2026-05-14T03:54:02,053 Created temporary directory: /tmp/pip-ephem-wheel-cache-wz4y2gtx 2026-05-14T03:54:02,055 Created temporary directory: /tmp/pip-build-tracker-21zsto4q 2026-05-14T03:54:02,056 Initialized build tracking at /tmp/pip-build-tracker-21zsto4q 2026-05-14T03:54:02,056 Created build tracker: /tmp/pip-build-tracker-21zsto4q 2026-05-14T03:54:02,056 Entered build tracker: /tmp/pip-build-tracker-21zsto4q 2026-05-14T03:54:02,057 Created temporary directory: /tmp/pip-wheel-tqb3kh3k 2026-05-14T03:54:02,060 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-14T03:54:02,063 Created temporary directory: /tmp/pip-ephem-wheel-cache-2jcd9net 2026-05-14T03:54:02,084 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-14T03:54:02,088 2 location(s) to search for versions of oligo-designer-toolsuite: 2026-05-14T03:54:02,088 * https://pypi.org/simple/oligo-designer-toolsuite/ 2026-05-14T03:54:02,088 * https://www.piwheels.org/simple/oligo-designer-toolsuite/ 2026-05-14T03:54:02,088 Fetching project page and analyzing links: https://pypi.org/simple/oligo-designer-toolsuite/ 2026-05-14T03:54:02,089 Getting page https://pypi.org/simple/oligo-designer-toolsuite/ 2026-05-14T03:54:02,091 Found index url https://pypi.org/simple 2026-05-14T03:54:02,319 Fetched page https://pypi.org/simple/oligo-designer-toolsuite/ as application/vnd.pypi.simple.v1+json 2026-05-14T03:54:02,321 Found link https://files.pythonhosted.org/packages/30/7d/53b4439584867f5e7b4c03bd92d22b60b17be79937a104d75f61fb6004c0/oligo-designer-toolsuite-0.1.3.tar.gz (from https://pypi.org/simple/oligo-designer-toolsuite/), version: 0.1.3 2026-05-14T03:54:02,322 Skipping link: No binaries permitted for oligo-designer-toolsuite: https://files.pythonhosted.org/packages/68/bb/bfaea8d0d8944ac071d4b61e62a9bd5009e1617dc808cf0e331ca19a6891/oligo_designer_toolsuite-1.0.0-py3-none-any.whl (from https://pypi.org/simple/oligo-designer-toolsuite/) (requires-python:>=3.9) 2026-05-14T03:54:02,323 Found link https://files.pythonhosted.org/packages/21/ec/995468b7da13564197e9d898e9726c3a9a1971b5bae1c2b3344ad40e9d95/oligo_designer_toolsuite-1.0.0.tar.gz (from https://pypi.org/simple/oligo-designer-toolsuite/) (requires-python:>=3.9), version: 1.0.0 2026-05-14T03:54:02,324 Skipping link: No binaries permitted for oligo-designer-toolsuite: https://files.pythonhosted.org/packages/35/77/952e8e7ad29b5c9a85e44b8cf1cfc2183cf46f16ad34c1a6bd6ca3bd6f18/oligo_designer_toolsuite-1.0.1-py3-none-any.whl (from https://pypi.org/simple/oligo-designer-toolsuite/) (requires-python:>=3.9) 2026-05-14T03:54:02,325 Found link https://files.pythonhosted.org/packages/cb/32/b4baba23fa70caa0c3c8818112e2114a9e7c1b68f4419f61c43d4a08359f/oligo_designer_toolsuite-1.0.1.tar.gz (from https://pypi.org/simple/oligo-designer-toolsuite/) (requires-python:>=3.9), version: 1.0.1 2026-05-14T03:54:02,325 Skipping link: No binaries permitted for oligo-designer-toolsuite: https://files.pythonhosted.org/packages/23/56/52a14110e15f1e226d92fbe5699f828f53c727219099968f6e415cf4a2b9/oligo_designer_toolsuite-2.0.0-py3-none-any.whl (from https://pypi.org/simple/oligo-designer-toolsuite/) (requires-python:<3.13,>=3.10) 2026-05-14T03:54:02,326 Found link https://files.pythonhosted.org/packages/60/e6/73df1c7f0e086a9a157fcd60d123330b34d7c8a41078788ae8d746e471d9/oligo_designer_toolsuite-2.0.0.tar.gz (from https://pypi.org/simple/oligo-designer-toolsuite/) (requires-python:<3.13,>=3.10), version: 2.0.0 2026-05-14T03:54:02,327 Fetching project page and analyzing links: https://www.piwheels.org/simple/oligo-designer-toolsuite/ 2026-05-14T03:54:02,328 Getting page https://www.piwheels.org/simple/oligo-designer-toolsuite/ 2026-05-14T03:54:02,329 Found index url https://www.piwheels.org/simple 2026-05-14T03:54:02,509 Fetched page https://www.piwheels.org/simple/oligo-designer-toolsuite/ as text/html 2026-05-14T03:54:02,511 Skipping link: No binaries permitted for oligo-designer-toolsuite: https://archive1.piwheels.org/simple/oligo-designer-toolsuite/oligo_designer_toolsuite-1.0.1-py3-none-any.whl#sha256=2576bcd79b2531811505aa8bfc566ef6b44b1d5c83145323513baeaa6478cd8d (from https://www.piwheels.org/simple/oligo-designer-toolsuite/) (requires-python:>=3.9) 2026-05-14T03:54:02,512 Skipping link: No binaries permitted for oligo-designer-toolsuite: https://archive1.piwheels.org/simple/oligo-designer-toolsuite/oligo_designer_toolsuite-1.0.0-py3-none-any.whl#sha256=66e23b03f70cf6559593867257b7f09ee3e84a2153067c47722fe72f0a10e308 (from https://www.piwheels.org/simple/oligo-designer-toolsuite/) (requires-python:>=3.9) 2026-05-14T03:54:02,512 Skipping link: No binaries permitted for oligo-designer-toolsuite: https://archive1.piwheels.org/simple/oligo-designer-toolsuite/oligo_designer_toolsuite-0.1.3-py3-none-any.whl#sha256=4bf8a7588ba687eb0867396faf6877ef08e980ee4f9fd41fcb5e9c9f9098c939 (from https://www.piwheels.org/simple/oligo-designer-toolsuite/) 2026-05-14T03:54:02,513 Skipping link: not a file: https://www.piwheels.org/simple/oligo-designer-toolsuite/ 2026-05-14T03:54:02,513 Skipping link: not a file: https://pypi.org/simple/oligo-designer-toolsuite/ 2026-05-14T03:54:02,532 Given no hashes to check 1 links for project 'oligo-designer-toolsuite': discarding no candidates 2026-05-14T03:54:02,550 Collecting oligo-designer-toolsuite==2.0.0 2026-05-14T03:54:02,552 Created temporary directory: /tmp/pip-unpack-rr5eb787 2026-05-14T03:54:02,792 Downloading oligo_designer_toolsuite-2.0.0.tar.gz (71.3 MB) 2026-05-14T03:54:24,108 Added oligo-designer-toolsuite==2.0.0 from https://files.pythonhosted.org/packages/60/e6/73df1c7f0e086a9a157fcd60d123330b34d7c8a41078788ae8d746e471d9/oligo_designer_toolsuite-2.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-21zsto4q' 2026-05-14T03:54:24,121 Created temporary directory: /tmp/pip-build-env-q1jy08oj 2026-05-14T03:54:24,126 Installing build dependencies: started 2026-05-14T03:54:24,128 Running command pip subprocess to install build dependencies 2026-05-14T03:54:25,258 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-14T03:54:25,669 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-14T03:54:25,692 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-14T03:54:27,466 Collecting setuptools>=61.0 2026-05-14T03:54:27,467 Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-14T03:54:27,484 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-14T03:54:27,829 Collecting setuptools_scm[toml]>=6.2 2026-05-14T03:54:27,830 Obtaining dependency information for setuptools_scm[toml]>=6.2 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata 2026-05-14T03:54:27,846 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB) 2026-05-14T03:54:27,856 Discarding https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl#sha256=600c37b3fea2bb517f59d76792adae856d0b5ce7735b186e4cde804375251321 (from https://www.piwheels.org/simple/setuptools-scm/) (requires-python:>=3.10): Requested setuptools_scm>=6.2 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl#sha256=600c37b3fea2bb517f59d76792adae856d0b5ce7735b186e4cde804375251321 has inconsistent Name: expected 'setuptools_scm', but metadata has 'setuptools-scm' 2026-05-14T03:54:27,880 Using cached setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-14T03:54:27,965 Collecting vcs-versioning>=1.0.0.dev0 2026-05-14T03:54:27,966 Obtaining dependency information for vcs-versioning>=1.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata 2026-05-14T03:54:27,982 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata (1.6 kB) 2026-05-14T03:54:28,171 Collecting packaging>=20 2026-05-14T03:54:28,172 Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-14T03:54:28,188 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-14T03:54:28,414 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-14T03:54:28,434 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-14T03:54:28,569 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-14T03:54:28,612 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-14T03:54:28,639 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-14T03:54:28,731 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-14T03:54:31,509 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools_scm 2026-05-14T03:54:35,180 Creating /tmp/pip-build-env-q1jy08oj/overlay/local/bin 2026-05-14T03:54:35,182 changing mode of /tmp/pip-build-env-q1jy08oj/overlay/local/bin/vcs-versioning to 755 2026-05-14T03:54:35,313 changing mode of /tmp/pip-build-env-q1jy08oj/overlay/local/bin/setuptools-scm to 755 2026-05-14T03:54:35,340 Successfully installed packaging-26.2 setuptools-82.0.1 setuptools_scm-10.0.5 vcs-versioning-1.1.1 2026-05-14T03:54:35,641 Installing build dependencies: finished with status 'done' 2026-05-14T03:54:35,649 Getting requirements to build wheel: started 2026-05-14T03:54:35,650 Running command Getting requirements to build wheel 2026-05-14T03:54:36,369 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-14T03:54:36,369 !! 2026-05-14T03:54:36,371 ******************************************************************************** 2026-05-14T03:54:36,371 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-14T03:54:36,372 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-14T03:54:36,373 or your builds will no longer be supported. 2026-05-14T03:54:36,374 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T03:54:36,375 ******************************************************************************** 2026-05-14T03:54:36,376 !! 2026-05-14T03:54:36,376 corresp(dist, value, root_dir) 2026-05-14T03:54:36,448 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T03:54:36,448 !! 2026-05-14T03:54:36,450 ******************************************************************************** 2026-05-14T03:54:36,450 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T03:54:36,452 License :: OSI Approved :: MIT License 2026-05-14T03:54:36,453 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T03:54:36,453 ******************************************************************************** 2026-05-14T03:54:36,454 !! 2026-05-14T03:54:36,454 dist._finalize_license_expression() 2026-05-14T03:54:36,457 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T03:54:36,458 !! 2026-05-14T03:54:36,458 ******************************************************************************** 2026-05-14T03:54:36,459 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T03:54:36,460 License :: OSI Approved :: MIT License 2026-05-14T03:54:36,461 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T03:54:36,461 ******************************************************************************** 2026-05-14T03:54:36,462 !! 2026-05-14T03:54:36,463 self._finalize_license_expression() 2026-05-14T03:54:36,466 running egg_info 2026-05-14T03:54:36,474 writing oligo_designer_toolsuite.egg-info/PKG-INFO 2026-05-14T03:54:36,480 writing dependency_links to oligo_designer_toolsuite.egg-info/dependency_links.txt 2026-05-14T03:54:36,482 writing entry points to oligo_designer_toolsuite.egg-info/entry_points.txt 2026-05-14T03:54:36,485 writing requirements to oligo_designer_toolsuite.egg-info/requires.txt 2026-05-14T03:54:36,487 writing top-level names to oligo_designer_toolsuite.egg-info/top_level.txt 2026-05-14T03:54:36,521 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-14T03:54:36,522 return get_active_overrides().subprocess_timeout 2026-05-14T03:54:36,529 listing git files failed - pretending there aren't any 2026-05-14T03:54:36,535 reading manifest file 'oligo_designer_toolsuite.egg-info/SOURCES.txt' 2026-05-14T03:54:36,557 reading manifest template 'MANIFEST.in' 2026-05-14T03:54:36,563 no previously-included directories found matching 'tests' 2026-05-14T03:54:36,564 no previously-included directories found matching 'docs' 2026-05-14T03:54:36,564 no previously-included directories found matching 'tutorials' 2026-05-14T03:54:36,565 adding license file 'LICENSE' 2026-05-14T03:54:36,571 writing manifest file 'oligo_designer_toolsuite.egg-info/SOURCES.txt' 2026-05-14T03:54:36,679 Getting requirements to build wheel: finished with status 'done' 2026-05-14T03:54:36,682 Created temporary directory: /tmp/pip-modern-metadata-9l3qwr2w 2026-05-14T03:54:36,685 Preparing metadata (pyproject.toml): started 2026-05-14T03:54:36,686 Running command Preparing metadata (pyproject.toml) 2026-05-14T03:54:37,353 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-14T03:54:37,354 !! 2026-05-14T03:54:37,355 ******************************************************************************** 2026-05-14T03:54:37,356 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-14T03:54:37,357 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-14T03:54:37,357 or your builds will no longer be supported. 2026-05-14T03:54:37,359 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T03:54:37,359 ******************************************************************************** 2026-05-14T03:54:37,360 !! 2026-05-14T03:54:37,361 corresp(dist, value, root_dir) 2026-05-14T03:54:37,431 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T03:54:37,431 !! 2026-05-14T03:54:37,432 ******************************************************************************** 2026-05-14T03:54:37,433 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T03:54:37,434 License :: OSI Approved :: MIT License 2026-05-14T03:54:37,435 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T03:54:37,435 ******************************************************************************** 2026-05-14T03:54:37,436 !! 2026-05-14T03:54:37,437 dist._finalize_license_expression() 2026-05-14T03:54:37,441 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T03:54:37,442 !! 2026-05-14T03:54:37,443 ******************************************************************************** 2026-05-14T03:54:37,443 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T03:54:37,444 License :: OSI Approved :: MIT License 2026-05-14T03:54:37,445 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T03:54:37,446 ******************************************************************************** 2026-05-14T03:54:37,447 !! 2026-05-14T03:54:37,448 self._finalize_license_expression() 2026-05-14T03:54:37,451 running dist_info 2026-05-14T03:54:37,465 creating /tmp/pip-modern-metadata-9l3qwr2w/oligo_designer_toolsuite.egg-info 2026-05-14T03:54:37,466 writing /tmp/pip-modern-metadata-9l3qwr2w/oligo_designer_toolsuite.egg-info/PKG-INFO 2026-05-14T03:54:37,472 writing dependency_links to /tmp/pip-modern-metadata-9l3qwr2w/oligo_designer_toolsuite.egg-info/dependency_links.txt 2026-05-14T03:54:37,474 writing entry points to /tmp/pip-modern-metadata-9l3qwr2w/oligo_designer_toolsuite.egg-info/entry_points.txt 2026-05-14T03:54:37,477 writing requirements to /tmp/pip-modern-metadata-9l3qwr2w/oligo_designer_toolsuite.egg-info/requires.txt 2026-05-14T03:54:37,478 writing top-level names to /tmp/pip-modern-metadata-9l3qwr2w/oligo_designer_toolsuite.egg-info/top_level.txt 2026-05-14T03:54:37,479 writing manifest file '/tmp/pip-modern-metadata-9l3qwr2w/oligo_designer_toolsuite.egg-info/SOURCES.txt' 2026-05-14T03:54:37,510 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-14T03:54:37,511 return get_active_overrides().subprocess_timeout 2026-05-14T03:54:37,517 listing git files failed - pretending there aren't any 2026-05-14T03:54:37,522 reading manifest file '/tmp/pip-modern-metadata-9l3qwr2w/oligo_designer_toolsuite.egg-info/SOURCES.txt' 2026-05-14T03:54:37,524 reading manifest template 'MANIFEST.in' 2026-05-14T03:54:37,528 no previously-included directories found matching 'tests' 2026-05-14T03:54:37,528 no previously-included directories found matching 'docs' 2026-05-14T03:54:37,529 no previously-included directories found matching 'tutorials' 2026-05-14T03:54:37,530 adding license file 'LICENSE' 2026-05-14T03:54:37,533 writing manifest file '/tmp/pip-modern-metadata-9l3qwr2w/oligo_designer_toolsuite.egg-info/SOURCES.txt' 2026-05-14T03:54:37,534 creating '/tmp/pip-modern-metadata-9l3qwr2w/oligo_designer_toolsuite-2.0.0.dist-info' 2026-05-14T03:54:37,671 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-14T03:54:37,677 Source in /tmp/pip-wheel-tqb3kh3k/oligo-designer-toolsuite_81cadc2ba92d4ad49b7304e3aee09871 has version 2.0.0, which satisfies requirement oligo-designer-toolsuite==2.0.0 from https://files.pythonhosted.org/packages/60/e6/73df1c7f0e086a9a157fcd60d123330b34d7c8a41078788ae8d746e471d9/oligo_designer_toolsuite-2.0.0.tar.gz 2026-05-14T03:54:37,678 Removed oligo-designer-toolsuite==2.0.0 from https://files.pythonhosted.org/packages/60/e6/73df1c7f0e086a9a157fcd60d123330b34d7c8a41078788ae8d746e471d9/oligo_designer_toolsuite-2.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-21zsto4q' 2026-05-14T03:54:37,685 Created temporary directory: /tmp/pip-unpack-nw1aw8_j 2026-05-14T03:54:37,686 Building wheels for collected packages: oligo-designer-toolsuite 2026-05-14T03:54:37,690 Created temporary directory: /tmp/pip-wheel-inwhj25m 2026-05-14T03:54:37,691 Destination directory: /tmp/pip-wheel-inwhj25m 2026-05-14T03:54:37,693 Building wheel for oligo-designer-toolsuite (pyproject.toml): started 2026-05-14T03:54:37,694 Running command Building wheel for oligo-designer-toolsuite (pyproject.toml) 2026-05-14T03:54:38,558 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-14T03:54:38,559 !! 2026-05-14T03:54:38,560 ******************************************************************************** 2026-05-14T03:54:38,560 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-14T03:54:38,561 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-14T03:54:38,562 or your builds will no longer be supported. 2026-05-14T03:54:38,563 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T03:54:38,563 ******************************************************************************** 2026-05-14T03:54:38,565 !! 2026-05-14T03:54:38,565 corresp(dist, value, root_dir) 2026-05-14T03:54:38,627 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T03:54:38,628 !! 2026-05-14T03:54:38,629 ******************************************************************************** 2026-05-14T03:54:38,630 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T03:54:38,631 License :: OSI Approved :: MIT License 2026-05-14T03:54:38,632 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T03:54:38,633 ******************************************************************************** 2026-05-14T03:54:38,634 !! 2026-05-14T03:54:38,634 dist._finalize_license_expression() 2026-05-14T03:54:38,636 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-05-14T03:54:38,637 !! 2026-05-14T03:54:38,638 ******************************************************************************** 2026-05-14T03:54:38,638 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-05-14T03:54:38,640 License :: OSI Approved :: MIT License 2026-05-14T03:54:38,641 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-14T03:54:38,641 ******************************************************************************** 2026-05-14T03:54:38,643 !! 2026-05-14T03:54:38,643 self._finalize_license_expression() 2026-05-14T03:54:38,644 running bdist_wheel 2026-05-14T03:54:38,663 running build 2026-05-14T03:54:38,663 running build_py 2026-05-14T03:54:38,665 creating build/lib/oligo_designer_toolsuite 2026-05-14T03:54:38,667 copying oligo_designer_toolsuite/__init__.py -> build/lib/oligo_designer_toolsuite 2026-05-14T03:54:38,669 copying oligo_designer_toolsuite/_exceptions.py -> build/lib/oligo_designer_toolsuite 2026-05-14T03:54:38,671 copying oligo_designer_toolsuite/_version.py -> build/lib/oligo_designer_toolsuite 2026-05-14T03:54:38,673 copying oligo_designer_toolsuite/_constants.py -> build/lib/oligo_designer_toolsuite 2026-05-14T03:54:38,674 running egg_info 2026-05-14T03:54:38,687 writing oligo_designer_toolsuite.egg-info/PKG-INFO 2026-05-14T03:54:38,692 writing dependency_links to oligo_designer_toolsuite.egg-info/dependency_links.txt 2026-05-14T03:54:38,694 writing entry points to oligo_designer_toolsuite.egg-info/entry_points.txt 2026-05-14T03:54:38,697 writing requirements to oligo_designer_toolsuite.egg-info/requires.txt 2026-05-14T03:54:38,698 writing top-level names to oligo_designer_toolsuite.egg-info/top_level.txt 2026-05-14T03:54:38,722 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-14T03:54:38,723 return get_active_overrides().subprocess_timeout 2026-05-14T03:54:38,729 listing git files failed - pretending there aren't any 2026-05-14T03:54:38,733 reading manifest file 'oligo_designer_toolsuite.egg-info/SOURCES.txt' 2026-05-14T03:54:38,740 reading manifest template 'MANIFEST.in' 2026-05-14T03:54:38,744 no previously-included directories found matching 'tests' 2026-05-14T03:54:38,744 no previously-included directories found matching 'docs' 2026-05-14T03:54:38,745 no previously-included directories found matching 'tutorials' 2026-05-14T03:54:38,746 adding license file 'LICENSE' 2026-05-14T03:54:38,752 writing manifest file 'oligo_designer_toolsuite.egg-info/SOURCES.txt' 2026-05-14T03:54:38,755 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'oligo_designer_toolsuite.database' is absent from the `packages` configuration. 2026-05-14T03:54:38,756 !! 2026-05-14T03:54:38,757 ******************************************************************************** 2026-05-14T03:54:38,758 ############################ 2026-05-14T03:54:38,758 # Package would be ignored # 2026-05-14T03:54:38,759 ############################ 2026-05-14T03:54:38,760 Python recognizes 'oligo_designer_toolsuite.database' as an importable package[^1], 2026-05-14T03:54:38,761 but it is absent from setuptools' `packages` configuration. 2026-05-14T03:54:38,762 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-14T03:54:38,762 package, please make sure that 'oligo_designer_toolsuite.database' is explicitly added 2026-05-14T03:54:38,763 to the `packages` configuration field. 2026-05-14T03:54:38,764 Alternatively, you can also rely on setuptools' discovery methods 2026-05-14T03:54:38,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-14T03:54:38,765 instead of `find_packages(...)`/`find:`). 2026-05-14T03:54:38,766 You can read more about "package discovery" on setuptools documentation page: 2026-05-14T03:54:38,767 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-14T03:54:38,768 If you don't want 'oligo_designer_toolsuite.database' to be distributed and are 2026-05-14T03:54:38,769 already explicitly excluding 'oligo_designer_toolsuite.database' via 2026-05-14T03:54:38,769 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-14T03:54:38,770 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-14T03:54:38,771 combination with a more fine grained `package-data` configuration. 2026-05-14T03:54:38,772 You can read more about "package data files" on setuptools documentation page: 2026-05-14T03:54:38,773 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-14T03:54:38,774 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-14T03:54:38,775 even if it does not contain any `.py` files. 2026-05-14T03:54:38,775 On the other hand, currently there is no concept of package data 2026-05-14T03:54:38,775 directory, all directories are treated like packages. 2026-05-14T03:54:38,776 ******************************************************************************** 2026-05-14T03:54:38,777 !! 2026-05-14T03:54:38,777 check.warn(importable) 2026-05-14T03:54:38,778 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'oligo_designer_toolsuite.oligo_efficiency_filter' is absent from the `packages` configuration. 2026-05-14T03:54:38,778 !! 2026-05-14T03:54:38,779 ******************************************************************************** 2026-05-14T03:54:38,780 ############################ 2026-05-14T03:54:38,780 # Package would be ignored # 2026-05-14T03:54:38,781 ############################ 2026-05-14T03:54:38,782 Python recognizes 'oligo_designer_toolsuite.oligo_efficiency_filter' as an importable package[^1], 2026-05-14T03:54:38,782 but it is absent from setuptools' `packages` configuration. 2026-05-14T03:54:38,784 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-14T03:54:38,785 package, please make sure that 'oligo_designer_toolsuite.oligo_efficiency_filter' is explicitly added 2026-05-14T03:54:38,785 to the `packages` configuration field. 2026-05-14T03:54:38,787 Alternatively, you can also rely on setuptools' discovery methods 2026-05-14T03:54:38,787 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-14T03:54:38,788 instead of `find_packages(...)`/`find:`). 2026-05-14T03:54:38,789 You can read more about "package discovery" on setuptools documentation page: 2026-05-14T03:54:38,790 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-14T03:54:38,791 If you don't want 'oligo_designer_toolsuite.oligo_efficiency_filter' to be distributed and are 2026-05-14T03:54:38,792 already explicitly excluding 'oligo_designer_toolsuite.oligo_efficiency_filter' via 2026-05-14T03:54:38,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-14T03:54:38,793 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-14T03:54:38,794 combination with a more fine grained `package-data` configuration. 2026-05-14T03:54:38,795 You can read more about "package data files" on setuptools documentation page: 2026-05-14T03:54:38,796 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-14T03:54:38,798 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-14T03:54:38,799 even if it does not contain any `.py` files. 2026-05-14T03:54:38,800 On the other hand, currently there is no concept of package data 2026-05-14T03:54:38,800 directory, all directories are treated like packages. 2026-05-14T03:54:38,801 ******************************************************************************** 2026-05-14T03:54:38,803 !! 2026-05-14T03:54:38,804 check.warn(importable) 2026-05-14T03:54:38,805 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'oligo_designer_toolsuite.oligo_property_calculator' is absent from the `packages` configuration. 2026-05-14T03:54:38,805 !! 2026-05-14T03:54:38,807 ******************************************************************************** 2026-05-14T03:54:38,807 ############################ 2026-05-14T03:54:38,808 # Package would be ignored # 2026-05-14T03:54:38,808 ############################ 2026-05-14T03:54:38,808 Python recognizes 'oligo_designer_toolsuite.oligo_property_calculator' as an importable package[^1], 2026-05-14T03:54:38,809 but it is absent from setuptools' `packages` configuration. 2026-05-14T03:54:38,810 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-14T03:54:38,810 package, please make sure that 'oligo_designer_toolsuite.oligo_property_calculator' is explicitly added 2026-05-14T03:54:38,811 to the `packages` configuration field. 2026-05-14T03:54:38,812 Alternatively, you can also rely on setuptools' discovery methods 2026-05-14T03:54:38,812 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-14T03:54:38,812 instead of `find_packages(...)`/`find:`). 2026-05-14T03:54:38,813 You can read more about "package discovery" on setuptools documentation page: 2026-05-14T03:54:38,814 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-14T03:54:38,815 If you don't want 'oligo_designer_toolsuite.oligo_property_calculator' to be distributed and are 2026-05-14T03:54:38,815 already explicitly excluding 'oligo_designer_toolsuite.oligo_property_calculator' via 2026-05-14T03:54:38,816 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-14T03:54:38,816 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-14T03:54:38,817 combination with a more fine grained `package-data` configuration. 2026-05-14T03:54:38,818 You can read more about "package data files" on setuptools documentation page: 2026-05-14T03:54:38,819 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-14T03:54:38,820 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-14T03:54:38,821 even if it does not contain any `.py` files. 2026-05-14T03:54:38,821 On the other hand, currently there is no concept of package data 2026-05-14T03:54:38,822 directory, all directories are treated like packages. 2026-05-14T03:54:38,822 ******************************************************************************** 2026-05-14T03:54:38,823 !! 2026-05-14T03:54:38,824 check.warn(importable) 2026-05-14T03:54:38,824 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'oligo_designer_toolsuite.oligo_property_filter' is absent from the `packages` configuration. 2026-05-14T03:54:38,825 !! 2026-05-14T03:54:38,825 ******************************************************************************** 2026-05-14T03:54:38,826 ############################ 2026-05-14T03:54:38,826 # Package would be ignored # 2026-05-14T03:54:38,827 ############################ 2026-05-14T03:54:38,827 Python recognizes 'oligo_designer_toolsuite.oligo_property_filter' as an importable package[^1], 2026-05-14T03:54:38,828 but it is absent from setuptools' `packages` configuration. 2026-05-14T03:54:38,829 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-14T03:54:38,829 package, please make sure that 'oligo_designer_toolsuite.oligo_property_filter' is explicitly added 2026-05-14T03:54:38,830 to the `packages` configuration field. 2026-05-14T03:54:38,831 Alternatively, you can also rely on setuptools' discovery methods 2026-05-14T03:54:38,832 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-14T03:54:38,832 instead of `find_packages(...)`/`find:`). 2026-05-14T03:54:38,833 You can read more about "package discovery" on setuptools documentation page: 2026-05-14T03:54:38,833 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-14T03:54:38,834 If you don't want 'oligo_designer_toolsuite.oligo_property_filter' to be distributed and are 2026-05-14T03:54:38,835 already explicitly excluding 'oligo_designer_toolsuite.oligo_property_filter' via 2026-05-14T03:54:38,835 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-14T03:54:38,836 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-14T03:54:38,836 combination with a more fine grained `package-data` configuration. 2026-05-14T03:54:38,837 You can read more about "package data files" on setuptools documentation page: 2026-05-14T03:54:38,838 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-14T03:54:38,839 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-14T03:54:38,839 even if it does not contain any `.py` files. 2026-05-14T03:54:38,840 On the other hand, currently there is no concept of package data 2026-05-14T03:54:38,840 directory, all directories are treated like packages. 2026-05-14T03:54:38,841 ******************************************************************************** 2026-05-14T03:54:38,842 !! 2026-05-14T03:54:38,842 check.warn(importable) 2026-05-14T03:54:38,843 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'oligo_designer_toolsuite.oligo_selection' is absent from the `packages` configuration. 2026-05-14T03:54:38,843 !! 2026-05-14T03:54:38,844 ******************************************************************************** 2026-05-14T03:54:38,844 ############################ 2026-05-14T03:54:38,845 # Package would be ignored # 2026-05-14T03:54:38,845 ############################ 2026-05-14T03:54:38,846 Python recognizes 'oligo_designer_toolsuite.oligo_selection' as an importable package[^1], 2026-05-14T03:54:38,847 but it is absent from setuptools' `packages` configuration. 2026-05-14T03:54:38,847 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-14T03:54:38,848 package, please make sure that 'oligo_designer_toolsuite.oligo_selection' is explicitly added 2026-05-14T03:54:38,848 to the `packages` configuration field. 2026-05-14T03:54:38,849 Alternatively, you can also rely on setuptools' discovery methods 2026-05-14T03:54:38,850 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-14T03:54:38,851 instead of `find_packages(...)`/`find:`). 2026-05-14T03:54:38,851 You can read more about "package discovery" on setuptools documentation page: 2026-05-14T03:54:38,852 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-14T03:54:38,853 If you don't want 'oligo_designer_toolsuite.oligo_selection' to be distributed and are 2026-05-14T03:54:38,854 already explicitly excluding 'oligo_designer_toolsuite.oligo_selection' via 2026-05-14T03:54:38,854 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-14T03:54:38,855 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-14T03:54:38,855 combination with a more fine grained `package-data` configuration. 2026-05-14T03:54:38,856 You can read more about "package data files" on setuptools documentation page: 2026-05-14T03:54:38,858 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-14T03:54:38,859 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-14T03:54:38,860 even if it does not contain any `.py` files. 2026-05-14T03:54:38,860 On the other hand, currently there is no concept of package data 2026-05-14T03:54:38,860 directory, all directories are treated like packages. 2026-05-14T03:54:38,861 ******************************************************************************** 2026-05-14T03:54:38,862 !! 2026-05-14T03:54:38,862 check.warn(importable) 2026-05-14T03:54:38,863 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'oligo_designer_toolsuite.oligo_specificity_filter' is absent from the `packages` configuration. 2026-05-14T03:54:38,863 !! 2026-05-14T03:54:38,864 ******************************************************************************** 2026-05-14T03:54:38,864 ############################ 2026-05-14T03:54:38,865 # Package would be ignored # 2026-05-14T03:54:38,865 ############################ 2026-05-14T03:54:38,865 Python recognizes 'oligo_designer_toolsuite.oligo_specificity_filter' as an importable package[^1], 2026-05-14T03:54:38,866 but it is absent from setuptools' `packages` configuration. 2026-05-14T03:54:38,867 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-14T03:54:38,867 package, please make sure that 'oligo_designer_toolsuite.oligo_specificity_filter' is explicitly added 2026-05-14T03:54:38,868 to the `packages` configuration field. 2026-05-14T03:54:38,869 Alternatively, you can also rely on setuptools' discovery methods 2026-05-14T03:54:38,869 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-14T03:54:38,870 instead of `find_packages(...)`/`find:`). 2026-05-14T03:54:38,871 You can read more about "package discovery" on setuptools documentation page: 2026-05-14T03:54:38,872 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-14T03:54:38,873 If you don't want 'oligo_designer_toolsuite.oligo_specificity_filter' to be distributed and are 2026-05-14T03:54:38,873 already explicitly excluding 'oligo_designer_toolsuite.oligo_specificity_filter' via 2026-05-14T03:54:38,873 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-14T03:54:38,874 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-14T03:54:38,874 combination with a more fine grained `package-data` configuration. 2026-05-14T03:54:38,875 You can read more about "package data files" on setuptools documentation page: 2026-05-14T03:54:38,876 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-14T03:54:38,878 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-14T03:54:38,878 even if it does not contain any `.py` files. 2026-05-14T03:54:38,879 On the other hand, currently there is no concept of package data 2026-05-14T03:54:38,880 directory, all directories are treated like packages. 2026-05-14T03:54:38,880 ******************************************************************************** 2026-05-14T03:54:38,881 !! 2026-05-14T03:54:38,881 check.warn(importable) 2026-05-14T03:54:38,882 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'oligo_designer_toolsuite.pipelines' is absent from the `packages` configuration. 2026-05-14T03:54:38,882 !! 2026-05-14T03:54:38,884 ******************************************************************************** 2026-05-14T03:54:38,884 ############################ 2026-05-14T03:54:38,885 # Package would be ignored # 2026-05-14T03:54:38,885 ############################ 2026-05-14T03:54:38,885 Python recognizes 'oligo_designer_toolsuite.pipelines' as an importable package[^1], 2026-05-14T03:54:38,886 but it is absent from setuptools' `packages` configuration. 2026-05-14T03:54:38,887 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-14T03:54:38,887 package, please make sure that 'oligo_designer_toolsuite.pipelines' is explicitly added 2026-05-14T03:54:38,888 to the `packages` configuration field. 2026-05-14T03:54:38,889 Alternatively, you can also rely on setuptools' discovery methods 2026-05-14T03:54:38,889 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-14T03:54:38,890 instead of `find_packages(...)`/`find:`). 2026-05-14T03:54:38,890 You can read more about "package discovery" on setuptools documentation page: 2026-05-14T03:54:38,891 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-14T03:54:38,892 If you don't want 'oligo_designer_toolsuite.pipelines' to be distributed and are 2026-05-14T03:54:38,893 already explicitly excluding 'oligo_designer_toolsuite.pipelines' via 2026-05-14T03:54:38,893 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-14T03:54:38,894 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-14T03:54:38,894 combination with a more fine grained `package-data` configuration. 2026-05-14T03:54:38,895 You can read more about "package data files" on setuptools documentation page: 2026-05-14T03:54:38,896 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-14T03:54:38,898 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-14T03:54:38,898 even if it does not contain any `.py` files. 2026-05-14T03:54:38,899 On the other hand, currently there is no concept of package data 2026-05-14T03:54:38,899 directory, all directories are treated like packages. 2026-05-14T03:54:38,900 ******************************************************************************** 2026-05-14T03:54:38,903 !! 2026-05-14T03:54:38,903 check.warn(importable) 2026-05-14T03:54:38,904 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'oligo_designer_toolsuite.sequence_generator' is absent from the `packages` configuration. 2026-05-14T03:54:38,904 !! 2026-05-14T03:54:38,906 ******************************************************************************** 2026-05-14T03:54:38,907 ############################ 2026-05-14T03:54:38,907 # Package would be ignored # 2026-05-14T03:54:38,908 ############################ 2026-05-14T03:54:38,908 Python recognizes 'oligo_designer_toolsuite.sequence_generator' as an importable package[^1], 2026-05-14T03:54:38,909 but it is absent from setuptools' `packages` configuration. 2026-05-14T03:54:38,910 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-14T03:54:38,911 package, please make sure that 'oligo_designer_toolsuite.sequence_generator' is explicitly added 2026-05-14T03:54:38,912 to the `packages` configuration field. 2026-05-14T03:54:38,913 Alternatively, you can also rely on setuptools' discovery methods 2026-05-14T03:54:38,914 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-14T03:54:38,914 instead of `find_packages(...)`/`find:`). 2026-05-14T03:54:38,915 You can read more about "package discovery" on setuptools documentation page: 2026-05-14T03:54:38,917 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-14T03:54:38,918 If you don't want 'oligo_designer_toolsuite.sequence_generator' to be distributed and are 2026-05-14T03:54:38,919 already explicitly excluding 'oligo_designer_toolsuite.sequence_generator' via 2026-05-14T03:54:38,919 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-14T03:54:38,919 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-14T03:54:38,920 combination with a more fine grained `package-data` configuration. 2026-05-14T03:54:38,921 You can read more about "package data files" on setuptools documentation page: 2026-05-14T03:54:38,921 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-14T03:54:38,923 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-14T03:54:38,923 even if it does not contain any `.py` files. 2026-05-14T03:54:38,924 On the other hand, currently there is no concept of package data 2026-05-14T03:54:38,924 directory, all directories are treated like packages. 2026-05-14T03:54:38,924 ******************************************************************************** 2026-05-14T03:54:38,925 !! 2026-05-14T03:54:38,926 check.warn(importable) 2026-05-14T03:54:38,926 /tmp/pip-build-env-q1jy08oj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'oligo_designer_toolsuite.utils' is absent from the `packages` configuration. 2026-05-14T03:54:38,926 !! 2026-05-14T03:54:38,927 ******************************************************************************** 2026-05-14T03:54:38,928 ############################ 2026-05-14T03:54:38,928 # Package would be ignored # 2026-05-14T03:54:38,929 ############################ 2026-05-14T03:54:38,929 Python recognizes 'oligo_designer_toolsuite.utils' as an importable package[^1], 2026-05-14T03:54:38,930 but it is absent from setuptools' `packages` configuration. 2026-05-14T03:54:38,931 This leads to an ambiguous overall configuration. If you want to distribute this 2026-05-14T03:54:38,931 package, please make sure that 'oligo_designer_toolsuite.utils' is explicitly added 2026-05-14T03:54:38,932 to the `packages` configuration field. 2026-05-14T03:54:38,933 Alternatively, you can also rely on setuptools' discovery methods 2026-05-14T03:54:38,934 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-05-14T03:54:38,934 instead of `find_packages(...)`/`find:`). 2026-05-14T03:54:38,935 You can read more about "package discovery" on setuptools documentation page: 2026-05-14T03:54:38,936 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-05-14T03:54:38,937 If you don't want 'oligo_designer_toolsuite.utils' to be distributed and are 2026-05-14T03:54:38,938 already explicitly excluding 'oligo_designer_toolsuite.utils' via 2026-05-14T03:54:38,938 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-05-14T03:54:38,939 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-05-14T03:54:38,939 combination with a more fine grained `package-data` configuration. 2026-05-14T03:54:38,940 You can read more about "package data files" on setuptools documentation page: 2026-05-14T03:54:38,941 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-05-14T03:54:38,943 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-05-14T03:54:38,943 even if it does not contain any `.py` files. 2026-05-14T03:54:38,944 On the other hand, currently there is no concept of package data 2026-05-14T03:54:38,944 directory, all directories are treated like packages. 2026-05-14T03:54:38,945 ******************************************************************************** 2026-05-14T03:54:38,946 !! 2026-05-14T03:54:38,946 check.warn(importable) 2026-05-14T03:54:38,947 creating build/lib/oligo_designer_toolsuite/database 2026-05-14T03:54:38,947 copying oligo_designer_toolsuite/database/__init__.py -> build/lib/oligo_designer_toolsuite/database 2026-05-14T03:54:38,947 copying oligo_designer_toolsuite/database/_oligo_database.py -> build/lib/oligo_designer_toolsuite/database 2026-05-14T03:54:38,948 copying oligo_designer_toolsuite/database/_reference_database.py -> build/lib/oligo_designer_toolsuite/database 2026-05-14T03:54:38,948 creating build/lib/oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:38,949 copying oligo_designer_toolsuite/oligo_efficiency_filter/__init__.py -> build/lib/oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:38,949 copying oligo_designer_toolsuite/oligo_efficiency_filter/_oligo_scoring.py -> build/lib/oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:38,950 copying oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_base.py -> build/lib/oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:38,950 copying oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_region_property.py -> build/lib/oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:38,950 copying oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_sequence_property.py -> build/lib/oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:38,951 copying oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_set_property.py -> build/lib/oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:38,952 copying oligo_designer_toolsuite/oligo_efficiency_filter/_set_scoring.py -> build/lib/oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:38,952 creating build/lib/oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:38,953 copying oligo_designer_toolsuite/oligo_property_calculator/__init__.py -> build/lib/oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:38,953 copying oligo_designer_toolsuite/oligo_property_calculator/_property_base.py -> build/lib/oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:38,954 copying oligo_designer_toolsuite/oligo_property_calculator/_property_calculator.py -> build/lib/oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:38,954 copying oligo_designer_toolsuite/oligo_property_calculator/_property_functions.py -> build/lib/oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:38,955 copying oligo_designer_toolsuite/oligo_property_calculator/_property_region.py -> build/lib/oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:38,955 copying oligo_designer_toolsuite/oligo_property_calculator/_property_sequence.py -> build/lib/oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:38,956 creating build/lib/oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:38,956 copying oligo_designer_toolsuite/oligo_property_filter/__init__.py -> build/lib/oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:38,957 copying oligo_designer_toolsuite/oligo_property_filter/_filter_base.py -> build/lib/oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:38,957 copying oligo_designer_toolsuite/oligo_property_filter/_filter_experiment_specific.py -> build/lib/oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:38,958 copying oligo_designer_toolsuite/oligo_property_filter/_filter_experiment_unspecific.py -> build/lib/oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:38,958 copying oligo_designer_toolsuite/oligo_property_filter/_property_filter.py -> build/lib/oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:38,959 creating build/lib/oligo_designer_toolsuite/oligo_selection 2026-05-14T03:54:38,959 copying oligo_designer_toolsuite/oligo_selection/__init__.py -> build/lib/oligo_designer_toolsuite/oligo_selection 2026-05-14T03:54:38,960 copying oligo_designer_toolsuite/oligo_selection/_oligo_selection_base.py -> build/lib/oligo_designer_toolsuite/oligo_selection 2026-05-14T03:54:38,961 copying oligo_designer_toolsuite/oligo_selection/_oligo_selection_homogeneous_properties.py -> build/lib/oligo_designer_toolsuite/oligo_selection 2026-05-14T03:54:38,961 copying oligo_designer_toolsuite/oligo_selection/_oligo_selection_independent_sets.py -> build/lib/oligo_designer_toolsuite/oligo_selection 2026-05-14T03:54:38,961 creating build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,962 copying oligo_designer_toolsuite/oligo_specificity_filter/__init__.py -> build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,962 copying oligo_designer_toolsuite/oligo_specificity_filter/_filter_base.py -> build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,963 copying oligo_designer_toolsuite/oligo_specificity_filter/_filter_blastn.py -> build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,963 copying oligo_designer_toolsuite/oligo_specificity_filter/_filter_bowtie.py -> build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,964 copying oligo_designer_toolsuite/oligo_specificity_filter/_filter_cross_hybridization.py -> build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,964 copying oligo_designer_toolsuite/oligo_specificity_filter/_filter_exact_matches.py -> build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,964 copying oligo_designer_toolsuite/oligo_specificity_filter/_filter_hybridization_probability.py -> build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,965 copying oligo_designer_toolsuite/oligo_specificity_filter/_filter_variants.py -> build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,966 copying oligo_designer_toolsuite/oligo_specificity_filter/_policies.py -> build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,966 copying oligo_designer_toolsuite/oligo_specificity_filter/_specificity_filter.py -> build/lib/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:38,967 creating build/lib/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:38,968 copying oligo_designer_toolsuite/pipelines/__init__.py -> build/lib/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:38,968 copying oligo_designer_toolsuite/pipelines/_cycle_hcr_probe_designer.py -> build/lib/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:38,969 copying oligo_designer_toolsuite/pipelines/_genomic_region_generator.py -> build/lib/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:38,970 copying oligo_designer_toolsuite/pipelines/_hcr_probe_designer.py -> build/lib/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:38,970 copying oligo_designer_toolsuite/pipelines/_merfish_probe_designer.py -> build/lib/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:38,971 copying oligo_designer_toolsuite/pipelines/_oligo_seq_probe_designer.py -> build/lib/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:38,971 copying oligo_designer_toolsuite/pipelines/_scrinshot_probe_designer.py -> build/lib/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:38,972 copying oligo_designer_toolsuite/pipelines/_seqfish_plus_probe_designer.py -> build/lib/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:38,973 copying oligo_designer_toolsuite/pipelines/_utils.py -> build/lib/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:38,973 creating build/lib/oligo_designer_toolsuite/sequence_generator 2026-05-14T03:54:38,974 copying oligo_designer_toolsuite/sequence_generator/__init__.py -> build/lib/oligo_designer_toolsuite/sequence_generator 2026-05-14T03:54:38,975 copying oligo_designer_toolsuite/sequence_generator/_ftp_loader.py -> build/lib/oligo_designer_toolsuite/sequence_generator 2026-05-14T03:54:38,975 copying oligo_designer_toolsuite/sequence_generator/_genomic_region_generator.py -> build/lib/oligo_designer_toolsuite/sequence_generator 2026-05-14T03:54:38,976 copying oligo_designer_toolsuite/sequence_generator/_oligo_sequence_generator.py -> build/lib/oligo_designer_toolsuite/sequence_generator 2026-05-14T03:54:38,977 creating build/lib/oligo_designer_toolsuite/utils 2026-05-14T03:54:38,977 copying oligo_designer_toolsuite/utils/__init__.py -> build/lib/oligo_designer_toolsuite/utils 2026-05-14T03:54:38,978 copying oligo_designer_toolsuite/utils/_checkers_and_helpers.py -> build/lib/oligo_designer_toolsuite/utils 2026-05-14T03:54:38,978 copying oligo_designer_toolsuite/utils/_database_processor.py -> build/lib/oligo_designer_toolsuite/utils 2026-05-14T03:54:38,978 copying oligo_designer_toolsuite/utils/_sequence_parser.py -> build/lib/oligo_designer_toolsuite/utils 2026-05-14T03:54:38,979 copying oligo_designer_toolsuite/utils/_sequence_processor.py -> build/lib/oligo_designer_toolsuite/utils 2026-05-14T03:54:38,979 installing to build/bdist.linux-armv7l/wheel 2026-05-14T03:54:38,980 running install 2026-05-14T03:54:39,003 running install_lib 2026-05-14T03:54:39,011 creating build/bdist.linux-armv7l/wheel 2026-05-14T03:54:39,013 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite 2026-05-14T03:54:39,014 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite/sequence_generator 2026-05-14T03:54:39,015 copying build/lib/oligo_designer_toolsuite/sequence_generator/__init__.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/sequence_generator 2026-05-14T03:54:39,017 copying build/lib/oligo_designer_toolsuite/sequence_generator/_genomic_region_generator.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/sequence_generator 2026-05-14T03:54:39,021 copying build/lib/oligo_designer_toolsuite/sequence_generator/_ftp_loader.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/sequence_generator 2026-05-14T03:54:39,024 copying build/lib/oligo_designer_toolsuite/sequence_generator/_oligo_sequence_generator.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/sequence_generator 2026-05-14T03:54:39,027 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:39,028 copying build/lib/oligo_designer_toolsuite/oligo_property_calculator/_property_functions.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:39,031 copying build/lib/oligo_designer_toolsuite/oligo_property_calculator/_property_sequence.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:39,033 copying build/lib/oligo_designer_toolsuite/oligo_property_calculator/__init__.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:39,035 copying build/lib/oligo_designer_toolsuite/oligo_property_calculator/_property_region.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:39,038 copying build/lib/oligo_designer_toolsuite/oligo_property_calculator/_property_calculator.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:39,040 copying build/lib/oligo_designer_toolsuite/oligo_property_calculator/_property_base.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_calculator 2026-05-14T03:54:39,042 copying build/lib/oligo_designer_toolsuite/__init__.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite 2026-05-14T03:54:39,044 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite/utils 2026-05-14T03:54:39,045 copying build/lib/oligo_designer_toolsuite/utils/_database_processor.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/utils 2026-05-14T03:54:39,048 copying build/lib/oligo_designer_toolsuite/utils/_sequence_parser.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/utils 2026-05-14T03:54:39,050 copying build/lib/oligo_designer_toolsuite/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/utils 2026-05-14T03:54:39,052 copying build/lib/oligo_designer_toolsuite/utils/_sequence_processor.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/utils 2026-05-14T03:54:39,054 copying build/lib/oligo_designer_toolsuite/utils/_checkers_and_helpers.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/utils 2026-05-14T03:54:39,057 copying build/lib/oligo_designer_toolsuite/_exceptions.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite 2026-05-14T03:54:39,059 copying build/lib/oligo_designer_toolsuite/_version.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite 2026-05-14T03:54:39,061 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite/oligo_selection 2026-05-14T03:54:39,062 copying build/lib/oligo_designer_toolsuite/oligo_selection/__init__.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_selection 2026-05-14T03:54:39,064 copying build/lib/oligo_designer_toolsuite/oligo_selection/_oligo_selection_base.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_selection 2026-05-14T03:54:39,066 copying build/lib/oligo_designer_toolsuite/oligo_selection/_oligo_selection_homogeneous_properties.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_selection 2026-05-14T03:54:39,068 copying build/lib/oligo_designer_toolsuite/oligo_selection/_oligo_selection_independent_sets.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_selection 2026-05-14T03:54:39,071 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,072 copying build/lib/oligo_designer_toolsuite/oligo_specificity_filter/_specificity_filter.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,074 copying build/lib/oligo_designer_toolsuite/oligo_specificity_filter/__init__.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,076 copying build/lib/oligo_designer_toolsuite/oligo_specificity_filter/_filter_exact_matches.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,079 copying build/lib/oligo_designer_toolsuite/oligo_specificity_filter/_filter_base.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,081 copying build/lib/oligo_designer_toolsuite/oligo_specificity_filter/_filter_variants.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,083 copying build/lib/oligo_designer_toolsuite/oligo_specificity_filter/_filter_bowtie.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,086 copying build/lib/oligo_designer_toolsuite/oligo_specificity_filter/_policies.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,089 copying build/lib/oligo_designer_toolsuite/oligo_specificity_filter/_filter_cross_hybridization.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,091 copying build/lib/oligo_designer_toolsuite/oligo_specificity_filter/_filter_hybridization_probability.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,093 copying build/lib/oligo_designer_toolsuite/oligo_specificity_filter/_filter_blastn.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_specificity_filter 2026-05-14T03:54:39,097 copying build/lib/oligo_designer_toolsuite/_constants.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite 2026-05-14T03:54:39,099 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:39,100 copying build/lib/oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_region_property.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:39,103 copying build/lib/oligo_designer_toolsuite/oligo_efficiency_filter/__init__.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:39,105 copying build/lib/oligo_designer_toolsuite/oligo_efficiency_filter/_oligo_scoring.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:39,107 copying build/lib/oligo_designer_toolsuite/oligo_efficiency_filter/_set_scoring.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:39,109 copying build/lib/oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_base.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:39,111 copying build/lib/oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_set_property.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:39,113 copying build/lib/oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_sequence_property.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_efficiency_filter 2026-05-14T03:54:39,116 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite/database 2026-05-14T03:54:39,117 copying build/lib/oligo_designer_toolsuite/database/__init__.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/database 2026-05-14T03:54:39,119 copying build/lib/oligo_designer_toolsuite/database/_oligo_database.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/database 2026-05-14T03:54:39,122 copying build/lib/oligo_designer_toolsuite/database/_reference_database.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/database 2026-05-14T03:54:39,124 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:39,125 copying build/lib/oligo_designer_toolsuite/oligo_property_filter/__init__.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:39,128 copying build/lib/oligo_designer_toolsuite/oligo_property_filter/_property_filter.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:39,130 copying build/lib/oligo_designer_toolsuite/oligo_property_filter/_filter_base.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:39,132 copying build/lib/oligo_designer_toolsuite/oligo_property_filter/_filter_experiment_specific.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:39,134 copying build/lib/oligo_designer_toolsuite/oligo_property_filter/_filter_experiment_unspecific.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/oligo_property_filter 2026-05-14T03:54:39,138 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite/pipelines 2026-05-14T03:54:39,139 copying build/lib/oligo_designer_toolsuite/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/pipelines 2026-05-14T03:54:39,141 copying build/lib/oligo_designer_toolsuite/pipelines/_genomic_region_generator.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/pipelines 2026-05-14T03:54:39,143 copying build/lib/oligo_designer_toolsuite/pipelines/_hcr_probe_designer.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/pipelines 2026-05-14T03:54:39,146 copying build/lib/oligo_designer_toolsuite/pipelines/_oligo_seq_probe_designer.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/pipelines 2026-05-14T03:54:39,149 copying build/lib/oligo_designer_toolsuite/pipelines/_scrinshot_probe_designer.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/pipelines 2026-05-14T03:54:39,153 copying build/lib/oligo_designer_toolsuite/pipelines/_seqfish_plus_probe_designer.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/pipelines 2026-05-14T03:54:39,158 copying build/lib/oligo_designer_toolsuite/pipelines/_merfish_probe_designer.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/pipelines 2026-05-14T03:54:39,162 copying build/lib/oligo_designer_toolsuite/pipelines/_utils.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/pipelines 2026-05-14T03:54:39,164 copying build/lib/oligo_designer_toolsuite/pipelines/_cycle_hcr_probe_designer.py -> build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite/pipelines 2026-05-14T03:54:39,168 running install_egg_info 2026-05-14T03:54:39,175 Copying oligo_designer_toolsuite.egg-info to build/bdist.linux-armv7l/wheel/./oligo_designer_toolsuite-2.0.0-py3.11.egg-info 2026-05-14T03:54:39,187 running install_scripts 2026-05-14T03:54:39,199 creating build/bdist.linux-armv7l/wheel/oligo_designer_toolsuite-2.0.0.dist-info/WHEEL 2026-05-14T03:54:39,201 creating '/tmp/pip-wheel-inwhj25m/.tmp-_04ta4i1/oligo_designer_toolsuite-2.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-14T03:54:39,204 adding 'oligo_designer_toolsuite/__init__.py' 2026-05-14T03:54:39,205 adding 'oligo_designer_toolsuite/_constants.py' 2026-05-14T03:54:39,207 adding 'oligo_designer_toolsuite/_exceptions.py' 2026-05-14T03:54:39,208 adding 'oligo_designer_toolsuite/_version.py' 2026-05-14T03:54:39,210 adding 'oligo_designer_toolsuite/database/__init__.py' 2026-05-14T03:54:39,216 adding 'oligo_designer_toolsuite/database/_oligo_database.py' 2026-05-14T03:54:39,218 adding 'oligo_designer_toolsuite/database/_reference_database.py' 2026-05-14T03:54:39,220 adding 'oligo_designer_toolsuite/oligo_efficiency_filter/__init__.py' 2026-05-14T03:54:39,222 adding 'oligo_designer_toolsuite/oligo_efficiency_filter/_oligo_scoring.py' 2026-05-14T03:54:39,223 adding 'oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_base.py' 2026-05-14T03:54:39,225 adding 'oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_region_property.py' 2026-05-14T03:54:39,226 adding 'oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_sequence_property.py' 2026-05-14T03:54:39,228 adding 'oligo_designer_toolsuite/oligo_efficiency_filter/_scorer_set_property.py' 2026-05-14T03:54:39,230 adding 'oligo_designer_toolsuite/oligo_efficiency_filter/_set_scoring.py' 2026-05-14T03:54:39,232 adding 'oligo_designer_toolsuite/oligo_property_calculator/__init__.py' 2026-05-14T03:54:39,233 adding 'oligo_designer_toolsuite/oligo_property_calculator/_property_base.py' 2026-05-14T03:54:39,235 adding 'oligo_designer_toolsuite/oligo_property_calculator/_property_calculator.py' 2026-05-14T03:54:39,238 adding 'oligo_designer_toolsuite/oligo_property_calculator/_property_functions.py' 2026-05-14T03:54:39,239 adding 'oligo_designer_toolsuite/oligo_property_calculator/_property_region.py' 2026-05-14T03:54:39,242 adding 'oligo_designer_toolsuite/oligo_property_calculator/_property_sequence.py' 2026-05-14T03:54:39,244 adding 'oligo_designer_toolsuite/oligo_property_filter/__init__.py' 2026-05-14T03:54:39,245 adding 'oligo_designer_toolsuite/oligo_property_filter/_filter_base.py' 2026-05-14T03:54:39,247 adding 'oligo_designer_toolsuite/oligo_property_filter/_filter_experiment_specific.py' 2026-05-14T03:54:39,249 adding 'oligo_designer_toolsuite/oligo_property_filter/_filter_experiment_unspecific.py' 2026-05-14T03:54:39,251 adding 'oligo_designer_toolsuite/oligo_property_filter/_property_filter.py' 2026-05-14T03:54:39,253 adding 'oligo_designer_toolsuite/oligo_selection/__init__.py' 2026-05-14T03:54:39,254 adding 'oligo_designer_toolsuite/oligo_selection/_oligo_selection_base.py' 2026-05-14T03:54:39,256 adding 'oligo_designer_toolsuite/oligo_selection/_oligo_selection_homogeneous_properties.py' 2026-05-14T03:54:39,259 adding 'oligo_designer_toolsuite/oligo_selection/_oligo_selection_independent_sets.py' 2026-05-14T03:54:39,261 adding 'oligo_designer_toolsuite/oligo_specificity_filter/__init__.py' 2026-05-14T03:54:39,264 adding 'oligo_designer_toolsuite/oligo_specificity_filter/_filter_base.py' 2026-05-14T03:54:39,268 adding 'oligo_designer_toolsuite/oligo_specificity_filter/_filter_blastn.py' 2026-05-14T03:54:39,270 adding 'oligo_designer_toolsuite/oligo_specificity_filter/_filter_bowtie.py' 2026-05-14T03:54:39,272 adding 'oligo_designer_toolsuite/oligo_specificity_filter/_filter_cross_hybridization.py' 2026-05-14T03:54:39,274 adding 'oligo_designer_toolsuite/oligo_specificity_filter/_filter_exact_matches.py' 2026-05-14T03:54:39,276 adding 'oligo_designer_toolsuite/oligo_specificity_filter/_filter_hybridization_probability.py' 2026-05-14T03:54:39,278 adding 'oligo_designer_toolsuite/oligo_specificity_filter/_filter_variants.py' 2026-05-14T03:54:39,279 adding 'oligo_designer_toolsuite/oligo_specificity_filter/_policies.py' 2026-05-14T03:54:39,280 adding 'oligo_designer_toolsuite/oligo_specificity_filter/_specificity_filter.py' 2026-05-14T03:54:39,282 adding 'oligo_designer_toolsuite/pipelines/__init__.py' 2026-05-14T03:54:39,294 adding 'oligo_designer_toolsuite/pipelines/_cycle_hcr_probe_designer.py' 2026-05-14T03:54:39,296 adding 'oligo_designer_toolsuite/pipelines/_genomic_region_generator.py' 2026-05-14T03:54:39,299 adding 'oligo_designer_toolsuite/pipelines/_hcr_probe_designer.py' 2026-05-14T03:54:39,313 adding 'oligo_designer_toolsuite/pipelines/_merfish_probe_designer.py' 2026-05-14T03:54:39,321 adding 'oligo_designer_toolsuite/pipelines/_oligo_seq_probe_designer.py' 2026-05-14T03:54:39,332 adding 'oligo_designer_toolsuite/pipelines/_scrinshot_probe_designer.py' 2026-05-14T03:54:39,346 adding 'oligo_designer_toolsuite/pipelines/_seqfish_plus_probe_designer.py' 2026-05-14T03:54:39,348 adding 'oligo_designer_toolsuite/pipelines/_utils.py' 2026-05-14T03:54:39,350 adding 'oligo_designer_toolsuite/sequence_generator/__init__.py' 2026-05-14T03:54:39,354 adding 'oligo_designer_toolsuite/sequence_generator/_ftp_loader.py' 2026-05-14T03:54:39,360 adding 'oligo_designer_toolsuite/sequence_generator/_genomic_region_generator.py' 2026-05-14T03:54:39,363 adding 'oligo_designer_toolsuite/sequence_generator/_oligo_sequence_generator.py' 2026-05-14T03:54:39,365 adding 'oligo_designer_toolsuite/utils/__init__.py' 2026-05-14T03:54:39,366 adding 'oligo_designer_toolsuite/utils/_checkers_and_helpers.py' 2026-05-14T03:54:39,368 adding 'oligo_designer_toolsuite/utils/_database_processor.py' 2026-05-14T03:54:39,371 adding 'oligo_designer_toolsuite/utils/_sequence_parser.py' 2026-05-14T03:54:39,374 adding 'oligo_designer_toolsuite/utils/_sequence_processor.py' 2026-05-14T03:54:39,376 adding 'oligo_designer_toolsuite-2.0.0.dist-info/licenses/LICENSE' 2026-05-14T03:54:39,378 adding 'oligo_designer_toolsuite-2.0.0.dist-info/METADATA' 2026-05-14T03:54:39,379 adding 'oligo_designer_toolsuite-2.0.0.dist-info/WHEEL' 2026-05-14T03:54:39,380 adding 'oligo_designer_toolsuite-2.0.0.dist-info/entry_points.txt' 2026-05-14T03:54:39,382 adding 'oligo_designer_toolsuite-2.0.0.dist-info/top_level.txt' 2026-05-14T03:54:39,383 adding 'oligo_designer_toolsuite-2.0.0.dist-info/RECORD' 2026-05-14T03:54:39,388 removing build/bdist.linux-armv7l/wheel 2026-05-14T03:54:39,516 Building wheel for oligo-designer-toolsuite (pyproject.toml): finished with status 'done' 2026-05-14T03:54:39,526 Created wheel for oligo-designer-toolsuite: filename=oligo_designer_toolsuite-2.0.0-py3-none-any.whl size=257764 sha256=83f27ac3bd1e07a9bdec7f9e62eef370e66b7ea702f68010c17e5d26472a8149 2026-05-14T03:54:39,527 Stored in directory: /tmp/pip-ephem-wheel-cache-2jcd9net/wheels/09/67/d2/c02535cfb26bd8acc53f29f4fb05a8c677853c54308b586fb4 2026-05-14T03:54:39,542 Successfully built oligo-designer-toolsuite 2026-05-14T03:54:39,557 Removed build tracker: '/tmp/pip-build-tracker-21zsto4q'