2026-05-14T01:46:38,382 Created temporary directory: /tmp/pip-ephem-wheel-cache-05vmhijk 2026-05-14T01:46:38,383 Created temporary directory: /tmp/pip-build-tracker-p8xag322 2026-05-14T01:46:38,384 Initialized build tracking at /tmp/pip-build-tracker-p8xag322 2026-05-14T01:46:38,385 Created build tracker: /tmp/pip-build-tracker-p8xag322 2026-05-14T01:46:38,385 Entered build tracker: /tmp/pip-build-tracker-p8xag322 2026-05-14T01:46:38,386 Created temporary directory: /tmp/pip-wheel-i1leavkr 2026-05-14T01:46:38,389 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-14T01:46:38,391 Created temporary directory: /tmp/pip-ephem-wheel-cache-lr6m79xb 2026-05-14T01:46:38,413 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-14T01:46:38,417 2 location(s) to search for versions of varcode: 2026-05-14T01:46:38,417 * https://pypi.org/simple/varcode/ 2026-05-14T01:46:38,417 * https://www.piwheels.org/simple/varcode/ 2026-05-14T01:46:38,418 Fetching project page and analyzing links: https://pypi.org/simple/varcode/ 2026-05-14T01:46:38,418 Getting page https://pypi.org/simple/varcode/ 2026-05-14T01:46:38,420 Found index url https://pypi.org/simple 2026-05-14T01:46:38,670 Fetched page https://pypi.org/simple/varcode/ as application/vnd.pypi.simple.v1+json 2026-05-14T01:46:38,700 Found link https://files.pythonhosted.org/packages/77/c8/f88b644d2ebbc1bf72dd5d1609c2e399e14e41c90b4b364ef3968e304b68/varcode-0.0.0.tar.gz (from 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https://pypi.org/simple/varcode/ 2026-05-14T01:46:39,295 Given no hashes to check 1 links for project 'varcode': discarding no candidates 2026-05-14T01:46:39,313 Collecting varcode==4.22.1 2026-05-14T01:46:39,316 Created temporary directory: /tmp/pip-unpack-6jmecqxi 2026-05-14T01:46:39,545 Downloading varcode-4.22.1.tar.gz (328 kB) 2026-05-14T01:46:39,982 Added varcode==4.22.1 from https://files.pythonhosted.org/packages/0e/30/e14342d0656021b1ea0a018566c4a848b61affac15765e411badd3cc54b1/varcode-4.22.1.tar.gz to build tracker '/tmp/pip-build-tracker-p8xag322' 2026-05-14T01:46:39,987 Created temporary directory: /tmp/pip-build-env-f9plol51 2026-05-14T01:46:39,992 Installing build dependencies: started 2026-05-14T01:46:39,993 Running command pip subprocess to install build dependencies 2026-05-14T01:46:41,141 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-14T01:46:41,583 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-14T01:46:41,608 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-14T01:46:43,399 Collecting setuptools>=64 2026-05-14T01:46:43,400 Obtaining dependency information for setuptools>=64 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-14T01:46:43,416 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-14T01:46:43,664 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-14T01:46:43,759 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-14T01:46:46,481 Installing collected packages: setuptools 2026-05-14T01:46:49,566 Successfully installed setuptools-82.0.1 2026-05-14T01:46:49,834 Installing build dependencies: finished with status 'done' 2026-05-14T01:46:49,840 Getting requirements to build wheel: started 2026-05-14T01:46:49,842 Running command Getting requirements to build wheel 2026-05-14T01:46:50,575 /tmp/pip-build-env-f9plol51/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T01:46:50,575 !! 2026-05-14T01:46:50,576 ******************************************************************************** 2026-05-14T01:46:50,577 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T01:46:50,578 License :: OSI Approved :: Apache Software License 2026-05-14T01:46:50,579 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T01:46:50,579 ******************************************************************************** 2026-05-14T01:46:50,581 !! 2026-05-14T01:46:50,581 dist._finalize_license_expression() 2026-05-14T01:46:50,582 /tmp/pip-build-env-f9plol51/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T01:46:50,582 !! 2026-05-14T01:46:50,583 ******************************************************************************** 2026-05-14T01:46:50,583 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T01:46:50,584 License :: OSI Approved :: Apache Software License 2026-05-14T01:46:50,585 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T01:46:50,586 ******************************************************************************** 2026-05-14T01:46:50,587 !! 2026-05-14T01:46:50,587 self._finalize_license_expression() 2026-05-14T01:46:50,588 running egg_info 2026-05-14T01:46:50,591 writing varcode.egg-info/PKG-INFO 2026-05-14T01:46:50,595 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-05-14T01:46:50,597 writing entry points to varcode.egg-info/entry_points.txt 2026-05-14T01:46:50,599 writing requirements to varcode.egg-info/requires.txt 2026-05-14T01:46:50,600 writing top-level names to varcode.egg-info/top_level.txt 2026-05-14T01:46:50,628 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-05-14T01:46:50,636 reading manifest template 'MANIFEST.in' 2026-05-14T01:46:50,637 adding license file 'LICENSE' 2026-05-14T01:46:50,645 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-05-14T01:46:50,742 Getting requirements to build wheel: finished with status 'done' 2026-05-14T01:46:50,746 Created temporary directory: /tmp/pip-modern-metadata-ejs9v5y1 2026-05-14T01:46:50,748 Preparing metadata (pyproject.toml): started 2026-05-14T01:46:50,749 Running command Preparing metadata (pyproject.toml) 2026-05-14T01:46:51,396 /tmp/pip-build-env-f9plol51/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T01:46:51,396 !! 2026-05-14T01:46:51,397 ******************************************************************************** 2026-05-14T01:46:51,398 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T01:46:51,399 License :: OSI Approved :: Apache Software License 2026-05-14T01:46:51,400 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T01:46:51,401 ******************************************************************************** 2026-05-14T01:46:51,402 !! 2026-05-14T01:46:51,402 dist._finalize_license_expression() 2026-05-14T01:46:51,403 /tmp/pip-build-env-f9plol51/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T01:46:51,404 !! 2026-05-14T01:46:51,405 ******************************************************************************** 2026-05-14T01:46:51,405 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T01:46:51,407 License :: OSI Approved :: Apache Software License 2026-05-14T01:46:51,408 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T01:46:51,408 ******************************************************************************** 2026-05-14T01:46:51,409 !! 2026-05-14T01:46:51,409 self._finalize_license_expression() 2026-05-14T01:46:51,410 running dist_info 2026-05-14T01:46:51,418 creating /tmp/pip-modern-metadata-ejs9v5y1/varcode.egg-info 2026-05-14T01:46:51,419 writing /tmp/pip-modern-metadata-ejs9v5y1/varcode.egg-info/PKG-INFO 2026-05-14T01:46:51,423 writing dependency_links to /tmp/pip-modern-metadata-ejs9v5y1/varcode.egg-info/dependency_links.txt 2026-05-14T01:46:51,425 writing entry points to /tmp/pip-modern-metadata-ejs9v5y1/varcode.egg-info/entry_points.txt 2026-05-14T01:46:51,426 writing requirements to /tmp/pip-modern-metadata-ejs9v5y1/varcode.egg-info/requires.txt 2026-05-14T01:46:51,427 writing top-level names to /tmp/pip-modern-metadata-ejs9v5y1/varcode.egg-info/top_level.txt 2026-05-14T01:46:51,428 writing manifest file '/tmp/pip-modern-metadata-ejs9v5y1/varcode.egg-info/SOURCES.txt' 2026-05-14T01:46:51,453 reading manifest file '/tmp/pip-modern-metadata-ejs9v5y1/varcode.egg-info/SOURCES.txt' 2026-05-14T01:46:51,455 reading manifest template 'MANIFEST.in' 2026-05-14T01:46:51,455 adding license file 'LICENSE' 2026-05-14T01:46:51,461 writing manifest file '/tmp/pip-modern-metadata-ejs9v5y1/varcode.egg-info/SOURCES.txt' 2026-05-14T01:46:51,463 creating '/tmp/pip-modern-metadata-ejs9v5y1/varcode-4.22.1.dist-info' 2026-05-14T01:46:51,588 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-14T01:46:51,593 Source in /tmp/pip-wheel-i1leavkr/varcode_d881586deaeb4962ba45cc42297ba590 has version 4.22.1, which satisfies requirement varcode==4.22.1 from https://files.pythonhosted.org/packages/0e/30/e14342d0656021b1ea0a018566c4a848b61affac15765e411badd3cc54b1/varcode-4.22.1.tar.gz 2026-05-14T01:46:51,594 Removed varcode==4.22.1 from https://files.pythonhosted.org/packages/0e/30/e14342d0656021b1ea0a018566c4a848b61affac15765e411badd3cc54b1/varcode-4.22.1.tar.gz from build tracker '/tmp/pip-build-tracker-p8xag322' 2026-05-14T01:46:51,600 Created temporary directory: /tmp/pip-unpack-2789xter 2026-05-14T01:46:51,601 Building wheels for collected packages: varcode 2026-05-14T01:46:51,606 Created temporary directory: /tmp/pip-wheel-7yoflsvu 2026-05-14T01:46:51,606 Destination directory: /tmp/pip-wheel-7yoflsvu 2026-05-14T01:46:51,608 Building wheel for varcode (pyproject.toml): started 2026-05-14T01:46:51,610 Running command Building wheel for varcode (pyproject.toml) 2026-05-14T01:46:52,234 /tmp/pip-build-env-f9plol51/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T01:46:52,235 !! 2026-05-14T01:46:52,236 ******************************************************************************** 2026-05-14T01:46:52,236 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T01:46:52,237 License :: OSI Approved :: Apache Software License 2026-05-14T01:46:52,239 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T01:46:52,239 ******************************************************************************** 2026-05-14T01:46:52,240 !! 2026-05-14T01:46:52,241 dist._finalize_license_expression() 2026-05-14T01:46:52,242 /tmp/pip-build-env-f9plol51/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T01:46:52,242 !! 2026-05-14T01:46:52,243 ******************************************************************************** 2026-05-14T01:46:52,244 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T01:46:52,245 License :: OSI Approved :: Apache Software License 2026-05-14T01:46:52,245 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T01:46:52,246 ******************************************************************************** 2026-05-14T01:46:52,247 !! 2026-05-14T01:46:52,247 self._finalize_license_expression() 2026-05-14T01:46:52,248 running bdist_wheel 2026-05-14T01:46:52,260 running build 2026-05-14T01:46:52,260 running build_py 2026-05-14T01:46:52,267 creating build/lib/varcode 2026-05-14T01:46:52,269 copying varcode/outcomes.py -> build/lib/varcode 2026-05-14T01:46:52,272 copying varcode/util.py -> build/lib/varcode 2026-05-14T01:46:52,274 copying varcode/cryptic_exons.py -> build/lib/varcode 2026-05-14T01:46:52,276 copying varcode/structural_variant.py -> build/lib/varcode 2026-05-14T01:46:52,279 copying varcode/splice_outcomes.py -> build/lib/varcode 2026-05-14T01:46:52,282 copying varcode/vcf_parsing.py -> build/lib/varcode 2026-05-14T01:46:52,284 copying varcode/variant.py -> build/lib/varcode 2026-05-14T01:46:52,287 copying varcode/version.py -> build/lib/varcode 2026-05-14T01:46:52,288 copying varcode/germline.py -> build/lib/varcode 2026-05-14T01:46:52,291 copying varcode/variant_collection.py -> build/lib/varcode 2026-05-14T01:46:52,294 copying varcode/vcf.py -> build/lib/varcode 2026-05-14T01:46:52,297 copying varcode/string_helpers.py -> build/lib/varcode 2026-05-14T01:46:52,300 copying varcode/genome_sequence.py -> build/lib/varcode 2026-05-14T01:46:52,303 copying varcode/reference.py -> build/lib/varcode 2026-05-14T01:46:52,305 copying varcode/sv_allele_parser.py -> build/lib/varcode 2026-05-14T01:46:52,307 copying varcode/rna_evidence.py -> build/lib/varcode 2026-05-14T01:46:52,310 copying varcode/phasing.py -> build/lib/varcode 2026-05-14T01:46:52,312 copying varcode/genome.py -> build/lib/varcode 2026-05-14T01:46:52,315 copying varcode/genotype.py -> build/lib/varcode 2026-05-14T01:46:52,317 copying varcode/vcf_output.py -> build/lib/varcode 2026-05-14T01:46:52,319 copying varcode/common.py -> build/lib/varcode 2026-05-14T01:46:52,321 copying varcode/ucsc_reference_names.py -> build/lib/varcode 2026-05-14T01:46:52,323 copying varcode/errors.py -> build/lib/varcode 2026-05-14T01:46:52,325 copying varcode/nucleotides.py -> build/lib/varcode 2026-05-14T01:46:52,327 copying varcode/__init__.py -> build/lib/varcode 2026-05-14T01:46:52,329 copying varcode/maf.py -> build/lib/varcode 2026-05-14T01:46:52,331 copying varcode/csv_helpers.py -> build/lib/varcode 2026-05-14T01:46:52,333 copying varcode/mutant_transcript.py -> build/lib/varcode 2026-05-14T01:46:52,336 creating build/lib/varcode/annotators 2026-05-14T01:46:52,337 copying varcode/annotators/structural_variant.py -> build/lib/varcode/annotators 2026-05-14T01:46:52,340 copying varcode/annotators/protein_diff.py -> build/lib/varcode/annotators 2026-05-14T01:46:52,343 copying varcode/annotators/registry.py -> build/lib/varcode/annotators 2026-05-14T01:46:52,345 copying varcode/annotators/fast.py -> build/lib/varcode/annotators 2026-05-14T01:46:52,347 copying varcode/annotators/__init__.py -> build/lib/varcode/annotators 2026-05-14T01:46:52,350 creating build/lib/varcode/effects 2026-05-14T01:46:52,352 copying varcode/effects/effect_collection.py -> build/lib/varcode/effects 2026-05-14T01:46:52,355 copying varcode/effects/effect_prediction_coding_frameshift.py -> build/lib/varcode/effects 2026-05-14T01:46:52,357 copying varcode/effects/effect_prediction_coding_in_frame.py -> build/lib/varcode/effects 2026-05-14T01:46:52,359 copying varcode/effects/effect_helpers.py -> build/lib/varcode/effects 2026-05-14T01:46:52,362 copying varcode/effects/classify.py -> build/lib/varcode/effects 2026-05-14T01:46:52,364 copying varcode/effects/effect_prediction.py -> build/lib/varcode/effects 2026-05-14T01:46:52,367 copying varcode/effects/fast_path.py -> build/lib/varcode/effects 2026-05-14T01:46:52,369 copying varcode/effects/common.py -> build/lib/varcode/effects 2026-05-14T01:46:52,370 copying varcode/effects/transcript_helpers.py -> build/lib/varcode/effects 2026-05-14T01:46:52,372 copying varcode/effects/codon_tables.py -> build/lib/varcode/effects 2026-05-14T01:46:52,375 copying varcode/effects/translate.py -> build/lib/varcode/effects 2026-05-14T01:46:52,377 copying varcode/effects/__init__.py -> build/lib/varcode/effects 2026-05-14T01:46:52,379 copying varcode/effects/mutate.py -> build/lib/varcode/effects 2026-05-14T01:46:52,381 copying varcode/effects/effect_classes.py -> build/lib/varcode/effects 2026-05-14T01:46:52,384 copying varcode/effects/effect_prediction_coding.py -> build/lib/varcode/effects 2026-05-14T01:46:52,386 copying varcode/effects/effect_ordering.py -> build/lib/varcode/effects 2026-05-14T01:46:52,389 creating build/lib/varcode/transforms 2026-05-14T01:46:52,390 copying varcode/transforms/__init__.py -> build/lib/varcode/transforms 2026-05-14T01:46:52,394 creating build/lib/varcode/cli 2026-05-14T01:46:52,395 copying varcode/cli/genes_script.py -> build/lib/varcode/cli 2026-05-14T01:46:52,397 copying varcode/cli/effects_script.py -> build/lib/varcode/cli 2026-05-14T01:46:52,399 copying varcode/cli/__init__.py -> build/lib/varcode/cli 2026-05-14T01:46:52,401 copying varcode/cli/variant_args.py -> build/lib/varcode/cli 2026-05-14T01:46:52,403 copying varcode/cli/version_info.py -> build/lib/varcode/cli 2026-05-14T01:46:52,404 running egg_info 2026-05-14T01:46:52,414 writing varcode.egg-info/PKG-INFO 2026-05-14T01:46:52,417 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-05-14T01:46:52,418 writing entry points to varcode.egg-info/entry_points.txt 2026-05-14T01:46:52,420 writing requirements to varcode.egg-info/requires.txt 2026-05-14T01:46:52,421 writing top-level names to varcode.egg-info/top_level.txt 2026-05-14T01:46:52,437 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-05-14T01:46:52,445 reading manifest template 'MANIFEST.in' 2026-05-14T01:46:52,446 adding license file 'LICENSE' 2026-05-14T01:46:52,453 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-05-14T01:46:52,459 copying varcode/cli/logging.conf -> build/lib/varcode/cli 2026-05-14T01:46:52,473 installing to build/bdist.linux-armv7l/wheel 2026-05-14T01:46:52,474 running install 2026-05-14T01:46:52,497 running install_lib 2026-05-14T01:46:52,503 creating build/bdist.linux-armv7l/wheel 2026-05-14T01:46:52,505 creating build/bdist.linux-armv7l/wheel/varcode 2026-05-14T01:46:52,507 copying build/lib/varcode/outcomes.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,509 copying build/lib/varcode/util.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,511 copying build/lib/varcode/cryptic_exons.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,514 copying build/lib/varcode/structural_variant.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,516 copying build/lib/varcode/splice_outcomes.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,519 copying build/lib/varcode/vcf_parsing.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,521 copying build/lib/varcode/variant.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,524 copying build/lib/varcode/version.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,526 copying build/lib/varcode/germline.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,528 copying build/lib/varcode/variant_collection.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,531 copying build/lib/varcode/vcf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,534 copying build/lib/varcode/string_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,536 creating build/bdist.linux-armv7l/wheel/varcode/annotators 2026-05-14T01:46:52,537 copying build/lib/varcode/annotators/structural_variant.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-05-14T01:46:52,540 copying build/lib/varcode/annotators/protein_diff.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-05-14T01:46:52,543 copying build/lib/varcode/annotators/registry.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-05-14T01:46:52,545 copying build/lib/varcode/annotators/fast.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-05-14T01:46:52,547 copying build/lib/varcode/annotators/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-05-14T01:46:52,548 copying build/lib/varcode/genome_sequence.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,551 copying build/lib/varcode/reference.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,553 copying build/lib/varcode/sv_allele_parser.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,555 copying build/lib/varcode/rna_evidence.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,557 copying build/lib/varcode/phasing.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,559 copying build/lib/varcode/genome.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,562 creating build/bdist.linux-armv7l/wheel/varcode/effects 2026-05-14T01:46:52,563 copying build/lib/varcode/effects/effect_collection.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,566 copying build/lib/varcode/effects/effect_prediction_coding_frameshift.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,569 copying build/lib/varcode/effects/effect_prediction_coding_in_frame.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,571 copying build/lib/varcode/effects/effect_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,574 copying build/lib/varcode/effects/classify.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,576 copying build/lib/varcode/effects/effect_prediction.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,579 copying build/lib/varcode/effects/fast_path.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,581 copying build/lib/varcode/effects/common.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,583 copying build/lib/varcode/effects/transcript_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,584 copying build/lib/varcode/effects/codon_tables.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,586 copying build/lib/varcode/effects/translate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,589 copying build/lib/varcode/effects/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,590 copying build/lib/varcode/effects/mutate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,592 copying build/lib/varcode/effects/effect_classes.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,596 copying build/lib/varcode/effects/effect_prediction_coding.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,598 copying build/lib/varcode/effects/effect_ordering.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-05-14T01:46:52,601 copying build/lib/varcode/genotype.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,604 creating build/bdist.linux-armv7l/wheel/varcode/transforms 2026-05-14T01:46:52,605 copying build/lib/varcode/transforms/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/transforms 2026-05-14T01:46:52,608 copying build/lib/varcode/vcf_output.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,610 copying build/lib/varcode/common.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,612 copying build/lib/varcode/ucsc_reference_names.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,614 copying build/lib/varcode/errors.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,617 copying build/lib/varcode/nucleotides.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,619 creating build/bdist.linux-armv7l/wheel/varcode/cli 2026-05-14T01:46:52,620 copying build/lib/varcode/cli/genes_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-05-14T01:46:52,622 copying build/lib/varcode/cli/logging.conf -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-05-14T01:46:52,624 copying build/lib/varcode/cli/effects_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-05-14T01:46:52,626 copying build/lib/varcode/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-05-14T01:46:52,628 copying build/lib/varcode/cli/variant_args.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-05-14T01:46:52,630 copying build/lib/varcode/cli/version_info.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-05-14T01:46:52,632 copying build/lib/varcode/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,634 copying build/lib/varcode/maf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,636 copying build/lib/varcode/csv_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,638 copying build/lib/varcode/mutant_transcript.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-05-14T01:46:52,641 running install_egg_info 2026-05-14T01:46:52,646 Copying varcode.egg-info to build/bdist.linux-armv7l/wheel/./varcode-4.22.1-py3.11.egg-info 2026-05-14T01:46:52,658 running install_scripts 2026-05-14T01:46:52,671 creating build/bdist.linux-armv7l/wheel/varcode-4.22.1.dist-info/WHEEL 2026-05-14T01:46:52,674 creating '/tmp/pip-wheel-7yoflsvu/.tmp-yi6ggl5p/varcode-4.22.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-14T01:46:52,677 adding 'varcode/__init__.py' 2026-05-14T01:46:52,678 adding 'varcode/common.py' 2026-05-14T01:46:52,681 adding 'varcode/cryptic_exons.py' 2026-05-14T01:46:52,683 adding 'varcode/csv_helpers.py' 2026-05-14T01:46:52,685 adding 'varcode/errors.py' 2026-05-14T01:46:52,687 adding 'varcode/genome.py' 2026-05-14T01:46:52,689 adding 'varcode/genome_sequence.py' 2026-05-14T01:46:52,691 adding 'varcode/genotype.py' 2026-05-14T01:46:52,697 adding 'varcode/germline.py' 2026-05-14T01:46:52,699 adding 'varcode/maf.py' 2026-05-14T01:46:52,703 adding 'varcode/mutant_transcript.py' 2026-05-14T01:46:52,704 adding 'varcode/nucleotides.py' 2026-05-14T01:46:52,706 adding 'varcode/outcomes.py' 2026-05-14T01:46:52,709 adding 'varcode/phasing.py' 2026-05-14T01:46:52,711 adding 'varcode/reference.py' 2026-05-14T01:46:52,713 adding 'varcode/rna_evidence.py' 2026-05-14T01:46:52,719 adding 'varcode/splice_outcomes.py' 2026-05-14T01:46:52,720 adding 'varcode/string_helpers.py' 2026-05-14T01:46:52,722 adding 'varcode/structural_variant.py' 2026-05-14T01:46:52,724 adding 'varcode/sv_allele_parser.py' 2026-05-14T01:46:52,726 adding 'varcode/ucsc_reference_names.py' 2026-05-14T01:46:52,727 adding 'varcode/util.py' 2026-05-14T01:46:52,730 adding 'varcode/variant.py' 2026-05-14T01:46:52,734 adding 'varcode/variant_collection.py' 2026-05-14T01:46:52,737 adding 'varcode/vcf.py' 2026-05-14T01:46:52,739 adding 'varcode/vcf_output.py' 2026-05-14T01:46:52,741 adding 'varcode/vcf_parsing.py' 2026-05-14T01:46:52,743 adding 'varcode/version.py' 2026-05-14T01:46:52,745 adding 'varcode/annotators/__init__.py' 2026-05-14T01:46:52,746 adding 'varcode/annotators/fast.py' 2026-05-14T01:46:52,748 adding 'varcode/annotators/protein_diff.py' 2026-05-14T01:46:52,750 adding 'varcode/annotators/registry.py' 2026-05-14T01:46:52,755 adding 'varcode/annotators/structural_variant.py' 2026-05-14T01:46:52,757 adding 'varcode/cli/__init__.py' 2026-05-14T01:46:52,758 adding 'varcode/cli/effects_script.py' 2026-05-14T01:46:52,760 adding 'varcode/cli/genes_script.py' 2026-05-14T01:46:52,761 adding 'varcode/cli/logging.conf' 2026-05-14T01:46:52,762 adding 'varcode/cli/variant_args.py' 2026-05-14T01:46:52,764 adding 'varcode/cli/version_info.py' 2026-05-14T01:46:52,766 adding 'varcode/effects/__init__.py' 2026-05-14T01:46:52,767 adding 'varcode/effects/classify.py' 2026-05-14T01:46:52,769 adding 'varcode/effects/codon_tables.py' 2026-05-14T01:46:52,770 adding 'varcode/effects/common.py' 2026-05-14T01:46:52,776 adding 'varcode/effects/effect_classes.py' 2026-05-14T01:46:52,779 adding 'varcode/effects/effect_collection.py' 2026-05-14T01:46:52,781 adding 'varcode/effects/effect_helpers.py' 2026-05-14T01:46:52,784 adding 'varcode/effects/effect_ordering.py' 2026-05-14T01:46:52,787 adding 'varcode/effects/effect_prediction.py' 2026-05-14T01:46:52,789 adding 'varcode/effects/effect_prediction_coding.py' 2026-05-14T01:46:52,791 adding 'varcode/effects/effect_prediction_coding_frameshift.py' 2026-05-14T01:46:52,793 adding 'varcode/effects/effect_prediction_coding_in_frame.py' 2026-05-14T01:46:52,795 adding 'varcode/effects/fast_path.py' 2026-05-14T01:46:52,796 adding 'varcode/effects/mutate.py' 2026-05-14T01:46:52,797 adding 'varcode/effects/transcript_helpers.py' 2026-05-14T01:46:52,799 adding 'varcode/effects/translate.py' 2026-05-14T01:46:52,803 adding 'varcode/transforms/__init__.py' 2026-05-14T01:46:52,807 adding 'varcode-4.22.1.dist-info/licenses/LICENSE' 2026-05-14T01:46:52,809 adding 'varcode-4.22.1.dist-info/METADATA' 2026-05-14T01:46:52,810 adding 'varcode-4.22.1.dist-info/WHEEL' 2026-05-14T01:46:52,811 adding 'varcode-4.22.1.dist-info/entry_points.txt' 2026-05-14T01:46:52,812 adding 'varcode-4.22.1.dist-info/top_level.txt' 2026-05-14T01:46:52,814 adding 'varcode-4.22.1.dist-info/RECORD' 2026-05-14T01:46:52,819 removing build/bdist.linux-armv7l/wheel 2026-05-14T01:46:52,932 Building wheel for varcode (pyproject.toml): finished with status 'done' 2026-05-14T01:46:52,941 Created wheel for varcode: filename=varcode-4.22.1-py3-none-any.whl size=219127 sha256=c1b1e96e836880489424018500b5096012c23f543003f2f36323537e6389292d 2026-05-14T01:46:52,943 Stored in directory: /tmp/pip-ephem-wheel-cache-lr6m79xb/wheels/e7/90/8f/ed5c582441d7a0344da8d19ed304cb13c3cd22c78cfc3c6e67 2026-05-14T01:46:52,956 Successfully built varcode 2026-05-14T01:46:52,965 Removed build tracker: '/tmp/pip-build-tracker-p8xag322'