2026-05-19T08:14:18,974 Created temporary directory: /tmp/pip-ephem-wheel-cache-d9_2pn5i 2026-05-19T08:14:18,976 Created temporary directory: /tmp/pip-build-tracker-iaf8x7vo 2026-05-19T08:14:18,977 Initialized build tracking at /tmp/pip-build-tracker-iaf8x7vo 2026-05-19T08:14:18,977 Created build tracker: /tmp/pip-build-tracker-iaf8x7vo 2026-05-19T08:14:18,978 Entered build tracker: /tmp/pip-build-tracker-iaf8x7vo 2026-05-19T08:14:18,978 Created temporary directory: /tmp/pip-wheel-z7n307ue 2026-05-19T08:14:18,981 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-19T08:14:18,984 Created temporary directory: /tmp/pip-ephem-wheel-cache-usp2s7uq 2026-05-19T08:14:19,006 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-19T08:14:19,009 2 location(s) to search for versions of omicverse: 2026-05-19T08:14:19,009 * https://pypi.org/simple/omicverse/ 2026-05-19T08:14:19,009 * https://www.piwheels.org/simple/omicverse/ 2026-05-19T08:14:19,010 Fetching project page and analyzing links: https://pypi.org/simple/omicverse/ 2026-05-19T08:14:19,011 Getting page https://pypi.org/simple/omicverse/ 2026-05-19T08:14:19,012 Found index url https://pypi.org/simple 2026-05-19T08:14:19,243 Fetched page https://pypi.org/simple/omicverse/ as application/vnd.pypi.simple.v1+json 2026-05-19T08:14:19,268 Skipping link: No binaries permitted for omicverse: 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.2-py3-none-any.whl#sha256=46204165e625355c881fae9a0289295de89da868f61777f89430b974c5e49502 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,610 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.1-py3-none-any.whl#sha256=36486f7a179adc784d1418fa7298b5536b1d4817569b749cd5153bbb2c08c04a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,610 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.0-py3-none-any.whl#sha256=ccb9351c403b3eb871bb8a319da880f412d758800964b1789954b310b0fc761f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,611 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.17-py3-none-any.whl#sha256=61e0339c8e30df3c404a1ce2e1bd1ac4649c486655f81ab81a2bc5db81fb92de (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,611 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.16-py3-none-any.whl#sha256=f85fabdac2f55e62bf381e051890394fec36d2b2fc8f4260220e7b19469b3f4a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,612 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,613 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,613 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,614 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.12-py3-none-any.whl#sha256=f6d137f17dcd051ada45eb7057a8c10bf4f149041cf3f68fe724a6a01cdb444b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,614 Skipping link: No binaries permitted for omicverse: 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,618 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,618 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,619 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,620 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-05-19T08:14:19,620 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-05-19T08:14:19,621 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-05-19T08:14:19,647 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-05-19T08:14:19,666 Collecting omicverse==2.2.0 2026-05-19T08:14:19,668 Created temporary directory: /tmp/pip-unpack-iuyt6isd 2026-05-19T08:14:19,899 Downloading omicverse-2.2.0.tar.gz (12.5 MB) 2026-05-19T08:14:26,414 Added omicverse==2.2.0 from https://files.pythonhosted.org/packages/62/65/631bb2d140ab896e978fa3653e794151e9d5bc50082f84d8ef85e3c1ebc0/omicverse-2.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-iaf8x7vo' 2026-05-19T08:14:26,422 Created temporary directory: /tmp/pip-build-env-skq2e_nq 2026-05-19T08:14:26,427 Installing build dependencies: started 2026-05-19T08:14:26,428 Running command pip subprocess to install build dependencies 2026-05-19T08:14:27,561 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-19T08:14:27,978 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-19T08:14:28,003 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-19T08:14:29,772 Collecting setuptools>=61 2026-05-19T08:14:29,773 Obtaining dependency information for setuptools>=61 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-19T08:14:29,788 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-19T08:14:30,024 Collecting wheel 2026-05-19T08:14:30,025 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-05-19T08:14:30,039 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-05-19T08:14:32,066 Collecting Cython 2026-05-19T08:14:32,067 Obtaining dependency information for Cython from https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl.metadata 2026-05-19T08:14:32,083 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl.metadata (7.5 kB) 2026-05-19T08:14:32,269 Collecting packaging>=24.0 2026-05-19T08:14:32,270 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-19T08:14:32,284 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-19T08:14:32,541 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-19T08:14:33,322 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-05-19T08:14:33,526 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-19T08:14:33,615 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-19T08:14:33,656 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-19T08:14:34,481 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-05-19T08:14:34,776 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-19T08:14:34,868 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-19T08:14:37,594 Installing collected packages: setuptools, packaging, Cython, wheel 2026-05-19T08:14:44,684 Creating /tmp/pip-build-env-skq2e_nq/overlay/local/bin 2026-05-19T08:14:44,686 changing mode of /tmp/pip-build-env-skq2e_nq/overlay/local/bin/cygdb to 755 2026-05-19T08:14:44,688 changing mode of /tmp/pip-build-env-skq2e_nq/overlay/local/bin/cython to 755 2026-05-19T08:14:44,690 changing mode of /tmp/pip-build-env-skq2e_nq/overlay/local/bin/cythonize to 755 2026-05-19T08:14:44,830 changing mode of /tmp/pip-build-env-skq2e_nq/overlay/local/bin/wheel to 755 2026-05-19T08:14:44,859 Successfully installed Cython-3.2.4 packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-05-19T08:14:45,248 Installing build dependencies: finished with status 'done' 2026-05-19T08:14:45,254 Getting requirements to build wheel: started 2026-05-19T08:14:45,255 Running command Getting requirements to build wheel 2026-05-19T08:14:46,017 /tmp/pip-build-env-skq2e_nq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-19T08:14:46,017 !! 2026-05-19T08:14:46,018 ******************************************************************************** 2026-05-19T08:14:46,019 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-19T08:14:46,021 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-19T08:14:46,021 or your builds will no longer be supported. 2026-05-19T08:14:46,022 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-19T08:14:46,022 ******************************************************************************** 2026-05-19T08:14:46,023 !! 2026-05-19T08:14:46,024 corresp(dist, value, root_dir) 2026-05-19T08:14:46,306 running egg_info 2026-05-19T08:14:46,313 writing omicverse.egg-info/PKG-INFO 2026-05-19T08:14:46,333 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-05-19T08:14:46,334 writing entry points to omicverse.egg-info/entry_points.txt 2026-05-19T08:14:46,345 writing requirements to omicverse.egg-info/requires.txt 2026-05-19T08:14:46,346 writing top-level names to omicverse.egg-info/top_level.txt 2026-05-19T08:14:46,617 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-05-19T08:14:46,687 reading manifest template 'MANIFEST.in' 2026-05-19T08:14:47,709 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-05-19T08:14:49,279 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-05-19T08:14:49,859 warning: no files found matching '*.yml' under directory 'omicverse' 2026-05-19T08:14:54,610 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-05-19T08:14:55,113 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-05-19T08:14:55,634 warning: no files found matching '*.svg' under directory 'omicverse' 2026-05-19T08:14:56,116 warning: no files found matching '*.ico' under directory 'omicverse' 2026-05-19T08:14:56,592 warning: no files found matching '*.db' under directory 'omicverse' 2026-05-19T08:14:57,081 warning: no files found matching '*.npz' under directory 'omicverse' 2026-05-19T08:14:57,661 warning: no files found matching '*.gz' under directory 'omicverse' 2026-05-19T08:14:57,665 no previously-included directories found matching '.git' 2026-05-19T08:14:57,668 no previously-included directories found matching '.github' 2026-05-19T08:14:57,671 no previously-included directories found matching '.claude' 2026-05-19T08:14:57,674 no previously-included directories found matching '.pytest_cache' 2026-05-19T08:14:57,677 no previously-included directories found matching '.ruff_cache' 2026-05-19T08:14:57,681 no previously-included directories found matching '.vscode' 2026-05-19T08:14:57,684 no previously-included directories found matching 'docs' 2026-05-19T08:14:57,687 no previously-included directories found matching 'tests' 2026-05-19T08:14:57,690 no previously-included directories found matching 'OvIntelligence' 2026-05-19T08:14:57,694 no previously-included directories found matching 'READMEM' 2026-05-19T08:14:57,697 no previously-included directories found matching 'omicverse_guide' 2026-05-19T08:14:57,701 no previously-included directories found matching 'omicverse_web' 2026-05-19T08:14:57,704 no previously-included directories found matching 'tmp' 2026-05-19T08:14:57,707 no previously-included directories found matching 'tmp_omicverse' 2026-05-19T08:14:57,710 no previously-included directories found matching 'Skill_Seekers' 2026-05-19T08:14:57,717 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-05-19T08:14:57,725 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-05-19T08:14:57,733 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-05-19T08:14:57,733 adding license file 'LICENSE' 2026-05-19T08:14:57,815 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-05-19T08:14:57,935 Getting requirements to build wheel: finished with status 'done' 2026-05-19T08:14:57,939 Created temporary directory: /tmp/pip-modern-metadata-hc2oyx7k 2026-05-19T08:14:57,942 Preparing metadata (pyproject.toml): started 2026-05-19T08:14:57,943 Running command Preparing metadata (pyproject.toml) 2026-05-19T08:14:58,610 /tmp/pip-build-env-skq2e_nq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-19T08:14:58,610 !! 2026-05-19T08:14:58,611 ******************************************************************************** 2026-05-19T08:14:58,612 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-19T08:14:58,613 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-19T08:14:58,613 or your builds will no longer be supported. 2026-05-19T08:14:58,614 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-19T08:14:58,615 ******************************************************************************** 2026-05-19T08:14:58,616 !! 2026-05-19T08:14:58,616 corresp(dist, value, root_dir) 2026-05-19T08:14:58,900 running dist_info 2026-05-19T08:14:58,911 creating /tmp/pip-modern-metadata-hc2oyx7k/omicverse.egg-info 2026-05-19T08:14:58,912 writing /tmp/pip-modern-metadata-hc2oyx7k/omicverse.egg-info/PKG-INFO 2026-05-19T08:14:58,932 writing dependency_links to /tmp/pip-modern-metadata-hc2oyx7k/omicverse.egg-info/dependency_links.txt 2026-05-19T08:14:58,934 writing entry points to /tmp/pip-modern-metadata-hc2oyx7k/omicverse.egg-info/entry_points.txt 2026-05-19T08:14:58,944 writing requirements to /tmp/pip-modern-metadata-hc2oyx7k/omicverse.egg-info/requires.txt 2026-05-19T08:14:58,945 writing top-level names to /tmp/pip-modern-metadata-hc2oyx7k/omicverse.egg-info/top_level.txt 2026-05-19T08:14:58,947 writing manifest file '/tmp/pip-modern-metadata-hc2oyx7k/omicverse.egg-info/SOURCES.txt' 2026-05-19T08:14:59,172 reading manifest file '/tmp/pip-modern-metadata-hc2oyx7k/omicverse.egg-info/SOURCES.txt' 2026-05-19T08:14:59,174 reading manifest template 'MANIFEST.in' 2026-05-19T08:15:00,289 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-05-19T08:15:01,816 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-05-19T08:15:02,465 warning: no files found matching '*.yml' under directory 'omicverse' 2026-05-19T08:15:06,984 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-05-19T08:15:07,494 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-05-19T08:15:07,972 warning: no files found matching '*.svg' under directory 'omicverse' 2026-05-19T08:15:08,447 warning: no files found matching '*.ico' under directory 'omicverse' 2026-05-19T08:15:08,940 warning: no files found matching '*.db' under directory 'omicverse' 2026-05-19T08:15:09,430 warning: no files found matching '*.npz' under directory 'omicverse' 2026-05-19T08:15:09,908 warning: no files found matching '*.gz' under directory 'omicverse' 2026-05-19T08:15:09,911 no previously-included directories found matching '.git' 2026-05-19T08:15:09,914 no previously-included directories found matching '.github' 2026-05-19T08:15:09,917 no previously-included directories found matching '.claude' 2026-05-19T08:15:09,921 no previously-included directories found matching '.pytest_cache' 2026-05-19T08:15:09,924 no previously-included directories found matching '.ruff_cache' 2026-05-19T08:15:09,927 no previously-included directories found matching '.vscode' 2026-05-19T08:15:09,930 no previously-included directories found matching 'docs' 2026-05-19T08:15:09,933 no previously-included directories found matching 'tests' 2026-05-19T08:15:09,936 no previously-included directories found matching 'OvIntelligence' 2026-05-19T08:15:09,939 no previously-included directories found matching 'READMEM' 2026-05-19T08:15:09,942 no previously-included directories found matching 'omicverse_guide' 2026-05-19T08:15:09,946 no previously-included directories found matching 'omicverse_web' 2026-05-19T08:15:09,949 no previously-included directories found matching 'tmp' 2026-05-19T08:15:09,952 no previously-included directories found matching 'tmp_omicverse' 2026-05-19T08:15:09,955 no previously-included directories found matching 'Skill_Seekers' 2026-05-19T08:15:09,959 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-05-19T08:15:09,965 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-05-19T08:15:09,969 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-05-19T08:15:09,970 adding license file 'LICENSE' 2026-05-19T08:15:10,032 writing manifest file '/tmp/pip-modern-metadata-hc2oyx7k/omicverse.egg-info/SOURCES.txt' 2026-05-19T08:15:10,034 creating '/tmp/pip-modern-metadata-hc2oyx7k/omicverse-2.2.0.dist-info' 2026-05-19T08:15:10,180 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-19T08:15:10,195 Source in /tmp/pip-wheel-z7n307ue/omicverse_aea7647dcfe44e2faeae23b87cec9198 has version 2.2.0, which satisfies requirement omicverse==2.2.0 from https://files.pythonhosted.org/packages/62/65/631bb2d140ab896e978fa3653e794151e9d5bc50082f84d8ef85e3c1ebc0/omicverse-2.2.0.tar.gz 2026-05-19T08:15:10,196 Removed omicverse==2.2.0 from https://files.pythonhosted.org/packages/62/65/631bb2d140ab896e978fa3653e794151e9d5bc50082f84d8ef85e3c1ebc0/omicverse-2.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-iaf8x7vo' 2026-05-19T08:15:10,221 Created temporary directory: /tmp/pip-unpack-ky9o6w23 2026-05-19T08:15:10,222 Building wheels for collected packages: omicverse 2026-05-19T08:15:10,226 Created temporary directory: /tmp/pip-wheel-nb18tn7d 2026-05-19T08:15:10,227 Destination directory: /tmp/pip-wheel-nb18tn7d 2026-05-19T08:15:10,229 Building wheel for omicverse (pyproject.toml): started 2026-05-19T08:15:10,230 Running command Building wheel for omicverse (pyproject.toml) 2026-05-19T08:15:10,887 /tmp/pip-build-env-skq2e_nq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-05-19T08:15:10,887 !! 2026-05-19T08:15:10,888 ******************************************************************************** 2026-05-19T08:15:10,889 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-05-19T08:15:10,890 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-05-19T08:15:10,891 or your builds will no longer be supported. 2026-05-19T08:15:10,892 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-05-19T08:15:10,892 ******************************************************************************** 2026-05-19T08:15:10,893 !! 2026-05-19T08:15:10,894 corresp(dist, value, root_dir) 2026-05-19T08:15:11,156 running bdist_wheel 2026-05-19T08:15:11,176 running build 2026-05-19T08:15:11,176 running build_py 2026-05-19T08:15:11,183 creating build/lib/omicverse 2026-05-19T08:15:11,185 copying omicverse/_optional.py -> build/lib/omicverse 2026-05-19T08:15:11,187 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-05-19T08:15:11,189 copying omicverse/_oom_compat.py -> build/lib/omicverse 2026-05-19T08:15:11,191 copying omicverse/_settings.py -> build/lib/omicverse 2026-05-19T08:15:11,194 copying omicverse/cli.py -> build/lib/omicverse 2026-05-19T08:15:11,196 copying omicverse/__init__.py -> build/lib/omicverse 2026-05-19T08:15:11,199 copying omicverse/_monitor.py -> build/lib/omicverse 2026-05-19T08:15:11,201 copying omicverse/_registry.py -> build/lib/omicverse 2026-05-19T08:15:11,205 copying omicverse/claw.py -> build/lib/omicverse 2026-05-19T08:15:11,209 creating build/lib/omicverse/utils 2026-05-19T08:15:11,210 copying omicverse/utils/_memory.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,211 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,213 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,215 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,217 copying omicverse/utils/agent_backend_dashscope.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,219 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,221 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,224 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,226 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,229 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,231 copying omicverse/utils/_sample_metadata_alignment.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,234 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,235 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,238 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,240 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,242 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,245 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,247 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,249 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,252 copying omicverse/utils/agent_backend_gemini.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,254 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,257 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,259 copying omicverse/utils/registry.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,261 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,263 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,265 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,267 copying omicverse/utils/agent_backend_streaming.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,269 copying omicverse/utils/_gene_id_conversion.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,272 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,274 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,277 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,280 copying omicverse/utils/agent_backend_openai.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,283 copying omicverse/utils/_metabolights.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,286 copying omicverse/utils/_ovagent_lookup.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,288 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,291 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,294 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,296 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,298 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,301 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,303 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,305 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,307 copying omicverse/utils/_ovagent_paths.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,309 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,311 copying omicverse/utils/agent_backend_anthropic.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,313 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,316 copying omicverse/utils/agent_backend_common.py -> build/lib/omicverse/utils 2026-05-19T08:15:11,319 creating build/lib/omicverse/space 2026-05-19T08:15:11,320 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-05-19T08:15:11,322 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-05-19T08:15:11,324 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-05-19T08:15:11,327 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-05-19T08:15:11,329 copying omicverse/space/_tissue_zones.py -> build/lib/omicverse/space 2026-05-19T08:15:11,331 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-05-19T08:15:11,333 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-05-19T08:15:11,336 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-05-19T08:15:11,338 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-05-19T08:15:11,340 copying omicverse/space/_cellcharter.py -> build/lib/omicverse/space 2026-05-19T08:15:11,342 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-05-19T08:15:11,345 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-05-19T08:15:11,347 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-05-19T08:15:11,350 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-05-19T08:15:11,352 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-05-19T08:15:11,354 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-05-19T08:15:11,358 creating build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:11,359 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:11,361 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:11,363 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:11,365 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:11,367 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:11,370 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:11,371 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:11,373 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:11,376 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:11,378 creating build/lib/omicverse/alignment 2026-05-19T08:15:11,379 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,382 copying omicverse/alignment/phylogeny.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,384 copying omicverse/alignment/_db.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,386 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,388 copying omicverse/alignment/dada2.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,391 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,393 copying omicverse/alignment/fasttree.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,395 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,398 copying omicverse/alignment/vsearch.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,400 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,403 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,405 copying omicverse/alignment/cutadapt.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,407 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,409 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,411 copying omicverse/alignment/mafft.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,413 copying omicverse/alignment/amplicon_16s.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,416 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-05-19T08:15:11,419 creating build/lib/omicverse/agent 2026-05-19T08:15:11,420 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-05-19T08:15:11,423 creating build/lib/omicverse/jarvis 2026-05-19T08:15:11,424 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,426 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,428 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,430 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,432 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,434 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,436 copying omicverse/jarvis/gemini_cli_oauth.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,439 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,442 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,444 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,447 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,450 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,453 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,454 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-05-19T08:15:11,458 creating build/lib/omicverse/pp 2026-05-19T08:15:11,459 copying omicverse/pp/_doubletfinder.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,461 copying omicverse/pp/_champ.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,464 copying omicverse/pp/_scdblfinder.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,466 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,469 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,472 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,474 copying omicverse/pp/_tsne_cpu.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,476 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,478 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,481 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,485 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,487 copying omicverse/pp/_leiden_gpu.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,490 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,492 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,495 copying omicverse/pp/_gpu_cache.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,497 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,499 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,501 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,503 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,506 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,509 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,511 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,515 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,517 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,519 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,521 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,524 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-05-19T08:15:11,527 creating build/lib/omicverse/bulk 2026-05-19T08:15:11,528 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,530 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,533 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,535 copying omicverse/bulk/_wgcna.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,537 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,539 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,542 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,545 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,547 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,550 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,562 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,565 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-05-19T08:15:11,568 creating build/lib/omicverse/report 2026-05-19T08:15:11,569 copying omicverse/report/_scanner.py -> build/lib/omicverse/report 2026-05-19T08:15:11,572 copying omicverse/report/_plots.py -> build/lib/omicverse/report 2026-05-19T08:15:11,574 copying omicverse/report/_provenance.py -> build/lib/omicverse/report 2026-05-19T08:15:11,577 copying omicverse/report/_html.py -> build/lib/omicverse/report 2026-05-19T08:15:11,580 copying omicverse/report/__init__.py -> build/lib/omicverse/report 2026-05-19T08:15:11,582 creating build/lib/omicverse/datasets 2026-05-19T08:15:11,584 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-05-19T08:15:11,586 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-05-19T08:15:11,590 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-05-19T08:15:11,594 creating build/lib/omicverse/pl 2026-05-19T08:15:11,595 copying omicverse/pl/_nanostring.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,599 copying omicverse/pl/_scatterplot_backend.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,604 copying omicverse/pl/_plot1cell.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,608 copying omicverse/pl/_trajectory.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,611 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,616 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,618 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,622 copying omicverse/pl/_venn_backend.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,624 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,626 copying omicverse/pl/_dynamic_trends.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,629 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,632 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,637 copying omicverse/pl/_plot_backend.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,640 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,642 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,645 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,649 copying omicverse/pl/_branch_streamplot.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,652 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,655 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,659 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,662 copying omicverse/pl/_scanpy_compat.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,665 copying omicverse/pl/_cnv.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,668 copying omicverse/pl/_ccc.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,678 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,683 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,686 copying omicverse/pl/_heatmap_marsilea.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,691 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,695 copying omicverse/pl/_report.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,698 copying omicverse/pl/_perturbation.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,701 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,704 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,706 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,712 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,715 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-05-19T08:15:11,720 creating build/lib/omicverse/bulk2single 2026-05-19T08:15:11,721 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-05-19T08:15:11,724 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-05-19T08:15:11,726 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-05-19T08:15:11,729 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-05-19T08:15:11,733 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-05-19T08:15:11,735 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-05-19T08:15:11,738 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-05-19T08:15:11,741 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-05-19T08:15:11,744 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-05-19T08:15:11,747 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-05-19T08:15:11,750 creating build/lib/omicverse/mcp 2026-05-19T08:15:11,752 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,754 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,757 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,760 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,763 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,765 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,768 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,771 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,774 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,777 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,780 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,784 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,786 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-05-19T08:15:11,790 creating build/lib/omicverse/single 2026-05-19T08:15:11,792 copying omicverse/single/_liana.py -> build/lib/omicverse/single 2026-05-19T08:15:11,795 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-05-19T08:15:11,798 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-05-19T08:15:11,800 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-05-19T08:15:11,803 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-05-19T08:15:11,808 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-05-19T08:15:11,810 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-05-19T08:15:11,813 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-05-19T08:15:11,816 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-05-19T08:15:11,820 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-05-19T08:15:11,823 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-05-19T08:15:11,826 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-05-19T08:15:11,829 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-05-19T08:15:11,833 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-05-19T08:15:11,838 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-05-19T08:15:11,842 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-05-19T08:15:11,846 copying omicverse/single/_comm.py -> build/lib/omicverse/single 2026-05-19T08:15:11,848 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-05-19T08:15:11,852 copying omicverse/single/_monocle.py -> build/lib/omicverse/single 2026-05-19T08:15:11,856 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-05-19T08:15:11,860 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-05-19T08:15:11,862 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-05-19T08:15:11,866 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-05-19T08:15:11,870 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-05-19T08:15:11,880 copying omicverse/single/_cnv.py -> build/lib/omicverse/single 2026-05-19T08:15:11,883 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-05-19T08:15:11,886 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-05-19T08:15:11,889 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-05-19T08:15:11,893 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-05-19T08:15:11,896 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-05-19T08:15:11,900 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-05-19T08:15:11,903 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-05-19T08:15:11,909 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-05-19T08:15:11,912 copying omicverse/single/_autoresolution.py -> build/lib/omicverse/single 2026-05-19T08:15:11,915 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-05-19T08:15:11,918 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-05-19T08:15:11,922 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-05-19T08:15:11,925 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-05-19T08:15:11,927 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-05-19T08:15:11,931 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-05-19T08:15:11,933 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-05-19T08:15:11,936 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-05-19T08:15:11,938 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-05-19T08:15:11,941 copying omicverse/single/_nmf.py -> build/lib/omicverse/single 2026-05-19T08:15:11,944 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-05-19T08:15:11,947 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-05-19T08:15:11,949 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-05-19T08:15:11,952 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-05-19T08:15:11,955 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-05-19T08:15:11,958 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-05-19T08:15:11,960 copying omicverse/single/_dynamic_features.py -> build/lib/omicverse/single 2026-05-19T08:15:11,964 creating build/lib/omicverse/llm 2026-05-19T08:15:11,965 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,967 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,969 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,973 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,976 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,978 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,981 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,986 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,988 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,991 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,995 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-05-19T08:15:11,998 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-05-19T08:15:12,000 creating build/lib/omicverse/io 2026-05-19T08:15:12,001 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-05-19T08:15:12,003 creating build/lib/omicverse/external 2026-05-19T08:15:12,004 copying omicverse/external/torch_tsne.py -> build/lib/omicverse/external 2026-05-19T08:15:12,007 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-05-19T08:15:12,010 creating build/lib/omicverse/es 2026-05-19T08:15:12,011 copying omicverse/es/_methods.py -> build/lib/omicverse/es 2026-05-19T08:15:12,013 copying omicverse/es/_decouple.py -> build/lib/omicverse/es 2026-05-19T08:15:12,015 copying omicverse/es/_gsea.py -> build/lib/omicverse/es 2026-05-19T08:15:12,017 copying omicverse/es/_aucell.py -> build/lib/omicverse/es 2026-05-19T08:15:12,019 copying omicverse/es/_mlm.py -> build/lib/omicverse/es 2026-05-19T08:15:12,021 copying omicverse/es/_gsva.py -> build/lib/omicverse/es 2026-05-19T08:15:12,024 copying omicverse/es/_viper.py -> build/lib/omicverse/es 2026-05-19T08:15:12,026 copying omicverse/es/_zscore.py -> build/lib/omicverse/es 2026-05-19T08:15:12,029 copying omicverse/es/_consensus.py -> build/lib/omicverse/es 2026-05-19T08:15:12,031 copying omicverse/es/_datatype.py -> build/lib/omicverse/es 2026-05-19T08:15:12,033 copying omicverse/es/_udt.py -> build/lib/omicverse/es 2026-05-19T08:15:12,035 copying omicverse/es/_pv.py -> build/lib/omicverse/es 2026-05-19T08:15:12,037 copying omicverse/es/_ulm.py -> build/lib/omicverse/es 2026-05-19T08:15:12,039 copying omicverse/es/_mdt.py -> build/lib/omicverse/es 2026-05-19T08:15:12,041 copying omicverse/es/_waggr.py -> build/lib/omicverse/es 2026-05-19T08:15:12,043 copying omicverse/es/_data.py -> build/lib/omicverse/es 2026-05-19T08:15:12,046 copying omicverse/es/_net.py -> build/lib/omicverse/es 2026-05-19T08:15:12,048 copying omicverse/es/_engine.py -> build/lib/omicverse/es 2026-05-19T08:15:12,051 copying omicverse/es/_odeps.py -> build/lib/omicverse/es 2026-05-19T08:15:12,052 copying omicverse/es/__init__.py -> build/lib/omicverse/es 2026-05-19T08:15:12,055 copying omicverse/es/_ora.py -> build/lib/omicverse/es 2026-05-19T08:15:12,057 copying omicverse/es/_query_set.py -> build/lib/omicverse/es 2026-05-19T08:15:12,059 copying omicverse/es/_run.py -> build/lib/omicverse/es 2026-05-19T08:15:12,061 copying omicverse/es/_method.py -> build/lib/omicverse/es 2026-05-19T08:15:12,064 creating build/lib/omicverse/metabol 2026-05-19T08:15:12,065 copying omicverse/metabol/_utils.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,067 copying omicverse/metabol/_impute.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,069 copying omicverse/metabol/_integration.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,071 copying omicverse/metabol/_mummichog.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,073 copying omicverse/metabol/_correlation.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,075 copying omicverse/metabol/_multifactor.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,078 copying omicverse/metabol/plotting.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,080 copying omicverse/metabol/_qc.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,082 copying omicverse/metabol/io.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,085 copying omicverse/metabol/_transform.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,086 copying omicverse/metabol/_batch.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,089 copying omicverse/metabol/_msea.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,091 copying omicverse/metabol/_lipidomics.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,093 copying omicverse/metabol/_stats.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,096 copying omicverse/metabol/_fetchers.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,098 copying omicverse/metabol/pymetabo.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,101 copying omicverse/metabol/__init__.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,103 copying omicverse/metabol/_plsda.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,105 copying omicverse/metabol/_norm.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,107 copying omicverse/metabol/_id_mapping.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,109 copying omicverse/metabol/_biomarker.py -> build/lib/omicverse/metabol 2026-05-19T08:15:12,112 creating build/lib/omicverse/micro 2026-05-19T08:15:12,113 copying omicverse/micro/_diversity.py -> build/lib/omicverse/micro 2026-05-19T08:15:12,116 copying omicverse/micro/_pair.py -> build/lib/omicverse/micro 2026-05-19T08:15:12,118 copying omicverse/micro/_meta.py -> build/lib/omicverse/micro 2026-05-19T08:15:12,121 copying omicverse/micro/_utils.py -> build/lib/omicverse/micro 2026-05-19T08:15:12,122 copying omicverse/micro/_phylo.py -> build/lib/omicverse/micro 2026-05-19T08:15:12,124 copying omicverse/micro/_ord.py -> build/lib/omicverse/micro 2026-05-19T08:15:12,126 copying omicverse/micro/_pp.py -> build/lib/omicverse/micro 2026-05-19T08:15:12,128 copying omicverse/micro/__init__.py -> build/lib/omicverse/micro 2026-05-19T08:15:12,130 copying omicverse/micro/_da.py -> build/lib/omicverse/micro 2026-05-19T08:15:12,133 creating build/lib/omicverse/utils/verifier 2026-05-19T08:15:12,134 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-05-19T08:15:12,136 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-05-19T08:15:12,139 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-05-19T08:15:12,141 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-05-19T08:15:12,144 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-05-19T08:15:12,146 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-05-19T08:15:12,149 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-05-19T08:15:12,151 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-05-19T08:15:12,153 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-05-19T08:15:12,156 creating build/lib/omicverse/utils/biocontext 2026-05-19T08:15:12,157 copying omicverse/utils/biocontext/_client.py -> build/lib/omicverse/utils/biocontext 2026-05-19T08:15:12,159 copying omicverse/utils/biocontext/__init__.py -> build/lib/omicverse/utils/biocontext 2026-05-19T08:15:12,161 copying omicverse/utils/biocontext/_tools.py -> build/lib/omicverse/utils/biocontext 2026-05-19T08:15:12,164 creating build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,165 copying omicverse/utils/ovagent/session_facade.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,168 copying omicverse/utils/ovagent/tool_runtime_workspace.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,170 copying omicverse/utils/ovagent/tool_runtime_web.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,172 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,174 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,177 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,179 copying omicverse/utils/ovagent/prompt_templates.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,181 copying omicverse/utils/ovagent/turn_followup.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,183 copying omicverse/utils/ovagent/tool_registry.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,185 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,188 copying omicverse/utils/ovagent/analysis_diagnostics.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,190 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,192 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,194 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,197 copying omicverse/utils/ovagent/tool_runtime_exec.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,200 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,202 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,204 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,207 copying omicverse/utils/ovagent/permission_policy.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,210 copying omicverse/utils/ovagent/event_stream.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,212 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,215 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,217 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,219 copying omicverse/utils/ovagent/context_budget.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,222 copying omicverse/utils/ovagent/analysis_sandbox.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,224 copying omicverse/utils/ovagent/tool_runtime_io.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,227 copying omicverse/utils/ovagent/analysis_transformer.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,229 copying omicverse/utils/ovagent/codegen_tool_facade.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,231 copying omicverse/utils/ovagent/turn_artifacts.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,233 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,235 copying omicverse/utils/ovagent/tool_scheduler.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,238 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,240 copying omicverse/utils/ovagent/repair_loop.py -> build/lib/omicverse/utils/ovagent 2026-05-19T08:15:12,243 creating build/lib/omicverse/utils/harness 2026-05-19T08:15:12,244 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-05-19T08:15:12,246 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-05-19T08:15:12,249 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-05-19T08:15:12,251 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-05-19T08:15:12,253 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-05-19T08:15:12,255 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-05-19T08:15:12,257 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-05-19T08:15:12,260 creating build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,261 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,264 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,266 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,268 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,271 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,274 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,276 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,279 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,281 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,284 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,286 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,288 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,291 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-05-19T08:15:12,293 creating build/lib/omicverse/jarvis/memory 2026-05-19T08:15:12,294 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-05-19T08:15:12,297 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-05-19T08:15:12,299 creating build/lib/omicverse/jarvis/gateway 2026-05-19T08:15:12,300 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-05-19T08:15:12,303 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-05-19T08:15:12,305 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-05-19T08:15:12,307 creating build/lib/omicverse/jarvis/channels 2026-05-19T08:15:12,308 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-05-19T08:15:12,311 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-05-19T08:15:12,315 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-05-19T08:15:12,317 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-05-19T08:15:12,320 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-05-19T08:15:12,323 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-05-19T08:15:12,325 copying omicverse/jarvis/channels/channel_core.py -> build/lib/omicverse/jarvis/channels 2026-05-19T08:15:12,328 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-05-19T08:15:12,331 creating build/lib/omicverse/jarvis/runtime 2026-05-19T08:15:12,332 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-05-19T08:15:12,334 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-05-19T08:15:12,336 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-05-19T08:15:12,337 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-05-19T08:15:12,339 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-05-19T08:15:12,342 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-05-19T08:15:12,344 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-05-19T08:15:12,346 creating build/lib/omicverse/pp/experimental 2026-05-19T08:15:12,347 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-05-19T08:15:12,349 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-05-19T08:15:12,352 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-05-19T08:15:12,354 creating build/lib/omicverse/pp/_scrublet_backend 2026-05-19T08:15:12,355 copying omicverse/pp/_scrublet_backend/scrublet.py -> build/lib/omicverse/pp/_scrublet_backend 2026-05-19T08:15:12,358 copying omicverse/pp/_scrublet_backend/helper_functions.py -> build/lib/omicverse/pp/_scrublet_backend 2026-05-19T08:15:12,361 copying omicverse/pp/_scrublet_backend/__init__.py -> build/lib/omicverse/pp/_scrublet_backend 2026-05-19T08:15:12,363 creating build/lib/omicverse/bulk/_alignment 2026-05-19T08:15:12,364 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-05-19T08:15:12,366 creating build/lib/omicverse/datasets/data_files 2026-05-19T08:15:12,367 copying omicverse/datasets/data_files/smoothDatakNN.py -> build/lib/omicverse/datasets/data_files 2026-05-19T08:15:12,370 creating build/lib/omicverse/mcp/adapters 2026-05-19T08:15:12,371 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-05-19T08:15:12,373 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-05-19T08:15:12,376 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-05-19T08:15:12,378 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-05-19T08:15:12,381 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-05-19T08:15:12,384 creating build/lib/omicverse/single/templates 2026-05-19T08:15:12,385 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-05-19T08:15:12,387 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-05-19T08:15:12,390 creating build/lib/omicverse/llm/utils 2026-05-19T08:15:12,391 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-05-19T08:15:12,394 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-05-19T08:15:12,396 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-05-19T08:15:12,398 creating build/lib/omicverse/llm/dr 2026-05-19T08:15:12,399 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-05-19T08:15:12,401 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-05-19T08:15:12,404 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-05-19T08:15:12,406 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-05-19T08:15:12,408 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-05-19T08:15:12,410 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-05-19T08:15:12,413 creating build/lib/omicverse/llm/UCE 2026-05-19T08:15:12,414 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-05-19T08:15:12,416 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-05-19T08:15:12,418 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-05-19T08:15:12,420 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-05-19T08:15:12,422 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-05-19T08:15:12,424 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-05-19T08:15:12,426 creating build/lib/omicverse/llm/scfoundation 2026-05-19T08:15:12,427 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-05-19T08:15:12,429 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-05-19T08:15:12,431 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-05-19T08:15:12,433 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-05-19T08:15:12,435 creating build/lib/omicverse/llm/scgpt 2026-05-19T08:15:12,436 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-05-19T08:15:12,439 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-05-19T08:15:12,441 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-05-19T08:15:12,443 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-05-19T08:15:12,446 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-05-19T08:15:12,447 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-05-19T08:15:12,450 creating build/lib/omicverse/llm/domain_research 2026-05-19T08:15:12,451 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-05-19T08:15:12,453 creating build/lib/omicverse/llm/CellPLM 2026-05-19T08:15:12,454 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-05-19T08:15:12,456 creating build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,457 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,460 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,462 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,465 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,468 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,471 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,473 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,476 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,478 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,481 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,484 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,486 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-05-19T08:15:12,490 creating build/lib/omicverse/llm/dr/write 2026-05-19T08:15:12,491 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-05-19T08:15:12,493 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-05-19T08:15:12,495 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-05-19T08:15:12,498 creating build/lib/omicverse/llm/dr/verify 2026-05-19T08:15:12,499 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-05-19T08:15:12,501 creating build/lib/omicverse/llm/dr/retrievers 2026-05-19T08:15:12,502 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-05-19T08:15:12,505 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-05-19T08:15:12,508 creating build/lib/omicverse/llm/dr/scope 2026-05-19T08:15:12,509 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-05-19T08:15:12,511 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-05-19T08:15:12,512 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-05-19T08:15:12,514 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-05-19T08:15:12,516 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-05-19T08:15:12,518 creating build/lib/omicverse/llm/dr/research 2026-05-19T08:15:12,519 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-05-19T08:15:12,521 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-05-19T08:15:12,523 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-05-19T08:15:12,525 creating build/lib/omicverse/llm/UCE/data_proc 2026-05-19T08:15:12,526 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-05-19T08:15:12,528 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-05-19T08:15:12,531 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-05-19T08:15:12,533 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-05-19T08:15:12,535 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-05-19T08:15:12,538 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:12,539 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:12,541 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:12,544 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:12,545 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:12,548 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:12,550 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:12,552 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:12,554 creating build/lib/omicverse/llm/scgpt/utils 2026-05-19T08:15:12,555 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-05-19T08:15:12,558 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-05-19T08:15:12,560 creating build/lib/omicverse/llm/scgpt/tasks 2026-05-19T08:15:12,561 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-05-19T08:15:12,564 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-05-19T08:15:12,566 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-05-19T08:15:12,568 creating build/lib/omicverse/llm/scgpt/scbank 2026-05-19T08:15:12,569 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-05-19T08:15:12,571 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-05-19T08:15:12,574 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-05-19T08:15:12,576 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-05-19T08:15:12,577 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-05-19T08:15:12,580 creating build/lib/omicverse/llm/scgpt/model 2026-05-19T08:15:12,581 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-05-19T08:15:12,583 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-05-19T08:15:12,585 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-05-19T08:15:12,588 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-05-19T08:15:12,591 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-05-19T08:15:12,592 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-05-19T08:15:12,595 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-05-19T08:15:12,595 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-05-19T08:15:12,598 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-05-19T08:15:12,600 creating build/lib/omicverse/llm/domain_research/write 2026-05-19T08:15:12,601 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-05-19T08:15:12,603 creating build/lib/omicverse/llm/domain_research/retrievers 2026-05-19T08:15:12,604 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-05-19T08:15:12,607 creating build/lib/omicverse/llm/CellPLM/utils 2026-05-19T08:15:12,608 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-05-19T08:15:12,610 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-05-19T08:15:12,612 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-05-19T08:15:12,615 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-05-19T08:15:12,617 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-05-19T08:15:12,619 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-05-19T08:15:12,621 creating build/lib/omicverse/llm/CellPLM/layer 2026-05-19T08:15:12,622 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-05-19T08:15:12,625 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-05-19T08:15:12,627 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-05-19T08:15:12,629 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-05-19T08:15:12,632 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-05-19T08:15:12,634 creating build/lib/omicverse/llm/CellPLM/head 2026-05-19T08:15:12,635 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-05-19T08:15:12,637 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-05-19T08:15:12,639 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:12,640 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:12,643 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:12,645 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:12,647 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:12,649 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:12,652 creating build/lib/omicverse/llm/CellPLM/decoder 2026-05-19T08:15:12,653 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-05-19T08:15:12,655 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-05-19T08:15:12,657 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-05-19T08:15:12,659 creating build/lib/omicverse/llm/CellPLM/objective 2026-05-19T08:15:12,660 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-05-19T08:15:12,662 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-05-19T08:15:12,664 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-05-19T08:15:12,667 creating build/lib/omicverse/llm/CellPLM/model 2026-05-19T08:15:12,668 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-05-19T08:15:12,670 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-05-19T08:15:12,672 creating build/lib/omicverse/llm/CellPLM/encoder 2026-05-19T08:15:12,673 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-05-19T08:15:12,675 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-05-19T08:15:12,677 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-05-19T08:15:12,679 creating build/lib/omicverse/llm/CellPLM/latent 2026-05-19T08:15:12,680 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-05-19T08:15:12,682 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-05-19T08:15:12,683 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-05-19T08:15:12,686 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-05-19T08:15:12,688 creating build/lib/omicverse/llm/CellPLM/embedder 2026-05-19T08:15:12,689 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-05-19T08:15:12,691 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-05-19T08:15:12,694 creating build/lib/omicverse/llm/geneformer/mtl 2026-05-19T08:15:12,694 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-05-19T08:15:12,697 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-05-19T08:15:12,700 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-05-19T08:15:12,702 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-05-19T08:15:12,705 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-05-19T08:15:12,706 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-05-19T08:15:12,708 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-05-19T08:15:12,711 creating build/lib/omicverse/io/general 2026-05-19T08:15:12,712 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-05-19T08:15:12,714 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-05-19T08:15:12,716 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-05-19T08:15:12,719 creating build/lib/omicverse/io/spatial 2026-05-19T08:15:12,720 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-05-19T08:15:12,722 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-05-19T08:15:12,724 copying omicverse/io/spatial/_atera.py -> build/lib/omicverse/io/spatial 2026-05-19T08:15:12,727 copying omicverse/io/spatial/_xenium.py -> build/lib/omicverse/io/spatial 2026-05-19T08:15:12,729 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-05-19T08:15:12,732 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-05-19T08:15:12,734 creating build/lib/omicverse/io/bulk 2026-05-19T08:15:12,735 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-05-19T08:15:12,737 creating build/lib/omicverse/io/single 2026-05-19T08:15:12,738 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-05-19T08:15:12,741 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-05-19T08:15:12,743 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-05-19T08:15:12,744 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-05-19T08:15:12,748 creating build/lib/omicverse/external/commot 2026-05-19T08:15:12,749 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-05-19T08:15:12,751 creating build/lib/omicverse/external/torch_pca 2026-05-19T08:15:12,752 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-05-19T08:15:12,754 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-05-19T08:15:12,756 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-05-19T08:15:12,758 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-05-19T08:15:12,761 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-05-19T08:15:12,763 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-05-19T08:15:12,765 creating build/lib/omicverse/external/SpatialDE 2026-05-19T08:15:12,766 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-05-19T08:15:12,768 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-05-19T08:15:12,770 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-05-19T08:15:12,773 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-05-19T08:15:12,775 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-05-19T08:15:12,776 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-05-19T08:15:12,779 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-05-19T08:15:12,781 creating build/lib/omicverse/external/popv 2026-05-19T08:15:12,782 copying omicverse/external/popv/preprocessing.py -> build/lib/omicverse/external/popv 2026-05-19T08:15:12,785 copying omicverse/external/popv/_utils.py -> build/lib/omicverse/external/popv 2026-05-19T08:15:12,787 copying omicverse/external/popv/annotation.py -> build/lib/omicverse/external/popv 2026-05-19T08:15:12,790 copying omicverse/external/popv/visualization.py -> build/lib/omicverse/external/popv 2026-05-19T08:15:12,792 copying omicverse/external/popv/_settings.py -> build/lib/omicverse/external/popv 2026-05-19T08:15:12,795 copying omicverse/external/popv/__init__.py -> build/lib/omicverse/external/popv 2026-05-19T08:15:12,797 creating build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,798 copying omicverse/external/pyensembl/species.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,801 copying omicverse/external/pyensembl/exon.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,803 copying omicverse/external/pyensembl/locus.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,805 copying omicverse/external/pyensembl/normalization.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,807 copying omicverse/external/pyensembl/search.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,809 copying omicverse/external/pyensembl/reference_name.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,810 copying omicverse/external/pyensembl/serializable.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,813 copying omicverse/external/pyensembl/download_cache.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,815 copying omicverse/external/pyensembl/ensembl_release.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,817 copying omicverse/external/pyensembl/sequence_data.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,819 copying omicverse/external/pyensembl/fasta.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,822 copying omicverse/external/pyensembl/ensembl_url_templates.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,824 copying omicverse/external/pyensembl/shell.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,826 copying omicverse/external/pyensembl/version.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,828 copying omicverse/external/pyensembl/__init__.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,829 copying omicverse/external/pyensembl/common.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,831 copying omicverse/external/pyensembl/database.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,834 copying omicverse/external/pyensembl/transcript.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,836 copying omicverse/external/pyensembl/ensembl_versions.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,838 copying omicverse/external/pyensembl/locus_with_genome.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,840 copying omicverse/external/pyensembl/genome.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,842 copying omicverse/external/pyensembl/gene.py -> build/lib/omicverse/external/pyensembl 2026-05-19T08:15:12,845 creating build/lib/omicverse/external/GNTD 2026-05-19T08:15:12,845 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-05-19T08:15:12,848 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-05-19T08:15:12,850 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-05-19T08:15:12,852 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-05-19T08:15:12,854 creating build/lib/omicverse/external/spaco 2026-05-19T08:15:12,855 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-05-19T08:15:12,858 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-05-19T08:15:12,860 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-05-19T08:15:12,863 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-05-19T08:15:12,865 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-05-19T08:15:12,867 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-05-19T08:15:12,869 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-05-19T08:15:12,871 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-05-19T08:15:12,873 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-05-19T08:15:12,875 creating build/lib/omicverse/external/tosica 2026-05-19T08:15:12,876 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-05-19T08:15:12,879 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-05-19T08:15:12,881 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-05-19T08:15:12,884 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-05-19T08:15:12,886 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-05-19T08:15:12,888 creating build/lib/omicverse/external/palantir 2026-05-19T08:15:12,889 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,892 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,894 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,896 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,898 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,900 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,902 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,904 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,907 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,910 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,912 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-05-19T08:15:12,914 creating build/lib/omicverse/external/starfysh 2026-05-19T08:15:12,915 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-05-19T08:15:12,918 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-05-19T08:15:12,920 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-05-19T08:15:12,924 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-05-19T08:15:12,926 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-05-19T08:15:12,929 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-05-19T08:15:12,931 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-05-19T08:15:12,932 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-05-19T08:15:12,935 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-05-19T08:15:12,938 creating build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,939 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,941 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,944 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,946 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,948 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,950 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,952 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,954 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,956 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,958 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,960 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,962 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,964 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-05-19T08:15:12,966 creating build/lib/omicverse/external/BINARY 2026-05-19T08:15:12,967 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-05-19T08:15:12,969 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-05-19T08:15:12,971 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-05-19T08:15:12,973 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-05-19T08:15:12,975 creating build/lib/omicverse/external/STAGATE_pyG 2026-05-19T08:15:12,976 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-05-19T08:15:12,979 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-05-19T08:15:12,981 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-05-19T08:15:12,982 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-05-19T08:15:12,985 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-05-19T08:15:12,987 creating build/lib/omicverse/external/cnmf 2026-05-19T08:15:12,988 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-05-19T08:15:12,990 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-05-19T08:15:12,994 creating build/lib/omicverse/external/gseapy 2026-05-19T08:15:12,995 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-05-19T08:15:12,998 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-05-19T08:15:13,001 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-05-19T08:15:13,003 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-05-19T08:15:13,006 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-05-19T08:15:13,008 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-05-19T08:15:13,011 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-05-19T08:15:13,013 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-05-19T08:15:13,015 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-05-19T08:15:13,018 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-05-19T08:15:13,020 creating build/lib/omicverse/external/mpl_chord 2026-05-19T08:15:13,021 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-05-19T08:15:13,023 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-05-19T08:15:13,026 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-05-19T08:15:13,029 creating build/lib/omicverse/external/forcedirect2 2026-05-19T08:15:13,030 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-05-19T08:15:13,032 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-05-19T08:15:13,034 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-05-19T08:15:13,036 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-05-19T08:15:13,039 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-05-19T08:15:13,041 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-05-19T08:15:13,044 creating build/lib/omicverse/external/cytotrace2 2026-05-19T08:15:13,045 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-05-19T08:15:13,047 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-05-19T08:15:13,049 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-05-19T08:15:13,051 creating build/lib/omicverse/external/topact 2026-05-19T08:15:13,052 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-05-19T08:15:13,054 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-05-19T08:15:13,056 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-05-19T08:15:13,058 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-05-19T08:15:13,061 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-05-19T08:15:13,063 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-05-19T08:15:13,064 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-05-19T08:15:13,066 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-05-19T08:15:13,070 creating build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,071 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,073 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,075 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,077 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,078 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,081 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,083 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,085 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,087 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,088 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,090 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,092 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,094 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,096 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,097 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,099 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,102 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,104 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,106 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,108 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,111 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-05-19T08:15:13,113 creating build/lib/omicverse/external/scdiffusion 2026-05-19T08:15:13,114 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-05-19T08:15:13,116 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-05-19T08:15:13,118 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-05-19T08:15:13,120 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-05-19T08:15:13,123 creating build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,124 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,126 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,128 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,131 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,133 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,135 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,137 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,139 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,142 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,144 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,147 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,149 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-05-19T08:15:13,151 creating build/lib/omicverse/external/PyWGCNA 2026-05-19T08:15:13,152 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-05-19T08:15:13,155 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-05-19T08:15:13,157 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-05-19T08:15:13,160 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-05-19T08:15:13,167 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-05-19T08:15:13,169 creating build/lib/omicverse/external/scSLAT 2026-05-19T08:15:13,170 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-05-19T08:15:13,172 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-05-19T08:15:13,174 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-05-19T08:15:13,177 creating build/lib/omicverse/external/umap_pytorch 2026-05-19T08:15:13,178 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-05-19T08:15:13,180 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-05-19T08:15:13,182 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-05-19T08:15:13,185 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-05-19T08:15:13,187 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-05-19T08:15:13,189 copying omicverse/external/umap_pytorch/fuzzy_gpu.py -> build/lib/omicverse/external/umap_pytorch 2026-05-19T08:15:13,192 creating build/lib/omicverse/external/VIA 2026-05-19T08:15:13,193 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-05-19T08:15:13,199 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-05-19T08:15:13,205 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-05-19T08:15:13,210 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-05-19T08:15:13,214 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-05-19T08:15:13,216 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-05-19T08:15:13,218 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-05-19T08:15:13,221 creating build/lib/omicverse/external/spatrio 2026-05-19T08:15:13,222 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-05-19T08:15:13,224 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-05-19T08:15:13,227 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-05-19T08:15:13,229 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-05-19T08:15:13,230 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-05-19T08:15:13,233 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-05-19T08:15:13,235 creating build/lib/omicverse/external/scanorama 2026-05-19T08:15:13,236 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-05-19T08:15:13,238 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-05-19T08:15:13,241 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-05-19T08:15:13,243 creating build/lib/omicverse/external/datacollect 2026-05-19T08:15:13,244 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-05-19T08:15:13,247 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-05-19T08:15:13,250 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-05-19T08:15:13,253 creating build/lib/omicverse/external/bulk2single 2026-05-19T08:15:13,254 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-05-19T08:15:13,256 creating build/lib/omicverse/external/flowsig 2026-05-19T08:15:13,257 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-05-19T08:15:13,259 creating build/lib/omicverse/external/bin2cell 2026-05-19T08:15:13,260 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-05-19T08:15:13,264 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-05-19T08:15:13,266 creating build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,267 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,270 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,272 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,274 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,276 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,279 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,281 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,284 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,286 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,288 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,290 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,292 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,294 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,296 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,298 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-05-19T08:15:13,301 creating build/lib/omicverse/external/PROST 2026-05-19T08:15:13,302 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-05-19T08:15:13,305 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-05-19T08:15:13,307 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-05-19T08:15:13,310 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-05-19T08:15:13,313 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-05-19T08:15:13,315 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-05-19T08:15:13,318 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-05-19T08:15:13,321 creating build/lib/omicverse/external/CAST 2026-05-19T08:15:13,322 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-05-19T08:15:13,325 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-05-19T08:15:13,327 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-05-19T08:15:13,330 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-05-19T08:15:13,333 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-05-19T08:15:13,335 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-05-19T08:15:13,338 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-05-19T08:15:13,342 creating build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,343 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,346 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,348 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,351 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,354 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,357 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,360 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,362 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,365 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,367 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,370 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-05-19T08:15:13,373 creating build/lib/omicverse/external/cellcharter 2026-05-19T08:15:13,375 copying omicverse/external/cellcharter/_utils.py -> build/lib/omicverse/external/cellcharter 2026-05-19T08:15:13,377 copying omicverse/external/cellcharter/_autok.py -> build/lib/omicverse/external/cellcharter 2026-05-19T08:15:13,380 copying omicverse/external/cellcharter/_graph.py -> build/lib/omicverse/external/cellcharter 2026-05-19T08:15:13,382 copying omicverse/external/cellcharter/__init__.py -> build/lib/omicverse/external/cellcharter 2026-05-19T08:15:13,384 copying omicverse/external/cellcharter/_aggr.py -> build/lib/omicverse/external/cellcharter 2026-05-19T08:15:13,386 copying omicverse/external/cellcharter/_gmm.py -> build/lib/omicverse/external/cellcharter 2026-05-19T08:15:13,389 creating build/lib/omicverse/external/STT 2026-05-19T08:15:13,391 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-05-19T08:15:13,393 creating build/lib/omicverse/external/mofapy2 2026-05-19T08:15:13,395 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-05-19T08:15:13,397 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-05-19T08:15:13,399 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-05-19T08:15:13,402 creating build/lib/omicverse/external/somde 2026-05-19T08:15:13,403 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-05-19T08:15:13,407 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-05-19T08:15:13,409 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-05-19T08:15:13,412 creating build/lib/omicverse/external/NaiveDE 2026-05-19T08:15:13,414 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-05-19T08:15:13,416 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-05-19T08:15:13,418 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-05-19T08:15:13,421 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-05-19T08:15:13,423 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-05-19T08:15:13,425 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-05-19T08:15:13,427 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-05-19T08:15:13,430 creating build/lib/omicverse/external/scMulan 2026-05-19T08:15:13,432 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-05-19T08:15:13,434 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-05-19T08:15:13,437 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-05-19T08:15:13,440 creating build/lib/omicverse/external/gtfparse 2026-05-19T08:15:13,441 copying omicverse/external/gtfparse/create_missing_features.py -> build/lib/omicverse/external/gtfparse 2026-05-19T08:15:13,445 copying omicverse/external/gtfparse/read_gtf.py -> build/lib/omicverse/external/gtfparse 2026-05-19T08:15:13,447 copying omicverse/external/gtfparse/attribute_parsing.py -> build/lib/omicverse/external/gtfparse 2026-05-19T08:15:13,450 copying omicverse/external/gtfparse/parsing_error.py -> build/lib/omicverse/external/gtfparse 2026-05-19T08:15:13,452 copying omicverse/external/gtfparse/__init__.py -> build/lib/omicverse/external/gtfparse 2026-05-19T08:15:13,455 creating build/lib/omicverse/external/monocle2_py 2026-05-19T08:15:13,457 copying omicverse/external/monocle2_py/plotting.py -> build/lib/omicverse/external/monocle2_py 2026-05-19T08:15:13,462 copying omicverse/external/monocle2_py/core.py -> build/lib/omicverse/external/monocle2_py 2026-05-19T08:15:13,465 copying omicverse/external/monocle2_py/utils.py -> build/lib/omicverse/external/monocle2_py 2026-05-19T08:15:13,467 copying omicverse/external/monocle2_py/clustering.py -> build/lib/omicverse/external/monocle2_py 2026-05-19T08:15:13,470 copying omicverse/external/monocle2_py/differential.py -> build/lib/omicverse/external/monocle2_py 2026-05-19T08:15:13,473 copying omicverse/external/monocle2_py/ddrtree.py -> build/lib/omicverse/external/monocle2_py 2026-05-19T08:15:13,476 copying omicverse/external/monocle2_py/__init__.py -> build/lib/omicverse/external/monocle2_py 2026-05-19T08:15:13,478 copying omicverse/external/monocle2_py/ordering.py -> build/lib/omicverse/external/monocle2_py 2026-05-19T08:15:13,482 copying omicverse/external/monocle2_py/dimension_reduction.py -> build/lib/omicverse/external/monocle2_py 2026-05-19T08:15:13,485 creating build/lib/omicverse/external/graphvelo 2026-05-19T08:15:13,486 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-05-19T08:15:13,489 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-05-19T08:15:13,492 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-05-19T08:15:13,495 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-05-19T08:15:13,498 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-05-19T08:15:13,502 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-05-19T08:15:13,505 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-05-19T08:15:13,508 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-05-19T08:15:13,511 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-05-19T08:15:13,513 creating build/lib/omicverse/external/CEFCON 2026-05-19T08:15:13,515 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-05-19T08:15:13,518 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-05-19T08:15:13,520 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-05-19T08:15:13,523 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-05-19T08:15:13,525 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-05-19T08:15:13,528 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-05-19T08:15:13,530 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-05-19T08:15:13,533 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-05-19T08:15:13,534 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-05-19T08:15:13,537 creating build/lib/omicverse/external/tape 2026-05-19T08:15:13,538 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-05-19T08:15:13,540 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-05-19T08:15:13,543 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-05-19T08:15:13,545 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-05-19T08:15:13,547 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-05-19T08:15:13,550 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-05-19T08:15:13,552 creating build/lib/omicverse/external/ctxcore 2026-05-19T08:15:13,553 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-05-19T08:15:13,556 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-05-19T08:15:13,558 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-05-19T08:15:13,560 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-05-19T08:15:13,563 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-05-19T08:15:13,566 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-05-19T08:15:13,568 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-05-19T08:15:13,570 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-05-19T08:15:13,573 creating build/lib/omicverse/external/STAligner 2026-05-19T08:15:13,574 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-05-19T08:15:13,576 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-05-19T08:15:13,578 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-05-19T08:15:13,580 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-05-19T08:15:13,582 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-05-19T08:15:13,585 creating build/lib/omicverse/external/gaston 2026-05-19T08:15:13,586 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,588 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,591 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,592 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,594 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,597 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,599 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,600 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,602 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,604 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,606 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,608 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,610 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,612 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,614 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,615 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-05-19T08:15:13,618 creating build/lib/omicverse/external/nocd 2026-05-19T08:15:13,619 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-05-19T08:15:13,621 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-05-19T08:15:13,622 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-05-19T08:15:13,625 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-05-19T08:15:13,627 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-05-19T08:15:13,629 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-05-19T08:15:13,631 creating build/lib/omicverse/external/GraphST 2026-05-19T08:15:13,632 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-05-19T08:15:13,634 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-05-19T08:15:13,637 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-05-19T08:15:13,639 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-05-19T08:15:13,641 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-05-19T08:15:13,644 creating build/lib/omicverse/external/cellanova 2026-05-19T08:15:13,645 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-05-19T08:15:13,647 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-05-19T08:15:13,649 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-05-19T08:15:13,651 creating build/lib/omicverse/external/harmony 2026-05-19T08:15:13,652 copying omicverse/external/harmony/_harmony_cpu.py -> build/lib/omicverse/external/harmony 2026-05-19T08:15:13,654 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-05-19T08:15:13,656 copying omicverse/external/harmony/_harmony_mlx.py -> build/lib/omicverse/external/harmony 2026-05-19T08:15:13,658 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-05-19T08:15:13,661 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-05-19T08:15:13,663 creating build/lib/omicverse/external/spaceflow 2026-05-19T08:15:13,664 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-05-19T08:15:13,666 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-05-19T08:15:13,667 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-05-19T08:15:13,670 creating build/lib/omicverse/external/space/cell2location 2026-05-19T08:15:13,672 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-05-19T08:15:13,674 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-05-19T08:15:13,676 creating build/lib/omicverse/external/space/cell2location/utils 2026-05-19T08:15:13,677 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-05-19T08:15:13,679 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-05-19T08:15:13,681 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-05-19T08:15:13,683 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-05-19T08:15:13,684 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-05-19T08:15:13,687 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-05-19T08:15:13,689 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-05-19T08:15:13,691 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-05-19T08:15:13,693 creating build/lib/omicverse/external/space/cell2location/nn 2026-05-19T08:15:13,694 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-05-19T08:15:13,696 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-05-19T08:15:13,699 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-05-19T08:15:13,701 creating build/lib/omicverse/external/space/cell2location/models 2026-05-19T08:15:13,702 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-05-19T08:15:13,705 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-05-19T08:15:13,708 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-05-19T08:15:13,710 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-05-19T08:15:13,713 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-05-19T08:15:13,715 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-05-19T08:15:13,716 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-05-19T08:15:13,718 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-05-19T08:15:13,720 creating build/lib/omicverse/external/space/cell2location/plt 2026-05-19T08:15:13,721 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-05-19T08:15:13,723 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-05-19T08:15:13,726 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-05-19T08:15:13,728 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-05-19T08:15:13,730 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-05-19T08:15:13,732 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-05-19T08:15:13,734 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-05-19T08:15:13,736 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-05-19T08:15:13,739 creating build/lib/omicverse/external/space/cell2location/distributions 2026-05-19T08:15:13,740 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-05-19T08:15:13,742 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-05-19T08:15:13,745 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-05-19T08:15:13,747 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-05-19T08:15:13,749 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-05-19T08:15:13,751 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-05-19T08:15:13,752 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-05-19T08:15:13,755 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-05-19T08:15:13,758 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-05-19T08:15:13,760 creating build/lib/omicverse/external/space/cell2location/models/base 2026-05-19T08:15:13,761 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-05-19T08:15:13,764 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-05-19T08:15:13,766 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-05-19T08:15:13,768 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-05-19T08:15:13,770 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-05-19T08:15:13,772 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-05-19T08:15:13,773 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-05-19T08:15:13,775 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-05-19T08:15:13,778 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-05-19T08:15:13,780 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-05-19T08:15:13,781 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-05-19T08:15:13,783 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-05-19T08:15:13,785 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-05-19T08:15:13,788 creating build/lib/omicverse/external/commot/preprocessing 2026-05-19T08:15:13,789 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-05-19T08:15:13,791 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-05-19T08:15:13,793 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-05-19T08:15:13,795 creating build/lib/omicverse/external/commot/plotting 2026-05-19T08:15:13,796 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-05-19T08:15:13,800 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-05-19T08:15:13,802 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-05-19T08:15:13,805 creating build/lib/omicverse/external/commot/_utils 2026-05-19T08:15:13,806 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-05-19T08:15:13,808 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-05-19T08:15:13,810 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-05-19T08:15:13,812 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-05-19T08:15:13,814 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-05-19T08:15:13,817 creating build/lib/omicverse/external/commot/_optimal_transport 2026-05-19T08:15:13,818 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-05-19T08:15:13,821 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-05-19T08:15:13,824 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-05-19T08:15:13,826 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-05-19T08:15:13,828 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-05-19T08:15:13,830 creating build/lib/omicverse/external/commot/tools 2026-05-19T08:15:13,831 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-05-19T08:15:13,835 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-05-19T08:15:13,838 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-05-19T08:15:13,841 creating build/lib/omicverse/external/popv/hub 2026-05-19T08:15:13,842 copying omicverse/external/popv/hub/_template.py -> build/lib/omicverse/external/popv/hub 2026-05-19T08:15:13,844 copying omicverse/external/popv/hub/_get_metrics.py -> build/lib/omicverse/external/popv/hub 2026-05-19T08:15:13,846 copying omicverse/external/popv/hub/__init__.py -> build/lib/omicverse/external/popv/hub 2026-05-19T08:15:13,847 copying omicverse/external/popv/hub/_model.py -> build/lib/omicverse/external/popv/hub 2026-05-19T08:15:13,850 copying omicverse/external/popv/hub/_metadata.py -> build/lib/omicverse/external/popv/hub 2026-05-19T08:15:13,853 creating build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,854 copying omicverse/external/popv/algorithms/_celltypist.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,856 copying omicverse/external/popv/algorithms/_svm.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,858 copying omicverse/external/popv/algorithms/_scvi.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,861 copying omicverse/external/popv/algorithms/_harmony.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,863 copying omicverse/external/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,865 copying omicverse/external/popv/algorithms/_bbknn.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,867 copying omicverse/external/popv/algorithms/_xgboost.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,869 copying omicverse/external/popv/algorithms/_rf.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,871 copying omicverse/external/popv/algorithms/_scanvi.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,874 copying omicverse/external/popv/algorithms/_onclass.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,876 copying omicverse/external/popv/algorithms/_scanorama.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,878 copying omicverse/external/popv/algorithms/__init__.py -> build/lib/omicverse/external/popv/algorithms 2026-05-19T08:15:13,881 creating build/lib/omicverse/external/spaco/external 2026-05-19T08:15:13,882 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-05-19T08:15:13,884 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-05-19T08:15:13,887 creating build/lib/omicverse/external/latentvelo/plotting 2026-05-19T08:15:13,888 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-05-19T08:15:13,890 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-05-19T08:15:13,893 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-05-19T08:15:13,895 creating build/lib/omicverse/external/latentvelo/models 2026-05-19T08:15:13,896 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-05-19T08:15:13,899 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-05-19T08:15:13,901 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-05-19T08:15:13,904 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-05-19T08:15:13,906 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-05-19T08:15:13,909 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-05-19T08:15:13,911 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-05-19T08:15:13,915 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-05-19T08:15:13,917 creating build/lib/omicverse/external/latentvelo/evaluation 2026-05-19T08:15:13,918 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-05-19T08:15:13,920 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-05-19T08:15:13,922 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-05-19T08:15:13,925 creating build/lib/omicverse/external/latentvelo/tools 2026-05-19T08:15:13,926 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-05-19T08:15:13,927 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-05-19T08:15:13,929 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-05-19T08:15:13,931 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-05-19T08:15:13,933 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-05-19T08:15:13,936 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,937 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,939 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,941 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,943 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,945 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,948 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,950 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,951 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,953 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,956 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,958 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,961 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,963 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,965 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,967 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,969 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,971 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,973 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:13,976 creating build/lib/omicverse/external/scdiffusion/VAE 2026-05-19T08:15:13,977 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-05-19T08:15:13,979 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-05-19T08:15:13,981 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-05-19T08:15:13,984 creating build/lib/omicverse/external/scSLAT/model 2026-05-19T08:15:13,985 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-05-19T08:15:13,987 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-05-19T08:15:13,989 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-05-19T08:15:13,991 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-05-19T08:15:13,994 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-05-19T08:15:13,995 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-05-19T08:15:13,998 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-05-19T08:15:14,000 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-05-19T08:15:14,002 creating build/lib/omicverse/external/scSLAT/viz 2026-05-19T08:15:14,003 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-05-19T08:15:14,005 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-05-19T08:15:14,008 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-05-19T08:15:14,010 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-05-19T08:15:14,011 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-05-19T08:15:14,013 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-05-19T08:15:14,016 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-05-19T08:15:14,017 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-05-19T08:15:14,019 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-05-19T08:15:14,022 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-05-19T08:15:14,024 creating build/lib/omicverse/external/datacollect/utils 2026-05-19T08:15:14,025 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-05-19T08:15:14,028 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-05-19T08:15:14,029 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-05-19T08:15:14,032 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-05-19T08:15:14,034 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-05-19T08:15:14,036 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-05-19T08:15:14,041 creating build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,042 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,045 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,048 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,051 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,054 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,056 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,059 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,062 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,065 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,068 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,072 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,075 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,078 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,081 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,084 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,087 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,090 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,093 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,096 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,099 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,102 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,104 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,107 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,111 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,113 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,116 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,118 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,121 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,123 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,126 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,129 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,132 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,135 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,137 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-05-19T08:15:14,141 creating build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,142 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,144 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,147 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,149 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,152 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,154 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,156 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,159 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,161 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,164 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,166 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,168 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,171 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,173 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,175 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,177 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,180 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,182 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,185 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,187 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,190 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,191 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-05-19T08:15:14,194 creating build/lib/omicverse/external/datacollect/config 2026-05-19T08:15:14,195 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-05-19T08:15:14,197 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-05-19T08:15:14,200 creating build/lib/omicverse/external/datacollect/api/pathways 2026-05-19T08:15:14,201 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-05-19T08:15:14,203 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-05-19T08:15:14,205 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-05-19T08:15:14,207 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-05-19T08:15:14,210 creating build/lib/omicverse/external/datacollect/api/proteins 2026-05-19T08:15:14,211 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-05-19T08:15:14,213 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-05-19T08:15:14,215 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-05-19T08:15:14,217 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-05-19T08:15:14,219 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-05-19T08:15:14,221 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-05-19T08:15:14,223 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-05-19T08:15:14,226 creating build/lib/omicverse/external/datacollect/api/genomics 2026-05-19T08:15:14,227 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-05-19T08:15:14,230 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-05-19T08:15:14,233 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-05-19T08:15:14,235 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-05-19T08:15:14,237 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-05-19T08:15:14,240 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-05-19T08:15:14,242 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-05-19T08:15:14,244 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-05-19T08:15:14,247 creating build/lib/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:14,248 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:14,251 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:14,254 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:14,256 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:14,258 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:14,261 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:14,263 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:14,265 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:14,267 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:14,270 creating build/lib/omicverse/external/datacollect/api/expression 2026-05-19T08:15:14,271 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-05-19T08:15:14,273 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-05-19T08:15:14,275 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-05-19T08:15:14,277 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-05-19T08:15:14,280 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-05-19T08:15:14,282 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-05-19T08:15:14,285 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,286 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,288 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,290 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,292 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,295 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,296 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,298 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,300 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,303 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,304 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,307 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,309 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:14,312 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,313 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,315 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,318 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,320 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,322 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,324 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,328 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,330 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,333 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,335 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:14,338 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:14,339 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:14,341 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:14,343 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:14,345 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:14,347 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:14,350 creating build/lib/omicverse/external/flowsig/preprocessing 2026-05-19T08:15:14,351 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-05-19T08:15:14,353 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-05-19T08:15:14,356 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-05-19T08:15:14,358 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-05-19T08:15:14,360 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-05-19T08:15:14,363 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-05-19T08:15:14,365 creating build/lib/omicverse/external/flowsig/utilities 2026-05-19T08:15:14,366 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-05-19T08:15:14,369 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-05-19T08:15:14,371 creating build/lib/omicverse/external/flowsig/plotting 2026-05-19T08:15:14,372 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-05-19T08:15:14,375 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-05-19T08:15:14,377 creating build/lib/omicverse/external/flowsig/tools 2026-05-19T08:15:14,378 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-05-19T08:15:14,380 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-05-19T08:15:14,382 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-05-19T08:15:14,384 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-05-19T08:15:14,386 creating build/lib/omicverse/external/CAST/model 2026-05-19T08:15:14,387 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-05-19T08:15:14,389 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-05-19T08:15:14,391 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-05-19T08:15:14,393 creating build/lib/omicverse/external/STT/pl 2026-05-19T08:15:14,394 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-05-19T08:15:14,397 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-05-19T08:15:14,400 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-05-19T08:15:14,402 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-05-19T08:15:14,404 creating build/lib/omicverse/external/STT/tl 2026-05-19T08:15:14,405 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-05-19T08:15:14,407 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-05-19T08:15:14,409 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-05-19T08:15:14,412 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-05-19T08:15:14,414 creating build/lib/omicverse/external/mofapy2/core 2026-05-19T08:15:14,415 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-05-19T08:15:14,417 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-05-19T08:15:14,419 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-05-19T08:15:14,422 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-05-19T08:15:14,423 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-05-19T08:15:14,426 creating build/lib/omicverse/external/mofapy2/simulate 2026-05-19T08:15:14,427 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-05-19T08:15:14,429 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-05-19T08:15:14,431 creating build/lib/omicverse/external/mofapy2/build_model 2026-05-19T08:15:14,432 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-05-19T08:15:14,435 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-05-19T08:15:14,437 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-05-19T08:15:14,440 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-05-19T08:15:14,442 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-05-19T08:15:14,444 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-05-19T08:15:14,446 creating build/lib/omicverse/external/mofapy2/run 2026-05-19T08:15:14,447 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-05-19T08:15:14,451 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-05-19T08:15:14,453 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,454 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,457 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,459 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,461 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,463 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,465 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,467 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,471 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,473 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,475 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,478 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,479 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,482 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,484 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,486 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,488 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,490 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,492 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:14,495 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,496 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,499 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,501 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,503 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,505 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,507 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,509 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,512 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,514 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,516 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,518 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:14,521 creating build/lib/omicverse/external/single/arboreto 2026-05-19T08:15:14,523 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-05-19T08:15:14,525 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-05-19T08:15:14,528 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-05-19T08:15:14,530 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-05-19T08:15:14,532 creating build/lib/omicverse/external/scMulan/utils 2026-05-19T08:15:14,533 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-05-19T08:15:14,535 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-05-19T08:15:14,537 creating build/lib/omicverse/external/scMulan/model 2026-05-19T08:15:14,538 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-05-19T08:15:14,541 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-05-19T08:15:14,544 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-05-19T08:15:14,545 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-05-19T08:15:14,548 creating build/lib/omicverse/external/CEFCON/resources 2026-05-19T08:15:14,549 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-05-19T08:15:14,552 creating build/lib/omicverse/external/nocd/metrics 2026-05-19T08:15:14,553 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-05-19T08:15:14,555 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-05-19T08:15:14,557 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-05-19T08:15:14,560 creating build/lib/omicverse/external/nocd/nn 2026-05-19T08:15:14,561 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-05-19T08:15:14,563 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-05-19T08:15:14,565 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-05-19T08:15:14,567 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-05-19T08:15:14,571 running egg_info 2026-05-19T08:15:14,582 writing omicverse.egg-info/PKG-INFO 2026-05-19T08:15:14,601 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-05-19T08:15:14,604 writing entry points to omicverse.egg-info/entry_points.txt 2026-05-19T08:15:14,614 writing requirements to omicverse.egg-info/requires.txt 2026-05-19T08:15:14,615 writing top-level names to omicverse.egg-info/top_level.txt 2026-05-19T08:15:14,821 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-05-19T08:15:14,890 reading manifest template 'MANIFEST.in' 2026-05-19T08:15:15,942 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-05-19T08:15:17,405 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-05-19T08:15:17,917 warning: no files found matching '*.yml' under directory 'omicverse' 2026-05-19T08:15:22,537 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-05-19T08:15:23,034 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-05-19T08:15:23,510 warning: no files found matching '*.svg' under directory 'omicverse' 2026-05-19T08:15:23,994 warning: no files found matching '*.ico' under directory 'omicverse' 2026-05-19T08:15:24,483 warning: no files found matching '*.db' under directory 'omicverse' 2026-05-19T08:15:24,945 warning: no files found matching '*.npz' under directory 'omicverse' 2026-05-19T08:15:25,437 warning: no files found matching '*.gz' under directory 'omicverse' 2026-05-19T08:15:25,440 no previously-included directories found matching '.git' 2026-05-19T08:15:25,444 no previously-included directories found matching '.github' 2026-05-19T08:15:25,448 no previously-included directories found matching '.claude' 2026-05-19T08:15:25,451 no previously-included directories found matching '.pytest_cache' 2026-05-19T08:15:25,455 no previously-included directories found matching '.ruff_cache' 2026-05-19T08:15:25,458 no previously-included directories found matching '.vscode' 2026-05-19T08:15:25,462 no previously-included directories found matching 'docs' 2026-05-19T08:15:25,465 no previously-included directories found matching 'tests' 2026-05-19T08:15:25,469 no previously-included directories found matching 'OvIntelligence' 2026-05-19T08:15:25,473 no previously-included directories found matching 'READMEM' 2026-05-19T08:15:25,476 no previously-included directories found matching 'omicverse_guide' 2026-05-19T08:15:25,480 no previously-included directories found matching 'omicverse_web' 2026-05-19T08:15:25,484 no previously-included directories found matching 'tmp' 2026-05-19T08:15:25,487 no previously-included directories found matching 'tmp_omicverse' 2026-05-19T08:15:25,491 no previously-included directories found matching 'Skill_Seekers' 2026-05-19T08:15:25,498 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-05-19T08:15:25,506 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-05-19T08:15:25,513 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-05-19T08:15:25,514 adding license file 'LICENSE' 2026-05-19T08:15:25,592 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-05-19T08:15:25,693 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-05-19T08:15:25,695 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-05-19T08:15:25,698 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-05-19T08:15:25,700 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-05-19T08:15:25,703 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-05-19T08:15:25,705 creating build/lib/omicverse/bulk/.ipynb_checkpoints 2026-05-19T08:15:25,706 copying omicverse/bulk/.ipynb_checkpoints/_wgcna-checkpoint.py -> build/lib/omicverse/bulk/.ipynb_checkpoints 2026-05-19T08:15:25,709 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-05-19T08:15:25,712 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-05-19T08:15:25,715 copying omicverse/datasets/data_files/README.md -> build/lib/omicverse/datasets/data_files 2026-05-19T08:15:25,717 copying omicverse/datasets/data_files/features_model_training_17.csv -> build/lib/omicverse/datasets/data_files 2026-05-19T08:15:25,723 copying omicverse/datasets/data_files/human_alias_list.txt -> build/lib/omicverse/datasets/data_files 2026-05-19T08:15:25,725 copying omicverse/datasets/data_files/mart_export.txt -> build/lib/omicverse/datasets/data_files 2026-05-19T08:15:25,799 creating build/lib/omicverse/datasets/data_files/TF 2026-05-19T08:15:25,800 copying omicverse/datasets/data_files/TF/allTFs_human.txt -> build/lib/omicverse/datasets/data_files/TF 2026-05-19T08:15:25,803 copying omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/datasets/data_files/TF 2026-05-19T08:15:25,805 copying omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/datasets/data_files/TF 2026-05-19T08:15:25,816 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/datasets/data_files/TF 2026-05-19T08:15:25,831 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/datasets/data_files/TF 2026-05-19T08:15:25,843 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-05-19T08:15:25,846 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-05-19T08:15:25,848 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-05-19T08:15:25,851 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-05-19T08:15:25,853 creating build/lib/omicverse/single/templates/img 2026-05-19T08:15:25,854 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-05-19T08:15:25,856 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-05-19T08:15:25,859 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-05-19T08:15:25,862 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-05-19T08:15:25,865 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-05-19T08:15:25,871 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-05-19T08:15:25,873 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-05-19T08:15:25,876 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-05-19T08:15:25,878 creating build/lib/omicverse/llm/scfoundation/models 2026-05-19T08:15:25,879 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-05-19T08:15:25,881 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-05-19T08:15:25,904 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-05-19T08:15:25,920 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-05-19T08:15:25,922 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-05-19T08:15:25,925 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-05-19T08:15:25,927 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-05-19T08:15:25,929 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-05-19T08:15:25,932 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-05-19T08:15:25,934 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-05-19T08:15:25,937 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-05-19T08:15:25,941 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-05-19T08:15:25,942 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-05-19T08:15:25,946 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-05-19T08:15:25,950 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-05-19T08:15:25,954 creating build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,955 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,957 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,960 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,962 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,965 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,968 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,970 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,973 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,976 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,978 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,981 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,983 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-05-19T08:15:25,986 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:25,991 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-05-19T08:15:25,992 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-05-19T08:15:26,074 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-05-19T08:15:26,078 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-05-19T08:15:26,085 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-05-19T08:15:26,086 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-05-19T08:15:26,094 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-05-19T08:15:26,102 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-05-19T08:15:26,109 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-05-19T08:15:26,110 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-05-19T08:15:26,128 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-05-19T08:15:26,144 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-05-19T08:15:26,161 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-05-19T08:15:26,626 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-05-19T08:15:26,651 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-05-19T08:15:26,654 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-05-19T08:15:26,656 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-05-19T08:15:26,659 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-05-19T08:15:26,768 installing to build/bdist.linux-armv7l/wheel 2026-05-19T08:15:26,769 running install 2026-05-19T08:15:26,792 running install_lib 2026-05-19T08:15:26,798 creating build/bdist.linux-armv7l/wheel 2026-05-19T08:15:26,800 creating build/bdist.linux-armv7l/wheel/omicverse 2026-05-19T08:15:26,802 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-05-19T08:15:26,804 copying build/lib/omicverse/utils/_memory.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,806 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,807 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,809 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,811 copying build/lib/omicverse/utils/agent_backend_dashscope.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,813 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,815 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,818 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,821 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,823 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,825 copying build/lib/omicverse/utils/_sample_metadata_alignment.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,828 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,830 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,833 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-05-19T08:15:26,834 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-05-19T08:15:26,836 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-05-19T08:15:26,838 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-05-19T08:15:26,840 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-05-19T08:15:26,843 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-05-19T08:15:26,846 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-05-19T08:15:26,848 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-05-19T08:15:26,850 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-05-19T08:15:26,853 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-05-19T08:15:26,855 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-05-19T08:15:26,857 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,859 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,862 creating build/bdist.linux-armv7l/wheel/omicverse/utils/biocontext 2026-05-19T08:15:26,863 copying build/lib/omicverse/utils/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-05-19T08:15:26,865 copying build/lib/omicverse/utils/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-05-19T08:15:26,867 copying build/lib/omicverse/utils/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-05-19T08:15:26,869 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,872 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,875 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,876 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,879 copying build/lib/omicverse/utils/agent_backend_gemini.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,882 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,885 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,887 copying build/lib/omicverse/utils/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,888 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,891 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,893 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,895 copying build/lib/omicverse/utils/agent_backend_streaming.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,897 copying build/lib/omicverse/utils/_gene_id_conversion.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,901 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-05-19T08:15:26,902 copying build/lib/omicverse/utils/ovagent/session_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,905 copying build/lib/omicverse/utils/ovagent/tool_runtime_workspace.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,908 copying build/lib/omicverse/utils/ovagent/tool_runtime_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,911 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,913 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,915 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,917 copying build/lib/omicverse/utils/ovagent/prompt_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,920 copying build/lib/omicverse/utils/ovagent/turn_followup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,922 copying build/lib/omicverse/utils/ovagent/tool_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,925 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,927 copying build/lib/omicverse/utils/ovagent/analysis_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,929 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,931 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,934 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,936 copying build/lib/omicverse/utils/ovagent/tool_runtime_exec.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,939 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,941 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,944 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,947 copying build/lib/omicverse/utils/ovagent/permission_policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,949 copying build/lib/omicverse/utils/ovagent/event_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,951 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,954 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,956 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,958 copying build/lib/omicverse/utils/ovagent/context_budget.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,960 copying build/lib/omicverse/utils/ovagent/analysis_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,963 copying build/lib/omicverse/utils/ovagent/tool_runtime_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,965 copying build/lib/omicverse/utils/ovagent/analysis_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,967 copying build/lib/omicverse/utils/ovagent/codegen_tool_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,969 copying build/lib/omicverse/utils/ovagent/turn_artifacts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,971 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,973 copying build/lib/omicverse/utils/ovagent/tool_scheduler.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,975 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,978 copying build/lib/omicverse/utils/ovagent/repair_loop.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-05-19T08:15:26,980 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,982 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,985 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:26,988 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-05-19T08:15:26,989 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-05-19T08:15:26,991 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-05-19T08:15:26,994 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-05-19T08:15:26,996 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-05-19T08:15:26,998 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-05-19T08:15:27,000 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-05-19T08:15:27,002 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-05-19T08:15:27,004 copying build/lib/omicverse/utils/agent_backend_openai.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,008 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-05-19T08:15:27,009 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,012 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,014 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,016 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,019 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,021 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,023 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,026 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,028 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,031 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,033 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,035 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,038 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-05-19T08:15:27,040 copying build/lib/omicverse/utils/_metabolights.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,043 copying build/lib/omicverse/utils/_ovagent_lookup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,045 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,048 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,051 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,054 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,056 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,058 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,061 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,062 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,064 copying build/lib/omicverse/utils/_ovagent_paths.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,066 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,068 copying build/lib/omicverse/utils/agent_backend_anthropic.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,070 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,072 copying build/lib/omicverse/utils/agent_backend_common.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-05-19T08:15:27,075 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-05-19T08:15:27,076 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,079 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,081 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,084 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,086 copying build/lib/omicverse/space/_tissue_zones.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,088 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,090 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,092 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,095 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,097 copying build/lib/omicverse/space/_cellcharter.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,099 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,101 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,104 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,107 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,109 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,111 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-05-19T08:15:27,115 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-05-19T08:15:27,116 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-05-19T08:15:27,118 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-05-19T08:15:27,120 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-05-19T08:15:27,122 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-05-19T08:15:27,124 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-05-19T08:15:27,126 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-05-19T08:15:27,128 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-05-19T08:15:27,131 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-05-19T08:15:27,132 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-05-19T08:15:27,134 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-05-19T08:15:27,136 copying build/lib/omicverse/_optional.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-05-19T08:15:27,138 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-05-19T08:15:27,141 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-05-19T08:15:27,142 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,144 copying build/lib/omicverse/alignment/phylogeny.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,146 copying build/lib/omicverse/alignment/_db.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,149 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,151 copying build/lib/omicverse/alignment/dada2.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,153 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,155 copying build/lib/omicverse/alignment/fasttree.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,157 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,160 copying build/lib/omicverse/alignment/vsearch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,163 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,165 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,167 copying build/lib/omicverse/alignment/cutadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,169 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,171 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,173 copying build/lib/omicverse/alignment/mafft.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,175 copying build/lib/omicverse/alignment/amplicon_16s.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,178 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-05-19T08:15:27,181 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-05-19T08:15:27,182 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-05-19T08:15:27,185 copying build/lib/omicverse/_oom_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-05-19T08:15:27,187 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-05-19T08:15:27,190 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-05-19T08:15:27,191 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,193 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,196 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-05-19T08:15:27,197 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-05-19T08:15:27,200 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-05-19T08:15:27,202 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,205 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-05-19T08:15:27,206 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-05-19T08:15:27,208 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-05-19T08:15:27,210 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-05-19T08:15:27,212 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,214 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,216 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,218 copying build/lib/omicverse/jarvis/gemini_cli_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,221 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,224 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,226 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,228 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,230 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,233 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,235 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,239 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-05-19T08:15:27,240 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-05-19T08:15:27,243 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-05-19T08:15:27,246 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-05-19T08:15:27,249 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-05-19T08:15:27,252 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-05-19T08:15:27,255 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-05-19T08:15:27,257 copying build/lib/omicverse/jarvis/channels/channel_core.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-05-19T08:15:27,259 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-05-19T08:15:27,262 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,265 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-05-19T08:15:27,266 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-05-19T08:15:27,268 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-05-19T08:15:27,270 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-05-19T08:15:27,272 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-05-19T08:15:27,274 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-05-19T08:15:27,276 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-05-19T08:15:27,278 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-05-19T08:15:27,280 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,282 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,284 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-05-19T08:15:27,287 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-05-19T08:15:27,288 copying build/lib/omicverse/pp/_doubletfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,291 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-05-19T08:15:27,292 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-05-19T08:15:27,295 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-05-19T08:15:27,297 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-05-19T08:15:27,300 copying build/lib/omicverse/pp/_champ.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,303 copying build/lib/omicverse/pp/_scdblfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,305 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,308 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,311 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,314 copying build/lib/omicverse/pp/_tsne_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,317 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,319 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,322 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,327 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,330 copying build/lib/omicverse/pp/_leiden_gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,333 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,336 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,339 copying build/lib/omicverse/pp/_gpu_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,342 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,344 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,347 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,350 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,353 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,356 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,360 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,365 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,368 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,371 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,373 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,378 creating build/bdist.linux-armv7l/wheel/omicverse/pp/_scrublet_backend 2026-05-19T08:15:27,379 copying build/lib/omicverse/pp/_scrublet_backend/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-05-19T08:15:27,382 copying build/lib/omicverse/pp/_scrublet_backend/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-05-19T08:15:27,385 copying build/lib/omicverse/pp/_scrublet_backend/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-05-19T08:15:27,387 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-05-19T08:15:27,391 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-05-19T08:15:27,392 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,396 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/.ipynb_checkpoints 2026-05-19T08:15:27,397 copying build/lib/omicverse/bulk/.ipynb_checkpoints/_wgcna-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/.ipynb_checkpoints 2026-05-19T08:15:27,400 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,403 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,405 copying build/lib/omicverse/bulk/_wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,408 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,411 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,415 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,418 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-05-19T08:15:27,420 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-05-19T08:15:27,422 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,425 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,428 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,444 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,446 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-05-19T08:15:27,450 creating build/bdist.linux-armv7l/wheel/omicverse/report 2026-05-19T08:15:27,451 copying build/lib/omicverse/report/_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-05-19T08:15:27,454 copying build/lib/omicverse/report/_plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-05-19T08:15:27,456 copying build/lib/omicverse/report/_provenance.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-05-19T08:15:27,460 copying build/lib/omicverse/report/_html.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-05-19T08:15:27,462 copying build/lib/omicverse/report/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-05-19T08:15:27,465 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-05-19T08:15:27,467 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-05-19T08:15:27,470 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files 2026-05-19T08:15:27,472 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files/TF 2026-05-19T08:15:27,473 copying build/lib/omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-05-19T08:15:27,487 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-05-19T08:15:27,507 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-05-19T08:15:27,518 copying build/lib/omicverse/datasets/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-05-19T08:15:27,520 copying build/lib/omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-05-19T08:15:27,522 copying build/lib/omicverse/datasets/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-05-19T08:15:27,524 copying build/lib/omicverse/datasets/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-05-19T08:15:27,597 copying build/lib/omicverse/datasets/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-05-19T08:15:27,599 copying build/lib/omicverse/datasets/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-05-19T08:15:27,601 copying build/lib/omicverse/datasets/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-05-19T08:15:27,606 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-05-19T08:15:27,609 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-05-19T08:15:27,612 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-05-19T08:15:27,613 copying build/lib/omicverse/pl/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,615 copying build/lib/omicverse/pl/_scatterplot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,619 copying build/lib/omicverse/pl/_plot1cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,621 copying build/lib/omicverse/pl/_trajectory.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,624 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,630 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,632 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,636 copying build/lib/omicverse/pl/_venn_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,638 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,641 copying build/lib/omicverse/pl/_dynamic_trends.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,644 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,647 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,658 copying build/lib/omicverse/pl/_plot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,663 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,665 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,669 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,672 copying build/lib/omicverse/pl/_branch_streamplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,675 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,678 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,682 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,685 copying build/lib/omicverse/pl/_scanpy_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,688 copying build/lib/omicverse/pl/_cnv.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,691 copying build/lib/omicverse/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,701 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,706 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,709 copying build/lib/omicverse/pl/_heatmap_marsilea.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,713 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,716 copying build/lib/omicverse/pl/_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,718 copying build/lib/omicverse/pl/_perturbation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,721 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,723 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,726 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,730 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,733 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-05-19T08:15:27,736 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-05-19T08:15:27,737 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-05-19T08:15:27,740 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-05-19T08:15:27,742 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-05-19T08:15:27,744 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-05-19T08:15:27,747 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-05-19T08:15:27,749 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-05-19T08:15:27,752 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-05-19T08:15:27,755 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-05-19T08:15:27,757 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-05-19T08:15:27,760 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-05-19T08:15:27,763 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-05-19T08:15:27,764 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,766 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,769 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,771 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,773 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,775 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,778 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,781 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,783 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,785 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,788 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,792 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,793 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-05-19T08:15:27,795 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-05-19T08:15:27,796 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-05-19T08:15:27,799 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-05-19T08:15:27,801 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-05-19T08:15:27,803 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-05-19T08:15:27,805 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-05-19T08:15:27,808 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-05-19T08:15:27,809 copying build/lib/omicverse/single/_liana.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,812 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,814 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,817 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,819 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,825 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,827 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,830 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-05-19T08:15:27,832 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-05-19T08:15:27,834 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-05-19T08:15:27,836 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-05-19T08:15:27,839 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-05-19T08:15:27,841 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-05-19T08:15:27,843 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-05-19T08:15:27,846 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-05-19T08:15:27,847 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-05-19T08:15:27,849 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-05-19T08:15:27,852 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-05-19T08:15:27,855 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-05-19T08:15:27,859 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,861 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,864 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,867 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,870 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,872 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,875 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,879 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,883 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,885 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,888 copying build/lib/omicverse/single/_comm.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,890 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,893 copying build/lib/omicverse/single/_monocle.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,896 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,899 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,901 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,904 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,907 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,914 copying build/lib/omicverse/single/_cnv.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,916 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,919 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,922 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,924 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,927 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,930 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,933 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,937 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,939 copying build/lib/omicverse/single/_autoresolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,942 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,944 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,947 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,950 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,952 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,954 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,957 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,959 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,961 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,964 copying build/lib/omicverse/single/_nmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,967 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,969 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,972 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,975 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,978 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,980 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,983 copying build/lib/omicverse/single/_dynamic_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-05-19T08:15:27,987 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-05-19T08:15:27,988 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-05-19T08:15:27,989 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-05-19T08:15:27,992 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-05-19T08:15:27,994 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-05-19T08:15:27,996 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-05-19T08:15:27,997 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-05-19T08:15:28,000 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-05-19T08:15:28,001 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-05-19T08:15:28,003 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-05-19T08:15:28,005 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-05-19T08:15:28,007 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-05-19T08:15:28,009 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-05-19T08:15:28,011 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-05-19T08:15:28,013 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-05-19T08:15:28,016 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-05-19T08:15:28,017 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-05-19T08:15:28,019 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-05-19T08:15:28,020 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-05-19T08:15:28,023 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-05-19T08:15:28,025 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-05-19T08:15:28,027 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-05-19T08:15:28,028 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-05-19T08:15:28,030 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-05-19T08:15:28,032 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-05-19T08:15:28,033 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-05-19T08:15:28,035 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-05-19T08:15:28,037 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-05-19T08:15:28,038 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-05-19T08:15:28,040 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-05-19T08:15:28,042 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-05-19T08:15:28,044 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-05-19T08:15:28,045 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-05-19T08:15:28,047 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-05-19T08:15:28,049 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-05-19T08:15:28,051 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-05-19T08:15:28,054 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-05-19T08:15:28,056 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-05-19T08:15:28,059 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-05-19T08:15:28,061 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-05-19T08:15:28,063 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-05-19T08:15:28,065 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-05-19T08:15:28,067 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-05-19T08:15:28,069 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-05-19T08:15:28,071 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,073 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,076 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-05-19T08:15:28,077 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-05-19T08:15:28,080 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:28,081 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:28,083 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:28,086 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:28,088 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:28,090 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:28,092 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:28,094 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-05-19T08:15:28,096 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-05-19T08:15:28,098 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-05-19T08:15:28,100 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-05-19T08:15:28,103 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-05-19T08:15:28,104 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-05-19T08:15:28,106 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-05-19T08:15:28,112 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-05-19T08:15:28,115 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-05-19T08:15:28,117 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-05-19T08:15:28,119 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-05-19T08:15:28,121 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-05-19T08:15:28,122 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-05-19T08:15:28,124 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-05-19T08:15:28,127 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-05-19T08:15:28,128 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-05-19T08:15:28,130 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-05-19T08:15:28,132 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-05-19T08:15:28,134 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-05-19T08:15:28,137 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-05-19T08:15:28,140 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-05-19T08:15:28,141 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-05-19T08:15:28,143 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-05-19T08:15:28,145 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-05-19T08:15:28,147 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-05-19T08:15:28,149 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-05-19T08:15:28,151 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-05-19T08:15:28,152 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-05-19T08:15:28,154 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-05-19T08:15:28,156 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-05-19T08:15:28,159 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-05-19T08:15:28,162 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-05-19T08:15:28,164 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-05-19T08:15:28,166 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-05-19T08:15:28,167 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-05-19T08:15:28,184 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-05-19T08:15:28,186 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-05-19T08:15:28,215 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-05-19T08:15:28,217 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-05-19T08:15:28,219 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-05-19T08:15:28,222 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-05-19T08:15:28,225 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-05-19T08:15:28,227 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,231 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,235 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,237 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,242 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,249 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,252 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,257 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,264 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,267 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-05-19T08:15:28,269 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-05-19T08:15:28,271 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-05-19T08:15:28,273 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-05-19T08:15:28,275 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-05-19T08:15:28,277 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-05-19T08:15:28,281 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-05-19T08:15:28,283 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-05-19T08:15:28,284 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-05-19T08:15:28,287 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-05-19T08:15:28,290 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-05-19T08:15:28,292 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-05-19T08:15:28,295 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-05-19T08:15:28,298 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-05-19T08:15:28,300 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-05-19T08:15:28,302 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-05-19T08:15:28,304 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-05-19T08:15:28,307 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-05-19T08:15:28,309 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-05-19T08:15:28,311 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-05-19T08:15:28,313 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-05-19T08:15:28,314 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-05-19T08:15:28,317 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-05-19T08:15:28,319 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:28,320 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:28,323 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:28,324 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:28,326 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:28,329 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-05-19T08:15:28,331 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-05-19T08:15:28,333 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-05-19T08:15:28,335 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-05-19T08:15:28,337 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-05-19T08:15:28,339 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-05-19T08:15:28,340 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-05-19T08:15:28,342 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-05-19T08:15:28,344 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-05-19T08:15:28,346 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-05-19T08:15:28,347 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-05-19T08:15:28,350 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-05-19T08:15:28,352 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-05-19T08:15:28,353 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-05-19T08:15:28,355 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-05-19T08:15:28,356 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-05-19T08:15:28,358 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-05-19T08:15:28,360 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-05-19T08:15:28,362 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-05-19T08:15:28,363 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-05-19T08:15:28,366 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-05-19T08:15:28,368 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-05-19T08:15:28,370 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-05-19T08:15:28,371 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-05-19T08:15:28,373 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-05-19T08:15:28,374 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-05-19T08:15:28,377 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-05-19T08:15:28,378 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,381 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,384 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-05-19T08:15:28,385 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-05-19T08:15:28,388 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-05-19T08:15:28,390 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-05-19T08:15:28,393 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-05-19T08:15:28,395 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-05-19T08:15:28,396 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-05-19T08:15:28,398 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-05-19T08:15:28,400 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,403 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,406 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,408 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,410 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,413 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,416 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,418 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,422 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,424 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-05-19T08:15:28,429 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-05-19T08:15:28,431 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-05-19T08:15:28,432 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-05-19T08:15:28,435 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-05-19T08:15:28,437 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-05-19T08:15:28,439 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-05-19T08:15:28,441 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-05-19T08:15:28,443 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-05-19T08:15:28,446 copying build/lib/omicverse/io/spatial/_atera.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-05-19T08:15:28,448 copying build/lib/omicverse/io/spatial/_xenium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-05-19T08:15:28,451 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-05-19T08:15:28,453 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-05-19T08:15:28,456 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-05-19T08:15:28,457 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-05-19T08:15:28,459 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-05-19T08:15:28,460 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-05-19T08:15:28,463 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-05-19T08:15:28,465 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-05-19T08:15:28,466 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-05-19T08:15:28,469 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-05-19T08:15:28,470 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-05-19T08:15:28,473 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-05-19T08:15:28,475 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-05-19T08:15:28,477 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-05-19T08:15:28,478 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-05-19T08:15:28,479 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-05-19T08:15:28,481 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-05-19T08:15:28,484 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-05-19T08:15:28,486 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-05-19T08:15:28,487 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-05-19T08:15:28,489 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-05-19T08:15:28,491 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-05-19T08:15:28,493 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-05-19T08:15:28,495 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-05-19T08:15:28,497 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-05-19T08:15:28,499 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-05-19T08:15:28,501 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-05-19T08:15:28,504 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-05-19T08:15:28,505 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-05-19T08:15:28,507 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-05-19T08:15:28,509 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-05-19T08:15:28,512 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-05-19T08:15:28,513 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-05-19T08:15:28,517 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-05-19T08:15:28,517 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-05-19T08:15:28,520 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-05-19T08:15:28,522 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-05-19T08:15:28,525 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-05-19T08:15:28,526 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-05-19T08:15:28,528 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-05-19T08:15:28,531 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-05-19T08:15:28,533 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-05-19T08:15:28,536 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-05-19T08:15:28,539 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-05-19T08:15:28,540 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-05-19T08:15:28,543 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-05-19T08:15:28,545 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-05-19T08:15:28,547 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-05-19T08:15:28,548 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-05-19T08:15:28,551 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-05-19T08:15:28,553 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-05-19T08:15:28,555 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-05-19T08:15:28,558 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-05-19T08:15:28,559 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-05-19T08:15:28,561 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-05-19T08:15:28,563 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-05-19T08:15:28,564 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-05-19T08:15:28,567 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-05-19T08:15:28,569 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-05-19T08:15:28,571 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-05-19T08:15:28,573 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-05-19T08:15:28,575 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-05-19T08:15:28,577 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-05-19T08:15:28,578 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-05-19T08:15:28,580 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-05-19T08:15:28,583 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-05-19T08:15:28,585 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-05-19T08:15:28,586 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-05-19T08:15:28,588 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-05-19T08:15:28,591 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-05-19T08:15:28,594 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-05-19T08:15:28,595 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-05-19T08:15:28,597 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-05-19T08:15:28,599 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-05-19T08:15:28,601 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-05-19T08:15:28,602 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-05-19T08:15:28,604 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-05-19T08:15:28,605 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-05-19T08:15:28,608 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-05-19T08:15:28,612 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-05-19T08:15:28,613 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-05-19T08:15:28,617 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-05-19T08:15:28,620 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-05-19T08:15:28,625 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-05-19T08:15:28,627 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-05-19T08:15:28,630 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-05-19T08:15:28,633 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-05-19T08:15:28,634 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-05-19T08:15:28,638 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-05-19T08:15:28,641 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-05-19T08:15:28,644 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-05-19T08:15:28,645 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-05-19T08:15:28,648 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-05-19T08:15:28,651 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-05-19T08:15:28,653 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-05-19T08:15:28,655 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-05-19T08:15:28,658 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-05-19T08:15:28,659 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-05-19T08:15:28,661 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-05-19T08:15:28,664 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-05-19T08:15:28,667 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-05-19T08:15:28,668 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-05-19T08:15:28,670 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-05-19T08:15:28,673 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-05-19T08:15:28,674 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-05-19T08:15:28,677 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-05-19T08:15:28,680 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-05-19T08:15:28,682 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-05-19T08:15:28,683 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-05-19T08:15:28,686 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-05-19T08:15:28,688 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-05-19T08:15:28,689 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-05-19T08:15:28,692 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-05-19T08:15:28,694 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-05-19T08:15:28,696 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-05-19T08:15:28,697 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-05-19T08:15:28,699 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-05-19T08:15:28,700 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-05-19T08:15:28,703 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-05-19T08:15:28,704 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-05-19T08:15:28,706 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-05-19T08:15:28,708 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-05-19T08:15:28,711 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv 2026-05-19T08:15:28,712 copying build/lib/omicverse/external/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-05-19T08:15:28,714 copying build/lib/omicverse/external/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-05-19T08:15:28,717 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/hub 2026-05-19T08:15:28,718 copying build/lib/omicverse/external/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-05-19T08:15:28,720 copying build/lib/omicverse/external/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-05-19T08:15:28,722 copying build/lib/omicverse/external/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-05-19T08:15:28,723 copying build/lib/omicverse/external/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-05-19T08:15:28,726 copying build/lib/omicverse/external/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-05-19T08:15:28,728 copying build/lib/omicverse/external/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-05-19T08:15:28,731 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/algorithms 2026-05-19T08:15:28,732 copying build/lib/omicverse/external/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,734 copying build/lib/omicverse/external/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,736 copying build/lib/omicverse/external/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,738 copying build/lib/omicverse/external/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,740 copying build/lib/omicverse/external/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,742 copying build/lib/omicverse/external/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,744 copying build/lib/omicverse/external/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,746 copying build/lib/omicverse/external/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,748 copying build/lib/omicverse/external/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,750 copying build/lib/omicverse/external/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,752 copying build/lib/omicverse/external/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,755 copying build/lib/omicverse/external/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-05-19T08:15:28,756 copying build/lib/omicverse/external/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-05-19T08:15:28,758 copying build/lib/omicverse/external/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-05-19T08:15:28,761 copying build/lib/omicverse/external/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-05-19T08:15:28,763 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyensembl 2026-05-19T08:15:28,764 copying build/lib/omicverse/external/pyensembl/species.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,767 copying build/lib/omicverse/external/pyensembl/exon.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,769 copying build/lib/omicverse/external/pyensembl/locus.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,771 copying build/lib/omicverse/external/pyensembl/normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,773 copying build/lib/omicverse/external/pyensembl/search.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,775 copying build/lib/omicverse/external/pyensembl/reference_name.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,777 copying build/lib/omicverse/external/pyensembl/serializable.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,779 copying build/lib/omicverse/external/pyensembl/download_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,781 copying build/lib/omicverse/external/pyensembl/ensembl_release.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,784 copying build/lib/omicverse/external/pyensembl/sequence_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,786 copying build/lib/omicverse/external/pyensembl/fasta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,788 copying build/lib/omicverse/external/pyensembl/ensembl_url_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,790 copying build/lib/omicverse/external/pyensembl/shell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,792 copying build/lib/omicverse/external/pyensembl/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,794 copying build/lib/omicverse/external/pyensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,796 copying build/lib/omicverse/external/pyensembl/common.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,798 copying build/lib/omicverse/external/pyensembl/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,800 copying build/lib/omicverse/external/pyensembl/transcript.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,802 copying build/lib/omicverse/external/pyensembl/ensembl_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,804 copying build/lib/omicverse/external/pyensembl/locus_with_genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,806 copying build/lib/omicverse/external/pyensembl/genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,809 copying build/lib/omicverse/external/pyensembl/gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-05-19T08:15:28,811 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-05-19T08:15:28,812 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-05-19T08:15:28,815 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-05-19T08:15:28,816 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-05-19T08:15:28,819 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-05-19T08:15:28,821 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-05-19T08:15:28,822 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-05-19T08:15:28,830 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-05-19T08:15:28,832 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-05-19T08:15:28,834 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-05-19T08:15:28,836 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-05-19T08:15:28,838 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-05-19T08:15:28,841 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-05-19T08:15:28,843 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-05-19T08:15:28,844 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-05-19T08:15:28,847 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-05-19T08:15:28,848 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-05-19T08:15:28,850 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-05-19T08:15:28,852 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-05-19T08:15:28,853 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-05-19T08:15:28,855 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-05-19T08:15:28,858 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-05-19T08:15:28,860 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-05-19T08:15:28,862 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-05-19T08:15:28,865 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-05-19T08:15:28,866 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,868 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,871 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,873 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,875 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,876 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,879 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,881 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,884 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,888 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,890 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-05-19T08:15:28,892 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-05-19T08:15:28,893 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-05-19T08:15:28,896 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-05-19T08:15:28,898 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-05-19T08:15:28,901 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-05-19T08:15:28,904 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-05-19T08:15:28,907 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-05-19T08:15:28,909 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-05-19T08:15:28,910 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-05-19T08:15:28,913 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-05-19T08:15:28,916 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-05-19T08:15:28,917 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,920 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,922 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,924 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,926 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,929 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,930 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,932 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,934 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,936 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,938 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,941 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,943 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-05-19T08:15:28,945 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-05-19T08:15:28,946 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-05-19T08:15:28,948 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-05-19T08:15:28,950 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-05-19T08:15:28,953 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-05-19T08:15:28,955 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-05-19T08:15:28,956 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-05-19T08:15:28,959 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-05-19T08:15:28,961 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-05-19T08:15:28,962 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-05-19T08:15:28,965 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-05-19T08:15:28,967 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-05-19T08:15:28,968 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-05-19T08:15:28,971 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-05-19T08:15:28,975 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-05-19T08:15:28,976 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-05-19T08:15:28,978 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-05-19T08:15:28,981 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-05-19T08:15:28,983 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-05-19T08:15:28,986 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-05-19T08:15:28,988 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-05-19T08:15:28,991 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-05-19T08:15:28,993 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-05-19T08:15:28,995 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-05-19T08:15:28,998 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-05-19T08:15:29,000 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-05-19T08:15:29,001 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-05-19T08:15:29,003 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-05-19T08:15:29,006 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-05-19T08:15:29,009 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-05-19T08:15:29,010 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-05-19T08:15:29,012 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-05-19T08:15:29,015 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-05-19T08:15:29,018 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-05-19T08:15:29,020 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-05-19T08:15:29,024 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-05-19T08:15:29,027 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-05-19T08:15:29,030 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-05-19T08:15:29,031 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-05-19T08:15:29,035 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-05-19T08:15:29,037 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-05-19T08:15:29,040 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-05-19T08:15:29,041 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-05-19T08:15:29,044 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-05-19T08:15:29,047 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-05-19T08:15:29,049 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-05-19T08:15:29,054 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-05-19T08:15:29,057 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-05-19T08:15:29,059 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-05-19T08:15:29,062 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-05-19T08:15:29,066 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-05-19T08:15:29,068 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,070 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,073 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,075 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,078 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,081 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,084 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,087 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,090 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,093 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-05-19T08:15:29,095 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-05-19T08:15:29,098 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-05-19T08:15:29,101 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-05-19T08:15:29,104 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,106 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,108 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,110 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,113 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-05-19T08:15:29,114 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-05-19T08:15:29,116 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-05-19T08:15:29,119 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-05-19T08:15:29,122 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-05-19T08:15:29,124 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-05-19T08:15:29,127 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-05-19T08:15:29,129 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-05-19T08:15:29,132 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-05-19T08:15:29,134 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,136 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,138 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,141 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,144 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-05-19T08:15:29,145 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-05-19T08:15:29,147 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-05-19T08:15:29,149 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-05-19T08:15:29,151 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,154 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,156 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,158 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-05-19T08:15:29,160 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-05-19T08:15:29,161 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-05-19T08:15:29,163 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-05-19T08:15:29,165 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-05-19T08:15:29,167 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-05-19T08:15:29,169 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-05-19T08:15:29,171 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-05-19T08:15:29,173 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,174 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,176 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,178 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,180 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,182 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,185 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,186 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,188 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,190 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,192 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,194 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,196 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,198 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,200 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,202 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,205 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,207 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,209 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-05-19T08:15:29,211 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-05-19T08:15:29,214 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-05-19T08:15:29,215 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-05-19T08:15:29,217 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-05-19T08:15:29,219 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-05-19T08:15:29,221 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-05-19T08:15:29,223 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-05-19T08:15:29,225 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-05-19T08:15:29,227 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-05-19T08:15:29,228 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,231 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,233 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,234 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,237 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,239 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,241 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,243 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,245 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,248 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,250 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,252 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-05-19T08:15:29,254 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-05-19T08:15:29,255 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-05-19T08:15:29,258 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-05-19T08:15:29,260 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-05-19T08:15:29,262 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-05-19T08:15:29,269 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-05-19T08:15:29,272 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-05-19T08:15:29,273 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-05-19T08:15:29,275 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-05-19T08:15:29,276 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-05-19T08:15:29,278 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-05-19T08:15:29,280 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-05-19T08:15:29,282 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-05-19T08:15:29,285 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-05-19T08:15:29,286 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-05-19T08:15:29,288 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-05-19T08:15:29,290 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-05-19T08:15:29,292 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-05-19T08:15:29,294 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-05-19T08:15:29,296 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-05-19T08:15:29,297 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-05-19T08:15:29,300 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-05-19T08:15:29,301 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-05-19T08:15:29,303 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-05-19T08:15:29,305 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-05-19T08:15:29,306 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-05-19T08:15:29,308 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-05-19T08:15:29,311 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-05-19T08:15:29,313 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-05-19T08:15:29,315 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-05-19T08:15:29,317 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-05-19T08:15:29,318 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-05-19T08:15:29,320 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-05-19T08:15:29,322 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-05-19T08:15:29,325 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-05-19T08:15:29,327 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-05-19T08:15:29,329 copying build/lib/omicverse/external/umap_pytorch/fuzzy_gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-05-19T08:15:29,332 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-05-19T08:15:29,333 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-05-19T08:15:29,339 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-05-19T08:15:29,345 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-05-19T08:15:29,350 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-05-19T08:15:29,354 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-05-19T08:15:29,356 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-05-19T08:15:29,358 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-05-19T08:15:29,361 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-05-19T08:15:29,362 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-05-19T08:15:29,364 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-05-19T08:15:29,366 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-05-19T08:15:29,368 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-05-19T08:15:29,370 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-05-19T08:15:29,372 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-05-19T08:15:29,374 copying build/lib/omicverse/external/torch_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-05-19T08:15:29,377 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-05-19T08:15:29,378 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-05-19T08:15:29,380 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-05-19T08:15:29,383 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-05-19T08:15:29,385 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-05-19T08:15:29,387 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-05-19T08:15:29,388 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-05-19T08:15:29,391 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-05-19T08:15:29,393 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-05-19T08:15:29,395 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-05-19T08:15:29,397 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-05-19T08:15:29,400 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-05-19T08:15:29,404 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-05-19T08:15:29,405 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,408 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,411 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,414 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,417 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,419 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,422 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,425 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,427 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,430 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,432 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,435 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,439 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-05-19T08:15:29,440 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-05-19T08:15:29,443 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-05-19T08:15:29,445 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-05-19T08:15:29,447 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-05-19T08:15:29,450 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,453 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,455 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,458 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,461 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,464 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,467 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,469 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,472 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,475 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-05-19T08:15:29,477 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-05-19T08:15:29,479 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-05-19T08:15:29,482 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-05-19T08:15:29,485 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-05-19T08:15:29,487 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-05-19T08:15:29,489 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-05-19T08:15:29,492 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-05-19T08:15:29,495 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-05-19T08:15:29,496 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-05-19T08:15:29,499 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-05-19T08:15:29,502 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-05-19T08:15:29,504 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-05-19T08:15:29,507 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-05-19T08:15:29,510 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-05-19T08:15:29,512 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-05-19T08:15:29,514 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-05-19T08:15:29,517 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,520 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,523 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-05-19T08:15:29,524 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-05-19T08:15:29,527 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-05-19T08:15:29,530 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-05-19T08:15:29,533 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-05-19T08:15:29,536 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-05-19T08:15:29,539 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-05-19T08:15:29,542 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-05-19T08:15:29,545 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-05-19T08:15:29,547 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-05-19T08:15:29,550 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,552 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,555 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,558 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,560 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,562 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,565 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,568 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,571 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,574 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,577 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-05-19T08:15:29,578 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-05-19T08:15:29,581 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-05-19T08:15:29,583 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-05-19T08:15:29,586 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-05-19T08:15:29,589 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-05-19T08:15:29,591 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-05-19T08:15:29,594 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-05-19T08:15:29,597 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-05-19T08:15:29,598 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,601 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,604 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,607 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,610 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,612 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,615 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,618 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,621 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,623 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,626 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,629 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,632 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,635 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,637 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,640 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,643 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,645 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,648 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,651 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,654 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,656 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-05-19T08:15:29,659 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-05-19T08:15:29,662 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-05-19T08:15:29,664 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-05-19T08:15:29,666 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-05-19T08:15:29,668 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-05-19T08:15:29,671 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-05-19T08:15:29,674 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-05-19T08:15:29,677 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-05-19T08:15:29,680 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-05-19T08:15:29,682 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,684 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,687 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,691 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,694 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,696 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,698 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,702 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,704 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,707 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,710 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,713 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-05-19T08:15:29,716 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-05-19T08:15:29,718 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,720 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,723 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,725 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,727 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,730 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,732 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,735 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,737 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,739 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,742 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-05-19T08:15:29,743 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-05-19T08:15:29,841 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-05-19T08:15:29,845 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-05-19T08:15:29,850 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,853 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,856 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-05-19T08:15:29,859 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,860 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,864 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,867 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,869 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,872 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,880 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,882 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,886 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,889 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,892 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,895 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-05-19T08:15:29,896 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-05-19T08:15:29,898 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:29,900 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:29,902 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:29,905 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:29,907 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:29,910 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-05-19T08:15:29,913 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-05-19T08:15:29,915 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-05-19T08:15:29,917 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-05-19T08:15:29,920 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-05-19T08:15:29,923 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-05-19T08:15:29,925 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-05-19T08:15:29,928 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-05-19T08:15:29,931 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-05-19T08:15:29,933 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-05-19T08:15:29,935 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-05-19T08:15:29,938 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-05-19T08:15:29,941 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-05-19T08:15:29,943 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-05-19T08:15:29,946 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-05-19T08:15:29,948 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-05-19T08:15:29,951 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-05-19T08:15:29,953 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-05-19T08:15:29,956 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-05-19T08:15:29,958 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-05-19T08:15:29,961 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-05-19T08:15:29,964 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-05-19T08:15:29,965 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-05-19T08:15:29,970 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-05-19T08:15:29,973 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-05-19T08:15:29,974 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:29,977 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:29,979 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:29,982 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:29,985 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:29,988 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:29,990 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:29,993 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:29,996 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:29,998 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:30,000 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:30,003 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:30,005 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:30,008 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:30,010 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-05-19T08:15:30,013 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-05-19T08:15:30,015 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-05-19T08:15:30,018 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-05-19T08:15:30,020 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-05-19T08:15:30,023 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-05-19T08:15:30,026 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-05-19T08:15:30,028 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-05-19T08:15:30,030 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-05-19T08:15:30,033 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-05-19T08:15:30,035 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-05-19T08:15:30,037 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-05-19T08:15:30,040 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-05-19T08:15:30,043 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-05-19T08:15:30,044 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-05-19T08:15:30,047 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-05-19T08:15:30,049 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-05-19T08:15:30,051 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-05-19T08:15:30,054 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-05-19T08:15:30,056 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-05-19T08:15:30,058 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-05-19T08:15:30,062 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-05-19T08:15:30,063 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,066 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,068 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,071 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,074 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,077 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,079 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,082 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,084 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,087 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,089 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-05-19T08:15:30,092 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellcharter 2026-05-19T08:15:30,093 copying build/lib/omicverse/external/cellcharter/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-05-19T08:15:30,096 copying build/lib/omicverse/external/cellcharter/_autok.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-05-19T08:15:30,098 copying build/lib/omicverse/external/cellcharter/_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-05-19T08:15:30,100 copying build/lib/omicverse/external/cellcharter/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-05-19T08:15:30,102 copying build/lib/omicverse/external/cellcharter/_aggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-05-19T08:15:30,105 copying build/lib/omicverse/external/cellcharter/_gmm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-05-19T08:15:30,108 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-05-19T08:15:30,110 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-05-19T08:15:30,111 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-05-19T08:15:30,114 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-05-19T08:15:30,117 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-05-19T08:15:30,120 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-05-19T08:15:30,122 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-05-19T08:15:30,123 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-05-19T08:15:30,126 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-05-19T08:15:30,128 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-05-19T08:15:30,131 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-05-19T08:15:30,133 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-05-19T08:15:30,136 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-05-19T08:15:30,137 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-05-19T08:15:30,139 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,140 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,143 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,145 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,147 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,150 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,152 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,154 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,157 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,160 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,162 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,165 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,167 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,169 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,172 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,174 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,176 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,178 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,180 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-05-19T08:15:30,182 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-05-19T08:15:30,184 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-05-19T08:15:30,186 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-05-19T08:15:30,189 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-05-19T08:15:30,191 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,192 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,195 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,197 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,199 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,201 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,203 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,205 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,208 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,210 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,212 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,214 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-05-19T08:15:30,216 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-05-19T08:15:30,219 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-05-19T08:15:30,220 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-05-19T08:15:30,222 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-05-19T08:15:30,224 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-05-19T08:15:30,226 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-05-19T08:15:30,227 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-05-19T08:15:30,230 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-05-19T08:15:30,232 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-05-19T08:15:30,234 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-05-19T08:15:30,237 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-05-19T08:15:30,239 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-05-19T08:15:30,241 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-05-19T08:15:30,242 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-05-19T08:15:30,246 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-05-19T08:15:30,248 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-05-19T08:15:30,250 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-05-19T08:15:30,260 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-05-19T08:15:30,261 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-05-19T08:15:30,285 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-05-19T08:15:30,304 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-05-19T08:15:30,323 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-05-19T08:15:30,329 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-05-19T08:15:30,337 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-05-19T08:15:30,338 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-05-19T08:15:30,341 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-05-19T08:15:30,342 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-05-19T08:15:30,344 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-05-19T08:15:30,346 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-05-19T08:15:30,349 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-05-19T08:15:30,351 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-05-19T08:15:30,353 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-05-19T08:15:30,354 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-05-19T08:15:30,356 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-05-19T08:15:30,358 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-05-19T08:15:30,361 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-05-19T08:15:30,362 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-05-19T08:15:30,364 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-05-19T08:15:30,365 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-05-19T08:15:30,367 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-05-19T08:15:30,369 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-05-19T08:15:30,371 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-05-19T08:15:30,373 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-05-19T08:15:30,375 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-05-19T08:15:30,376 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-05-19T08:15:30,377 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-05-19T08:15:30,379 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-05-19T08:15:30,382 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-05-19T08:15:30,383 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-05-19T08:15:30,386 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-05-19T08:15:30,388 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-05-19T08:15:30,390 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-05-19T08:15:30,391 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-05-19T08:15:31,122 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-05-19T08:15:31,125 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-05-19T08:15:31,151 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-05-19T08:15:31,154 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-05-19T08:15:31,156 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-05-19T08:15:31,159 creating build/bdist.linux-armv7l/wheel/omicverse/external/gtfparse 2026-05-19T08:15:31,161 copying build/lib/omicverse/external/gtfparse/create_missing_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-05-19T08:15:31,164 copying build/lib/omicverse/external/gtfparse/read_gtf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-05-19T08:15:31,166 copying build/lib/omicverse/external/gtfparse/attribute_parsing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-05-19T08:15:31,169 copying build/lib/omicverse/external/gtfparse/parsing_error.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-05-19T08:15:31,171 copying build/lib/omicverse/external/gtfparse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-05-19T08:15:31,174 creating build/bdist.linux-armv7l/wheel/omicverse/external/monocle2_py 2026-05-19T08:15:31,175 copying build/lib/omicverse/external/monocle2_py/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-05-19T08:15:31,179 copying build/lib/omicverse/external/monocle2_py/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-05-19T08:15:31,181 copying build/lib/omicverse/external/monocle2_py/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-05-19T08:15:31,184 copying build/lib/omicverse/external/monocle2_py/clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-05-19T08:15:31,186 copying build/lib/omicverse/external/monocle2_py/differential.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-05-19T08:15:31,189 copying build/lib/omicverse/external/monocle2_py/ddrtree.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-05-19T08:15:31,192 copying build/lib/omicverse/external/monocle2_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-05-19T08:15:31,194 copying build/lib/omicverse/external/monocle2_py/ordering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-05-19T08:15:31,197 copying build/lib/omicverse/external/monocle2_py/dimension_reduction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-05-19T08:15:31,200 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-05-19T08:15:31,201 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-05-19T08:15:31,204 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-05-19T08:15:31,207 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-05-19T08:15:31,210 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-05-19T08:15:31,213 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-05-19T08:15:31,216 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-05-19T08:15:31,219 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-05-19T08:15:31,221 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-05-19T08:15:31,224 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-05-19T08:15:31,226 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-05-19T08:15:31,228 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-05-19T08:15:31,231 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-05-19T08:15:31,233 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-05-19T08:15:31,236 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-05-19T08:15:31,238 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-05-19T08:15:31,241 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-05-19T08:15:31,245 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-05-19T08:15:31,246 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-05-19T08:15:31,249 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-05-19T08:15:31,251 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-05-19T08:15:31,254 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-05-19T08:15:31,256 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-05-19T08:15:31,258 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-05-19T08:15:31,261 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-05-19T08:15:31,263 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-05-19T08:15:31,267 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-05-19T08:15:31,268 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-05-19T08:15:31,271 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-05-19T08:15:31,273 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-05-19T08:15:31,275 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-05-19T08:15:31,278 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-05-19T08:15:31,280 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-05-19T08:15:31,283 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-05-19T08:15:31,284 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-05-19T08:15:31,287 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-05-19T08:15:31,290 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-05-19T08:15:31,292 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-05-19T08:15:31,295 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-05-19T08:15:31,298 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-05-19T08:15:31,301 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-05-19T08:15:31,303 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-05-19T08:15:31,305 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-05-19T08:15:31,308 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-05-19T08:15:31,310 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-05-19T08:15:31,312 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-05-19T08:15:31,315 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-05-19T08:15:31,317 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-05-19T08:15:31,319 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-05-19T08:15:31,323 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-05-19T08:15:31,324 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,327 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,330 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,333 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,337 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,340 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,343 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,346 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,348 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,351 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,354 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,357 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,361 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,363 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,366 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,369 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-05-19T08:15:31,373 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-05-19T08:15:31,375 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-05-19T08:15:31,379 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-05-19T08:15:31,381 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-05-19T08:15:31,384 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-05-19T08:15:31,387 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-05-19T08:15:31,390 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-05-19T08:15:31,393 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-05-19T08:15:31,395 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-05-19T08:15:31,398 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-05-19T08:15:31,401 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-05-19T08:15:31,403 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-05-19T08:15:31,406 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-05-19T08:15:31,410 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-05-19T08:15:31,413 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-05-19T08:15:31,416 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-05-19T08:15:31,420 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-05-19T08:15:31,422 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-05-19T08:15:31,425 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-05-19T08:15:31,428 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-05-19T08:15:31,430 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-05-19T08:15:31,433 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-05-19T08:15:31,436 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-05-19T08:15:31,438 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-05-19T08:15:31,440 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-05-19T08:15:31,443 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-05-19T08:15:31,445 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-05-19T08:15:31,447 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-05-19T08:15:31,449 copying build/lib/omicverse/external/harmony/_harmony_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-05-19T08:15:31,452 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-05-19T08:15:31,454 copying build/lib/omicverse/external/harmony/_harmony_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-05-19T08:15:31,457 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-05-19T08:15:31,460 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-05-19T08:15:31,462 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-05-19T08:15:31,463 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-05-19T08:15:31,465 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-05-19T08:15:31,467 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-05-19T08:15:31,470 creating build/bdist.linux-armv7l/wheel/omicverse/es 2026-05-19T08:15:31,471 copying build/lib/omicverse/es/_methods.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,473 copying build/lib/omicverse/es/_decouple.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,475 copying build/lib/omicverse/es/_gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,477 copying build/lib/omicverse/es/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,479 copying build/lib/omicverse/es/_mlm.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,482 copying build/lib/omicverse/es/_gsva.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,484 copying build/lib/omicverse/es/_viper.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,487 copying build/lib/omicverse/es/_zscore.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,489 copying build/lib/omicverse/es/_consensus.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,492 copying build/lib/omicverse/es/_datatype.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,494 copying build/lib/omicverse/es/_udt.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,496 copying build/lib/omicverse/es/_pv.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,498 copying build/lib/omicverse/es/_ulm.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,501 copying build/lib/omicverse/es/_mdt.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,504 copying build/lib/omicverse/es/_waggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,506 copying build/lib/omicverse/es/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,508 copying build/lib/omicverse/es/_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,511 copying build/lib/omicverse/es/_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,514 copying build/lib/omicverse/es/_odeps.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,517 copying build/lib/omicverse/es/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,520 copying build/lib/omicverse/es/_ora.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,522 copying build/lib/omicverse/es/_query_set.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,525 copying build/lib/omicverse/es/_run.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,527 copying build/lib/omicverse/es/_method.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-05-19T08:15:31,529 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-05-19T08:15:31,533 creating build/bdist.linux-armv7l/wheel/omicverse/metabol 2026-05-19T08:15:31,534 copying build/lib/omicverse/metabol/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,537 copying build/lib/omicverse/metabol/_impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,540 copying build/lib/omicverse/metabol/_integration.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,542 copying build/lib/omicverse/metabol/_mummichog.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,545 copying build/lib/omicverse/metabol/_correlation.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,548 copying build/lib/omicverse/metabol/_multifactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,551 copying build/lib/omicverse/metabol/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,553 copying build/lib/omicverse/metabol/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,556 copying build/lib/omicverse/metabol/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,558 copying build/lib/omicverse/metabol/_transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,560 copying build/lib/omicverse/metabol/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,562 copying build/lib/omicverse/metabol/_msea.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,565 copying build/lib/omicverse/metabol/_lipidomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,567 copying build/lib/omicverse/metabol/_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,570 copying build/lib/omicverse/metabol/_fetchers.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,572 copying build/lib/omicverse/metabol/pymetabo.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,575 copying build/lib/omicverse/metabol/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,577 copying build/lib/omicverse/metabol/_plsda.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,579 copying build/lib/omicverse/metabol/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,581 copying build/lib/omicverse/metabol/_id_mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,583 copying build/lib/omicverse/metabol/_biomarker.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-05-19T08:15:31,586 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-05-19T08:15:31,588 creating build/bdist.linux-armv7l/wheel/omicverse/micro 2026-05-19T08:15:31,589 copying build/lib/omicverse/micro/_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-05-19T08:15:31,592 copying build/lib/omicverse/micro/_pair.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-05-19T08:15:31,595 copying build/lib/omicverse/micro/_meta.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-05-19T08:15:31,598 copying build/lib/omicverse/micro/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-05-19T08:15:31,599 copying build/lib/omicverse/micro/_phylo.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-05-19T08:15:31,601 copying build/lib/omicverse/micro/_ord.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-05-19T08:15:31,604 copying build/lib/omicverse/micro/_pp.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-05-19T08:15:31,606 copying build/lib/omicverse/micro/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-05-19T08:15:31,608 copying build/lib/omicverse/micro/_da.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-05-19T08:15:31,610 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-05-19T08:15:31,613 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-05-19T08:15:31,616 running install_egg_info 2026-05-19T08:15:31,622 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.2.0-py3.11.egg-info 2026-05-19T08:15:31,637 running install_scripts 2026-05-19T08:15:31,651 creating build/bdist.linux-armv7l/wheel/omicverse-2.2.0.dist-info/WHEEL 2026-05-19T08:15:31,653 creating '/tmp/pip-wheel-nb18tn7d/.tmp-fsw7alj6/omicverse-2.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-19T08:15:31,657 adding 'omicverse/__init__.py' 2026-05-19T08:15:31,659 adding 'omicverse/_lazy_loader.py' 2026-05-19T08:15:31,661 adding 'omicverse/_monitor.py' 2026-05-19T08:15:31,662 adding 'omicverse/_oom_compat.py' 2026-05-19T08:15:31,664 adding 'omicverse/_optional.py' 2026-05-19T08:15:31,670 adding 'omicverse/_registry.py' 2026-05-19T08:15:31,675 adding 'omicverse/_settings.py' 2026-05-19T08:15:31,678 adding 'omicverse/claw.py' 2026-05-19T08:15:31,680 adding 'omicverse/cli.py' 2026-05-19T08:15:31,682 adding 'omicverse/agent/__init__.py' 2026-05-19T08:15:31,685 adding 'omicverse/alignment/STAR.py' 2026-05-19T08:15:31,686 adding 'omicverse/alignment/__init__.py' 2026-05-19T08:15:31,688 adding 'omicverse/alignment/_cli_utils.py' 2026-05-19T08:15:31,690 adding 'omicverse/alignment/_db.py' 2026-05-19T08:15:31,693 adding 'omicverse/alignment/amplicon_16s.py' 2026-05-19T08:15:31,695 adding 'omicverse/alignment/cutadapt.py' 2026-05-19T08:15:31,697 adding 'omicverse/alignment/dada2.py' 2026-05-19T08:15:31,699 adding 'omicverse/alignment/fastp.py' 2026-05-19T08:15:31,700 adding 'omicverse/alignment/fasttree.py' 2026-05-19T08:15:31,703 adding 'omicverse/alignment/featureCount.py' 2026-05-19T08:15:31,704 adding 'omicverse/alignment/fq_dump.py' 2026-05-19T08:15:31,708 adding 'omicverse/alignment/kb_api.py' 2026-05-19T08:15:31,710 adding 'omicverse/alignment/mafft.py' 2026-05-19T08:15:31,712 adding 'omicverse/alignment/phylogeny.py' 2026-05-19T08:15:31,713 adding 'omicverse/alignment/pipeline.py' 2026-05-19T08:15:31,715 adding 'omicverse/alignment/prefetch.py' 2026-05-19T08:15:31,717 adding 'omicverse/alignment/vsearch.py' 2026-05-19T08:15:31,722 adding 'omicverse/bulk/_Deseq2.py' 2026-05-19T08:15:31,726 adding 'omicverse/bulk/_Enrichment.py' 2026-05-19T08:15:31,729 adding 'omicverse/bulk/_Gene_module.py' 2026-05-19T08:15:31,731 adding 'omicverse/bulk/__init__.py' 2026-05-19T08:15:31,772 adding 'omicverse/bulk/_chm13.py' 2026-05-19T08:15:31,778 adding 'omicverse/bulk/_combat.py' 2026-05-19T08:15:31,780 adding 'omicverse/bulk/_decov.py' 2026-05-19T08:15:31,781 adding 'omicverse/bulk/_df_apply.py' 2026-05-19T08:15:31,786 adding 'omicverse/bulk/_dynamicTree.py' 2026-05-19T08:15:31,788 adding 'omicverse/bulk/_network.py' 2026-05-19T08:15:31,791 adding 'omicverse/bulk/_tcga.py' 2026-05-19T08:15:31,793 adding 'omicverse/bulk/_wgcna.py' 2026-05-19T08:15:31,795 adding 'omicverse/bulk/.ipynb_checkpoints/_wgcna-checkpoint.py' 2026-05-19T08:15:31,797 adding 'omicverse/bulk/_alignment/__init__.py' 2026-05-19T08:15:31,798 adding 'omicverse/bulk2single/__init__.py' 2026-05-19T08:15:31,802 adding 'omicverse/bulk2single/_bulk2single.py' 2026-05-19T08:15:31,803 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-05-19T08:15:31,806 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-05-19T08:15:31,811 adding 'omicverse/bulk2single/_map_utils.py' 2026-05-19T08:15:31,815 adding 'omicverse/bulk2single/_map_utils1.py' 2026-05-19T08:15:31,817 adding 'omicverse/bulk2single/_scsemi.py' 2026-05-19T08:15:31,820 adding 'omicverse/bulk2single/_single2spatial.py' 2026-05-19T08:15:31,822 adding 'omicverse/bulk2single/_utils.py' 2026-05-19T08:15:31,825 adding 'omicverse/bulk2single/_vae.py' 2026-05-19T08:15:31,827 adding 'omicverse/datasets/__init__.py' 2026-05-19T08:15:31,833 adding 'omicverse/datasets/_datasets.py' 2026-05-19T08:15:31,835 adding 'omicverse/datasets/_signatures.py' 2026-05-19T08:15:31,837 adding 'omicverse/datasets/data_files/README.md' 2026-05-19T08:15:31,877 adding 'omicverse/datasets/data_files/features_model_training_17.csv' 2026-05-19T08:15:31,879 adding 'omicverse/datasets/data_files/human_alias_list.txt' 2026-05-19T08:15:32,398 adding 'omicverse/datasets/data_files/mart_export.txt' 2026-05-19T08:15:32,429 adding 'omicverse/datasets/data_files/smoothDatakNN.py' 2026-05-19T08:15:32,433 adding 'omicverse/datasets/data_files/TF/allTFs_human.txt' 2026-05-19T08:15:32,436 adding 'omicverse/datasets/data_files/TF/allTFs_mouse.txt' 2026-05-19T08:15:32,459 adding 'omicverse/datasets/data_files/TF/allTFs_zebrafish.txt' 2026-05-19T08:15:32,501 adding 'omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-05-19T08:15:32,542 adding 'omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-05-19T08:15:32,548 adding 'omicverse/es/__init__.py' 2026-05-19T08:15:32,550 adding 'omicverse/es/_aucell.py' 2026-05-19T08:15:32,552 adding 'omicverse/es/_consensus.py' 2026-05-19T08:15:32,553 adding 'omicverse/es/_data.py' 2026-05-19T08:15:32,555 adding 'omicverse/es/_datatype.py' 2026-05-19T08:15:32,556 adding 'omicverse/es/_decouple.py' 2026-05-19T08:15:32,559 adding 'omicverse/es/_engine.py' 2026-05-19T08:15:32,562 adding 'omicverse/es/_gsea.py' 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2026-05-19T08:15:34,099 adding 'omicverse/external/datacollect/collectors/gnomad_collector.py' 2026-05-19T08:15:34,102 adding 'omicverse/external/datacollect/collectors/gtopdb_collector.py' 2026-05-19T08:15:34,104 adding 'omicverse/external/datacollect/collectors/gwas_catalog_collector.py' 2026-05-19T08:15:34,106 adding 'omicverse/external/datacollect/collectors/interpro_collector.py' 2026-05-19T08:15:34,108 adding 'omicverse/external/datacollect/collectors/kegg_collector.py' 2026-05-19T08:15:34,110 adding 'omicverse/external/datacollect/collectors/opentargets_collector.py' 2026-05-19T08:15:34,112 adding 'omicverse/external/datacollect/collectors/opentargets_genetics_collector.py' 2026-05-19T08:15:34,114 adding 'omicverse/external/datacollect/collectors/pdb_collector.py' 2026-05-19T08:15:34,116 adding 'omicverse/external/datacollect/collectors/pride_collector.py' 2026-05-19T08:15:34,118 adding 'omicverse/external/datacollect/collectors/reactome_collector.py' 2026-05-19T08:15:34,120 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