2026-05-15T22:38:00,691 Created temporary directory: /tmp/pip-ephem-wheel-cache-ubazi1m6 2026-05-15T22:38:00,693 Created temporary directory: /tmp/pip-build-tracker-hvgi78oj 2026-05-15T22:38:00,694 Initialized build tracking at /tmp/pip-build-tracker-hvgi78oj 2026-05-15T22:38:00,694 Created build tracker: /tmp/pip-build-tracker-hvgi78oj 2026-05-15T22:38:00,695 Entered build tracker: /tmp/pip-build-tracker-hvgi78oj 2026-05-15T22:38:00,695 Created temporary directory: /tmp/pip-wheel-v5afnrj8 2026-05-15T22:38:00,698 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-15T22:38:00,701 Created temporary directory: /tmp/pip-ephem-wheel-cache-swujuw6f 2026-05-15T22:38:00,722 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-15T22:38:00,726 2 location(s) to search for versions of biocframe: 2026-05-15T22:38:00,726 * https://pypi.org/simple/biocframe/ 2026-05-15T22:38:00,726 * https://www.piwheels.org/simple/biocframe/ 2026-05-15T22:38:00,726 Fetching project page and analyzing links: https://pypi.org/simple/biocframe/ 2026-05-15T22:38:00,727 Getting page https://pypi.org/simple/biocframe/ 2026-05-15T22:38:00,729 Found index url https://pypi.org/simple 2026-05-15T22:38:00,964 Fetched page https://pypi.org/simple/biocframe/ as application/vnd.pypi.simple.v1+json 2026-05-15T22:38:00,986 Skipping link: No binaries permitted for biocframe: 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https://archive1.piwheels.org/simple/biocframe/BiocFrame-0.1-py3-none-any.whl#sha256=fa9561e603ecc2f03eb0967ee13a1b7c7d16978527fc41b7670113ee8863e170 (from https://www.piwheels.org/simple/biocframe/) 2026-05-15T22:38:01,304 Skipping link: not a file: https://www.piwheels.org/simple/biocframe/ 2026-05-15T22:38:01,305 Skipping link: not a file: https://pypi.org/simple/biocframe/ 2026-05-15T22:38:01,330 Given no hashes to check 1 links for project 'biocframe': discarding no candidates 2026-05-15T22:38:01,349 Collecting biocframe==0.7.3 2026-05-15T22:38:01,351 Created temporary directory: /tmp/pip-unpack-owsrt_ek 2026-05-15T22:38:01,502 Downloading biocframe-0.7.3.tar.gz (54 kB) 2026-05-15T22:38:01,646 Added biocframe==0.7.3 from https://files.pythonhosted.org/packages/74/13/5f1324b4b6cf60767d066b023c9977779c39f1b9a57c0f9e16bff57f2291/biocframe-0.7.3.tar.gz to build tracker '/tmp/pip-build-tracker-hvgi78oj' 2026-05-15T22:38:01,652 Created temporary directory: /tmp/pip-build-env-ks92_9qu 2026-05-15T22:38:01,657 Installing build dependencies: started 2026-05-15T22:38:01,658 Running command pip subprocess to install build dependencies 2026-05-15T22:38:02,775 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-15T22:38:03,209 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-15T22:38:03,232 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-15T22:38:05,064 Collecting setuptools>=46.1.0 2026-05-15T22:38:05,065 Obtaining dependency information for setuptools>=46.1.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-15T22:38:05,088 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-15T22:38:05,882 Collecting setuptools_scm[toml]>=5 2026-05-15T22:38:05,883 Obtaining dependency information for setuptools_scm[toml]>=5 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata 2026-05-15T22:38:05,898 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB) 2026-05-15T22:38:05,909 Discarding https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl#sha256=600c37b3fea2bb517f59d76792adae856d0b5ce7735b186e4cde804375251321 (from https://www.piwheels.org/simple/setuptools-scm/) (requires-python:>=3.10): Requested setuptools_scm>=5 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl#sha256=600c37b3fea2bb517f59d76792adae856d0b5ce7735b186e4cde804375251321 has inconsistent Name: expected 'setuptools_scm', but metadata has 'setuptools-scm' 2026-05-15T22:38:05,932 Using cached setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-15T22:38:06,166 Collecting wheel 2026-05-15T22:38:06,167 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-05-15T22:38:06,181 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-05-15T22:38:06,262 Collecting vcs-versioning>=1.0.0.dev0 2026-05-15T22:38:06,263 Obtaining dependency information for vcs-versioning>=1.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata 2026-05-15T22:38:06,278 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata (1.6 kB) 2026-05-15T22:38:06,464 Collecting packaging>=20 2026-05-15T22:38:06,464 Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-15T22:38:06,479 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-15T22:38:06,735 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-15T22:38:06,756 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-15T22:38:06,778 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-15T22:38:06,863 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-15T22:38:06,900 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-15T22:38:06,924 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-15T22:38:06,950 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-15T22:38:07,073 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-15T22:38:09,954 Installing collected packages: setuptools, packaging, wheel, vcs-versioning, setuptools_scm 2026-05-15T22:38:14,353 Creating /tmp/pip-build-env-ks92_9qu/overlay/local/bin 2026-05-15T22:38:14,355 changing mode of /tmp/pip-build-env-ks92_9qu/overlay/local/bin/wheel to 755 2026-05-15T22:38:14,666 changing mode of /tmp/pip-build-env-ks92_9qu/overlay/local/bin/vcs-versioning to 755 2026-05-15T22:38:14,777 changing mode of /tmp/pip-build-env-ks92_9qu/overlay/local/bin/setuptools-scm to 755 2026-05-15T22:38:14,811 Successfully installed packaging-26.2 setuptools-82.0.1 setuptools_scm-10.0.5 vcs-versioning-1.1.1 wheel-0.47.0 2026-05-15T22:38:15,113 Installing build dependencies: finished with status 'done' 2026-05-15T22:38:15,125 Getting requirements to build wheel: started 2026-05-15T22:38:15,127 Running command Getting requirements to build wheel 2026-05-15T22:38:15,901 running egg_info 2026-05-15T22:38:15,908 writing src/BiocFrame.egg-info/PKG-INFO 2026-05-15T22:38:15,913 writing dependency_links to src/BiocFrame.egg-info/dependency_links.txt 2026-05-15T22:38:15,917 writing requirements to src/BiocFrame.egg-info/requires.txt 2026-05-15T22:38:15,918 writing top-level names to src/BiocFrame.egg-info/top_level.txt 2026-05-15T22:38:15,962 /tmp/pip-build-env-ks92_9qu/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-15T22:38:15,963 return get_active_overrides().subprocess_timeout 2026-05-15T22:38:15,970 listing git files failed - pretending there aren't any 2026-05-15T22:38:15,976 reading manifest file 'src/BiocFrame.egg-info/SOURCES.txt' 2026-05-15T22:38:15,982 adding license file 'LICENSE.txt' 2026-05-15T22:38:15,986 writing manifest file 'src/BiocFrame.egg-info/SOURCES.txt' 2026-05-15T22:38:16,083 Getting requirements to build wheel: finished with status 'done' 2026-05-15T22:38:16,086 Created temporary directory: /tmp/pip-modern-metadata-1_v5ivdr 2026-05-15T22:38:16,089 Preparing metadata (pyproject.toml): started 2026-05-15T22:38:16,090 Running command Preparing metadata (pyproject.toml) 2026-05-15T22:38:16,779 running dist_info 2026-05-15T22:38:16,794 creating /tmp/pip-modern-metadata-1_v5ivdr/BiocFrame.egg-info 2026-05-15T22:38:16,795 writing /tmp/pip-modern-metadata-1_v5ivdr/BiocFrame.egg-info/PKG-INFO 2026-05-15T22:38:16,803 writing dependency_links to /tmp/pip-modern-metadata-1_v5ivdr/BiocFrame.egg-info/dependency_links.txt 2026-05-15T22:38:16,807 writing requirements to /tmp/pip-modern-metadata-1_v5ivdr/BiocFrame.egg-info/requires.txt 2026-05-15T22:38:16,809 writing top-level names to /tmp/pip-modern-metadata-1_v5ivdr/BiocFrame.egg-info/top_level.txt 2026-05-15T22:38:16,811 writing manifest file '/tmp/pip-modern-metadata-1_v5ivdr/BiocFrame.egg-info/SOURCES.txt' 2026-05-15T22:38:16,861 /tmp/pip-build-env-ks92_9qu/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-15T22:38:16,861 return get_active_overrides().subprocess_timeout 2026-05-15T22:38:16,872 listing git files failed - pretending there aren't any 2026-05-15T22:38:16,879 reading manifest file '/tmp/pip-modern-metadata-1_v5ivdr/BiocFrame.egg-info/SOURCES.txt' 2026-05-15T22:38:16,882 adding license file 'LICENSE.txt' 2026-05-15T22:38:16,885 writing manifest file '/tmp/pip-modern-metadata-1_v5ivdr/BiocFrame.egg-info/SOURCES.txt' 2026-05-15T22:38:16,888 creating '/tmp/pip-modern-metadata-1_v5ivdr/biocframe-0.7.3.dist-info' 2026-05-15T22:38:17,068 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-15T22:38:17,074 Source in /tmp/pip-wheel-v5afnrj8/biocframe_29fd5e500c154528b77b6dc973fe992d has version 0.7.3, which satisfies requirement biocframe==0.7.3 from https://files.pythonhosted.org/packages/74/13/5f1324b4b6cf60767d066b023c9977779c39f1b9a57c0f9e16bff57f2291/biocframe-0.7.3.tar.gz 2026-05-15T22:38:17,075 Removed biocframe==0.7.3 from https://files.pythonhosted.org/packages/74/13/5f1324b4b6cf60767d066b023c9977779c39f1b9a57c0f9e16bff57f2291/biocframe-0.7.3.tar.gz from build tracker '/tmp/pip-build-tracker-hvgi78oj' 2026-05-15T22:38:17,083 Created temporary directory: /tmp/pip-unpack-li417ebv 2026-05-15T22:38:17,083 Building wheels for collected packages: biocframe 2026-05-15T22:38:17,091 Created temporary directory: /tmp/pip-wheel-h4mxh2by 2026-05-15T22:38:17,092 Destination directory: /tmp/pip-wheel-h4mxh2by 2026-05-15T22:38:17,096 Building wheel for biocframe (pyproject.toml): started 2026-05-15T22:38:17,097 Running command Building wheel for biocframe (pyproject.toml) 2026-05-15T22:38:17,771 running bdist_wheel 2026-05-15T22:38:17,804 running build 2026-05-15T22:38:17,805 running build_py 2026-05-15T22:38:17,807 creating build/lib/biocframe 2026-05-15T22:38:17,809 copying src/biocframe/BiocFrame.py -> build/lib/biocframe 2026-05-15T22:38:17,813 copying src/biocframe/__init__.py -> build/lib/biocframe 2026-05-15T22:38:17,815 creating build/lib/biocframe/io 2026-05-15T22:38:17,816 copying src/biocframe/io/from_pandas.py -> build/lib/biocframe/io 2026-05-15T22:38:17,818 copying src/biocframe/io/__init__.py -> build/lib/biocframe/io 2026-05-15T22:38:17,820 running egg_info 2026-05-15T22:38:17,832 writing src/BiocFrame.egg-info/PKG-INFO 2026-05-15T22:38:17,837 writing dependency_links to src/BiocFrame.egg-info/dependency_links.txt 2026-05-15T22:38:17,840 writing requirements to src/BiocFrame.egg-info/requires.txt 2026-05-15T22:38:17,841 writing top-level names to src/BiocFrame.egg-info/top_level.txt 2026-05-15T22:38:17,871 /tmp/pip-build-env-ks92_9qu/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-15T22:38:17,872 return get_active_overrides().subprocess_timeout 2026-05-15T22:38:17,877 listing git files failed - pretending there aren't any 2026-05-15T22:38:17,882 reading manifest file 'src/BiocFrame.egg-info/SOURCES.txt' 2026-05-15T22:38:17,886 adding license file 'LICENSE.txt' 2026-05-15T22:38:17,889 writing manifest file 'src/BiocFrame.egg-info/SOURCES.txt' 2026-05-15T22:38:17,909 installing to build/bdist.linux-armv7l/wheel 2026-05-15T22:38:17,909 running install 2026-05-15T22:38:17,933 running install_lib 2026-05-15T22:38:17,942 creating build/bdist.linux-armv7l/wheel 2026-05-15T22:38:17,944 creating build/bdist.linux-armv7l/wheel/biocframe 2026-05-15T22:38:17,945 copying build/lib/biocframe/BiocFrame.py -> build/bdist.linux-armv7l/wheel/./biocframe 2026-05-15T22:38:17,949 creating build/bdist.linux-armv7l/wheel/biocframe/io 2026-05-15T22:38:17,950 copying build/lib/biocframe/io/from_pandas.py -> build/bdist.linux-armv7l/wheel/./biocframe/io 2026-05-15T22:38:17,952 copying build/lib/biocframe/io/__init__.py -> build/bdist.linux-armv7l/wheel/./biocframe/io 2026-05-15T22:38:17,954 copying build/lib/biocframe/__init__.py -> build/bdist.linux-armv7l/wheel/./biocframe 2026-05-15T22:38:17,955 running install_egg_info 2026-05-15T22:38:17,965 Copying src/BiocFrame.egg-info to build/bdist.linux-armv7l/wheel/./BiocFrame-0.7.3-py3.11.egg-info 2026-05-15T22:38:17,976 running install_scripts 2026-05-15T22:38:17,987 creating build/bdist.linux-armv7l/wheel/biocframe-0.7.3.dist-info/WHEEL 2026-05-15T22:38:17,989 creating '/tmp/pip-wheel-h4mxh2by/.tmp-w2enbhh8/biocframe-0.7.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-15T22:38:18,000 adding 'biocframe/BiocFrame.py' 2026-05-15T22:38:18,002 adding 'biocframe/__init__.py' 2026-05-15T22:38:18,003 adding 'biocframe/io/__init__.py' 2026-05-15T22:38:18,004 adding 'biocframe/io/from_pandas.py' 2026-05-15T22:38:18,007 adding 'biocframe-0.7.3.dist-info/licenses/LICENSE.txt' 2026-05-15T22:38:18,009 adding 'biocframe-0.7.3.dist-info/METADATA' 2026-05-15T22:38:18,010 adding 'biocframe-0.7.3.dist-info/WHEEL' 2026-05-15T22:38:18,011 adding 'biocframe-0.7.3.dist-info/top_level.txt' 2026-05-15T22:38:18,012 adding 'biocframe-0.7.3.dist-info/RECORD' 2026-05-15T22:38:18,014 removing build/bdist.linux-armv7l/wheel 2026-05-15T22:38:18,122 Building wheel for biocframe (pyproject.toml): finished with status 'done' 2026-05-15T22:38:18,127 Created wheel for biocframe: filename=biocframe-0.7.3-py3-none-any.whl size=22151 sha256=7ed9f4db084dcfc7d5519ea5b8fb7f27e27aa8316c8d05bddec2326da0dea045 2026-05-15T22:38:18,128 Stored in directory: /tmp/pip-ephem-wheel-cache-swujuw6f/wheels/1e/6c/63/4810c977503f9b01a662b4899f702af1acac77e76231318342 2026-05-15T22:38:18,141 Successfully built biocframe 2026-05-15T22:38:18,145 Removed build tracker: '/tmp/pip-build-tracker-hvgi78oj'