026-05-13T19:11:03,084 adding 'multiqc/modules/disambiguate/__init__.py' 2026-05-13T19:11:03,085 adding 'multiqc/modules/disambiguate/disambiguate.py' 2026-05-13T19:11:03,087 adding 'multiqc/modules/dragen/__init__.py' 2026-05-13T19:11:03,088 adding 'multiqc/modules/dragen/coverage_hist.py' 2026-05-13T19:11:03,097 adding 'multiqc/modules/dragen/coverage_metrics.py' 2026-05-13T19:11:03,099 adding 'multiqc/modules/dragen/coverage_per_contig.py' 2026-05-13T19:11:03,100 adding 'multiqc/modules/dragen/dragen.py' 2026-05-13T19:11:03,102 adding 'multiqc/modules/dragen/dragen_gc_metrics.py' 2026-05-13T19:11:03,103 adding 'multiqc/modules/dragen/fragment_length.py' 2026-05-13T19:11:03,107 adding 'multiqc/modules/dragen/mapping_metrics.py' 2026-05-13T19:11:03,109 adding 'multiqc/modules/dragen/overall_mean_cov.py' 2026-05-13T19:11:03,110 adding 'multiqc/modules/dragen/ploidy_estimation_metrics.py' 2026-05-13T19:11:03,112 adding 'multiqc/modules/dragen/rna_quant_metrics.py' 2026-05-13T19:11:03,113 adding 'multiqc/modules/dragen/rna_transcript_cov.py' 2026-05-13T19:11:03,114 adding 'multiqc/modules/dragen/sc_atac_metrics.py' 2026-05-13T19:11:03,116 adding 'multiqc/modules/dragen/sc_rna_metrics.py' 2026-05-13T19:11:03,117 adding 'multiqc/modules/dragen/time_metrics.py' 2026-05-13T19:11:03,119 adding 'multiqc/modules/dragen/trimmer_metrics.py' 2026-05-13T19:11:03,121 adding 'multiqc/modules/dragen/utils.py' 2026-05-13T19:11:03,123 adding 'multiqc/modules/dragen/vc_metrics.py' 2026-05-13T19:11:03,125 adding 'multiqc/modules/dragen/tests/__init__.py' 2026-05-13T19:11:03,126 adding 'multiqc/modules/dragen/tests/test_dragen.py' 2026-05-13T19:11:03,128 adding 'multiqc/modules/dragen_fastqc/__init__.py' 2026-05-13T19:11:03,129 adding 'multiqc/modules/dragen_fastqc/base_metrics.py' 2026-05-13T19:11:03,131 adding 'multiqc/modules/dragen_fastqc/content_metrics.py' 2026-05-13T19:11:03,133 adding 'multiqc/modules/dragen_fastqc/dragen_fastqc.py' 2026-05-13T19:11:03,134 adding 'multiqc/modules/dragen_fastqc/gc_metrics.py' 2026-05-13T19:11:03,136 adding 'multiqc/modules/dragen_fastqc/read_metrics.py' 2026-05-13T19:11:03,137 adding 'multiqc/modules/dragen_fastqc/util.py' 2026-05-13T19:11:03,141 adding 'multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js' 2026-05-13T19:11:03,142 adding 'multiqc/modules/eigenstratdatabasetools/__init__.py' 2026-05-13T19:11:03,144 adding 'multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py' 2026-05-13T19:11:03,145 adding 'multiqc/modules/fastp/__init__.py' 2026-05-13T19:11:03,148 adding 'multiqc/modules/fastp/fastp.py' 2026-05-13T19:11:03,150 adding 'multiqc/modules/fastq_screen/__init__.py' 2026-05-13T19:11:03,152 adding 'multiqc/modules/fastq_screen/fastq_screen.py' 2026-05-13T19:11:03,154 adding 'multiqc/modules/fastqc/__init__.py' 2026-05-13T19:11:03,161 adding 'multiqc/modules/fastqc/fastqc.py' 2026-05-13T19:11:03,164 adding 'multiqc/modules/fastqc/assets/css/multiqc_fastqc.css' 2026-05-13T19:11:03,167 adding 'multiqc/modules/fastqc/assets/js/multiqc_fastqc.js' 2026-05-13T19:11:03,169 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt' 2026-05-13T19:11:03,170 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt' 2026-05-13T19:11:03,172 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt' 2026-05-13T19:11:03,173 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt' 2026-05-13T19:11:03,174 adding 'multiqc/modules/fastqe/__init__.py' 2026-05-13T19:11:03,176 adding 'multiqc/modules/fastqe/fastqe.py' 2026-05-13T19:11:03,178 adding 'multiqc/modules/featurecounts/__init__.py' 2026-05-13T19:11:03,179 adding 'multiqc/modules/featurecounts/featurecounts.py' 2026-05-13T19:11:03,181 adding 'multiqc/modules/fgbio/__init__.py' 2026-05-13T19:11:03,183 adding 'multiqc/modules/fgbio/error_rate_by_read_position.py' 2026-05-13T19:11:03,184 adding 'multiqc/modules/fgbio/fgbio.py' 2026-05-13T19:11:03,185 adding 'multiqc/modules/fgbio/group_reads_by_umi.py' 2026-05-13T19:11:03,187 adding 'multiqc/modules/filtlong/__init__.py' 2026-05-13T19:11:03,189 adding 'multiqc/modules/filtlong/filtlong.py' 2026-05-13T19:11:03,190 adding 'multiqc/modules/flash/__init__.py' 2026-05-13T19:11:03,192 adding 'multiqc/modules/flash/flash.py' 2026-05-13T19:11:03,194 adding 'multiqc/modules/flexbar/__init__.py' 2026-05-13T19:11:03,196 adding 'multiqc/modules/flexbar/flexbar.py' 2026-05-13T19:11:03,197 adding 'multiqc/modules/freyja/__init__.py' 2026-05-13T19:11:03,199 adding 'multiqc/modules/freyja/freyja.py' 2026-05-13T19:11:03,201 adding 'multiqc/modules/ganon/__init__.py' 2026-05-13T19:11:03,203 adding 'multiqc/modules/ganon/ganon.py' 2026-05-13T19:11:03,205 adding 'multiqc/modules/gatk/__init__.py' 2026-05-13T19:11:03,207 adding 'multiqc/modules/gatk/analyze_saturation_mutagenesis.py' 2026-05-13T19:11:03,209 adding 'multiqc/modules/gatk/base_recalibrator.py' 2026-05-13T19:11:03,210 adding 'multiqc/modules/gatk/gatk.py' 2026-05-13T19:11:03,212 adding 'multiqc/modules/gatk/utils.py' 2026-05-13T19:11:03,214 adding 'multiqc/modules/gatk/varianteval.py' 2026-05-13T19:11:03,215 adding 'multiqc/modules/gffcompare/__init__.py' 2026-05-13T19:11:03,217 adding 'multiqc/modules/gffcompare/gffcompare.py' 2026-05-13T19:11:03,219 adding 'multiqc/modules/glimpse/__init__.py' 2026-05-13T19:11:03,221 adding 'multiqc/modules/glimpse/err_grp.py' 2026-05-13T19:11:03,223 adding 'multiqc/modules/glimpse/err_spl.py' 2026-05-13T19:11:03,224 adding 'multiqc/modules/glimpse/glimpse.py' 2026-05-13T19:11:03,226 adding 'multiqc/modules/goleft_indexcov/__init__.py' 2026-05-13T19:11:03,228 adding 'multiqc/modules/goleft_indexcov/goleft_indexcov.py' 2026-05-13T19:11:03,230 adding 'multiqc/modules/gopeaks/__init__.py' 2026-05-13T19:11:03,231 adding 'multiqc/modules/gopeaks/gopeaks.py' 2026-05-13T19:11:03,233 adding 'multiqc/modules/gtdbtk/__init__.py' 2026-05-13T19:11:03,234 adding 'multiqc/modules/gtdbtk/gtdbtk.py' 2026-05-13T19:11:03,236 adding 'multiqc/modules/haplocheck/__init__.py' 2026-05-13T19:11:03,237 adding 'multiqc/modules/haplocheck/haplocheck.py' 2026-05-13T19:11:03,239 adding 'multiqc/modules/happy/__init__.py' 2026-05-13T19:11:03,241 adding 'multiqc/modules/happy/happy.py' 2026-05-13T19:11:03,242 adding 'multiqc/modules/hicexplorer/__init__.py' 2026-05-13T19:11:03,244 adding 'multiqc/modules/hicexplorer/hicexplorer.py' 2026-05-13T19:11:03,246 adding 'multiqc/modules/hicpro/__init__.py' 2026-05-13T19:11:03,248 adding 'multiqc/modules/hicpro/hicpro.py' 2026-05-13T19:11:03,250 adding 'multiqc/modules/hicstuff/__init__.py' 2026-05-13T19:11:03,252 adding 'multiqc/modules/hicstuff/hicstuff.py' 2026-05-13T19:11:03,254 adding 'multiqc/modules/hicup/__init__.py' 2026-05-13T19:11:03,256 adding 'multiqc/modules/hicup/hicup.py' 2026-05-13T19:11:03,258 adding 'multiqc/modules/hifi_trimmer/__init__.py' 2026-05-13T19:11:03,260 adding 'multiqc/modules/hifi_trimmer/hifi_trimmer.py' 2026-05-13T19:11:03,261 adding 'multiqc/modules/hifiasm/__init__.py' 2026-05-13T19:11:03,263 adding 'multiqc/modules/hifiasm/hifiasm.py' 2026-05-13T19:11:03,265 adding 'multiqc/modules/hisat2/__init__.py' 2026-05-13T19:11:03,266 adding 'multiqc/modules/hisat2/hisat2.py' 2026-05-13T19:11:03,268 adding 'multiqc/modules/homer/__init__.py' 2026-05-13T19:11:03,269 adding 'multiqc/modules/homer/findpeaks.py' 2026-05-13T19:11:03,271 adding 'multiqc/modules/homer/homer.py' 2026-05-13T19:11:03,273 adding 'multiqc/modules/homer/tagdirectory.py' 2026-05-13T19:11:03,275 adding 'multiqc/modules/hops/__init__.py' 2026-05-13T19:11:03,277 adding 'multiqc/modules/hops/hops.py' 2026-05-13T19:11:03,278 adding 'multiqc/modules/hostile/__init__.py' 2026-05-13T19:11:03,280 adding 'multiqc/modules/hostile/hostile.py' 2026-05-13T19:11:03,282 adding 'multiqc/modules/htseq/__init__.py' 2026-05-13T19:11:03,283 adding 'multiqc/modules/htseq/htseq.py' 2026-05-13T19:11:03,285 adding 'multiqc/modules/humid/__init__.py' 2026-05-13T19:11:03,287 adding 'multiqc/modules/humid/clusters.py' 2026-05-13T19:11:03,288 adding 'multiqc/modules/humid/counts.py' 2026-05-13T19:11:03,290 adding 'multiqc/modules/humid/humid.py' 2026-05-13T19:11:03,291 adding 'multiqc/modules/humid/neighbours.py' 2026-05-13T19:11:03,292 adding 'multiqc/modules/humid/stats.py' 2026-05-13T19:11:03,294 adding 'multiqc/modules/interop/__init__.py' 2026-05-13T19:11:03,296 adding 'multiqc/modules/interop/interop.py' 2026-05-13T19:11:03,298 adding 'multiqc/modules/isoseq/__init__.py' 2026-05-13T19:11:03,300 adding 'multiqc/modules/isoseq/isoseq.py' 2026-05-13T19:11:03,302 adding 'multiqc/modules/ivar/__init__.py' 2026-05-13T19:11:03,304 adding 'multiqc/modules/ivar/ivar.py' 2026-05-13T19:11:03,306 adding 'multiqc/modules/jcvi/__init__.py' 2026-05-13T19:11:03,308 adding 'multiqc/modules/jcvi/jcvi.py' 2026-05-13T19:11:03,310 adding 'multiqc/modules/jellyfish/__init__.py' 2026-05-13T19:11:03,311 adding 'multiqc/modules/jellyfish/jellyfish.py' 2026-05-13T19:11:03,313 adding 'multiqc/modules/kaiju/__init__.py' 2026-05-13T19:11:03,315 adding 'multiqc/modules/kaiju/kaiju.py' 2026-05-13T19:11:03,317 adding 'multiqc/modules/kallisto/__init__.py' 2026-05-13T19:11:03,319 adding 'multiqc/modules/kallisto/kallisto.py' 2026-05-13T19:11:03,321 adding 'multiqc/modules/kat/__init__.py' 2026-05-13T19:11:03,322 adding 'multiqc/modules/kat/kat.py' 2026-05-13T19:11:03,324 adding 'multiqc/modules/kraken/__init__.py' 2026-05-13T19:11:03,326 adding 'multiqc/modules/kraken/kraken.py' 2026-05-13T19:11:03,328 adding 'multiqc/modules/leehom/__init__.py' 2026-05-13T19:11:03,330 adding 'multiqc/modules/leehom/leehom.py' 2026-05-13T19:11:03,331 adding 'multiqc/modules/librarian/__init__.py' 2026-05-13T19:11:03,333 adding 'multiqc/modules/librarian/librarian.py' 2026-05-13T19:11:03,335 adding 'multiqc/modules/lima/__init__.py' 2026-05-13T19:11:03,337 adding 'multiqc/modules/lima/lima.py' 2026-05-13T19:11:03,339 adding 'multiqc/modules/longranger/__init__.py' 2026-05-13T19:11:03,341 adding 'multiqc/modules/longranger/longranger.py' 2026-05-13T19:11:03,343 adding 'multiqc/modules/macs2/__init__.py' 2026-05-13T19:11:03,344 adding 'multiqc/modules/macs2/macs2.py' 2026-05-13T19:11:03,346 adding 'multiqc/modules/malt/__init__.py' 2026-05-13T19:11:03,347 adding 'multiqc/modules/malt/malt.py' 2026-05-13T19:11:03,349 adding 'multiqc/modules/mapdamage/__init__.py' 2026-05-13T19:11:03,351 adding 'multiqc/modules/mapdamage/mapdamage.py' 2026-05-13T19:11:03,353 adding 'multiqc/modules/megahit/__init__.py' 2026-05-13T19:11:03,354 adding 'multiqc/modules/megahit/megahit.py' 2026-05-13T19:11:03,356 adding 'multiqc/modules/metaphlan/__init__.py' 2026-05-13T19:11:03,358 adding 'multiqc/modules/metaphlan/metaphlan.py' 2026-05-13T19:11:03,360 adding 'multiqc/modules/methurator/__init__.py' 2026-05-13T19:11:03,362 adding 'multiqc/modules/methurator/methurator.py' 2026-05-13T19:11:03,363 adding 'multiqc/modules/methylqa/__init__.py' 2026-05-13T19:11:03,365 adding 'multiqc/modules/methylqa/methylqa.py' 2026-05-13T19:11:03,367 adding 'multiqc/modules/mgikit/__init__.py' 2026-05-13T19:11:03,369 adding 'multiqc/modules/mgikit/mgikit.py' 2026-05-13T19:11:03,371 adding 'multiqc/modules/minionqc/__init__.py' 2026-05-13T19:11:03,373 adding 'multiqc/modules/minionqc/minionqc.py' 2026-05-13T19:11:03,374 adding 'multiqc/modules/mirtop/__init__.py' 2026-05-13T19:11:03,376 adding 'multiqc/modules/mirtop/mirtop.py' 2026-05-13T19:11:03,378 adding 'multiqc/modules/mirtrace/__init__.py' 2026-05-13T19:11:03,380 adding 'multiqc/modules/mirtrace/mirtrace.py' 2026-05-13T19:11:03,382 adding 'multiqc/modules/mosaicatcher/__init__.py' 2026-05-13T19:11:03,383 adding 'multiqc/modules/mosaicatcher/mosaicatcher.py' 2026-05-13T19:11:03,385 adding 'multiqc/modules/mosdepth/__init__.py' 2026-05-13T19:11:03,388 adding 'multiqc/modules/mosdepth/mosdepth.py' 2026-05-13T19:11:03,390 adding 'multiqc/modules/mosdepth/tests/__init__.py' 2026-05-13T19:11:03,391 adding 'multiqc/modules/mosdepth/tests/test_gen_stats.py' 2026-05-13T19:11:03,393 adding 'multiqc/modules/motus/__init__.py' 2026-05-13T19:11:03,395 adding 'multiqc/modules/motus/motus.py' 2026-05-13T19:11:03,397 adding 'multiqc/modules/mtnucratio/__init__.py' 2026-05-13T19:11:03,398 adding 'multiqc/modules/mtnucratio/mtnucratio.py' 2026-05-13T19:11:03,400 adding 'multiqc/modules/multivcfanalyzer/__init__.py' 2026-05-13T19:11:03,402 adding 'multiqc/modules/multivcfanalyzer/multivcfanalyzer.py' 2026-05-13T19:11:03,404 adding 'multiqc/modules/nanoq/__init__.py' 2026-05-13T19:11:03,406 adding 'multiqc/modules/nanoq/nanoq.py' 2026-05-13T19:11:03,407 adding 'multiqc/modules/nanostat/__init__.py' 2026-05-13T19:11:03,410 adding 'multiqc/modules/nanostat/nanostat.py' 2026-05-13T19:11:03,412 adding 'multiqc/modules/nextclade/__init__.py' 2026-05-13T19:11:03,414 adding 'multiqc/modules/nextclade/nextclade.py' 2026-05-13T19:11:03,416 adding 'multiqc/modules/ngsbits/__init__.py' 2026-05-13T19:11:03,417 adding 'multiqc/modules/ngsbits/mappingqc.py' 2026-05-13T19:11:03,419 adding 'multiqc/modules/ngsbits/ngsbits.py' 2026-05-13T19:11:03,420 adding 'multiqc/modules/ngsbits/readqc.py' 2026-05-13T19:11:03,422 adding 'multiqc/modules/ngsbits/samplegender.py' 2026-05-13T19:11:03,423 adding 'multiqc/modules/ngsbits/utils.py' 2026-05-13T19:11:03,425 adding 'multiqc/modules/ngsderive/__init__.py' 2026-05-13T19:11:03,427 adding 'multiqc/modules/ngsderive/ngsderive.py' 2026-05-13T19:11:03,429 adding 'multiqc/modules/nonpareil/__init__.py' 2026-05-13T19:11:03,431 adding 'multiqc/modules/nonpareil/nonpareil.py' 2026-05-13T19:11:03,433 adding 'multiqc/modules/odgi/__init__.py' 2026-05-13T19:11:03,435 adding 'multiqc/modules/odgi/odgi.py' 2026-05-13T19:11:03,436 adding 'multiqc/modules/optitype/__init__.py' 2026-05-13T19:11:03,438 adding 'multiqc/modules/optitype/optitype.py' 2026-05-13T19:11:03,440 adding 'multiqc/modules/pairtools/__init__.py' 2026-05-13T19:11:03,442 adding 'multiqc/modules/pairtools/pairtools.py' 2026-05-13T19:11:03,443 adding 'multiqc/modules/pairtools/params.yml' 2026-05-13T19:11:03,445 adding 'multiqc/modules/pairtools/utils.py' 2026-05-13T19:11:03,447 adding 'multiqc/modules/pangolin/__init__.py' 2026-05-13T19:11:03,449 adding 'multiqc/modules/pangolin/pangolin.py' 2026-05-13T19:11:03,450 adding 'multiqc/modules/pbmarkdup/__init__.py' 2026-05-13T19:11:03,452 adding 'multiqc/modules/pbmarkdup/pbmarkdup.py' 2026-05-13T19:11:03,453 adding 'multiqc/modules/peddy/__init__.py' 2026-05-13T19:11:03,455 adding 'multiqc/modules/peddy/peddy.py' 2026-05-13T19:11:03,457 adding 'multiqc/modules/percolator/__init__.py' 2026-05-13T19:11:03,459 adding 'multiqc/modules/percolator/percolator.py' 2026-05-13T19:11:03,460 adding 'multiqc/modules/phantompeakqualtools/__init__.py' 2026-05-13T19:11:03,462 adding 'multiqc/modules/phantompeakqualtools/phantompeakqualtools.py' 2026-05-13T19:11:03,465 adding 'multiqc/modules/picard/AlignmentSummaryMetrics.py' 2026-05-13T19:11:03,466 adding 'multiqc/modules/picard/BaseDistributionByCycleMetrics.py' 2026-05-13T19:11:03,468 adding 'multiqc/modules/picard/CrosscheckFingerprints.py' 2026-05-13T19:11:03,470 adding 'multiqc/modules/picard/ExtractIlluminaBarcodes.py' 2026-05-13T19:11:03,472 adding 'multiqc/modules/picard/GcBiasMetrics.py' 2026-05-13T19:11:03,474 adding 'multiqc/modules/picard/HsMetrics.py' 2026-05-13T19:11:03,476 adding 'multiqc/modules/picard/IlluminaBasecallingMetrics.py' 2026-05-13T19:11:03,478 adding 'multiqc/modules/picard/IlluminaLaneMetrics.py' 2026-05-13T19:11:03,480 adding 'multiqc/modules/picard/InsertSizeMetrics.py' 2026-05-13T19:11:03,482 adding 'multiqc/modules/picard/MarkDuplicates.py' 2026-05-13T19:11:03,484 adding 'multiqc/modules/picard/MarkIlluminaAdapters.py' 2026-05-13T19:11:03,485 adding 'multiqc/modules/picard/OxoGMetrics.py' 2026-05-13T19:11:03,487 adding 'multiqc/modules/picard/QualityByCycleMetrics.py' 2026-05-13T19:11:03,488 adding 'multiqc/modules/picard/QualityScoreDistributionMetrics.py' 2026-05-13T19:11:03,489 adding 'multiqc/modules/picard/QualityYieldMetrics.py' 2026-05-13T19:11:03,491 adding 'multiqc/modules/picard/RnaSeqMetrics.py' 2026-05-13T19:11:03,493 adding 'multiqc/modules/picard/RrbsSummaryMetrics.py' 2026-05-13T19:11:03,494 adding 'multiqc/modules/picard/TargetedPcrMetrics.py' 2026-05-13T19:11:03,497 adding 'multiqc/modules/picard/ValidateSamFile.py' 2026-05-13T19:11:03,499 adding 'multiqc/modules/picard/VariantCallingMetrics.py' 2026-05-13T19:11:03,501 adding 'multiqc/modules/picard/WgsMetrics.py' 2026-05-13T19:11:03,502 adding 'multiqc/modules/picard/__init__.py' 2026-05-13T19:11:03,504 adding 'multiqc/modules/picard/picard.py' 2026-05-13T19:11:03,506 adding 'multiqc/modules/picard/util.py' 2026-05-13T19:11:03,508 adding 'multiqc/modules/picard/tests/__init__.py' 2026-05-13T19:11:03,509 adding 'multiqc/modules/picard/tests/test_picard.py' 2026-05-13T19:11:03,511 adding 'multiqc/modules/porechop/__init__.py' 2026-05-13T19:11:03,513 adding 'multiqc/modules/porechop/porechop.py' 2026-05-13T19:11:03,514 adding 'multiqc/modules/preseq/__init__.py' 2026-05-13T19:11:03,517 adding 'multiqc/modules/preseq/preseq.py' 2026-05-13T19:11:03,519 adding 'multiqc/modules/prinseqplusplus/__init__.py' 2026-05-13T19:11:03,520 adding 'multiqc/modules/prinseqplusplus/prinseqplusplus.py' 2026-05-13T19:11:03,522 adding 'multiqc/modules/prokka/__init__.py' 2026-05-13T19:11:03,524 adding 'multiqc/modules/prokka/prokka.py' 2026-05-13T19:11:03,525 adding 'multiqc/modules/purple/__init__.py' 2026-05-13T19:11:03,527 adding 'multiqc/modules/purple/purple.py' 2026-05-13T19:11:03,529 adding 'multiqc/modules/pychopper/__init__.py' 2026-05-13T19:11:03,530 adding 'multiqc/modules/pychopper/pychopper.py' 2026-05-13T19:11:03,532 adding 'multiqc/modules/pycoqc/__init__.py' 2026-05-13T19:11:03,534 adding 'multiqc/modules/pycoqc/pycoqc.py' 2026-05-13T19:11:03,536 adding 'multiqc/modules/qc3C/__init__.py' 2026-05-13T19:11:03,540 adding 'multiqc/modules/qc3C/qc3C.py' 2026-05-13T19:11:03,542 adding 'multiqc/modules/qorts/__init__.py' 2026-05-13T19:11:03,544 adding 'multiqc/modules/qorts/qorts.py' 2026-05-13T19:11:03,548 adding 'multiqc/modules/qualimap/QM_BamQC.py' 2026-05-13T19:11:03,550 adding 'multiqc/modules/qualimap/QM_RNASeq.py' 2026-05-13T19:11:03,552 adding 'multiqc/modules/qualimap/__init__.py' 2026-05-13T19:11:03,553 adding 'multiqc/modules/qualimap/qualimap.py' 2026-05-13T19:11:03,555 adding 'multiqc/modules/quast/__init__.py' 2026-05-13T19:11:03,557 adding 'multiqc/modules/quast/quast.py' 2026-05-13T19:11:03,559 adding 'multiqc/modules/ribotish/__init__.py' 2026-05-13T19:11:03,561 adding 'multiqc/modules/ribotish/ribotish.py' 2026-05-13T19:11:03,563 adding 'multiqc/modules/ribotish/tests/__init__.py' 2026-05-13T19:11:03,564 adding 'multiqc/modules/ribotish/tests/test_ribotish.py' 2026-05-13T19:11:03,566 adding 'multiqc/modules/ribowaltz/__init__.py' 2026-05-13T19:11:03,568 adding 'multiqc/modules/ribowaltz/ribowaltz.py' 2026-05-13T19:11:03,570 adding 'multiqc/modules/riker/__init__.py' 2026-05-13T19:11:03,572 adding 'multiqc/modules/riker/alignment.py' 2026-05-13T19:11:03,573 adding 'multiqc/modules/riker/basic.py' 2026-05-13T19:11:03,575 adding 'multiqc/modules/riker/gcbias.py' 2026-05-13T19:11:03,577 adding 'multiqc/modules/riker/hybcap.py' 2026-05-13T19:11:03,579 adding 'multiqc/modules/riker/isize.py' 2026-05-13T19:11:03,581 adding 'multiqc/modules/riker/riker.py' 2026-05-13T19:11:03,582 adding 'multiqc/modules/riker/util.py' 2026-05-13T19:11:03,584 adding 'multiqc/modules/riker/wgs.py' 2026-05-13T19:11:03,586 adding 'multiqc/modules/riker/tests/__init__.py' 2026-05-13T19:11:03,588 adding 'multiqc/modules/riker/tests/test_riker.py' 2026-05-13T19:11:03,589 adding 'multiqc/modules/rna_seqc/__init__.py' 2026-05-13T19:11:03,591 adding 'multiqc/modules/rna_seqc/rna_seqc.py' 2026-05-13T19:11:03,593 adding 'multiqc/modules/rockhopper/__init__.py' 2026-05-13T19:11:03,595 adding 'multiqc/modules/rockhopper/rockhopper.py' 2026-05-13T19:11:03,596 adding 'multiqc/modules/rsem/__init__.py' 2026-05-13T19:11:03,598 adding 'multiqc/modules/rsem/rsem.py' 2026-05-13T19:11:03,600 adding 'multiqc/modules/rseqc/__init__.py' 2026-05-13T19:11:03,602 adding 'multiqc/modules/rseqc/bam_stat.py' 2026-05-13T19:11:03,603 adding 'multiqc/modules/rseqc/gene_body_coverage.py' 2026-05-13T19:11:03,605 adding 'multiqc/modules/rseqc/infer_experiment.py' 2026-05-13T19:11:03,606 adding 'multiqc/modules/rseqc/inner_distance.py' 2026-05-13T19:11:03,607 adding 'multiqc/modules/rseqc/junction_annotation.py' 2026-05-13T19:11:03,609 adding 'multiqc/modules/rseqc/junction_saturation.py' 2026-05-13T19:11:03,610 adding 'multiqc/modules/rseqc/read_distribution.py' 2026-05-13T19:11:03,612 adding 'multiqc/modules/rseqc/read_duplication.py' 2026-05-13T19:11:03,613 adding 'multiqc/modules/rseqc/read_gc.py' 2026-05-13T19:11:03,615 adding 'multiqc/modules/rseqc/rseqc.py' 2026-05-13T19:11:03,616 adding 'multiqc/modules/rseqc/tin.py' 2026-05-13T19:11:03,618 adding 'multiqc/modules/salmon/__init__.py' 2026-05-13T19:11:03,620 adding 'multiqc/modules/salmon/salmon.py' 2026-05-13T19:11:03,622 adding 'multiqc/modules/sambamba/__init__.py' 2026-05-13T19:11:03,624 adding 'multiqc/modules/sambamba/markdup.py' 2026-05-13T19:11:03,625 adding 'multiqc/modules/sambamba/sambamba.py' 2026-05-13T19:11:03,626 adding 'multiqc/modules/samblaster/__init__.py' 2026-05-13T19:11:03,628 adding 'multiqc/modules/samblaster/samblaster.py' 2026-05-13T19:11:03,630 adding 'multiqc/modules/samtools/__init__.py' 2026-05-13T19:11:03,631 adding 'multiqc/modules/samtools/ampliconclip.py' 2026-05-13T19:11:03,633 adding 'multiqc/modules/samtools/coverage.py' 2026-05-13T19:11:03,635 adding 'multiqc/modules/samtools/flagstat.py' 2026-05-13T19:11:03,637 adding 'multiqc/modules/samtools/idxstats.py' 2026-05-13T19:11:03,638 adding 'multiqc/modules/samtools/markdup.py' 2026-05-13T19:11:03,640 adding 'multiqc/modules/samtools/rmdup.py' 2026-05-13T19:11:03,641 adding 'multiqc/modules/samtools/samtools.py' 2026-05-13T19:11:03,643 adding 'multiqc/modules/samtools/stats.py' 2026-05-13T19:11:03,645 adding 'multiqc/modules/samtools/tests/__init__.py' 2026-05-13T19:11:03,646 adding 'multiqc/modules/samtools/tests/test_coverage.py' 2026-05-13T19:11:03,648 adding 'multiqc/modules/samtools/tests/test_flagstat.py' 2026-05-13T19:11:03,649 adding 'multiqc/modules/sargasso/__init__.py' 2026-05-13T19:11:03,651 adding 'multiqc/modules/sargasso/sargasso.py' 2026-05-13T19:11:03,652 adding 'multiqc/modules/seqera_cli/__init__.py' 2026-05-13T19:11:03,654 adding 'multiqc/modules/seqera_cli/seqera_cli.py' 2026-05-13T19:11:03,656 adding 'multiqc/modules/seqfu/__init__.py' 2026-05-13T19:11:03,657 adding 'multiqc/modules/seqfu/seqfu.py' 2026-05-13T19:11:03,659 adding 'multiqc/modules/seqfu/stats.py' 2026-05-13T19:11:03,661 adding 'multiqc/modules/seqfu/test/test_stats.py' 2026-05-13T19:11:03,663 adding 'multiqc/modules/seqkit/__init__.py' 2026-05-13T19:11:03,664 adding 'multiqc/modules/seqkit/seqkit.py' 2026-05-13T19:11:03,666 adding 'multiqc/modules/seqkit/stats.py' 2026-05-13T19:11:03,667 adding 'multiqc/modules/seqkit/tests/__init__.py' 2026-05-13T19:11:03,669 adding 'multiqc/modules/seqkit/tests/test_stats.py' 2026-05-13T19:11:03,670 adding 'multiqc/modules/sequali/__init__.py' 2026-05-13T19:11:03,674 adding 'multiqc/modules/sequali/sequali.py' 2026-05-13T19:11:03,676 adding 'multiqc/modules/seqwho/__init__.py' 2026-05-13T19:11:03,678 adding 'multiqc/modules/seqwho/seqwho.py' 2026-05-13T19:11:03,680 adding 'multiqc/modules/seqyclean/__init__.py' 2026-05-13T19:11:03,681 adding 'multiqc/modules/seqyclean/seqyclean.py' 2026-05-13T19:11:03,683 adding 'multiqc/modules/sexdeterrmine/__init__.py' 2026-05-13T19:11:03,685 adding 'multiqc/modules/sexdeterrmine/sexdeterrmine.py' 2026-05-13T19:11:03,686 adding 'multiqc/modules/sickle/__init__.py' 2026-05-13T19:11:03,688 adding 'multiqc/modules/sickle/sickle.py' 2026-05-13T19:11:03,690 adding 'multiqc/modules/sincei/__init__.py' 2026-05-13T19:11:03,691 adding 'multiqc/modules/sincei/_helpers.py' 2026-05-13T19:11:03,692 adding 'multiqc/modules/sincei/scCountQC.py' 2026-05-13T19:11:03,694 adding 'multiqc/modules/sincei/scFilterStats.py' 2026-05-13T19:11:03,696 adding 'multiqc/modules/sincei/sincei.py' 2026-05-13T19:11:03,697 adding 'multiqc/modules/skewer/__init__.py' 2026-05-13T19:11:03,699 adding 'multiqc/modules/skewer/skewer.py' 2026-05-13T19:11:03,701 adding 'multiqc/modules/slamdunk/__init__.py' 2026-05-13T19:11:03,703 adding 'multiqc/modules/slamdunk/slamdunk.py' 2026-05-13T19:11:03,705 adding 'multiqc/modules/snippy/__init__.py' 2026-05-13T19:11:03,707 adding 'multiqc/modules/snippy/snippy.py' 2026-05-13T19:11:03,709 adding 'multiqc/modules/snpeff/__init__.py' 2026-05-13T19:11:03,711 adding 'multiqc/modules/snpeff/snpeff.py' 2026-05-13T19:11:03,712 adding 'multiqc/modules/snpsplit/__init__.py' 2026-05-13T19:11:03,714 adding 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'multiqc/templates/original/assets/js/packages/FileSaver.min.js' 2026-05-13T19:11:04,474 adding 'multiqc/templates/original/assets/js/packages/bootstrap.min.js' 2026-05-13T19:11:04,486 adding 'multiqc/templates/original/assets/js/packages/jquery-3.1.1.min.js' 2026-05-13T19:11:04,491 adding 'multiqc/templates/original/assets/js/packages/jquery-ui.min.js' 2026-05-13T19:11:04,496 adding 'multiqc/templates/original/assets/js/packages/jquery.tablesorter.min.js' 2026-05-13T19:11:04,498 adding 'multiqc/templates/original/assets/js/packages/jquery.toast.min.js' 2026-05-13T19:11:04,510 adding 'multiqc/templates/original/assets/js/packages/jszip.min.js' 2026-05-13T19:11:04,513 adding 'multiqc/templates/original/assets/js/packages/pako_inflate.min.js' 2026-05-13T19:11:05,503 adding 'multiqc/templates/original/assets/js/packages/plotly-2.27.0.js' 2026-05-13T19:11:05,987 adding 'multiqc/templates/original/assets/js/packages/plotly-2.27.0.min.js' 2026-05-13T19:11:06,018 adding 'multiqc/templates/original/assets/js/packages/showdown.min.js' 2026-05-13T19:11:06,021 adding 'multiqc/templates/original/assets/js/plots/bar.js' 2026-05-13T19:11:06,023 adding 'multiqc/templates/original/assets/js/plots/box.js' 2026-05-13T19:11:06,025 adding 'multiqc/templates/original/assets/js/plots/heatmap.js' 2026-05-13T19:11:06,026 adding 'multiqc/templates/original/assets/js/plots/line.js' 2026-05-13T19:11:06,028 adding 'multiqc/templates/original/assets/js/plots/scatter.js' 2026-05-13T19:11:06,030 adding 'multiqc/templates/original/assets/js/plots/violin.js' 2026-05-13T19:11:06,032 adding 'multiqc/templates/sections/__init__.py' 2026-05-13T19:11:06,034 adding 'multiqc/templates/sections/content.html' 2026-05-13T19:11:06,036 adding 'multiqc/templates/simple/__init__.py' 2026-05-13T19:11:06,037 adding 'multiqc/templates/simple/foot.html' 2026-05-13T19:11:06,038 adding 'multiqc/templates/simple/footer.html' 2026-05-13T19:11:06,039 adding 'multiqc/templates/simple/header.html' 2026-05-13T19:11:06,041 adding 'multiqc/templates/simple/includes.html' 2026-05-13T19:11:06,042 adding 'multiqc/templates/simple/nav.html' 2026-05-13T19:11:06,043 adding 'multiqc/templates/simple/toolbox.html' 2026-05-13T19:11:06,045 adding 'multiqc/utils/__init__.py' 2026-05-13T19:11:06,046 adding 'multiqc/utils/config.py' 2026-05-13T19:11:06,052 adding 'multiqc/utils/config_schema.json' 2026-05-13T19:11:06,057 adding 'multiqc/utils/config_schema.py' 2026-05-13T19:11:06,059 adding 'multiqc/utils/material_icons.py' 2026-05-13T19:11:06,060 adding 'multiqc/utils/megaqc.py' 2026-05-13T19:11:06,063 adding 'multiqc/utils/mqc_colour.py' 2026-05-13T19:11:06,065 adding 'multiqc/utils/pyaml_env.py' 2026-05-13T19:11:06,066 adding 'multiqc/utils/report.py' 2026-05-13T19:11:06,067 adding 'multiqc/utils/testing.py' 2026-05-13T19:11:06,070 adding 'multiqc/utils/util_functions.py' 2026-05-13T19:11:06,073 adding 'multiqc/utils/material_icons/LICENSE' 2026-05-13T19:11:06,074 adding 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2026-05-13T19:11:06,148 adding 'multiqc/utils/material_icons/mdi-sort.svg' 2026-05-13T19:11:06,149 adding 'multiqc/utils/material_icons/mdi-star.svg' 2026-05-13T19:11:06,150 adding 'multiqc/utils/material_icons/mdi-table.svg' 2026-05-13T19:11:06,151 adding 'multiqc/utils/material_icons/mdi-thumb-down.svg' 2026-05-13T19:11:06,152 adding 'multiqc/utils/material_icons/mdi-thumb-up.svg' 2026-05-13T19:11:06,154 adding 'multiqc/utils/material_icons/mdi-view-column.svg' 2026-05-13T19:11:06,155 adding 'multiqc/utils/material_icons/mdi-view-dashboard.svg' 2026-05-13T19:11:06,156 adding 'multiqc/utils/material_icons/mdi-violin.svg' 2026-05-13T19:11:06,157 adding 'multiqc/utils/material_icons/mdi-warning.svg' 2026-05-13T19:11:06,158 adding 'multiqc/utils/material_icons/mdi-weather-night.svg' 2026-05-13T19:11:06,160 adding 'multiqc/utils/material_icons/mdi-weather-sunny.svg' 2026-05-13T19:11:06,161 adding 'multiqc/utils/material_icons/mdi-youtube.svg' 2026-05-13T19:11:06,168 adding 'multiqc-1.35.dist-info/licenses/LICENSE' 2026-05-13T19:11:06,175 adding 'multiqc-1.35.dist-info/METADATA' 2026-05-13T19:11:06,176 adding 'multiqc-1.35.dist-info/WHEEL' 2026-05-13T19:11:06,178 adding 'multiqc-1.35.dist-info/entry_points.txt' 2026-05-13T19:11:06,179 adding 'multiqc-1.35.dist-info/top_level.txt' 2026-05-13T19:11:06,192 adding 'multiqc-1.35.dist-info/RECORD' 2026-05-13T19:11:06,271 removing build/bdist.linux-armv7l/wheel 2026-05-13T19:11:06,658 Building wheel for multiqc (pyproject.toml): finished with status 'done' 2026-05-13T19:11:06,787 Created wheel for multiqc: filename=multiqc-1.35-py3-none-any.whl size=5779740 sha256=6abf16d5da9adfa309e8430f0b6d1ed8e939899f330a0603ee84d8fea74c885c 2026-05-13T19:11:06,789 Stored in directory: /tmp/pip-ephem-wheel-cache-vc8gnz8e/wheels/b9/08/b3/207d0f525bf11aee37999aaf9136927e58c4c6a2383b5cb720 2026-05-13T19:11:06,848 Successfully built multiqc 2026-05-13T19:11:06,987 Removed build tracker: '/tmp/pip-build-tracker-hlae6wuj'