2026-05-16T06:36:50,130 Created temporary directory: /tmp/pip-ephem-wheel-cache-mh1h1uke
2026-05-16T06:36:50,132 Created temporary directory: /tmp/pip-build-tracker-byzpswej
2026-05-16T06:36:50,133 Initialized build tracking at /tmp/pip-build-tracker-byzpswej
2026-05-16T06:36:50,133 Created build tracker: /tmp/pip-build-tracker-byzpswej
2026-05-16T06:36:50,133 Entered build tracker: /tmp/pip-build-tracker-byzpswej
2026-05-16T06:36:50,134 Created temporary directory: /tmp/pip-wheel-8m3nlmbc
2026-05-16T06:36:50,137 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-16T06:36:50,139 Created temporary directory: /tmp/pip-ephem-wheel-cache-own1mccl
2026-05-16T06:36:50,160 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-16T06:36:50,164 2 location(s) to search for versions of skimgpt:
2026-05-16T06:36:50,164 * https://pypi.org/simple/skimgpt/
2026-05-16T06:36:50,164 * https://www.piwheels.org/simple/skimgpt/
2026-05-16T06:36:50,165 Fetching project page and analyzing links: https://pypi.org/simple/skimgpt/
2026-05-16T06:36:50,165 Getting page https://pypi.org/simple/skimgpt/
2026-05-16T06:36:50,167 Found index url https://pypi.org/simple
2026-05-16T06:36:50,394 Fetched page https://pypi.org/simple/skimgpt/ as application/vnd.pypi.simple.v1+json
2026-05-16T06:36:50,399   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/5b/e4/159fa6d31e797670c16a966f329e887553320fd41121ecbc37f1f42a927b/skimgpt-1.0.0-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,400   Found link https://files.pythonhosted.org/packages/4d/9e/f1e24804429e7da0e9280b116b97ba5810a130b52dd9ccecceadd6ccf55e/skimgpt-1.0.0.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.0
2026-05-16T06:36:50,400   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/7c/53/cc52c8549904b6c89d007f1068a31346c3e75f09cbbc90a8189e4f60f874/skimgpt-1.0.5-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,401   Found link https://files.pythonhosted.org/packages/38/40/2a659285343186f5bb160e4163f8f4e5b10687be47c4546ad4a8d3c6c16e/skimgpt-1.0.5.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.5
2026-05-16T06:36:50,402   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/ab/06/547b283132634bdd63656d313a025913d71ee5b1d612f3bfcc2d98331b99/skimgpt-1.0.6-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,403   Found link https://files.pythonhosted.org/packages/e4/49/56dc12f28a9a69bec4368adfa335368866c377cf787db7cff12019293df8/skimgpt-1.0.6.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.6
2026-05-16T06:36:50,404   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/36/a3/b40a6e16d6d7e25fcf2945fbc1c4d449933135d27a10f649b276f62ab304/skimgpt-1.1-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,405   Found link https://files.pythonhosted.org/packages/85/01/d401992a768ff3495f5e69595ef2fe1fd7f8c7dc5c3c433237cdafd0769e/skimgpt-1.1.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.1
2026-05-16T06:36:50,406   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/80/50/375197c9b2b61c37e2b8d8cd33499efdaaf60c1e0909dc5b8642ab27dfa8/skimgpt-1.2-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,407   Found link https://files.pythonhosted.org/packages/58/fb/fb5ef967d884a2fbf8328f2f83d016a56044c34950ab8b08e638fea90bec/skimgpt-1.2.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.2
2026-05-16T06:36:50,407   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/ce/3d/bcd1dfe57b3ee8c801068f70b93a0ec837f223c9ba58579fcf5e37f5f3e5/skimgpt-2.0.0-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,409   Found link https://files.pythonhosted.org/packages/42/85/156a9d7f9d57005e8bdee47a32d8a03e67c8945b2aa566f5fe69358a91b7/skimgpt-2.0.0.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.0
2026-05-16T06:36:50,409   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/65/51/2ba8c6987885f5fe0d82a0a1ab74c7fbd2dfb314b6cb3bb31925b08f1b8a/skimgpt-2.0.1-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,410   Found link https://files.pythonhosted.org/packages/ed/db/eacff4a9448c070b51b770a6c2f701fb1b2d837b0aea32ae7a08abe612f4/skimgpt-2.0.1.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.1
2026-05-16T06:36:50,410   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/1f/74/f03fc03f92872faaaae646a7a32cda4c689b4a898282ac67453e42b431d4/skimgpt-2.0.2-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,411   Found link https://files.pythonhosted.org/packages/ba/7a/a2a60fd5909477a7a2ea3f426c4fc018255de73507a1a00c5cf194dd5a70/skimgpt-2.0.2.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.2
2026-05-16T06:36:50,412   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/41/df/aa4d2bb2c2e59975ad7201c45e2ed0fd4b2a551ef9d26ef2a42712b8e6e3/skimgpt-2.0.3-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,413   Found link https://files.pythonhosted.org/packages/a7/64/d1b8e1d7ed026d6a18876525b616aa86575b8766ca6175b75b21793253a6/skimgpt-2.0.3.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.3
2026-05-16T06:36:50,413   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/80/9b/198730dbc0775a5254c44f95f64939dbadf4467f015097a1e65c61749cd9/skimgpt-2.0.4-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,415   Found link https://files.pythonhosted.org/packages/92/e6/e7cfaa38b3220939c47f97e527e1a65c146a4d5cfaf57b624139bc21b6d8/skimgpt-2.0.4.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.4
2026-05-16T06:36:50,415   Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/5c/e4/fd7ed50d6b4aee928ab42f6e9ea4e8c8d7e39362ada86c59026b0057c5be/skimgpt-2.1-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,416   Found link https://files.pythonhosted.org/packages/41/06/f4bd1b81d7678d3fe7c66cb06b977a45e8b9be03354501ee99e3a9aa6b12/skimgpt-2.1.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.1
2026-05-16T06:36:50,417 Fetching project page and analyzing links: https://www.piwheels.org/simple/skimgpt/
2026-05-16T06:36:50,418 Getting page https://www.piwheels.org/simple/skimgpt/
2026-05-16T06:36:50,419 Found index url https://www.piwheels.org/simple
2026-05-16T06:36:50,588 Fetched page https://www.piwheels.org/simple/skimgpt/ as text/html
2026-05-16T06:36:50,592   Skipping link: No binaries permitted for skimgpt: https://www.piwheels.org/simple/skimgpt/skimgpt-2.1-py3-none-any.whl#sha256=95111b5d41f51f096d7581f210e2fcfab5b4956c22d52c6edc9342ddf4f886b8 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,592   Skipping link: No binaries permitted for skimgpt: https://www.piwheels.org/simple/skimgpt/skimgpt-2.0.3-py3-none-any.whl#sha256=96274a5d0db86ac16b3f8dbe36bf52ff08239c4faf4513285ac5bac8d5c3aeb0 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,593   Skipping link: No binaries permitted for skimgpt: https://www.piwheels.org/simple/skimgpt/skimgpt-2.0.2-py3-none-any.whl#sha256=7bd216923629bb130dcd874dd9f1defd17de020c45835f04ecf09fffb5707595 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,594   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-2.0.1-py3-none-any.whl#sha256=7facf52ed40df5f12628d4a87082df406a7a4d6d4547516d873870760e21790f (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,594   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-2.0.0-py3-none-any.whl#sha256=02e3c90f86cd6a5371cd622874f4f57fd3679d08cb1a2a1b5cf236552e9b003c (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,595   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.2-py3-none-any.whl#sha256=b4c4adbd30536892239d0d70fe47125b6e254968cae2cc74d10b71df90f3f55e (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,595   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.1-py3-none-any.whl#sha256=480c4ea401f7b080c2c4f06dbde341d6c4dba2629b04b574e64e4fe18979326b (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,596   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.6-py3-none-any.whl#sha256=a974ad27fdafa96f8e13df016211ba558c585668756dc22dc6bab39e6ad87f5c (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,596   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.5-py3-none-any.whl#sha256=4e4532d70e84030ef8e4886eadc21b1bec5f8478e56e5178ffe3e4b10d0e5872 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,597   Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.0-py3-none-any.whl#sha256=4d72bc94b7b7efab9758f02986de73ee8e6624597343dba106c538245c978553 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10)
2026-05-16T06:36:50,597 Skipping link: not a file: https://www.piwheels.org/simple/skimgpt/
2026-05-16T06:36:50,598 Skipping link: not a file: https://pypi.org/simple/skimgpt/
2026-05-16T06:36:50,617 Given no hashes to check 1 links for project 'skimgpt': discarding no candidates
2026-05-16T06:36:50,635 Collecting skimgpt==2.0.4
2026-05-16T06:36:50,637   Created temporary directory: /tmp/pip-unpack-2smlhc9s
2026-05-16T06:36:50,864   Downloading skimgpt-2.0.4.tar.gz (242 kB)
2026-05-16T06:36:51,116   Added skimgpt==2.0.4 from https://files.pythonhosted.org/packages/92/e6/e7cfaa38b3220939c47f97e527e1a65c146a4d5cfaf57b624139bc21b6d8/skimgpt-2.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-byzpswej'
2026-05-16T06:36:51,124   Created temporary directory: /tmp/pip-build-env-68spcq7t
2026-05-16T06:36:51,129   Installing build dependencies: started
2026-05-16T06:36:51,130   Running command pip subprocess to install build dependencies
2026-05-16T06:36:52,264   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-05-16T06:36:52,675   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-16T06:36:52,701   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-16T06:36:54,485   Collecting setuptools>=45
2026-05-16T06:36:54,486     Obtaining dependency information for setuptools>=45 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-05-16T06:36:54,499     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-05-16T06:36:54,739   Collecting wheel
2026-05-16T06:36:54,741     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-05-16T06:36:54,772     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-05-16T06:36:55,121   Collecting setuptools_scm[toml]>=6.2
2026-05-16T06:36:55,122     Obtaining dependency information for setuptools_scm[toml]>=6.2 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata
2026-05-16T06:36:55,137     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB)
2026-05-16T06:36:55,148   Discarding https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl#sha256=600c37b3fea2bb517f59d76792adae856d0b5ce7735b186e4cde804375251321 (from https://www.piwheels.org/simple/setuptools-scm/) (requires-python:>=3.10): Requested setuptools_scm>=6.2 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl#sha256=600c37b3fea2bb517f59d76792adae856d0b5ce7735b186e4cde804375251321 has inconsistent Name: expected 'setuptools_scm', but metadata has 'setuptools-scm'
2026-05-16T06:36:55,171     Using cached setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-05-16T06:36:55,354   Collecting packaging>=24.0
2026-05-16T06:36:55,355     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-05-16T06:36:55,369     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-05-16T06:36:55,453   Collecting vcs-versioning>=1.0.0.dev0
2026-05-16T06:36:55,454     Obtaining dependency information for vcs-versioning>=1.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata
2026-05-16T06:36:55,468     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata (1.6 kB)
2026-05-16T06:36:55,705   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-05-16T06:36:55,753   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-05-16T06:36:55,771   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-05-16T06:36:55,850   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-05-16T06:36:55,905   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-05-16T06:36:55,940   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-05-16T06:36:55,985   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-05-16T06:36:56,075   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-05-16T06:36:58,817   Installing collected packages: setuptools, packaging, wheel, vcs-versioning, setuptools_scm
2026-05-16T06:37:02,299     Creating /tmp/pip-build-env-68spcq7t/overlay/local/bin
2026-05-16T06:37:02,302     changing mode of /tmp/pip-build-env-68spcq7t/overlay/local/bin/wheel to 755
2026-05-16T06:37:02,602     changing mode of /tmp/pip-build-env-68spcq7t/overlay/local/bin/vcs-versioning to 755
2026-05-16T06:37:02,706     changing mode of /tmp/pip-build-env-68spcq7t/overlay/local/bin/setuptools-scm to 755
2026-05-16T06:37:02,740   Successfully installed packaging-26.2 setuptools-82.0.1 setuptools_scm-10.0.5 vcs-versioning-1.1.1 wheel-0.47.0
2026-05-16T06:37:03,041   Installing build dependencies: finished with status 'done'
2026-05-16T06:37:03,048   Getting requirements to build wheel: started
2026-05-16T06:37:03,050   Running command Getting requirements to build wheel
2026-05-16T06:37:03,793   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-05-16T06:37:03,793   !!

2026-05-16T06:37:03,794           ********************************************************************************
2026-05-16T06:37:03,795           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-05-16T06:37:03,796           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-05-16T06:37:03,796           or your builds will no longer be supported.

2026-05-16T06:37:03,797           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-16T06:37:03,798           ********************************************************************************

2026-05-16T06:37:03,799   !!
2026-05-16T06:37:03,799     corresp(dist, value, root_dir)
2026-05-16T06:37:03,879   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-16T06:37:03,879   !!

2026-05-16T06:37:03,880           ********************************************************************************
2026-05-16T06:37:03,881           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-16T06:37:03,882           License :: OSI Approved :: MIT License

2026-05-16T06:37:03,884           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-16T06:37:03,885           ********************************************************************************

2026-05-16T06:37:03,886   !!
2026-05-16T06:37:03,886     dist._finalize_license_expression()
2026-05-16T06:37:03,887   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-16T06:37:03,888   !!

2026-05-16T06:37:03,889           ********************************************************************************
2026-05-16T06:37:03,889           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-16T06:37:03,891           License :: OSI Approved :: MIT License

2026-05-16T06:37:03,892           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-16T06:37:03,893           ********************************************************************************

2026-05-16T06:37:03,894   !!
2026-05-16T06:37:03,896     self._finalize_license_expression()
2026-05-16T06:37:03,896   running egg_info
2026-05-16T06:37:03,900   writing skimgpt.egg-info/PKG-INFO
2026-05-16T06:37:03,907   writing dependency_links to skimgpt.egg-info/dependency_links.txt
2026-05-16T06:37:03,910   writing entry points to skimgpt.egg-info/entry_points.txt
2026-05-16T06:37:03,914   writing requirements to skimgpt.egg-info/requires.txt
2026-05-16T06:37:03,915   writing top-level names to skimgpt.egg-info/top_level.txt
2026-05-16T06:37:03,966   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-16T06:37:03,966     return get_active_overrides().subprocess_timeout
2026-05-16T06:37:03,973   listing git files failed - pretending there aren't any
2026-05-16T06:37:03,978   reading manifest file 'skimgpt.egg-info/SOURCES.txt'
2026-05-16T06:37:03,984   reading manifest template 'MANIFEST.in'
2026-05-16T06:37:03,986   warning: no files found matching 'main.py'
2026-05-16T06:37:03,987   warning: no files found matching 'run_multiple_analyses.sh'
2026-05-16T06:37:03,988   warning: no files found matching '*.py' under directory 'src'
2026-05-16T06:37:03,988   warning: no files found matching '*.sh' under directory 'src'
2026-05-16T06:37:03,990   warning: no previously-included files found matching 'test/*'
2026-05-16T06:37:03,991   warning: no previously-included files found matching '.git*'
2026-05-16T06:37:03,991   warning: no previously-included files found matching '.pytest_cache'
2026-05-16T06:37:03,992   warning: no previously-included files found matching '__pycache__'
2026-05-16T06:37:03,993   warning: no previously-included files found matching '*.pyc'
2026-05-16T06:37:03,993   warning: no previously-included files found matching '.ipynb_checkpoints'
2026-05-16T06:37:03,998   writing manifest file 'skimgpt.egg-info/SOURCES.txt'
2026-05-16T06:37:04,103   Getting requirements to build wheel: finished with status 'done'
2026-05-16T06:37:04,107   Created temporary directory: /tmp/pip-modern-metadata-kb24q1on
2026-05-16T06:37:04,110   Preparing metadata (pyproject.toml): started
2026-05-16T06:37:04,111   Running command Preparing metadata (pyproject.toml)
2026-05-16T06:37:04,854   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-05-16T06:37:04,855   !!

2026-05-16T06:37:04,856           ********************************************************************************
2026-05-16T06:37:04,856           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-05-16T06:37:04,858           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-05-16T06:37:04,858           or your builds will no longer be supported.

2026-05-16T06:37:04,859           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-16T06:37:04,860           ********************************************************************************

2026-05-16T06:37:04,861   !!
2026-05-16T06:37:04,861     corresp(dist, value, root_dir)
2026-05-16T06:37:04,933   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-16T06:37:04,934   !!

2026-05-16T06:37:04,935           ********************************************************************************
2026-05-16T06:37:04,936           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-16T06:37:04,937           License :: OSI Approved :: MIT License

2026-05-16T06:37:04,938           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-16T06:37:04,939           ********************************************************************************

2026-05-16T06:37:04,940   !!
2026-05-16T06:37:04,941     dist._finalize_license_expression()
2026-05-16T06:37:04,941   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-16T06:37:04,942   !!

2026-05-16T06:37:04,943           ********************************************************************************
2026-05-16T06:37:04,944           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-16T06:37:04,946           License :: OSI Approved :: MIT License

2026-05-16T06:37:04,947           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-16T06:37:04,948           ********************************************************************************

2026-05-16T06:37:04,950   !!
2026-05-16T06:37:04,951     self._finalize_license_expression()
2026-05-16T06:37:04,951   running dist_info
2026-05-16T06:37:04,964   creating /tmp/pip-modern-metadata-kb24q1on/skimgpt.egg-info
2026-05-16T06:37:04,966   writing /tmp/pip-modern-metadata-kb24q1on/skimgpt.egg-info/PKG-INFO
2026-05-16T06:37:04,974   writing dependency_links to /tmp/pip-modern-metadata-kb24q1on/skimgpt.egg-info/dependency_links.txt
2026-05-16T06:37:04,977   writing entry points to /tmp/pip-modern-metadata-kb24q1on/skimgpt.egg-info/entry_points.txt
2026-05-16T06:37:04,980   writing requirements to /tmp/pip-modern-metadata-kb24q1on/skimgpt.egg-info/requires.txt
2026-05-16T06:37:04,981   writing top-level names to /tmp/pip-modern-metadata-kb24q1on/skimgpt.egg-info/top_level.txt
2026-05-16T06:37:04,983   writing manifest file '/tmp/pip-modern-metadata-kb24q1on/skimgpt.egg-info/SOURCES.txt'
2026-05-16T06:37:05,025   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-16T06:37:05,026     return get_active_overrides().subprocess_timeout
2026-05-16T06:37:05,036   listing git files failed - pretending there aren't any
2026-05-16T06:37:05,042   reading manifest file '/tmp/pip-modern-metadata-kb24q1on/skimgpt.egg-info/SOURCES.txt'
2026-05-16T06:37:05,044   reading manifest template 'MANIFEST.in'
2026-05-16T06:37:05,045   warning: no files found matching 'main.py'
2026-05-16T06:37:05,046   warning: no files found matching 'run_multiple_analyses.sh'
2026-05-16T06:37:05,047   warning: no files found matching '*.py' under directory 'src'
2026-05-16T06:37:05,047   warning: no files found matching '*.sh' under directory 'src'
2026-05-16T06:37:05,049   warning: no previously-included files found matching 'test/*'
2026-05-16T06:37:05,050   warning: no previously-included files found matching '.git*'
2026-05-16T06:37:05,051   warning: no previously-included files found matching '.pytest_cache'
2026-05-16T06:37:05,052   warning: no previously-included files found matching '__pycache__'
2026-05-16T06:37:05,053   warning: no previously-included files found matching '*.pyc'
2026-05-16T06:37:05,054   warning: no previously-included files found matching '.ipynb_checkpoints'
2026-05-16T06:37:05,057   writing manifest file '/tmp/pip-modern-metadata-kb24q1on/skimgpt.egg-info/SOURCES.txt'
2026-05-16T06:37:05,058   creating '/tmp/pip-modern-metadata-kb24q1on/skimgpt-2.0.4.dist-info'
2026-05-16T06:37:05,189   Preparing metadata (pyproject.toml): finished with status 'done'
2026-05-16T06:37:05,196   Source in /tmp/pip-wheel-8m3nlmbc/skimgpt_c84f23e5b043459ea1d0cca1bf80b3c1 has version 2.0.4, which satisfies requirement skimgpt==2.0.4 from https://files.pythonhosted.org/packages/92/e6/e7cfaa38b3220939c47f97e527e1a65c146a4d5cfaf57b624139bc21b6d8/skimgpt-2.0.4.tar.gz
2026-05-16T06:37:05,197   Removed skimgpt==2.0.4 from https://files.pythonhosted.org/packages/92/e6/e7cfaa38b3220939c47f97e527e1a65c146a4d5cfaf57b624139bc21b6d8/skimgpt-2.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-byzpswej'
2026-05-16T06:37:05,203 Created temporary directory: /tmp/pip-unpack-m858zvpw
2026-05-16T06:37:05,204 Building wheels for collected packages: skimgpt
2026-05-16T06:37:05,209   Created temporary directory: /tmp/pip-wheel-r7uce8xw
2026-05-16T06:37:05,210   Destination directory: /tmp/pip-wheel-r7uce8xw
2026-05-16T06:37:05,213   Building wheel for skimgpt (pyproject.toml): started
2026-05-16T06:37:05,214   Running command Building wheel for skimgpt (pyproject.toml)
2026-05-16T06:37:05,885   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-05-16T06:37:05,885   !!

2026-05-16T06:37:05,886           ********************************************************************************
2026-05-16T06:37:05,887           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-05-16T06:37:05,888           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-05-16T06:37:05,888           or your builds will no longer be supported.

2026-05-16T06:37:05,889           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-16T06:37:05,890           ********************************************************************************

2026-05-16T06:37:05,891   !!
2026-05-16T06:37:05,891     corresp(dist, value, root_dir)
2026-05-16T06:37:05,952   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-16T06:37:05,952   !!

2026-05-16T06:37:05,953           ********************************************************************************
2026-05-16T06:37:05,954           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-16T06:37:05,955           License :: OSI Approved :: MIT License

2026-05-16T06:37:05,956           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-16T06:37:05,956           ********************************************************************************

2026-05-16T06:37:05,957   !!
2026-05-16T06:37:05,958     dist._finalize_license_expression()
2026-05-16T06:37:05,958   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-05-16T06:37:05,959   !!

2026-05-16T06:37:05,960           ********************************************************************************
2026-05-16T06:37:05,961           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-05-16T06:37:05,963           License :: OSI Approved :: MIT License

2026-05-16T06:37:05,964           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-05-16T06:37:05,964           ********************************************************************************

2026-05-16T06:37:05,966   !!
2026-05-16T06:37:05,966     self._finalize_license_expression()
2026-05-16T06:37:05,967   running bdist_wheel
2026-05-16T06:37:05,987   running build
2026-05-16T06:37:05,987   running build_py
2026-05-16T06:37:05,989   creating build/lib/skimgpt
2026-05-16T06:37:05,991   copying skimgpt/main.py -> build/lib/skimgpt
2026-05-16T06:37:05,994   copying skimgpt/prompt_library.py -> build/lib/skimgpt
2026-05-16T06:37:05,997   copying skimgpt/retry.py -> build/lib/skimgpt
2026-05-16T06:37:05,999   copying skimgpt/pubmed_fetcher.py -> build/lib/skimgpt
2026-05-16T06:37:06,001   copying skimgpt/relevance_helper.py -> build/lib/skimgpt
2026-05-16T06:37:06,004   copying skimgpt/relevance_triton.py -> build/lib/skimgpt
2026-05-16T06:37:06,006   copying skimgpt/relevance_chtc.py -> build/lib/skimgpt
2026-05-16T06:37:06,009   copying skimgpt/utils.py -> build/lib/skimgpt
2026-05-16T06:37:06,011   copying skimgpt/classifier.py -> build/lib/skimgpt
2026-05-16T06:37:06,014   copying skimgpt/scoring_guidelines.py -> build/lib/skimgpt
2026-05-16T06:37:06,016   copying skimgpt/eval_JSON_results.py -> build/lib/skimgpt
2026-05-16T06:37:06,018   copying skimgpt/triton_client.py -> build/lib/skimgpt
2026-05-16T06:37:06,021   copying skimgpt/htcondor_helper.py -> build/lib/skimgpt
2026-05-16T06:37:06,023   copying skimgpt/cost_estimator.py -> build/lib/skimgpt
2026-05-16T06:37:06,025   copying skimgpt/__init__.py -> build/lib/skimgpt
2026-05-16T06:37:06,027   copying skimgpt/skim_and_km_api.py -> build/lib/skimgpt
2026-05-16T06:37:06,030   creating build/lib/skimgpt/visualization
2026-05-16T06:37:06,031   copying skimgpt/visualization/bayesian_ci.py -> build/lib/skimgpt/visualization
2026-05-16T06:37:06,033   copying skimgpt/visualization/hyp_stats.py -> build/lib/skimgpt/visualization
2026-05-16T06:37:06,036   copying skimgpt/visualization/__init__.py -> build/lib/skimgpt/visualization
2026-05-16T06:37:06,037   copying skimgpt/visualization/plot_hyp_stats.py -> build/lib/skimgpt/visualization
2026-05-16T06:37:06,040   copying skimgpt/visualization/plot_separate_runs.py -> build/lib/skimgpt/visualization
2026-05-16T06:37:06,041   running egg_info
2026-05-16T06:37:06,054   writing skimgpt.egg-info/PKG-INFO
2026-05-16T06:37:06,059   writing dependency_links to skimgpt.egg-info/dependency_links.txt
2026-05-16T06:37:06,061   writing entry points to skimgpt.egg-info/entry_points.txt
2026-05-16T06:37:06,064   writing requirements to skimgpt.egg-info/requires.txt
2026-05-16T06:37:06,064   writing top-level names to skimgpt.egg-info/top_level.txt
2026-05-16T06:37:06,098   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-16T06:37:06,098     return get_active_overrides().subprocess_timeout
2026-05-16T06:37:06,104   listing git files failed - pretending there aren't any
2026-05-16T06:37:06,109   reading manifest file 'skimgpt.egg-info/SOURCES.txt'
2026-05-16T06:37:06,113   reading manifest template 'MANIFEST.in'
2026-05-16T06:37:06,114   warning: no files found matching 'main.py'
2026-05-16T06:37:06,115   warning: no files found matching 'run_multiple_analyses.sh'
2026-05-16T06:37:06,116   warning: no files found matching '*.py' under directory 'src'
2026-05-16T06:37:06,116   warning: no files found matching '*.sh' under directory 'src'
2026-05-16T06:37:06,118   warning: no previously-included files found matching 'test/*'
2026-05-16T06:37:06,119   warning: no previously-included files found matching '.git*'
2026-05-16T06:37:06,119   warning: no previously-included files found matching '.pytest_cache'
2026-05-16T06:37:06,120   warning: no previously-included files found matching '__pycache__'
2026-05-16T06:37:06,120   warning: no previously-included files found matching '*.pyc'
2026-05-16T06:37:06,121   warning: no previously-included files found matching '.ipynb_checkpoints'
2026-05-16T06:37:06,126   writing manifest file 'skimgpt.egg-info/SOURCES.txt'
2026-05-16T06:37:06,129   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.CVD_HormonevsStatins' is absent from the `packages` configuration.
2026-05-16T06:37:06,129   !!

2026-05-16T06:37:06,130           ********************************************************************************
2026-05-16T06:37:06,131           ############################
2026-05-16T06:37:06,132           # Package would be ignored #
2026-05-16T06:37:06,132           ############################
2026-05-16T06:37:06,133           Python recognizes 'skimgpt.visualization.example_data.CVD_HormonevsStatins' as an importable package[^1],
2026-05-16T06:37:06,133           but it is absent from setuptools' `packages` configuration.

2026-05-16T06:37:06,134           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-16T06:37:06,135           package, please make sure that 'skimgpt.visualization.example_data.CVD_HormonevsStatins' is explicitly added
2026-05-16T06:37:06,135           to the `packages` configuration field.

2026-05-16T06:37:06,137           Alternatively, you can also rely on setuptools' discovery methods
2026-05-16T06:37:06,137           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-16T06:37:06,138           instead of `find_packages(...)`/`find:`).

2026-05-16T06:37:06,139           You can read more about "package discovery" on setuptools documentation page:

2026-05-16T06:37:06,140           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-16T06:37:06,141           If you don't want 'skimgpt.visualization.example_data.CVD_HormonevsStatins' to be distributed and are
2026-05-16T06:37:06,141           already explicitly excluding 'skimgpt.visualization.example_data.CVD_HormonevsStatins' via
2026-05-16T06:37:06,141           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-16T06:37:06,142           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-16T06:37:06,142           combination with a more fine grained `package-data` configuration.

2026-05-16T06:37:06,143           You can read more about "package data files" on setuptools documentation page:

2026-05-16T06:37:06,144           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-16T06:37:06,145           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-16T06:37:06,145                 even if it does not contain any `.py` files.
2026-05-16T06:37:06,146                 On the other hand, currently there is no concept of package data
2026-05-16T06:37:06,146                 directory, all directories are treated like packages.
2026-05-16T06:37:06,147           ********************************************************************************

2026-05-16T06:37:06,147   !!
2026-05-16T06:37:06,148     check.warn(importable)
2026-05-16T06:37:06,148   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.autism_GPvsVaccine' is absent from the `packages` configuration.
2026-05-16T06:37:06,149   !!

2026-05-16T06:37:06,150           ********************************************************************************
2026-05-16T06:37:06,150           ############################
2026-05-16T06:37:06,150           # Package would be ignored #
2026-05-16T06:37:06,151           ############################
2026-05-16T06:37:06,151           Python recognizes 'skimgpt.visualization.example_data.autism_GPvsVaccine' as an importable package[^1],
2026-05-16T06:37:06,152           but it is absent from setuptools' `packages` configuration.

2026-05-16T06:37:06,153           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-16T06:37:06,153           package, please make sure that 'skimgpt.visualization.example_data.autism_GPvsVaccine' is explicitly added
2026-05-16T06:37:06,154           to the `packages` configuration field.

2026-05-16T06:37:06,155           Alternatively, you can also rely on setuptools' discovery methods
2026-05-16T06:37:06,155           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-16T06:37:06,156           instead of `find_packages(...)`/`find:`).

2026-05-16T06:37:06,157           You can read more about "package discovery" on setuptools documentation page:

2026-05-16T06:37:06,158           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-16T06:37:06,159           If you don't want 'skimgpt.visualization.example_data.autism_GPvsVaccine' to be distributed and are
2026-05-16T06:37:06,159           already explicitly excluding 'skimgpt.visualization.example_data.autism_GPvsVaccine' via
2026-05-16T06:37:06,160           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-16T06:37:06,160           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-16T06:37:06,160           combination with a more fine grained `package-data` configuration.

2026-05-16T06:37:06,161           You can read more about "package data files" on setuptools documentation page:

2026-05-16T06:37:06,163           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-16T06:37:06,164           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-16T06:37:06,165                 even if it does not contain any `.py` files.
2026-05-16T06:37:06,165                 On the other hand, currently there is no concept of package data
2026-05-16T06:37:06,166                 directory, all directories are treated like packages.
2026-05-16T06:37:06,166           ********************************************************************************

2026-05-16T06:37:06,167   !!
2026-05-16T06:37:06,167     check.warn(importable)
2026-05-16T06:37:06,168   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.autism_microbiomeVsGP' is absent from the `packages` configuration.
2026-05-16T06:37:06,168   !!

2026-05-16T06:37:06,169           ********************************************************************************
2026-05-16T06:37:06,169           ############################
2026-05-16T06:37:06,170           # Package would be ignored #
2026-05-16T06:37:06,171           ############################
2026-05-16T06:37:06,171           Python recognizes 'skimgpt.visualization.example_data.autism_microbiomeVsGP' as an importable package[^1],
2026-05-16T06:37:06,171           but it is absent from setuptools' `packages` configuration.

2026-05-16T06:37:06,172           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-16T06:37:06,173           package, please make sure that 'skimgpt.visualization.example_data.autism_microbiomeVsGP' is explicitly added
2026-05-16T06:37:06,173           to the `packages` configuration field.

2026-05-16T06:37:06,174           Alternatively, you can also rely on setuptools' discovery methods
2026-05-16T06:37:06,175           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-16T06:37:06,175           instead of `find_packages(...)`/`find:`).

2026-05-16T06:37:06,176           You can read more about "package discovery" on setuptools documentation page:

2026-05-16T06:37:06,178           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-16T06:37:06,179           If you don't want 'skimgpt.visualization.example_data.autism_microbiomeVsGP' to be distributed and are
2026-05-16T06:37:06,180           already explicitly excluding 'skimgpt.visualization.example_data.autism_microbiomeVsGP' via
2026-05-16T06:37:06,180           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-16T06:37:06,181           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-16T06:37:06,181           combination with a more fine grained `package-data` configuration.

2026-05-16T06:37:06,182           You can read more about "package data files" on setuptools documentation page:

2026-05-16T06:37:06,183           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-16T06:37:06,185           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-16T06:37:06,185                 even if it does not contain any `.py` files.
2026-05-16T06:37:06,186                 On the other hand, currently there is no concept of package data
2026-05-16T06:37:06,186                 directory, all directories are treated like packages.
2026-05-16T06:37:06,187           ********************************************************************************

2026-05-16T06:37:06,188   !!
2026-05-16T06:37:06,188     check.warn(importable)
2026-05-16T06:37:06,189   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.autism_microbiomevsVax' is absent from the `packages` configuration.
2026-05-16T06:37:06,190   !!

2026-05-16T06:37:06,191           ********************************************************************************
2026-05-16T06:37:06,191           ############################
2026-05-16T06:37:06,192           # Package would be ignored #
2026-05-16T06:37:06,193           ############################
2026-05-16T06:37:06,193           Python recognizes 'skimgpt.visualization.example_data.autism_microbiomevsVax' as an importable package[^1],
2026-05-16T06:37:06,194           but it is absent from setuptools' `packages` configuration.

2026-05-16T06:37:06,196           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-16T06:37:06,196           package, please make sure that 'skimgpt.visualization.example_data.autism_microbiomevsVax' is explicitly added
2026-05-16T06:37:06,196           to the `packages` configuration field.

2026-05-16T06:37:06,197           Alternatively, you can also rely on setuptools' discovery methods
2026-05-16T06:37:06,199           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-16T06:37:06,199           instead of `find_packages(...)`/`find:`).

2026-05-16T06:37:06,201           You can read more about "package discovery" on setuptools documentation page:

2026-05-16T06:37:06,202           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-16T06:37:06,203           If you don't want 'skimgpt.visualization.example_data.autism_microbiomevsVax' to be distributed and are
2026-05-16T06:37:06,204           already explicitly excluding 'skimgpt.visualization.example_data.autism_microbiomevsVax' via
2026-05-16T06:37:06,205           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-16T06:37:06,205           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-16T06:37:06,206           combination with a more fine grained `package-data` configuration.

2026-05-16T06:37:06,208           You can read more about "package data files" on setuptools documentation page:

2026-05-16T06:37:06,209           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-16T06:37:06,211           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-16T06:37:06,211                 even if it does not contain any `.py` files.
2026-05-16T06:37:06,212                 On the other hand, currently there is no concept of package data
2026-05-16T06:37:06,212                 directory, all directories are treated like packages.
2026-05-16T06:37:06,213           ********************************************************************************

2026-05-16T06:37:06,214   !!
2026-05-16T06:37:06,214     check.warn(importable)
2026-05-16T06:37:06,215   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.cervical_cancer' is absent from the `packages` configuration.
2026-05-16T06:37:06,215   !!

2026-05-16T06:37:06,217           ********************************************************************************
2026-05-16T06:37:06,217           ############################
2026-05-16T06:37:06,218           # Package would be ignored #
2026-05-16T06:37:06,219           ############################
2026-05-16T06:37:06,219           Python recognizes 'skimgpt.visualization.example_data.cervical_cancer' as an importable package[^1],
2026-05-16T06:37:06,220           but it is absent from setuptools' `packages` configuration.

2026-05-16T06:37:06,221           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-16T06:37:06,221           package, please make sure that 'skimgpt.visualization.example_data.cervical_cancer' is explicitly added
2026-05-16T06:37:06,222           to the `packages` configuration field.

2026-05-16T06:37:06,223           Alternatively, you can also rely on setuptools' discovery methods
2026-05-16T06:37:06,224           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-16T06:37:06,225           instead of `find_packages(...)`/`find:`).

2026-05-16T06:37:06,226           You can read more about "package discovery" on setuptools documentation page:

2026-05-16T06:37:06,227           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-16T06:37:06,228           If you don't want 'skimgpt.visualization.example_data.cervical_cancer' to be distributed and are
2026-05-16T06:37:06,229           already explicitly excluding 'skimgpt.visualization.example_data.cervical_cancer' via
2026-05-16T06:37:06,230           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-16T06:37:06,230           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-16T06:37:06,231           combination with a more fine grained `package-data` configuration.

2026-05-16T06:37:06,232           You can read more about "package data files" on setuptools documentation page:

2026-05-16T06:37:06,232           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-16T06:37:06,234           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-16T06:37:06,234                 even if it does not contain any `.py` files.
2026-05-16T06:37:06,234                 On the other hand, currently there is no concept of package data
2026-05-16T06:37:06,235                 directory, all directories are treated like packages.
2026-05-16T06:37:06,235           ********************************************************************************

2026-05-16T06:37:06,236   !!
2026-05-16T06:37:06,237     check.warn(importable)
2026-05-16T06:37:06,237   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.peptic_ulcer' is absent from the `packages` configuration.
2026-05-16T06:37:06,238   !!

2026-05-16T06:37:06,238           ********************************************************************************
2026-05-16T06:37:06,239           ############################
2026-05-16T06:37:06,239           # Package would be ignored #
2026-05-16T06:37:06,240           ############################
2026-05-16T06:37:06,241           Python recognizes 'skimgpt.visualization.example_data.peptic_ulcer' as an importable package[^1],
2026-05-16T06:37:06,241           but it is absent from setuptools' `packages` configuration.

2026-05-16T06:37:06,242           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-16T06:37:06,243           package, please make sure that 'skimgpt.visualization.example_data.peptic_ulcer' is explicitly added
2026-05-16T06:37:06,243           to the `packages` configuration field.

2026-05-16T06:37:06,245           Alternatively, you can also rely on setuptools' discovery methods
2026-05-16T06:37:06,245           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-16T06:37:06,246           instead of `find_packages(...)`/`find:`).

2026-05-16T06:37:06,247           You can read more about "package discovery" on setuptools documentation page:

2026-05-16T06:37:06,248           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-16T06:37:06,249           If you don't want 'skimgpt.visualization.example_data.peptic_ulcer' to be distributed and are
2026-05-16T06:37:06,250           already explicitly excluding 'skimgpt.visualization.example_data.peptic_ulcer' via
2026-05-16T06:37:06,250           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-16T06:37:06,251           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-16T06:37:06,251           combination with a more fine grained `package-data` configuration.

2026-05-16T06:37:06,252           You can read more about "package data files" on setuptools documentation page:

2026-05-16T06:37:06,253           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-16T06:37:06,255           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-16T06:37:06,256                 even if it does not contain any `.py` files.
2026-05-16T06:37:06,256                 On the other hand, currently there is no concept of package data
2026-05-16T06:37:06,257                 directory, all directories are treated like packages.
2026-05-16T06:37:06,257           ********************************************************************************

2026-05-16T06:37:06,258   !!
2026-05-16T06:37:06,259     check.warn(importable)
2026-05-16T06:37:06,259   /tmp/pip-build-env-68spcq7t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.scrapie' is absent from the `packages` configuration.
2026-05-16T06:37:06,260   !!

2026-05-16T06:37:06,260           ********************************************************************************
2026-05-16T06:37:06,261           ############################
2026-05-16T06:37:06,261           # Package would be ignored #
2026-05-16T06:37:06,261           ############################
2026-05-16T06:37:06,262           Python recognizes 'skimgpt.visualization.example_data.scrapie' as an importable package[^1],
2026-05-16T06:37:06,263           but it is absent from setuptools' `packages` configuration.

2026-05-16T06:37:06,263           This leads to an ambiguous overall configuration. If you want to distribute this
2026-05-16T06:37:06,264           package, please make sure that 'skimgpt.visualization.example_data.scrapie' is explicitly added
2026-05-16T06:37:06,264           to the `packages` configuration field.

2026-05-16T06:37:06,265           Alternatively, you can also rely on setuptools' discovery methods
2026-05-16T06:37:06,265           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-05-16T06:37:06,266           instead of `find_packages(...)`/`find:`).

2026-05-16T06:37:06,267           You can read more about "package discovery" on setuptools documentation page:

2026-05-16T06:37:06,268           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-05-16T06:37:06,269           If you don't want 'skimgpt.visualization.example_data.scrapie' to be distributed and are
2026-05-16T06:37:06,269           already explicitly excluding 'skimgpt.visualization.example_data.scrapie' via
2026-05-16T06:37:06,270           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-05-16T06:37:06,270           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-05-16T06:37:06,271           combination with a more fine grained `package-data` configuration.

2026-05-16T06:37:06,272           You can read more about "package data files" on setuptools documentation page:

2026-05-16T06:37:06,273           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-05-16T06:37:06,275           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-05-16T06:37:06,276                 even if it does not contain any `.py` files.
2026-05-16T06:37:06,276                 On the other hand, currently there is no concept of package data
2026-05-16T06:37:06,277                 directory, all directories are treated like packages.
2026-05-16T06:37:06,277           ********************************************************************************

2026-05-16T06:37:06,278   !!
2026-05-16T06:37:06,279     check.warn(importable)
2026-05-16T06:37:06,279   copying skimgpt/run.sh -> build/lib/skimgpt
2026-05-16T06:37:06,280   copying skimgpt/visualization/bayesian_ci_commandline.txt -> build/lib/skimgpt/visualization
2026-05-16T06:37:06,280   copying skimgpt/visualization/hyp_stats_commandline.txt -> build/lib/skimgpt/visualization
2026-05-16T06:37:06,281   copying skimgpt/visualization/plot_hyp_stats_commandline.txt -> build/lib/skimgpt/visualization
2026-05-16T06:37:06,281   copying skimgpt/visualization/plot_separate_runs_commandline.txt -> build/lib/skimgpt/visualization
2026-05-16T06:37:06,282   creating build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-16T06:37:06,282   copying skimgpt/visualization/example_data/CVD_HormonevsStatins/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-16T06:37:06,283   copying skimgpt/visualization/example_data/CVD_HormonevsStatins/km_kept.txt -> build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-16T06:37:06,283   creating build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-16T06:37:06,284   copying skimgpt/visualization/example_data/autism_GPvsVaccine/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-16T06:37:06,285   copying skimgpt/visualization/example_data/autism_GPvsVaccine/km_kept.txt -> build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-16T06:37:06,286   creating build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-16T06:37:06,286   copying skimgpt/visualization/example_data/autism_microbiomeVsGP/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-16T06:37:06,286   copying skimgpt/visualization/example_data/autism_microbiomeVsGP/km_kept.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-16T06:37:06,287   creating build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-16T06:37:06,287   copying skimgpt/visualization/example_data/autism_microbiomevsVax/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-16T06:37:06,287   copying skimgpt/visualization/example_data/autism_microbiomevsVax/km_kept.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-16T06:37:06,288   creating build/lib/skimgpt/visualization/example_data/cervical_cancer
2026-05-16T06:37:06,288   copying skimgpt/visualization/example_data/cervical_cancer/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/cervical_cancer
2026-05-16T06:37:06,289   copying skimgpt/visualization/example_data/cervical_cancer/km_kept.txt -> build/lib/skimgpt/visualization/example_data/cervical_cancer
2026-05-16T06:37:06,289   creating build/lib/skimgpt/visualization/example_data/peptic_ulcer
2026-05-16T06:37:06,290   copying skimgpt/visualization/example_data/peptic_ulcer/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/peptic_ulcer
2026-05-16T06:37:06,290   copying skimgpt/visualization/example_data/peptic_ulcer/km_kept.txt -> build/lib/skimgpt/visualization/example_data/peptic_ulcer
2026-05-16T06:37:06,291   creating build/lib/skimgpt/visualization/example_data/scrapie
2026-05-16T06:37:06,292   copying skimgpt/visualization/example_data/scrapie/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/scrapie
2026-05-16T06:37:06,292   copying skimgpt/visualization/example_data/scrapie/km_kept.txt -> build/lib/skimgpt/visualization/example_data/scrapie
2026-05-16T06:37:06,293   installing to build/bdist.linux-armv7l/wheel
2026-05-16T06:37:06,293   running install
2026-05-16T06:37:06,294   running install_lib
2026-05-16T06:37:06,294   creating build/bdist.linux-armv7l/wheel
2026-05-16T06:37:06,295   creating build/bdist.linux-armv7l/wheel/skimgpt
2026-05-16T06:37:06,295   copying build/lib/skimgpt/main.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,296   copying build/lib/skimgpt/prompt_library.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,296   copying build/lib/skimgpt/retry.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,297   copying build/lib/skimgpt/pubmed_fetcher.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,297   copying build/lib/skimgpt/relevance_helper.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,298   copying build/lib/skimgpt/relevance_triton.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,298   copying build/lib/skimgpt/relevance_chtc.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,300   copying build/lib/skimgpt/utils.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,303   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization
2026-05-16T06:37:06,304   copying build/lib/skimgpt/visualization/bayesian_ci_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-16T06:37:06,306   copying build/lib/skimgpt/visualization/plot_separate_runs_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-16T06:37:06,308   copying build/lib/skimgpt/visualization/bayesian_ci.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-16T06:37:06,310   copying build/lib/skimgpt/visualization/plot_hyp_stats_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-16T06:37:06,312   copying build/lib/skimgpt/visualization/hyp_stats.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-16T06:37:06,315   copying build/lib/skimgpt/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-16T06:37:06,316   copying build/lib/skimgpt/visualization/plot_hyp_stats.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-16T06:37:06,318   copying build/lib/skimgpt/visualization/plot_separate_runs.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-16T06:37:06,321   copying build/lib/skimgpt/visualization/hyp_stats_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization
2026-05-16T06:37:06,323   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data
2026-05-16T06:37:06,325   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/peptic_ulcer
2026-05-16T06:37:06,326   copying build/lib/skimgpt/visualization/example_data/peptic_ulcer/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/peptic_ulcer
2026-05-16T06:37:06,329   copying build/lib/skimgpt/visualization/example_data/peptic_ulcer/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/peptic_ulcer
2026-05-16T06:37:06,332   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/scrapie
2026-05-16T06:37:06,333   copying build/lib/skimgpt/visualization/example_data/scrapie/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/scrapie
2026-05-16T06:37:06,336   copying build/lib/skimgpt/visualization/example_data/scrapie/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/scrapie
2026-05-16T06:37:06,340   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-16T06:37:06,341   copying build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-16T06:37:06,343   copying build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomeVsGP
2026-05-16T06:37:06,346   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-16T06:37:06,347   copying build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-16T06:37:06,350   copying build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_GPvsVaccine
2026-05-16T06:37:06,353   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-16T06:37:06,354   copying build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-16T06:37:06,357   copying build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/CVD_HormonevsStatins
2026-05-16T06:37:06,360   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-16T06:37:06,361   copying build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-16T06:37:06,364   copying build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomevsVax
2026-05-16T06:37:06,367   creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/cervical_cancer
2026-05-16T06:37:06,368   copying build/lib/skimgpt/visualization/example_data/cervical_cancer/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/cervical_cancer
2026-05-16T06:37:06,371   copying build/lib/skimgpt/visualization/example_data/cervical_cancer/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/cervical_cancer
2026-05-16T06:37:06,374   copying build/lib/skimgpt/run.sh -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,376   copying build/lib/skimgpt/classifier.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,379   copying build/lib/skimgpt/scoring_guidelines.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,381   copying build/lib/skimgpt/eval_JSON_results.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,383   copying build/lib/skimgpt/triton_client.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,386   copying build/lib/skimgpt/htcondor_helper.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,388   copying build/lib/skimgpt/cost_estimator.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,390   copying build/lib/skimgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,392   copying build/lib/skimgpt/skim_and_km_api.py -> build/bdist.linux-armv7l/wheel/./skimgpt
2026-05-16T06:37:06,394   running install_egg_info
2026-05-16T06:37:06,400   Copying skimgpt.egg-info to build/bdist.linux-armv7l/wheel/./skimgpt-2.0.4-py3.11.egg-info
2026-05-16T06:37:06,411   running install_scripts
2026-05-16T06:37:06,419   creating build/bdist.linux-armv7l/wheel/skimgpt-2.0.4.dist-info/WHEEL
2026-05-16T06:37:06,422   creating '/tmp/pip-wheel-r7uce8xw/.tmp-oczd271e/skimgpt-2.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-05-16T06:37:06,424   adding 'skimgpt/__init__.py'
2026-05-16T06:37:06,428   adding 'skimgpt/classifier.py'
2026-05-16T06:37:06,430   adding 'skimgpt/cost_estimator.py'
2026-05-16T06:37:06,432   adding 'skimgpt/eval_JSON_results.py'
2026-05-16T06:37:06,434   adding 'skimgpt/htcondor_helper.py'
2026-05-16T06:37:06,436   adding 'skimgpt/main.py'
2026-05-16T06:37:06,441   adding 'skimgpt/prompt_library.py'
2026-05-16T06:37:06,444   adding 'skimgpt/pubmed_fetcher.py'
2026-05-16T06:37:06,445   adding 'skimgpt/relevance_chtc.py'
2026-05-16T06:37:06,449   adding 'skimgpt/relevance_helper.py'
2026-05-16T06:37:06,451   adding 'skimgpt/relevance_triton.py'
2026-05-16T06:37:06,452   adding 'skimgpt/retry.py'
2026-05-16T06:37:06,454   adding 'skimgpt/run.sh'
2026-05-16T06:37:06,456   adding 'skimgpt/scoring_guidelines.py'
2026-05-16T06:37:06,458   adding 'skimgpt/skim_and_km_api.py'
2026-05-16T06:37:06,460   adding 'skimgpt/triton_client.py'
2026-05-16T06:37:06,463   adding 'skimgpt/utils.py'
2026-05-16T06:37:06,465   adding 'skimgpt/visualization/__init__.py'
2026-05-16T06:37:06,467   adding 'skimgpt/visualization/bayesian_ci.py'
2026-05-16T06:37:06,469   adding 'skimgpt/visualization/bayesian_ci_commandline.txt'
2026-05-16T06:37:06,472   adding 'skimgpt/visualization/hyp_stats.py'
2026-05-16T06:37:06,474   adding 'skimgpt/visualization/hyp_stats_commandline.txt'
2026-05-16T06:37:06,476   adding 'skimgpt/visualization/plot_hyp_stats.py'
2026-05-16T06:37:06,478   adding 'skimgpt/visualization/plot_hyp_stats_commandline.txt'
2026-05-16T06:37:06,479   adding 'skimgpt/visualization/plot_separate_runs.py'
2026-05-16T06:37:06,480   adding 'skimgpt/visualization/plot_separate_runs_commandline.txt'
2026-05-16T06:37:06,483   adding 'skimgpt/visualization/example_data/CVD_HormonevsStatins/km_hyp_stats.txt'
2026-05-16T06:37:06,487   adding 'skimgpt/visualization/example_data/CVD_HormonevsStatins/km_kept.txt'
2026-05-16T06:37:06,489   adding 'skimgpt/visualization/example_data/autism_GPvsVaccine/km_hyp_stats.txt'
2026-05-16T06:37:06,493   adding 'skimgpt/visualization/example_data/autism_GPvsVaccine/km_kept.txt'
2026-05-16T06:37:06,496   adding 'skimgpt/visualization/example_data/autism_microbiomeVsGP/km_hyp_stats.txt'
2026-05-16T06:37:06,499   adding 'skimgpt/visualization/example_data/autism_microbiomeVsGP/km_kept.txt'
2026-05-16T06:37:06,501   adding 'skimgpt/visualization/example_data/autism_microbiomevsVax/km_hyp_stats.txt'
2026-05-16T06:37:06,504   adding 'skimgpt/visualization/example_data/autism_microbiomevsVax/km_kept.txt'
2026-05-16T06:37:06,508   adding 'skimgpt/visualization/example_data/cervical_cancer/km_hyp_stats.txt'
2026-05-16T06:37:06,515   adding 'skimgpt/visualization/example_data/cervical_cancer/km_kept.txt'
2026-05-16T06:37:06,518   adding 'skimgpt/visualization/example_data/peptic_ulcer/km_hyp_stats.txt'
2026-05-16T06:37:06,521   adding 'skimgpt/visualization/example_data/peptic_ulcer/km_kept.txt'
2026-05-16T06:37:06,525   adding 'skimgpt/visualization/example_data/scrapie/km_hyp_stats.txt'
2026-05-16T06:37:06,529   adding 'skimgpt/visualization/example_data/scrapie/km_kept.txt'
2026-05-16T06:37:06,532   adding 'skimgpt-2.0.4.dist-info/METADATA'
2026-05-16T06:37:06,533   adding 'skimgpt-2.0.4.dist-info/WHEEL'
2026-05-16T06:37:06,534   adding 'skimgpt-2.0.4.dist-info/entry_points.txt'
2026-05-16T06:37:06,535   adding 'skimgpt-2.0.4.dist-info/top_level.txt'
2026-05-16T06:37:06,536   adding 'skimgpt-2.0.4.dist-info/RECORD'
2026-05-16T06:37:06,539   removing build/bdist.linux-armv7l/wheel
2026-05-16T06:37:06,659   Building wheel for skimgpt (pyproject.toml): finished with status 'done'
2026-05-16T06:37:06,667   Created wheel for skimgpt: filename=skimgpt-2.0.4-py3-none-any.whl size=178902 sha256=49ada3639ddd4b9d224645d564d917fbc89f8c7c86d84fcf6772ee27a68c6df6
2026-05-16T06:37:06,669   Stored in directory: /tmp/pip-ephem-wheel-cache-own1mccl/wheels/2a/52/c8/bdf9ccf6e84e02665ebac2d894e11869c5b289d83938c554d3
2026-05-16T06:37:06,681 Successfully built skimgpt
2026-05-16T06:37:06,689 Removed build tracker: '/tmp/pip-build-tracker-byzpswej'