2026-05-19T14:44:10,555 Created temporary directory: /tmp/pip-ephem-wheel-cache-iwgb_eta 2026-05-19T14:44:10,556 Created temporary directory: /tmp/pip-build-tracker-h1itjl4g 2026-05-19T14:44:10,557 Initialized build tracking at /tmp/pip-build-tracker-h1itjl4g 2026-05-19T14:44:10,558 Created build tracker: /tmp/pip-build-tracker-h1itjl4g 2026-05-19T14:44:10,558 Entered build tracker: /tmp/pip-build-tracker-h1itjl4g 2026-05-19T14:44:10,559 Created temporary directory: /tmp/pip-wheel-8tp7w0sq 2026-05-19T14:44:10,562 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-19T14:44:10,564 Created temporary directory: /tmp/pip-ephem-wheel-cache-t9006iyi 2026-05-19T14:44:10,586 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-19T14:44:10,589 2 location(s) to search for versions of acellera-htmd: 2026-05-19T14:44:10,589 * https://pypi.org/simple/acellera-htmd/ 2026-05-19T14:44:10,589 * https://www.piwheels.org/simple/acellera-htmd/ 2026-05-19T14:44:10,590 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/ 2026-05-19T14:44:10,591 Getting page https://pypi.org/simple/acellera-htmd/ 2026-05-19T14:44:10,592 Found index url https://pypi.org/simple 2026-05-19T14:44:10,825 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json 2026-05-19T14:44:10,829 Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2 2026-05-19T14:44:10,829 Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4 2026-05-19T14:44:10,830 Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5 2026-05-19T14:44:10,831 Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6 2026-05-19T14:44:10,832 Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8 2026-05-19T14:44:10,833 Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9 2026-05-19T14:44:10,834 Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0 2026-05-19T14:44:10,835 Found link https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.1 2026-05-19T14:44:10,836 Found link https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.2 2026-05-19T14:44:10,837 Found link https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.3 2026-05-19T14:44:10,838 Found link https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.4 2026-05-19T14:44:10,840 Found link https://files.pythonhosted.org/packages/0f/6b/33aaeb43df7e5b74f5070ddd7ebdd18076821ccdadc3f529c50436d9d008/acellera_htmd-2.6.5.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.5 2026-05-19T14:44:10,840 Found link https://files.pythonhosted.org/packages/b3/a6/c2e5b33d5c296f1277038a88421d1a5f265aa0bc614fb5dcd7c041936ec2/acellera_htmd-2.7.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.0 2026-05-19T14:44:10,841 Found link https://files.pythonhosted.org/packages/dc/e5/90f20a69067a35bceeb16ad0d05bd7d11890e619053858f07a284c7a7be0/acellera_htmd-2.7.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.1 2026-05-19T14:44:10,842 Found link https://files.pythonhosted.org/packages/fc/29/822cbadb48f1f2a00b28ed13fa91ff69ab8f959c76469bde4727bc580a08/acellera_htmd-2.7.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.2 2026-05-19T14:44:10,843 Found link https://files.pythonhosted.org/packages/b4/e1/a568d33218f7b481485e1611574ec7aad47d5cf9f63a106703fe32a70c62/acellera_htmd-2.8.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.8.0 2026-05-19T14:44:10,844 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/ 2026-05-19T14:44:10,844 Getting page https://www.piwheels.org/simple/acellera-htmd/ 2026-05-19T14:44:10,846 Found index url https://www.piwheels.org/simple 2026-05-19T14:44:15,987 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/acellera-htmd/ 2026-05-19T14:44:21,692 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/acellera-htmd/ 2026-05-19T14:44:27,871 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/acellera-htmd/ 2026-05-19T14:44:32,994 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html 2026-05-19T14:44:33,004 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.7.2-py3-none-any.whl#sha256=5981b32e776cdd1db68041329bccaef131a9671f57a10bdd0e66b908e06c64a6 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,006 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.7.1-py3-none-any.whl#sha256=6f36f06960c7426c2cf2b06618e3d8cac0a977c4aa617ddb7751af386ad0ef96 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,007 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.7.0-py3-none-any.whl#sha256=404da5fc40b9411322f14455aebe19e3e684401fd2608a4fcf08b1f88762f2db (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,008 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.5-py3-none-any.whl#sha256=6a4478ef428c11d897f8bed0691db4c073ee7b0cc080975f0ce3794bb17152be (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,009 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.4-py3-none-any.whl#sha256=66c7d8d0f505d9c4515b9d989a0710120d27ef39bb24537b9729224bf711dcb6 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,009 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.3-py3-none-any.whl#sha256=32d22acbcd9e7adb5730ba97d1fe4de785a0814f14fd802980d53208fc6e291b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,010 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.2-py3-none-any.whl#sha256=eb4bab0a119829d1bc40fbb9918fd5ca3ed48922a4ebe7228717cf8de4aa1427 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,011 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.1-py3-none-any.whl#sha256=276acfba7f712b652f35f6ce7279fe2885edf66bce30142e45deb90188a58cfb (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,011 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.0-py3-none-any.whl#sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,012 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,012 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-19T14:44:33,013 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/) 2026-05-19T14:44:33,013 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/ 2026-05-19T14:44:33,014 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/ 2026-05-19T14:44:33,044 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates 2026-05-19T14:44:33,062 Collecting acellera-htmd==2.8.0 2026-05-19T14:44:33,064 Created temporary directory: /tmp/pip-unpack-1uqj3d3l 2026-05-19T14:44:33,299 Downloading acellera_htmd-2.8.0.tar.gz (4.1 MB) 2026-05-19T14:44:35,549 Added acellera-htmd==2.8.0 from https://files.pythonhosted.org/packages/b4/e1/a568d33218f7b481485e1611574ec7aad47d5cf9f63a106703fe32a70c62/acellera_htmd-2.8.0.tar.gz to build tracker '/tmp/pip-build-tracker-h1itjl4g' 2026-05-19T14:44:35,556 Created temporary directory: /tmp/pip-build-env-_tu1fui0 2026-05-19T14:44:35,561 Installing build dependencies: started 2026-05-19T14:44:35,562 Running command pip subprocess to install build dependencies 2026-05-19T14:44:36,705 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-19T14:44:37,152 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-19T14:44:37,175 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-19T14:44:43,636 Collecting setuptools 2026-05-19T14:44:43,637 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-19T14:44:43,653 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-19T14:44:43,996 Collecting setuptools-scm>=8 2026-05-19T14:44:43,997 Obtaining dependency information for setuptools-scm>=8 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata 2026-05-19T14:44:44,014 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB) 2026-05-19T14:44:44,095 Collecting vcs-versioning>=1.0.0.dev0 2026-05-19T14:44:44,096 Obtaining dependency information for vcs-versioning>=1.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata 2026-05-19T14:44:44,121 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata (1.6 kB) 2026-05-19T14:44:44,304 Collecting packaging>=20 2026-05-19T14:44:44,305 Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-19T14:44:44,317 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-19T14:44:44,521 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-19T14:44:44,540 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-19T14:44:44,561 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-19T14:44:44,638 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-19T14:44:44,670 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-19T14:44:44,695 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-19T14:44:44,721 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-19T14:44:44,830 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-19T14:44:47,639 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-05-19T14:44:51,324 Creating /tmp/pip-build-env-_tu1fui0/overlay/local/bin 2026-05-19T14:44:51,326 changing mode of /tmp/pip-build-env-_tu1fui0/overlay/local/bin/vcs-versioning to 755 2026-05-19T14:44:51,437 changing mode of /tmp/pip-build-env-_tu1fui0/overlay/local/bin/setuptools-scm to 755 2026-05-19T14:44:51,465 Successfully installed packaging-26.2 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-05-19T14:44:51,757 Installing build dependencies: finished with status 'done' 2026-05-19T14:44:51,764 Getting requirements to build wheel: started 2026-05-19T14:44:51,766 Running command Getting requirements to build wheel 2026-05-19T14:44:52,639 running egg_info 2026-05-19T14:44:52,647 writing acellera_htmd.egg-info/PKG-INFO 2026-05-19T14:44:52,653 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-05-19T14:44:52,655 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-05-19T14:44:52,659 writing requirements to acellera_htmd.egg-info/requires.txt 2026-05-19T14:44:52,661 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-05-19T14:44:52,776 /tmp/pip-build-env-_tu1fui0/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-19T14:44:52,777 return get_active_overrides().subprocess_timeout 2026-05-19T14:44:52,785 listing git files failed - pretending there aren't any 2026-05-19T14:44:52,790 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-05-19T14:44:52,814 reading manifest template 'MANIFEST.in' 2026-05-19T14:44:52,844 no previously-included directories found matching 'htmd/data' 2026-05-19T14:44:52,846 no previously-included directories found matching '.github' 2026-05-19T14:44:52,847 no previously-included directories found matching 'doc' 2026-05-19T14:44:52,849 no previously-included directories found matching 'package' 2026-05-19T14:44:52,850 no previously-included directories found matching 'tests' 2026-05-19T14:44:52,852 no previously-included directories found matching 'tutorials' 2026-05-19T14:44:52,854 warning: no previously-included files found matching 'Makefile' 2026-05-19T14:44:52,854 adding license file 'LICENSE' 2026-05-19T14:44:52,880 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-05-19T14:44:52,985 Getting requirements to build wheel: finished with status 'done' 2026-05-19T14:44:52,989 Created temporary directory: /tmp/pip-modern-metadata-ht231pqy 2026-05-19T14:44:52,991 Preparing metadata (pyproject.toml): started 2026-05-19T14:44:52,992 Running command Preparing metadata (pyproject.toml) 2026-05-19T14:44:53,732 running dist_info 2026-05-19T14:44:53,746 creating /tmp/pip-modern-metadata-ht231pqy/acellera_htmd.egg-info 2026-05-19T14:44:53,748 writing /tmp/pip-modern-metadata-ht231pqy/acellera_htmd.egg-info/PKG-INFO 2026-05-19T14:44:53,753 writing dependency_links to /tmp/pip-modern-metadata-ht231pqy/acellera_htmd.egg-info/dependency_links.txt 2026-05-19T14:44:53,754 writing entry points to /tmp/pip-modern-metadata-ht231pqy/acellera_htmd.egg-info/entry_points.txt 2026-05-19T14:44:53,758 writing requirements to /tmp/pip-modern-metadata-ht231pqy/acellera_htmd.egg-info/requires.txt 2026-05-19T14:44:53,759 writing top-level names to /tmp/pip-modern-metadata-ht231pqy/acellera_htmd.egg-info/top_level.txt 2026-05-19T14:44:53,761 writing manifest file '/tmp/pip-modern-metadata-ht231pqy/acellera_htmd.egg-info/SOURCES.txt' 2026-05-19T14:44:53,852 /tmp/pip-build-env-_tu1fui0/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-19T14:44:53,852 return get_active_overrides().subprocess_timeout 2026-05-19T14:44:53,859 listing git files failed - pretending there aren't any 2026-05-19T14:44:53,863 reading manifest file '/tmp/pip-modern-metadata-ht231pqy/acellera_htmd.egg-info/SOURCES.txt' 2026-05-19T14:44:53,865 reading manifest template 'MANIFEST.in' 2026-05-19T14:44:53,893 no previously-included directories found matching 'htmd/data' 2026-05-19T14:44:53,895 no previously-included directories found matching '.github' 2026-05-19T14:44:53,896 no previously-included directories found matching 'doc' 2026-05-19T14:44:53,897 no previously-included directories found matching 'package' 2026-05-19T14:44:53,898 no previously-included directories found matching 'tests' 2026-05-19T14:44:53,899 no previously-included directories found matching 'tutorials' 2026-05-19T14:44:53,901 warning: no previously-included files found matching 'Makefile' 2026-05-19T14:44:53,901 adding license file 'LICENSE' 2026-05-19T14:44:53,920 writing manifest file '/tmp/pip-modern-metadata-ht231pqy/acellera_htmd.egg-info/SOURCES.txt' 2026-05-19T14:44:53,922 creating '/tmp/pip-modern-metadata-ht231pqy/acellera_htmd-2.8.0.dist-info' 2026-05-19T14:44:54,059 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-19T14:44:54,063 Source in /tmp/pip-wheel-8tp7w0sq/acellera-htmd_a114c37340fd4ab185ae4f18eb818b42 has version 2.8.0, which satisfies requirement acellera-htmd==2.8.0 from https://files.pythonhosted.org/packages/b4/e1/a568d33218f7b481485e1611574ec7aad47d5cf9f63a106703fe32a70c62/acellera_htmd-2.8.0.tar.gz 2026-05-19T14:44:54,065 Removed acellera-htmd==2.8.0 from https://files.pythonhosted.org/packages/b4/e1/a568d33218f7b481485e1611574ec7aad47d5cf9f63a106703fe32a70c62/acellera_htmd-2.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-h1itjl4g' 2026-05-19T14:44:54,071 Created temporary directory: /tmp/pip-unpack-0l91tj0h 2026-05-19T14:44:54,071 Building wheels for collected packages: acellera-htmd 2026-05-19T14:44:54,076 Created temporary directory: /tmp/pip-wheel-tw5xudoh 2026-05-19T14:44:54,076 Destination directory: /tmp/pip-wheel-tw5xudoh 2026-05-19T14:44:54,079 Building wheel for acellera-htmd (pyproject.toml): started 2026-05-19T14:44:54,080 Running command Building wheel for acellera-htmd (pyproject.toml) 2026-05-19T14:44:54,820 running bdist_wheel 2026-05-19T14:44:54,845 running build 2026-05-19T14:44:54,846 running build_py 2026-05-19T14:44:54,848 creating build/lib/htmd 2026-05-19T14:44:54,850 copying htmd/decorators.py -> build/lib/htmd 2026-05-19T14:44:54,852 copying htmd/util.py -> build/lib/htmd 2026-05-19T14:44:54,854 copying htmd/kinetics.py -> build/lib/htmd 2026-05-19T14:44:54,856 copying htmd/metricdatagenerator.py -> build/lib/htmd 2026-05-19T14:44:54,859 copying htmd/mutualinformation.py -> build/lib/htmd 2026-05-19T14:44:54,861 copying htmd/ui.py -> build/lib/htmd 2026-05-19T14:44:54,863 copying htmd/dock.py -> build/lib/htmd 2026-05-19T14:44:54,866 copying htmd/config.py -> build/lib/htmd 2026-05-19T14:44:54,868 copying htmd/parallelprogress.py -> build/lib/htmd 2026-05-19T14:44:54,869 copying htmd/pathplanning.py -> build/lib/htmd 2026-05-19T14:44:54,872 copying htmd/latest.py -> build/lib/htmd 2026-05-19T14:44:54,874 copying htmd/simlist.py -> build/lib/htmd 2026-05-19T14:44:54,877 copying htmd/model.py -> build/lib/htmd 2026-05-19T14:44:54,880 copying htmd/metricdata.py -> build/lib/htmd 2026-05-19T14:44:54,883 copying htmd/home.py -> build/lib/htmd 2026-05-19T14:44:54,885 copying htmd/versionwarnings.py -> build/lib/htmd 2026-05-19T14:44:54,887 copying htmd/__init__.py -> build/lib/htmd 2026-05-19T14:44:54,889 copying htmd/license.py -> build/lib/htmd 2026-05-19T14:44:54,891 copying htmd/session.py -> build/lib/htmd 2026-05-19T14:44:54,893 copying htmd/units.py -> build/lib/htmd 2026-05-19T14:44:54,896 creating build/lib/htmd/projections 2026-05-19T14:44:54,897 copying htmd/projections/tica.py -> build/lib/htmd/projections 2026-05-19T14:44:54,900 copying htmd/projections/gwpca.py -> build/lib/htmd/projections 2026-05-19T14:44:54,902 copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections 2026-05-19T14:44:54,904 copying htmd/projections/__init__.py -> build/lib/htmd/projections 2026-05-19T14:44:54,906 copying htmd/projections/metric.py -> build/lib/htmd/projections 2026-05-19T14:44:54,909 creating build/lib/htmd/builder 2026-05-19T14:44:54,910 copying htmd/builder/amber.py -> build/lib/htmd/builder 2026-05-19T14:44:54,913 copying htmd/builder/solvate.py -> build/lib/htmd/builder 2026-05-19T14:44:54,916 copying htmd/builder/charmm.py -> build/lib/htmd/builder 2026-05-19T14:44:54,919 copying htmd/builder/_ambertools.py -> build/lib/htmd/builder 2026-05-19T14:44:54,921 copying htmd/builder/openff.py -> build/lib/htmd/builder 2026-05-19T14:44:54,924 copying htmd/builder/ionize.py -> build/lib/htmd/builder 2026-05-19T14:44:54,926 copying htmd/builder/builder.py -> build/lib/htmd/builder 2026-05-19T14:44:54,929 copying htmd/builder/__init__.py -> build/lib/htmd/builder 2026-05-19T14:44:54,931 copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder 2026-05-19T14:44:54,933 copying htmd/builder/nonstandard.py -> build/lib/htmd/builder 2026-05-19T14:44:54,937 creating build/lib/htmd/adaptive 2026-05-19T14:44:54,938 copying htmd/adaptive/util.py -> build/lib/htmd/adaptive 2026-05-19T14:44:54,940 copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive 2026-05-19T14:44:54,943 copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive 2026-05-19T14:44:54,946 copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive 2026-05-19T14:44:54,949 copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive 2026-05-19T14:44:54,951 copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive 2026-05-19T14:44:54,954 copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive 2026-05-19T14:44:54,956 creating build/lib/htmd/clustering 2026-05-19T14:44:54,957 copying htmd/clustering/regular.py -> build/lib/htmd/clustering 2026-05-19T14:44:54,960 copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering 2026-05-19T14:44:54,962 copying htmd/clustering/__init__.py -> build/lib/htmd/clustering 2026-05-19T14:44:54,964 creating build/lib/htmd/membranebuilder 2026-05-19T14:44:54,965 copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder 2026-05-19T14:44:54,967 copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder 2026-05-19T14:44:54,971 copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder 2026-05-19T14:44:54,973 copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder 2026-05-19T14:44:54,975 copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder 2026-05-19T14:44:55,033 creating build/lib/htmd/share 2026-05-19T14:44:55,034 copying htmd/share/license-checker -> build/lib/htmd/share 2026-05-19T14:44:55,045 creating build/lib/htmd/share/solvate 2026-05-19T14:44:55,046 copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate 2026-05-19T14:44:55,087 creating build/lib/htmd/share/builder 2026-05-19T14:44:55,088 copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder 2026-05-19T14:44:55,090 copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder 2026-05-19T14:44:55,093 copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder 2026-05-19T14:44:55,100 creating build/lib/htmd/share/builder/caps 2026-05-19T14:44:55,101 copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps 2026-05-19T14:44:55,103 copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps 2026-05-19T14:44:55,105 copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps 2026-05-19T14:44:55,108 copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps 2026-05-19T14:44:55,110 copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps 2026-05-19T14:44:55,112 creating build/lib/htmd/share/builder/charmmfiles 2026-05-19T14:44:55,113 copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles 2026-05-19T14:44:55,116 copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles 2026-05-19T14:44:55,118 creating build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,119 copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,121 copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,141 copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,147 copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,154 copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,169 copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,175 copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,237 copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,244 copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,250 copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:55,261 creating build/lib/htmd/share/builder/charmmfiles/str 2026-05-19T14:44:55,263 copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str 2026-05-19T14:44:55,267 creating build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-05-19T14:44:55,268 copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-05-19T14:44:55,272 creating build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:55,274 copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:55,278 copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:55,281 copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:55,284 copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:55,286 copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:55,289 creating build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,290 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,304 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,306 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,313 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,371 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,396 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,406 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,416 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,428 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,442 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,449 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,459 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,467 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,491 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,504 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,532 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,535 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,555 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,562 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:55,566 creating build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:55,568 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:55,589 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:55,592 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:55,599 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:55,604 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:55,622 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:55,627 creating build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:55,628 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:55,633 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:55,652 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:55,656 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:55,679 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:55,682 creating build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,683 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,686 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,690 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,695 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,699 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,702 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,704 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,709 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,736 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,739 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,743 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,746 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:55,752 creating build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,753 copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,756 copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,761 copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,767 copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,772 copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,777 copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,780 copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,783 copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,786 copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,790 copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:55,805 creating build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,807 copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,810 copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,812 copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,814 copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,816 copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,818 copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,821 copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,823 copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,826 copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,828 copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,830 copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,833 copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,835 copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,838 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,840 copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,843 copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,845 copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,847 copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,849 copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,852 copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,854 copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,856 copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,858 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,860 copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,864 copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,866 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,868 copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,871 copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,873 copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,875 copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,877 copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,880 copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,882 copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,884 copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,886 copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,888 copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,891 copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,893 copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,895 copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,898 copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,900 copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,902 copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,905 copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,907 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,910 copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,913 copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,916 copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,918 copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:55,921 creating build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,922 copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,925 copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,928 copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,931 copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,934 copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,938 copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,940 copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,944 copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,947 copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,949 copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,952 copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,955 copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,958 copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,962 copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,965 copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,968 copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,970 copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,973 copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,975 copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,979 copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,982 copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,984 copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:55,987 creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:55,989 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:55,996 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:55,999 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:56,002 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:56,005 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:56,008 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:56,010 creating build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,011 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,014 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,016 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,018 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,020 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,022 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,024 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,027 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,029 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,031 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,033 copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,035 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,038 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,040 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,042 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,045 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,047 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,049 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,051 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,053 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,056 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,058 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,060 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,063 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,065 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,067 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,069 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,072 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,074 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,076 copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,079 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,081 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,083 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,085 copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,087 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,089 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,091 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,093 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,095 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,097 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,099 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,101 copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,103 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,105 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,107 copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,109 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,111 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,113 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,115 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,117 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,118 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,121 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,123 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,125 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,127 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,129 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,131 copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,133 copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,136 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,138 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,140 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,142 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,144 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,146 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,148 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,150 copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,154 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,156 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,158 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,160 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,162 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,164 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,166 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,168 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,170 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,172 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,174 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,177 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,179 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,181 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,183 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,186 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,188 copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,190 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,192 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,195 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,197 copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,199 copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,201 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,204 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,206 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,208 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,210 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,212 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,214 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,217 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,219 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,221 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,223 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,225 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,227 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,230 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,232 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,234 copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,236 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,238 copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,240 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,243 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,244 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,247 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,249 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,251 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,253 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,256 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,258 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,260 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,262 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,265 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,267 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,269 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,271 copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,273 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,276 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,278 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,280 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,282 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,284 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,286 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,288 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,290 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,292 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,295 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:56,297 creating build/lib/htmd/share/membranebuilder/lipids 2026-05-19T14:44:56,298 copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids 2026-05-19T14:44:56,301 creating build/lib/htmd/share/membranebuilder/lipids/dlpa 2026-05-19T14:44:56,301 copying htmd/share/membranebuilder/lipids/dlpa/dlpa.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpa 2026-05-19T14:44:56,304 creating build/lib/htmd/share/membranebuilder/lipids/dspc 2026-05-19T14:44:56,305 copying htmd/share/membranebuilder/lipids/dspc/dspc.cif -> build/lib/htmd/share/membranebuilder/lipids/dspc 2026-05-19T14:44:56,309 creating build/lib/htmd/share/membranebuilder/lipids/dspa 2026-05-19T14:44:56,309 copying htmd/share/membranebuilder/lipids/dspa/dspa.cif -> build/lib/htmd/share/membranebuilder/lipids/dspa 2026-05-19T14:44:56,312 creating build/lib/htmd/share/membranebuilder/lipids/dlpc 2026-05-19T14:44:56,313 copying htmd/share/membranebuilder/lipids/dlpc/dlpc.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpc 2026-05-19T14:44:56,316 creating build/lib/htmd/share/membranebuilder/lipids/dmpa 2026-05-19T14:44:56,317 copying htmd/share/membranebuilder/lipids/dmpa/dmpa.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpa 2026-05-19T14:44:56,320 creating build/lib/htmd/share/membranebuilder/lipids/dmps 2026-05-19T14:44:56,321 copying htmd/share/membranebuilder/lipids/dmps/dmps.cif -> build/lib/htmd/share/membranebuilder/lipids/dmps 2026-05-19T14:44:56,324 creating build/lib/htmd/share/membranebuilder/lipids/dmpg 2026-05-19T14:44:56,325 copying htmd/share/membranebuilder/lipids/dmpg/dmpg.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpg 2026-05-19T14:44:56,328 creating build/lib/htmd/share/membranebuilder/lipids/dspe 2026-05-19T14:44:56,329 copying htmd/share/membranebuilder/lipids/dspe/dspe.cif -> build/lib/htmd/share/membranebuilder/lipids/dspe 2026-05-19T14:44:56,332 creating build/lib/htmd/share/membranebuilder/lipids/pope 2026-05-19T14:44:56,333 copying htmd/share/membranebuilder/lipids/pope/pope.cif -> build/lib/htmd/share/membranebuilder/lipids/pope 2026-05-19T14:44:56,337 creating build/lib/htmd/share/membranebuilder/lipids/dlps 2026-05-19T14:44:56,338 copying htmd/share/membranebuilder/lipids/dlps/dlps.cif -> build/lib/htmd/share/membranebuilder/lipids/dlps 2026-05-19T14:44:56,341 creating build/lib/htmd/share/membranebuilder/lipids/pops 2026-05-19T14:44:56,342 copying htmd/share/membranebuilder/lipids/pops/pops.cif -> build/lib/htmd/share/membranebuilder/lipids/pops 2026-05-19T14:44:56,345 creating build/lib/htmd/share/membranebuilder/lipids/dlpe 2026-05-19T14:44:56,347 copying htmd/share/membranebuilder/lipids/dlpe/dlpe.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpe 2026-05-19T14:44:56,349 creating build/lib/htmd/share/membranebuilder/lipids/dlpg 2026-05-19T14:44:56,350 copying htmd/share/membranebuilder/lipids/dlpg/dlpg.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpg 2026-05-19T14:44:56,353 creating build/lib/htmd/share/membranebuilder/lipids/popg 2026-05-19T14:44:56,354 copying htmd/share/membranebuilder/lipids/popg/popg.cif -> build/lib/htmd/share/membranebuilder/lipids/popg 2026-05-19T14:44:56,357 creating build/lib/htmd/share/membranebuilder/lipids/dopc 2026-05-19T14:44:56,358 copying htmd/share/membranebuilder/lipids/dopc/dopc.cif -> build/lib/htmd/share/membranebuilder/lipids/dopc 2026-05-19T14:44:56,361 creating build/lib/htmd/share/membranebuilder/lipids/sdpg 2026-05-19T14:44:56,362 copying htmd/share/membranebuilder/lipids/sdpg/sdpg.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpg 2026-05-19T14:44:56,365 creating build/lib/htmd/share/membranebuilder/lipids/dppg 2026-05-19T14:44:56,366 copying htmd/share/membranebuilder/lipids/dppg/dppg.cif -> build/lib/htmd/share/membranebuilder/lipids/dppg 2026-05-19T14:44:56,369 creating build/lib/htmd/share/membranebuilder/lipids/dppc 2026-05-19T14:44:56,370 copying htmd/share/membranebuilder/lipids/dppc/dppc.cif -> build/lib/htmd/share/membranebuilder/lipids/dppc 2026-05-19T14:44:56,373 creating build/lib/htmd/share/membranebuilder/lipids/dopg 2026-05-19T14:44:56,374 copying htmd/share/membranebuilder/lipids/dopg/dopg.cif -> build/lib/htmd/share/membranebuilder/lipids/dopg 2026-05-19T14:44:56,377 creating build/lib/htmd/share/membranebuilder/lipids/dppe 2026-05-19T14:44:56,378 copying htmd/share/membranebuilder/lipids/dppe/dppe.cif -> build/lib/htmd/share/membranebuilder/lipids/dppe 2026-05-19T14:44:56,381 creating build/lib/htmd/share/membranebuilder/lipids/dapg 2026-05-19T14:44:56,382 copying htmd/share/membranebuilder/lipids/dapg/dapg.cif -> build/lib/htmd/share/membranebuilder/lipids/dapg 2026-05-19T14:44:56,385 creating build/lib/htmd/share/membranebuilder/lipids/dapa 2026-05-19T14:44:56,386 copying htmd/share/membranebuilder/lipids/dapa/dapa.cif -> build/lib/htmd/share/membranebuilder/lipids/dapa 2026-05-19T14:44:56,389 creating build/lib/htmd/share/membranebuilder/lipids/dsps 2026-05-19T14:44:56,390 copying htmd/share/membranebuilder/lipids/dsps/dsps.cif -> build/lib/htmd/share/membranebuilder/lipids/dsps 2026-05-19T14:44:56,393 creating build/lib/htmd/share/membranebuilder/lipids/dmpe 2026-05-19T14:44:56,394 copying htmd/share/membranebuilder/lipids/dmpe/dmpe.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpe 2026-05-19T14:44:56,397 creating build/lib/htmd/share/membranebuilder/lipids/chl1 2026-05-19T14:44:56,398 copying htmd/share/membranebuilder/lipids/chl1/chl1.cif -> build/lib/htmd/share/membranebuilder/lipids/chl1 2026-05-19T14:44:56,401 creating build/lib/htmd/share/membranebuilder/lipids/dspg 2026-05-19T14:44:56,402 copying htmd/share/membranebuilder/lipids/dspg/dspg.cif -> build/lib/htmd/share/membranebuilder/lipids/dspg 2026-05-19T14:44:56,405 creating build/lib/htmd/share/membranebuilder/lipids/sdps 2026-05-19T14:44:56,406 copying htmd/share/membranebuilder/lipids/sdps/sdps.cif -> build/lib/htmd/share/membranebuilder/lipids/sdps 2026-05-19T14:44:56,409 creating build/lib/htmd/share/membranebuilder/lipids/sdpa 2026-05-19T14:44:56,410 copying htmd/share/membranebuilder/lipids/sdpa/sdpa.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpa 2026-05-19T14:44:56,413 creating build/lib/htmd/share/membranebuilder/lipids/daps 2026-05-19T14:44:56,414 copying htmd/share/membranebuilder/lipids/daps/daps.cif -> build/lib/htmd/share/membranebuilder/lipids/daps 2026-05-19T14:44:56,417 creating build/lib/htmd/share/membranebuilder/lipids/dpps 2026-05-19T14:44:56,418 copying htmd/share/membranebuilder/lipids/dpps/dpps.cif -> build/lib/htmd/share/membranebuilder/lipids/dpps 2026-05-19T14:44:56,421 creating build/lib/htmd/share/membranebuilder/lipids/popa 2026-05-19T14:44:56,423 copying htmd/share/membranebuilder/lipids/popa/popa.cif -> build/lib/htmd/share/membranebuilder/lipids/popa 2026-05-19T14:44:56,425 creating build/lib/htmd/share/membranebuilder/lipids/dmpc 2026-05-19T14:44:56,427 copying htmd/share/membranebuilder/lipids/dmpc/dmpc.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpc 2026-05-19T14:44:56,430 creating build/lib/htmd/share/membranebuilder/lipids/dapc 2026-05-19T14:44:56,431 copying htmd/share/membranebuilder/lipids/dapc/dapc.cif -> build/lib/htmd/share/membranebuilder/lipids/dapc 2026-05-19T14:44:56,434 creating build/lib/htmd/share/membranebuilder/lipids/dape 2026-05-19T14:44:56,435 copying htmd/share/membranebuilder/lipids/dape/dape.cif -> build/lib/htmd/share/membranebuilder/lipids/dape 2026-05-19T14:44:56,438 creating build/lib/htmd/share/membranebuilder/lipids/sdpe 2026-05-19T14:44:56,439 copying htmd/share/membranebuilder/lipids/sdpe/sdpe.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpe 2026-05-19T14:44:56,441 creating build/lib/htmd/share/membranebuilder/lipids/dops 2026-05-19T14:44:56,442 copying htmd/share/membranebuilder/lipids/dops/dops.cif -> build/lib/htmd/share/membranebuilder/lipids/dops 2026-05-19T14:44:56,445 creating build/lib/htmd/share/membranebuilder/lipids/dopa 2026-05-19T14:44:56,446 copying htmd/share/membranebuilder/lipids/dopa/dopa.cif -> build/lib/htmd/share/membranebuilder/lipids/dopa 2026-05-19T14:44:56,449 creating build/lib/htmd/share/membranebuilder/lipids/dope 2026-05-19T14:44:56,450 copying htmd/share/membranebuilder/lipids/dope/dope.cif -> build/lib/htmd/share/membranebuilder/lipids/dope 2026-05-19T14:44:56,453 creating build/lib/htmd/share/membranebuilder/lipids/sdpc 2026-05-19T14:44:56,454 copying htmd/share/membranebuilder/lipids/sdpc/sdpc.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpc 2026-05-19T14:44:56,457 creating build/lib/htmd/share/membranebuilder/lipids/popc 2026-05-19T14:44:56,458 copying htmd/share/membranebuilder/lipids/popc/popc.cif -> build/lib/htmd/share/membranebuilder/lipids/popc 2026-05-19T14:44:56,461 creating build/lib/htmd/share/membranebuilder/lipids/dppa 2026-05-19T14:44:56,462 copying htmd/share/membranebuilder/lipids/dppa/dppa.cif -> build/lib/htmd/share/membranebuilder/lipids/dppa 2026-05-19T14:44:56,482 installing to build/bdist.linux-armv7l/wheel 2026-05-19T14:44:56,483 running install 2026-05-19T14:44:56,506 running install_lib 2026-05-19T14:44:56,514 creating build/bdist.linux-armv7l/wheel 2026-05-19T14:44:56,517 creating build/bdist.linux-armv7l/wheel/htmd 2026-05-19T14:44:56,518 copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:56,520 creating build/bdist.linux-armv7l/wheel/htmd/share 2026-05-19T14:44:56,522 creating build/bdist.linux-armv7l/wheel/htmd/share/solvate 2026-05-19T14:44:56,523 copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate 2026-05-19T14:44:56,555 creating build/bdist.linux-armv7l/wheel/htmd/share/builder 2026-05-19T14:44:56,557 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps 2026-05-19T14:44:56,558 copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-05-19T14:44:56,560 copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-05-19T14:44:56,562 copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-05-19T14:44:56,564 copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-05-19T14:44:56,566 copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-05-19T14:44:56,569 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles 2026-05-19T14:44:56,570 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,572 copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,574 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,586 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,589 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,592 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,602 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,604 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,651 copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,654 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,657 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-19T14:44:56,664 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str 2026-05-19T14:44:56,665 copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str 2026-05-19T14:44:56,668 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd 2026-05-19T14:44:56,669 copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd 2026-05-19T14:44:56,672 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:56,673 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:56,676 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:56,678 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:56,680 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:56,682 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-05-19T14:44:56,685 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,686 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,693 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,695 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,699 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,740 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,759 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,762 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,767 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,773 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,780 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,786 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,797 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,809 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,838 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,851 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,877 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,879 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,895 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,900 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-19T14:44:56,905 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:56,907 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:56,931 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:56,935 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:56,941 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:56,946 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:56,966 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-19T14:44:56,973 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:56,974 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:56,978 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:56,997 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:57,002 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:57,025 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-05-19T14:44:57,029 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,031 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,035 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,040 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,046 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,052 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,055 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,059 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,064 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,108 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,111 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,115 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,117 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-19T14:44:57,123 copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-05-19T14:44:57,125 copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-05-19T14:44:57,128 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,130 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,133 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,138 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,144 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,149 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,154 copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,156 copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,159 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,161 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,164 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-19T14:44:57,186 copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-05-19T14:44:57,189 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles 2026-05-19T14:44:57,191 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,192 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,195 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,197 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,200 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,202 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,204 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,206 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,208 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,210 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,212 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,215 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,217 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,219 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,221 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,223 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,225 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,227 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,229 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,231 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,233 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,235 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,237 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,239 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,241 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,244 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,246 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,249 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,251 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,253 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,255 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,257 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,259 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,261 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,263 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,265 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,267 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,270 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,272 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,274 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,277 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,279 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,280 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,282 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,284 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,286 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,287 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,289 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,291 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-19T14:44:57,293 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,294 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,297 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,299 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,301 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,304 copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,307 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,309 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,312 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,314 copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,316 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,319 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,321 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,324 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,326 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,329 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,330 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,332 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,335 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,337 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,339 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,341 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,343 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-19T14:44:57,347 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:57,348 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:57,352 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:57,355 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:57,357 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:57,359 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:57,361 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-19T14:44:57,367 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,368 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,371 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,373 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,375 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,377 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,379 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,382 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,384 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,386 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,388 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,390 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,392 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,394 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,396 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,398 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,400 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,402 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,404 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,406 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,408 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,410 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,412 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,414 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,416 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,418 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,420 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,422 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,424 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,426 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,428 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,430 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,432 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,434 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,437 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,438 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,440 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,442 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,444 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,446 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,448 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,450 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,452 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,454 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,456 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,458 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,460 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,462 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,464 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,466 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,468 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,470 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,472 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,474 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,476 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,478 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,480 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,482 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,484 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,486 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,488 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,490 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,492 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,494 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,496 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,498 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,499 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,504 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,505 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,507 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,509 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,511 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,513 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,515 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,517 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,519 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,521 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,523 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,526 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,528 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,530 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,533 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,535 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,538 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,540 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,543 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,545 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,547 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,550 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,552 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,554 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,556 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,559 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,561 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,563 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,565 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,568 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,570 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,573 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,575 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,577 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,580 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,582 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,585 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,587 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,590 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,592 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,595 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,598 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,600 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,602 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,605 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,607 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,609 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,611 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,614 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,616 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,618 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,621 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,623 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,625 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,627 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,629 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,631 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,633 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,635 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,637 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,639 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,642 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,644 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,645 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,648 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,650 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-19T14:44:57,652 copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-05-19T14:44:57,654 copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-05-19T14:44:57,660 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder 2026-05-19T14:44:57,663 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids 2026-05-19T14:44:57,664 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpa 2026-05-19T14:44:57,666 copying build/lib/htmd/share/membranebuilder/lipids/dlpa/dlpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpa 2026-05-19T14:44:57,669 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspc 2026-05-19T14:44:57,670 copying build/lib/htmd/share/membranebuilder/lipids/dspc/dspc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspc 2026-05-19T14:44:57,673 copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids 2026-05-19T14:44:57,675 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspa 2026-05-19T14:44:57,676 copying build/lib/htmd/share/membranebuilder/lipids/dspa/dspa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspa 2026-05-19T14:44:57,680 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpc 2026-05-19T14:44:57,681 copying build/lib/htmd/share/membranebuilder/lipids/dlpc/dlpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpc 2026-05-19T14:44:57,685 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpa 2026-05-19T14:44:57,686 copying build/lib/htmd/share/membranebuilder/lipids/dmpa/dmpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpa 2026-05-19T14:44:57,689 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmps 2026-05-19T14:44:57,690 copying build/lib/htmd/share/membranebuilder/lipids/dmps/dmps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmps 2026-05-19T14:44:57,694 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpg 2026-05-19T14:44:57,695 copying build/lib/htmd/share/membranebuilder/lipids/dmpg/dmpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpg 2026-05-19T14:44:57,698 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspe 2026-05-19T14:44:57,699 copying build/lib/htmd/share/membranebuilder/lipids/dspe/dspe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspe 2026-05-19T14:44:57,703 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope 2026-05-19T14:44:57,704 copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope 2026-05-19T14:44:57,707 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlps 2026-05-19T14:44:57,708 copying build/lib/htmd/share/membranebuilder/lipids/dlps/dlps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlps 2026-05-19T14:44:57,711 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pops 2026-05-19T14:44:57,712 copying build/lib/htmd/share/membranebuilder/lipids/pops/pops.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pops 2026-05-19T14:44:57,715 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpe 2026-05-19T14:44:57,716 copying build/lib/htmd/share/membranebuilder/lipids/dlpe/dlpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpe 2026-05-19T14:44:57,719 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpg 2026-05-19T14:44:57,721 copying build/lib/htmd/share/membranebuilder/lipids/dlpg/dlpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpg 2026-05-19T14:44:57,724 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popg 2026-05-19T14:44:57,725 copying build/lib/htmd/share/membranebuilder/lipids/popg/popg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popg 2026-05-19T14:44:57,728 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopc 2026-05-19T14:44:57,729 copying build/lib/htmd/share/membranebuilder/lipids/dopc/dopc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopc 2026-05-19T14:44:57,732 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpg 2026-05-19T14:44:57,733 copying build/lib/htmd/share/membranebuilder/lipids/sdpg/sdpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpg 2026-05-19T14:44:57,737 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppg 2026-05-19T14:44:57,738 copying build/lib/htmd/share/membranebuilder/lipids/dppg/dppg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppg 2026-05-19T14:44:57,742 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppc 2026-05-19T14:44:57,743 copying build/lib/htmd/share/membranebuilder/lipids/dppc/dppc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppc 2026-05-19T14:44:57,746 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopg 2026-05-19T14:44:57,747 copying build/lib/htmd/share/membranebuilder/lipids/dopg/dopg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopg 2026-05-19T14:44:57,750 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppe 2026-05-19T14:44:57,751 copying build/lib/htmd/share/membranebuilder/lipids/dppe/dppe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppe 2026-05-19T14:44:57,755 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapg 2026-05-19T14:44:57,756 copying build/lib/htmd/share/membranebuilder/lipids/dapg/dapg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapg 2026-05-19T14:44:57,759 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapa 2026-05-19T14:44:57,760 copying build/lib/htmd/share/membranebuilder/lipids/dapa/dapa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapa 2026-05-19T14:44:57,763 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dsps 2026-05-19T14:44:57,764 copying build/lib/htmd/share/membranebuilder/lipids/dsps/dsps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dsps 2026-05-19T14:44:57,768 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpe 2026-05-19T14:44:57,769 copying build/lib/htmd/share/membranebuilder/lipids/dmpe/dmpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpe 2026-05-19T14:44:57,772 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1 2026-05-19T14:44:57,773 copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1 2026-05-19T14:44:57,776 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspg 2026-05-19T14:44:57,778 copying build/lib/htmd/share/membranebuilder/lipids/dspg/dspg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspg 2026-05-19T14:44:57,781 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdps 2026-05-19T14:44:57,782 copying build/lib/htmd/share/membranebuilder/lipids/sdps/sdps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdps 2026-05-19T14:44:57,785 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpa 2026-05-19T14:44:57,786 copying build/lib/htmd/share/membranebuilder/lipids/sdpa/sdpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpa 2026-05-19T14:44:57,790 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/daps 2026-05-19T14:44:57,791 copying build/lib/htmd/share/membranebuilder/lipids/daps/daps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/daps 2026-05-19T14:44:57,794 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dpps 2026-05-19T14:44:57,795 copying build/lib/htmd/share/membranebuilder/lipids/dpps/dpps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dpps 2026-05-19T14:44:57,798 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popa 2026-05-19T14:44:57,799 copying build/lib/htmd/share/membranebuilder/lipids/popa/popa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popa 2026-05-19T14:44:57,803 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpc 2026-05-19T14:44:57,804 copying build/lib/htmd/share/membranebuilder/lipids/dmpc/dmpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpc 2026-05-19T14:44:57,807 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapc 2026-05-19T14:44:57,808 copying build/lib/htmd/share/membranebuilder/lipids/dapc/dapc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapc 2026-05-19T14:44:57,812 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dape 2026-05-19T14:44:57,813 copying build/lib/htmd/share/membranebuilder/lipids/dape/dape.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dape 2026-05-19T14:44:57,816 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpe 2026-05-19T14:44:57,817 copying build/lib/htmd/share/membranebuilder/lipids/sdpe/sdpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpe 2026-05-19T14:44:57,820 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dops 2026-05-19T14:44:57,821 copying build/lib/htmd/share/membranebuilder/lipids/dops/dops.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dops 2026-05-19T14:44:57,824 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopa 2026-05-19T14:44:57,825 copying build/lib/htmd/share/membranebuilder/lipids/dopa/dopa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopa 2026-05-19T14:44:57,829 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dope 2026-05-19T14:44:57,830 copying build/lib/htmd/share/membranebuilder/lipids/dope/dope.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dope 2026-05-19T14:44:57,833 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpc 2026-05-19T14:44:57,834 copying build/lib/htmd/share/membranebuilder/lipids/sdpc/sdpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpc 2026-05-19T14:44:57,837 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc 2026-05-19T14:44:57,838 copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc 2026-05-19T14:44:57,842 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppa 2026-05-19T14:44:57,843 copying build/lib/htmd/share/membranebuilder/lipids/dppa/dppa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppa 2026-05-19T14:44:57,846 copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share 2026-05-19T14:44:57,853 copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,855 copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,859 creating build/bdist.linux-armv7l/wheel/htmd/projections 2026-05-19T14:44:57,860 copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-05-19T14:44:57,862 copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-05-19T14:44:57,864 copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-05-19T14:44:57,866 copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-05-19T14:44:57,868 copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-05-19T14:44:57,871 copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,874 copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,876 copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,879 creating build/bdist.linux-armv7l/wheel/htmd/builder 2026-05-19T14:44:57,880 copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-19T14:44:57,883 copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-19T14:44:57,886 copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-19T14:44:57,889 copying build/lib/htmd/builder/_ambertools.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-19T14:44:57,891 copying build/lib/htmd/builder/openff.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-19T14:44:57,894 copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-19T14:44:57,897 copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-19T14:44:57,899 copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-19T14:44:57,901 copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-19T14:44:57,904 copying build/lib/htmd/builder/nonstandard.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-19T14:44:57,907 copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,909 copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,911 copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,913 copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,916 copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,918 copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,921 copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,925 creating build/bdist.linux-armv7l/wheel/htmd/adaptive 2026-05-19T14:44:57,926 copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-19T14:44:57,928 copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-19T14:44:57,931 copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-19T14:44:57,934 copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-19T14:44:57,937 copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-19T14:44:57,939 copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-19T14:44:57,942 copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-19T14:44:57,944 copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,948 copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,950 creating build/bdist.linux-armv7l/wheel/htmd/clustering 2026-05-19T14:44:57,951 copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-05-19T14:44:57,954 copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-05-19T14:44:57,956 copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-05-19T14:44:57,958 copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,960 copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,961 copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,964 creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder 2026-05-19T14:44:57,965 copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-05-19T14:44:57,968 copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-05-19T14:44:57,971 copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-05-19T14:44:57,973 copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-05-19T14:44:57,975 copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-05-19T14:44:57,977 copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,979 copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-19T14:44:57,981 running install_egg_info 2026-05-19T14:44:57,993 running egg_info 2026-05-19T14:44:58,000 writing acellera_htmd.egg-info/PKG-INFO 2026-05-19T14:44:58,005 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-05-19T14:44:58,006 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-05-19T14:44:58,010 writing requirements to acellera_htmd.egg-info/requires.txt 2026-05-19T14:44:58,011 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-05-19T14:44:58,098 /tmp/pip-build-env-_tu1fui0/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-19T14:44:58,099 return get_active_overrides().subprocess_timeout 2026-05-19T14:44:58,105 listing git files failed - pretending there aren't any 2026-05-19T14:44:58,110 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-05-19T14:44:58,131 reading manifest template 'MANIFEST.in' 2026-05-19T14:44:58,159 no previously-included directories found matching 'htmd/data' 2026-05-19T14:44:58,161 no previously-included directories found matching '.github' 2026-05-19T14:44:58,162 no previously-included directories found matching 'doc' 2026-05-19T14:44:58,164 no previously-included directories found matching 'package' 2026-05-19T14:44:58,165 no previously-included directories found matching 'tests' 2026-05-19T14:44:58,167 no previously-included directories found matching 'tutorials' 2026-05-19T14:44:58,168 warning: no previously-included files found matching 'Makefile' 2026-05-19T14:44:58,169 adding license file 'LICENSE' 2026-05-19T14:44:58,193 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-05-19T14:44:58,195 Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.8.0-py3.11.egg-info 2026-05-19T14:44:58,208 running install_scripts 2026-05-19T14:44:58,220 creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.8.0.dist-info/WHEEL 2026-05-19T14:44:58,224 creating '/tmp/pip-wheel-tw5xudoh/.tmp-2inj4dv_/acellera_htmd-2.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-19T14:44:58,227 adding 'acellera_htmd-2.8.0.dist-info/licenses/LICENSE' 2026-05-19T14:44:58,230 adding 'htmd/__init__.py' 2026-05-19T14:44:58,231 adding 'htmd/config.py' 2026-05-19T14:44:58,233 adding 'htmd/decorators.py' 2026-05-19T14:44:58,234 adding 'htmd/dock.py' 2026-05-19T14:44:58,236 adding 'htmd/home.py' 2026-05-19T14:44:58,239 adding 'htmd/kinetics.py' 2026-05-19T14:44:58,240 adding 'htmd/latest.py' 2026-05-19T14:44:58,241 adding 'htmd/license.py' 2026-05-19T14:44:58,248 adding 'htmd/metricdata.py' 2026-05-19T14:44:58,250 adding 'htmd/metricdatagenerator.py' 2026-05-19T14:44:58,259 adding 'htmd/model.py' 2026-05-19T14:44:58,262 adding 'htmd/mutualinformation.py' 2026-05-19T14:44:58,263 adding 'htmd/parallelprogress.py' 2026-05-19T14:44:58,265 adding 'htmd/pathplanning.py' 2026-05-19T14:44:58,267 adding 'htmd/session.py' 2026-05-19T14:44:58,270 adding 'htmd/simlist.py' 2026-05-19T14:44:58,271 adding 'htmd/ui.py' 2026-05-19T14:44:58,272 adding 'htmd/units.py' 2026-05-19T14:44:58,274 adding 'htmd/util.py' 2026-05-19T14:44:58,275 adding 'htmd/versionwarnings.py' 2026-05-19T14:44:58,277 adding 'htmd/adaptive/__init__.py' 2026-05-19T14:44:58,280 adding 'htmd/adaptive/adaptive.py' 2026-05-19T14:44:58,283 adding 'htmd/adaptive/adaptivebandit.py' 2026-05-19T14:44:58,286 adding 'htmd/adaptive/adaptivegoal.py' 2026-05-19T14:44:58,288 adding 'htmd/adaptive/adaptivegoaleg.py' 2026-05-19T14:44:58,291 adding 'htmd/adaptive/adaptiverun.py' 2026-05-19T14:44:58,292 adding 'htmd/adaptive/util.py' 2026-05-19T14:44:58,294 adding 'htmd/builder/__init__.py' 2026-05-19T14:44:58,296 adding 'htmd/builder/_ambertools.py' 2026-05-19T14:44:58,305 adding 'htmd/builder/amber.py' 2026-05-19T14:44:58,307 adding 'htmd/builder/builder.py' 2026-05-19T14:44:58,312 adding 'htmd/builder/charmm.py' 2026-05-19T14:44:58,314 adding 'htmd/builder/ionize.py' 2026-05-19T14:44:58,316 adding 'htmd/builder/loopmodeler.py' 2026-05-19T14:44:58,326 adding 'htmd/builder/nonstandard.py' 2026-05-19T14:44:58,334 adding 'htmd/builder/openff.py' 2026-05-19T14:44:58,338 adding 'htmd/builder/solvate.py' 2026-05-19T14:44:58,340 adding 'htmd/clustering/__init__.py' 2026-05-19T14:44:58,342 adding 'htmd/clustering/kcenters.py' 2026-05-19T14:44:58,345 adding 'htmd/clustering/regular.py' 2026-05-19T14:44:58,347 adding 'htmd/membranebuilder/__init__.py' 2026-05-19T14:44:58,354 adding 'htmd/membranebuilder/build_membrane.py' 2026-05-19T14:44:58,357 adding 'htmd/membranebuilder/globalminimization.py' 2026-05-19T14:44:58,360 adding 'htmd/membranebuilder/ljfluid.py' 2026-05-19T14:44:58,362 adding 'htmd/membranebuilder/ringpenetration.py' 2026-05-19T14:44:58,365 adding 'htmd/projections/__init__.py' 2026-05-19T14:44:58,367 adding 'htmd/projections/gwpca.py' 2026-05-19T14:44:58,368 adding 'htmd/projections/kmeanstri.py' 2026-05-19T14:44:58,372 adding 'htmd/projections/metric.py' 2026-05-19T14:44:58,375 adding 'htmd/projections/tica.py' 2026-05-19T14:44:58,457 adding 'htmd/share/license-checker' 2026-05-19T14:44:58,488 adding 'htmd/share/builder/charmmlipid2amber.csv' 2026-05-19T14:44:58,492 adding 'htmd/share/builder/triala_capped.cif' 2026-05-19T14:44:58,493 adding 'htmd/share/builder/triala_capped.mmtf' 2026-05-19T14:44:58,496 adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod' 2026-05-19T14:44:58,497 adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi' 2026-05-19T14:44:58,499 adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod' 2026-05-19T14:44:58,501 adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi' 2026-05-19T14:44:58,502 adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod' 2026-05-19T14:44:58,504 adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi' 2026-05-19T14:44:58,505 adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod' 2026-05-19T14:44:58,507 adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi' 2026-05-19T14:44:58,508 adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod' 2026-05-19T14:44:58,510 adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi' 2026-05-19T14:44:58,511 adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod' 2026-05-19T14:44:58,512 adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi' 2026-05-19T14:44:58,514 adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod' 2026-05-19T14:44:58,516 adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi' 2026-05-19T14:44:58,517 adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod' 2026-05-19T14:44:58,519 adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi' 2026-05-19T14:44:58,520 adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod' 2026-05-19T14:44:58,522 adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi' 2026-05-19T14:44:58,523 adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod' 2026-05-19T14:44:58,526 adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi' 2026-05-19T14:44:58,527 adding 'htmd/share/builder/amberfiles/cofactors/README.txt' 2026-05-19T14:44:58,535 adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in' 2026-05-19T14:44:58,540 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod' 2026-05-19T14:44:58,541 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi' 2026-05-19T14:44:58,542 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod' 2026-05-19T14:44:58,544 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi' 2026-05-19T14:44:58,545 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod' 2026-05-19T14:44:58,546 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi' 2026-05-19T14:44:58,547 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod' 2026-05-19T14:44:58,549 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi' 2026-05-19T14:44:58,550 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod' 2026-05-19T14:44:58,551 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi' 2026-05-19T14:44:58,552 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod' 2026-05-19T14:44:58,554 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi' 2026-05-19T14:44:58,555 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod' 2026-05-19T14:44:58,557 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi' 2026-05-19T14:44:58,558 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod' 2026-05-19T14:44:58,559 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi' 2026-05-19T14:44:58,560 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod' 2026-05-19T14:44:58,562 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi' 2026-05-19T14:44:58,563 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod' 2026-05-19T14:44:58,565 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi' 2026-05-19T14:44:58,566 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod' 2026-05-19T14:44:58,567 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi' 2026-05-19T14:44:58,568 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod' 2026-05-19T14:44:58,570 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi' 2026-05-19T14:44:58,571 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod' 2026-05-19T14:44:58,572 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi' 2026-05-19T14:44:58,573 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod' 2026-05-19T14:44:58,575 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi' 2026-05-19T14:44:58,576 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod' 2026-05-19T14:44:58,577 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi' 2026-05-19T14:44:58,579 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod' 2026-05-19T14:44:58,580 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi' 2026-05-19T14:44:58,581 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod' 2026-05-19T14:44:58,583 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi' 2026-05-19T14:44:58,584 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod' 2026-05-19T14:44:58,585 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi' 2026-05-19T14:44:58,587 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod' 2026-05-19T14:44:58,588 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi' 2026-05-19T14:44:58,589 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod' 2026-05-19T14:44:58,590 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi' 2026-05-19T14:44:58,591 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod' 2026-05-19T14:44:58,593 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi' 2026-05-19T14:44:58,596 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod' 2026-05-19T14:44:58,598 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi' 2026-05-19T14:44:58,599 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod' 2026-05-19T14:44:58,600 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi' 2026-05-19T14:44:58,601 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod' 2026-05-19T14:44:58,603 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi' 2026-05-19T14:44:58,604 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod' 2026-05-19T14:44:58,605 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi' 2026-05-19T14:44:58,606 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod' 2026-05-19T14:44:58,608 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi' 2026-05-19T14:44:58,609 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod' 2026-05-19T14:44:58,610 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi' 2026-05-19T14:44:58,611 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod' 2026-05-19T14:44:58,613 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi' 2026-05-19T14:44:58,614 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod' 2026-05-19T14:44:58,615 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi' 2026-05-19T14:44:58,616 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod' 2026-05-19T14:44:58,617 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi' 2026-05-19T14:44:58,619 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod' 2026-05-19T14:44:58,620 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi' 2026-05-19T14:44:58,621 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod' 2026-05-19T14:44:58,622 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi' 2026-05-19T14:44:58,624 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod' 2026-05-19T14:44:58,625 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi' 2026-05-19T14:44:58,626 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod' 2026-05-19T14:44:58,628 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi' 2026-05-19T14:44:58,629 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod' 2026-05-19T14:44:58,631 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi' 2026-05-19T14:44:58,632 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod' 2026-05-19T14:44:58,633 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi' 2026-05-19T14:44:58,635 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod' 2026-05-19T14:44:58,636 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi' 2026-05-19T14:44:58,637 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod' 2026-05-19T14:44:58,639 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi' 2026-05-19T14:44:58,640 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod' 2026-05-19T14:44:58,641 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi' 2026-05-19T14:44:58,643 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod' 2026-05-19T14:44:58,644 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi' 2026-05-19T14:44:58,645 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod' 2026-05-19T14:44:58,647 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi' 2026-05-19T14:44:58,648 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod' 2026-05-19T14:44:58,650 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi' 2026-05-19T14:44:58,651 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod' 2026-05-19T14:44:58,652 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi' 2026-05-19T14:44:58,653 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod' 2026-05-19T14:44:58,654 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi' 2026-05-19T14:44:58,655 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod' 2026-05-19T14:44:58,657 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi' 2026-05-19T14:44:58,658 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod' 2026-05-19T14:44:58,659 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi' 2026-05-19T14:44:58,660 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod' 2026-05-19T14:44:58,662 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi' 2026-05-19T14:44:58,663 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod' 2026-05-19T14:44:58,664 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi' 2026-05-19T14:44:58,665 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod' 2026-05-19T14:44:58,667 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi' 2026-05-19T14:44:58,668 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod' 2026-05-19T14:44:58,669 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi' 2026-05-19T14:44:58,670 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod' 2026-05-19T14:44:58,672 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi' 2026-05-19T14:44:58,673 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod' 2026-05-19T14:44:58,674 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi' 2026-05-19T14:44:58,675 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod' 2026-05-19T14:44:58,677 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi' 2026-05-19T14:44:58,678 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod' 2026-05-19T14:44:58,679 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi' 2026-05-19T14:44:58,680 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod' 2026-05-19T14:44:58,682 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi' 2026-05-19T14:44:58,683 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod' 2026-05-19T14:44:58,684 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi' 2026-05-19T14:44:58,685 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod' 2026-05-19T14:44:58,687 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi' 2026-05-19T14:44:58,688 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod' 2026-05-19T14:44:58,689 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi' 2026-05-19T14:44:58,691 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod' 2026-05-19T14:44:58,692 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi' 2026-05-19T14:44:58,693 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod' 2026-05-19T14:44:58,695 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi' 2026-05-19T14:44:58,696 adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt' 2026-05-19T14:44:58,697 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod' 2026-05-19T14:44:58,699 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi' 2026-05-19T14:44:58,700 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod' 2026-05-19T14:44:58,702 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi' 2026-05-19T14:44:58,703 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod' 2026-05-19T14:44:58,704 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi' 2026-05-19T14:44:58,705 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod' 2026-05-19T14:44:58,707 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi' 2026-05-19T14:44:58,708 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod' 2026-05-19T14:44:58,709 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi' 2026-05-19T14:44:58,731 adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in' 2026-05-19T14:44:58,733 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt' 2026-05-19T14:44:58,735 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod' 2026-05-19T14:44:58,740 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib' 2026-05-19T14:44:58,741 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in' 2026-05-19T14:44:58,743 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log' 2026-05-19T14:44:58,744 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15' 2026-05-19T14:44:58,747 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod' 2026-05-19T14:44:58,749 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi' 2026-05-19T14:44:58,750 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod' 2026-05-19T14:44:58,751 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi' 2026-05-19T14:44:58,752 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod' 2026-05-19T14:44:58,754 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi' 2026-05-19T14:44:58,755 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod' 2026-05-19T14:44:58,756 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi' 2026-05-19T14:44:58,758 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod' 2026-05-19T14:44:58,759 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi' 2026-05-19T14:44:58,760 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod' 2026-05-19T14:44:58,762 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi' 2026-05-19T14:44:58,763 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod' 2026-05-19T14:44:58,764 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi' 2026-05-19T14:44:58,765 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod' 2026-05-19T14:44:58,767 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi' 2026-05-19T14:44:58,768 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod' 2026-05-19T14:44:58,769 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi' 2026-05-19T14:44:58,770 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod' 2026-05-19T14:44:58,772 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi' 2026-05-19T14:44:58,773 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod' 2026-05-19T14:44:58,774 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi' 2026-05-19T14:44:58,776 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod' 2026-05-19T14:44:58,777 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi' 2026-05-19T14:44:58,778 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod' 2026-05-19T14:44:58,779 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi' 2026-05-19T14:44:58,781 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod' 2026-05-19T14:44:58,782 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi' 2026-05-19T14:44:58,783 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod' 2026-05-19T14:44:58,785 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi' 2026-05-19T14:44:58,786 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod' 2026-05-19T14:44:58,788 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi' 2026-05-19T14:44:58,789 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod' 2026-05-19T14:44:58,790 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi' 2026-05-19T14:44:58,791 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod' 2026-05-19T14:44:58,793 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi' 2026-05-19T14:44:58,794 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod' 2026-05-19T14:44:58,796 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi' 2026-05-19T14:44:58,797 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod' 2026-05-19T14:44:58,798 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi' 2026-05-19T14:44:58,800 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod' 2026-05-19T14:44:58,801 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi' 2026-05-19T14:44:58,803 adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt' 2026-05-19T14:44:58,804 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod' 2026-05-19T14:44:58,805 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi' 2026-05-19T14:44:58,806 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod' 2026-05-19T14:44:58,808 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi' 2026-05-19T14:44:58,816 adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in' 2026-05-19T14:44:58,818 adding 'htmd/share/builder/caps/ACE.cif' 2026-05-19T14:44:58,819 adding 'htmd/share/builder/caps/ACE.pdb' 2026-05-19T14:44:58,821 adding 'htmd/share/builder/caps/NHE.pdb' 2026-05-19T14:44:58,822 adding 'htmd/share/builder/caps/NME.cif' 2026-05-19T14:44:58,823 adding 'htmd/share/builder/caps/NME.pdb' 2026-05-19T14:44:58,825 adding 'htmd/share/builder/charmmfiles/Makefile' 2026-05-19T14:44:58,826 adding 'htmd/share/builder/charmmfiles/README.md' 2026-05-19T14:44:58,842 adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm' 2026-05-19T14:44:58,856 adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm' 2026-05-19T14:44:58,859 adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm' 2026-05-19T14:44:58,874 adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm' 2026-05-19T14:44:58,962 adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm' 2026-05-19T14:44:58,971 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm' 2026-05-19T14:44:58,975 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm' 2026-05-19T14:44:58,983 adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm' 2026-05-19T14:44:58,998 adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm' 2026-05-19T14:44:59,001 adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm' 2026-05-19T14:44:59,003 adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str' 2026-05-19T14:44:59,081 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str' 2026-05-19T14:44:59,090 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str' 2026-05-19T14:44:59,221 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str' 2026-05-19T14:44:59,249 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str' 2026-05-19T14:44:59,261 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str' 2026-05-19T14:44:59,264 adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str' 2026-05-19T14:44:59,302 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str' 2026-05-19T14:44:59,335 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str' 2026-05-19T14:44:59,443 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str' 2026-05-19T14:44:59,449 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str' 2026-05-19T14:44:59,462 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str' 2026-05-19T14:44:59,469 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str' 2026-05-19T14:44:59,562 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str' 2026-05-19T14:44:59,587 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str' 2026-05-19T14:44:59,607 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str' 2026-05-19T14:44:59,699 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str' 2026-05-19T14:44:59,710 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str' 2026-05-19T14:44:59,975 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str' 2026-05-19T14:45:00,093 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str' 2026-05-19T14:45:00,156 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str' 2026-05-19T14:45:00,172 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str' 2026-05-19T14:45:00,180 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str' 2026-05-19T14:45:00,197 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str' 2026-05-19T14:45:00,207 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str' 2026-05-19T14:45:00,215 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str' 2026-05-19T14:45:00,218 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str' 2026-05-19T14:45:00,219 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str' 2026-05-19T14:45:00,221 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str' 2026-05-19T14:45:00,222 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str' 2026-05-19T14:45:00,224 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str' 2026-05-19T14:45:00,237 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str' 2026-05-19T14:45:00,263 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str' 2026-05-19T14:45:00,283 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str' 2026-05-19T14:45:00,289 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str' 2026-05-19T14:45:00,419 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str' 2026-05-19T14:45:00,557 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str' 2026-05-19T14:45:00,566 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str' 2026-05-19T14:45:00,569 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str' 2026-05-19T14:45:00,581 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str' 2026-05-19T14:45:00,606 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str' 2026-05-19T14:45:00,609 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str' 2026-05-19T14:45:00,612 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str' 2026-05-19T14:45:00,615 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str' 2026-05-19T14:45:00,626 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str' 2026-05-19T14:45:00,825 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str' 2026-05-19T14:45:00,846 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str' 2026-05-19T14:45:00,851 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str' 2026-05-19T14:45:00,859 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str' 2026-05-19T14:45:00,869 adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf' 2026-05-19T14:45:00,878 adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf' 2026-05-19T14:45:00,885 adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf' 2026-05-19T14:45:00,910 adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf' 2026-05-19T14:45:01,216 adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf' 2026-05-19T14:45:01,295 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf' 2026-05-19T14:45:01,345 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf' 2026-05-19T14:45:01,352 adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf' 2026-05-19T14:45:01,361 adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf' 2026-05-19T14:45:01,363 adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf' 2026-05-19T14:45:01,366 adding 'htmd/share/membranebuilder/lipids/lipiddb.csv' 2026-05-19T14:45:01,368 adding 'htmd/share/membranebuilder/lipids/chl1/chl1.cif' 2026-05-19T14:45:01,371 adding 'htmd/share/membranebuilder/lipids/dapa/dapa.cif' 2026-05-19T14:45:01,374 adding 'htmd/share/membranebuilder/lipids/dapc/dapc.cif' 2026-05-19T14:45:01,377 adding 'htmd/share/membranebuilder/lipids/dape/dape.cif' 2026-05-19T14:45:01,379 adding 'htmd/share/membranebuilder/lipids/dapg/dapg.cif' 2026-05-19T14:45:01,382 adding 'htmd/share/membranebuilder/lipids/daps/daps.cif' 2026-05-19T14:45:01,385 adding 'htmd/share/membranebuilder/lipids/dlpa/dlpa.cif' 2026-05-19T14:45:01,387 adding 'htmd/share/membranebuilder/lipids/dlpc/dlpc.cif' 2026-05-19T14:45:01,389 adding 'htmd/share/membranebuilder/lipids/dlpe/dlpe.cif' 2026-05-19T14:45:01,392 adding 'htmd/share/membranebuilder/lipids/dlpg/dlpg.cif' 2026-05-19T14:45:01,394 adding 'htmd/share/membranebuilder/lipids/dlps/dlps.cif' 2026-05-19T14:45:01,397 adding 'htmd/share/membranebuilder/lipids/dmpa/dmpa.cif' 2026-05-19T14:45:01,399 adding 'htmd/share/membranebuilder/lipids/dmpc/dmpc.cif' 2026-05-19T14:45:01,402 adding 'htmd/share/membranebuilder/lipids/dmpe/dmpe.cif' 2026-05-19T14:45:01,404 adding 'htmd/share/membranebuilder/lipids/dmpg/dmpg.cif' 2026-05-19T14:45:01,407 adding 'htmd/share/membranebuilder/lipids/dmps/dmps.cif' 2026-05-19T14:45:01,410 adding 'htmd/share/membranebuilder/lipids/dopa/dopa.cif' 2026-05-19T14:45:01,413 adding 'htmd/share/membranebuilder/lipids/dopc/dopc.cif' 2026-05-19T14:45:01,415 adding 'htmd/share/membranebuilder/lipids/dope/dope.cif' 2026-05-19T14:45:01,418 adding 'htmd/share/membranebuilder/lipids/dopg/dopg.cif' 2026-05-19T14:45:01,421 adding 'htmd/share/membranebuilder/lipids/dops/dops.cif' 2026-05-19T14:45:01,424 adding 'htmd/share/membranebuilder/lipids/dppa/dppa.cif' 2026-05-19T14:45:01,426 adding 'htmd/share/membranebuilder/lipids/dppc/dppc.cif' 2026-05-19T14:45:01,429 adding 'htmd/share/membranebuilder/lipids/dppe/dppe.cif' 2026-05-19T14:45:01,432 adding 'htmd/share/membranebuilder/lipids/dppg/dppg.cif' 2026-05-19T14:45:01,435 adding 'htmd/share/membranebuilder/lipids/dpps/dpps.cif' 2026-05-19T14:45:01,437 adding 'htmd/share/membranebuilder/lipids/dspa/dspa.cif' 2026-05-19T14:45:01,440 adding 'htmd/share/membranebuilder/lipids/dspc/dspc.cif' 2026-05-19T14:45:01,443 adding 'htmd/share/membranebuilder/lipids/dspe/dspe.cif' 2026-05-19T14:45:01,446 adding 'htmd/share/membranebuilder/lipids/dspg/dspg.cif' 2026-05-19T14:45:01,449 adding 'htmd/share/membranebuilder/lipids/dsps/dsps.cif' 2026-05-19T14:45:01,452 adding 'htmd/share/membranebuilder/lipids/popa/popa.cif' 2026-05-19T14:45:01,455 adding 'htmd/share/membranebuilder/lipids/popc/popc.cif' 2026-05-19T14:45:01,457 adding 'htmd/share/membranebuilder/lipids/pope/pope.cif' 2026-05-19T14:45:01,460 adding 'htmd/share/membranebuilder/lipids/popg/popg.cif' 2026-05-19T14:45:01,463 adding 'htmd/share/membranebuilder/lipids/pops/pops.cif' 2026-05-19T14:45:01,466 adding 'htmd/share/membranebuilder/lipids/sdpa/sdpa.cif' 2026-05-19T14:45:01,469 adding 'htmd/share/membranebuilder/lipids/sdpc/sdpc.cif' 2026-05-19T14:45:01,472 adding 'htmd/share/membranebuilder/lipids/sdpe/sdpe.cif' 2026-05-19T14:45:01,475 adding 'htmd/share/membranebuilder/lipids/sdpg/sdpg.cif' 2026-05-19T14:45:01,478 adding 'htmd/share/membranebuilder/lipids/sdps/sdps.cif' 2026-05-19T14:45:01,769 adding 'htmd/share/solvate/wat.pdb' 2026-05-19T14:45:01,784 adding 'acellera_htmd-2.8.0.dist-info/METADATA' 2026-05-19T14:45:01,785 adding 'acellera_htmd-2.8.0.dist-info/WHEEL' 2026-05-19T14:45:01,785 adding 'acellera_htmd-2.8.0.dist-info/entry_points.txt' 2026-05-19T14:45:01,786 adding 'acellera_htmd-2.8.0.dist-info/top_level.txt' 2026-05-19T14:45:01,792 adding 'acellera_htmd-2.8.0.dist-info/RECORD' 2026-05-19T14:45:01,857 removing build/bdist.linux-armv7l/wheel 2026-05-19T14:45:02,084 Building wheel for acellera-htmd (pyproject.toml): finished with status 'done' 2026-05-19T14:45:02,184 Created wheel for acellera-htmd: filename=acellera_htmd-2.8.0-py3-none-any.whl size=4411262 sha256=b0ab4a0cee81b5c3aef0623994246ecaea0eeb2dd7bb8a717b425a58d11abd6c 2026-05-19T14:45:02,186 Stored in directory: /tmp/pip-ephem-wheel-cache-t9006iyi/wheels/49/b8/b4/6a69845b7c80decf10248303ab48bb7fb873a8049b4d553fb6 2026-05-19T14:45:02,213 Successfully built acellera-htmd 2026-05-19T14:45:02,322 Removed build tracker: '/tmp/pip-build-tracker-h1itjl4g'