2026-05-20T09:52:21,309 Created temporary directory: /tmp/pip-ephem-wheel-cache-3m1yuepq 2026-05-20T09:52:21,311 Created temporary directory: /tmp/pip-build-tracker-nzbjx_06 2026-05-20T09:52:21,312 Initialized build tracking at /tmp/pip-build-tracker-nzbjx_06 2026-05-20T09:52:21,313 Created build tracker: /tmp/pip-build-tracker-nzbjx_06 2026-05-20T09:52:21,313 Entered build tracker: /tmp/pip-build-tracker-nzbjx_06 2026-05-20T09:52:21,314 Created temporary directory: /tmp/pip-wheel-8201spew 2026-05-20T09:52:21,317 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-20T09:52:21,320 Created temporary directory: /tmp/pip-ephem-wheel-cache-oy_0r0s7 2026-05-20T09:52:21,345 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-20T09:52:21,348 2 location(s) to search for versions of bionify: 2026-05-20T09:52:21,348 * https://pypi.org/simple/bionify/ 2026-05-20T09:52:21,348 * https://www.piwheels.org/simple/bionify/ 2026-05-20T09:52:21,349 Fetching project page and analyzing links: https://pypi.org/simple/bionify/ 2026-05-20T09:52:21,350 Getting page https://pypi.org/simple/bionify/ 2026-05-20T09:52:21,351 Found index url https://pypi.org/simple 2026-05-20T09:52:21,507 Fetched page https://pypi.org/simple/bionify/ as application/vnd.pypi.simple.v1+json 2026-05-20T09:52:21,510 Skipping link: No binaries permitted for bionify: https://files.pythonhosted.org/packages/2d/6b/cb8db03200cc6b06c13f61c4970b4336be817c23faf3c286c7eed67201b2/bionify-0.1.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/bionify/) (requires-python:>=3.9) 2026-05-20T09:52:21,511 Found link https://files.pythonhosted.org/packages/ca/50/87a4306da30781a5c3bc59624810b6f06f3c358f3c53f00c13168aa1fb63/bionify-0.1.0.tar.gz (from https://pypi.org/simple/bionify/) (requires-python:>=3.9), version: 0.1.0 2026-05-20T09:52:21,512 Skipping link: No binaries permitted for bionify: https://files.pythonhosted.org/packages/e6/ab/6703ddb340e12c9bcf58b4e8c95c8e909bb993e81a0719e5d9136868fe09/bionify-0.1.1-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/bionify/) (requires-python:>=3.9) 2026-05-20T09:52:21,512 Found link https://files.pythonhosted.org/packages/98/c8/35e5d007b86f3c407d883510b3a2659597c8be555cdca9af1d2ec6262aea/bionify-0.1.1.tar.gz (from https://pypi.org/simple/bionify/) (requires-python:>=3.9), version: 0.1.1 2026-05-20T09:52:21,513 Skipping link: No binaries permitted for bionify: https://files.pythonhosted.org/packages/41/f5/4dd1edb49e49e667ff82b1148e5b00773f9a86a04ad3921aeb233eb8aeb6/bionify-0.1.2-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/bionify/) (requires-python:>=3.9) 2026-05-20T09:52:21,514 Found link https://files.pythonhosted.org/packages/83/61/8e3edc8f9cb2380fc02432a0dbcc56c6bf12f2aecd5fe029237148185ca9/bionify-0.1.2.tar.gz (from https://pypi.org/simple/bionify/) (requires-python:>=3.9), version: 0.1.2 2026-05-20T09:52:21,515 Skipping link: No binaries permitted for bionify: https://files.pythonhosted.org/packages/c4/a7/84532b99f1cbb5b1c36eb464133c88d83605d1e85e5fc98f8f184631af44/bionify-0.1.3-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/bionify/) (requires-python:>=3.9) 2026-05-20T09:52:21,516 Found link https://files.pythonhosted.org/packages/27/8c/eef68408567deea13a0dcd794817eee6456ab09990204d8de163c4be6343/bionify-0.1.3.tar.gz (from https://pypi.org/simple/bionify/) (requires-python:>=3.9), version: 0.1.3 2026-05-20T09:52:21,517 Fetching project page and analyzing links: https://www.piwheels.org/simple/bionify/ 2026-05-20T09:52:21,517 Getting page https://www.piwheels.org/simple/bionify/ 2026-05-20T09:52:21,518 Found index url https://www.piwheels.org/simple 2026-05-20T09:52:26,594 Fetched page https://www.piwheels.org/simple/bionify/ as text/html 2026-05-20T09:52:26,598 Skipping link: No binaries permitted for bionify: https://www.piwheels.org/simple/bionify/bionify-0.1.0-cp311-cp311-linux_armv6l.whl#sha256=ab26b8725ab9f37fd036fd0d69d78a74dd170b611b1f12bc9b9f0f90a776631c (from https://www.piwheels.org/simple/bionify/) (requires-python:>=3.9) 2026-05-20T09:52:26,599 Skipping link: No binaries permitted for bionify: https://www.piwheels.org/simple/bionify/bionify-0.1.0-cp311-cp311-linux_armv7l.whl#sha256=ab26b8725ab9f37fd036fd0d69d78a74dd170b611b1f12bc9b9f0f90a776631c (from https://www.piwheels.org/simple/bionify/) (requires-python:>=3.9) 2026-05-20T09:52:26,600 Skipping link: not a file: https://www.piwheels.org/simple/bionify/ 2026-05-20T09:52:26,601 Skipping link: not a file: https://pypi.org/simple/bionify/ 2026-05-20T09:52:26,647 Given no hashes to check 1 links for project 'bionify': discarding no candidates 2026-05-20T09:52:26,665 Collecting bionify==0.1.1 2026-05-20T09:52:26,668 Created temporary directory: /tmp/pip-unpack-ph1e5r39 2026-05-20T09:52:26,896 Downloading bionify-0.1.1.tar.gz (104 kB) 2026-05-20T09:52:27,010 Added bionify==0.1.1 from https://files.pythonhosted.org/packages/98/c8/35e5d007b86f3c407d883510b3a2659597c8be555cdca9af1d2ec6262aea/bionify-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-nzbjx_06' 2026-05-20T09:52:27,016 Created temporary directory: /tmp/pip-build-env-5i0i5mad 2026-05-20T09:52:27,021 Installing build dependencies: started 2026-05-20T09:52:27,022 Running command pip subprocess to install build dependencies 2026-05-20T09:52:28,183 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-20T09:52:28,627 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-20T09:52:28,649 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-20T09:52:33,487 Collecting scikit-build-core>=0.10 2026-05-20T09:52:33,488 Obtaining dependency information for scikit-build-core>=0.10 from https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.12.2-py3-none-any.whl.metadata 2026-05-20T09:52:33,509 Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.12.2-py3-none-any.whl.metadata (16 kB) 2026-05-20T09:52:33,522 Discarding https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.12.2-py3-none-any.whl#sha256=46d8a176f3b4d26308916fc087f8ea1b9f39070d59462a7376bad7f008e71a18 (from https://www.piwheels.org/simple/scikit-build-core/) (requires-python:>=3.8): Requested scikit-build-core>=0.10 from https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.12.2-py3-none-any.whl#sha256=46d8a176f3b4d26308916fc087f8ea1b9f39070d59462a7376bad7f008e71a18 has inconsistent Name: expected 'scikit-build-core', but metadata has 'scikit_build_core' 2026-05-20T09:52:33,548 Using cached scikit_build_core-0.12.2-py3-none-any.whl (192 kB) 2026-05-20T09:52:33,661 Collecting nanobind>=1.9.2 2026-05-20T09:52:33,662 Obtaining dependency information for nanobind>=1.9.2 from https://www.piwheels.org/simple/nanobind/nanobind-2.12.0-py3-none-any.whl.metadata 2026-05-20T09:52:33,678 Using cached https://www.piwheels.org/simple/nanobind/nanobind-2.12.0-py3-none-any.whl.metadata (1.8 kB) 2026-05-20T09:52:33,888 Collecting packaging>=23.2 2026-05-20T09:52:33,889 Obtaining dependency information for packaging>=23.2 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-20T09:52:33,904 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-20T09:52:34,025 Collecting pathspec>=0.12.0 2026-05-20T09:52:34,026 Obtaining dependency information for pathspec>=0.12.0 from https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl.metadata 2026-05-20T09:52:34,041 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl.metadata (14 kB) 2026-05-20T09:52:34,102 Using cached https://www.piwheels.org/simple/nanobind/nanobind-2.12.0-py3-none-any.whl (249 kB) 2026-05-20T09:52:34,175 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-20T09:52:34,194 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl (57 kB) 2026-05-20T09:52:34,226 Using cached https://www.piwheels.org/simple/nanobind/nanobind-2.12.0-py3-none-any.whl (249 kB) 2026-05-20T09:52:34,259 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-20T09:52:34,284 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl (57 kB) 2026-05-20T09:52:36,813 Installing collected packages: nanobind, pathspec, packaging, scikit-build-core 2026-05-20T09:52:38,183 Successfully installed nanobind-2.12.0 packaging-26.2 pathspec-1.1.1 scikit-build-core-0.12.2 2026-05-20T09:52:38,434 Installing build dependencies: finished with status 'done' 2026-05-20T09:52:38,441 Getting requirements to build wheel: started 2026-05-20T09:52:38,442 Running command Getting requirements to build wheel 2026-05-20T09:52:39,042 Getting requirements to build wheel: finished with status 'done' 2026-05-20T09:52:39,045 Created temporary directory: /tmp/pip-modern-metadata-r0gdv_8w 2026-05-20T09:52:39,047 Preparing metadata (pyproject.toml): started 2026-05-20T09:52:39,049 Running command Preparing metadata (pyproject.toml) 2026-05-20T09:52:39,738 *** scikit-build-core 0.12.2 using CMake 3.25.1 (metadata_wheel) 2026-05-20T09:52:39,845 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-20T09:52:39,850 Source in /tmp/pip-wheel-8201spew/bionify_4b74195413504791b776e16e58321a90 has version 0.1.1, which satisfies requirement bionify==0.1.1 from https://files.pythonhosted.org/packages/98/c8/35e5d007b86f3c407d883510b3a2659597c8be555cdca9af1d2ec6262aea/bionify-0.1.1.tar.gz 2026-05-20T09:52:39,851 Removed bionify==0.1.1 from https://files.pythonhosted.org/packages/98/c8/35e5d007b86f3c407d883510b3a2659597c8be555cdca9af1d2ec6262aea/bionify-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-nzbjx_06' 2026-05-20T09:52:39,856 Created temporary directory: /tmp/pip-unpack-xi2aizsg 2026-05-20T09:52:39,857 Building wheels for collected packages: bionify 2026-05-20T09:52:39,862 Created temporary directory: /tmp/pip-wheel-28g9v8a5 2026-05-20T09:52:39,862 Destination directory: /tmp/pip-wheel-28g9v8a5 2026-05-20T09:52:39,864 Building wheel for bionify (pyproject.toml): started 2026-05-20T09:52:39,866 Running command Building wheel for bionify (pyproject.toml) 2026-05-20T09:52:40,536 *** scikit-build-core 0.12.2 using CMake 3.25.1 (wheel) 2026-05-20T09:52:40,563 *** Configuring CMake... 2026-05-20T09:52:40,661 loading initial cache file build/cp311-cp311-linux_armv7l/CMakeInit.txt 2026-05-20T09:52:40,998 -- The CXX compiler identification is GNU 12.2.0 2026-05-20T09:52:41,055 -- Detecting CXX compiler ABI info 2026-05-20T09:52:41,382 -- Detecting CXX compiler ABI info - done 2026-05-20T09:52:41,421 -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabihf-g++ - skipped 2026-05-20T09:52:41,423 -- Detecting CXX compile features 2026-05-20T09:52:41,426 -- Detecting CXX compile features - done 2026-05-20T09:52:42,133 -- Found Python: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.9") found components: Interpreter Development.Module 2026-05-20T09:52:42,153 -- Configuring done 2026-05-20T09:52:42,193 -- Generating done 2026-05-20T09:52:42,236 -- Build files have been written to: /tmp/pip-wheel-8201spew/bionify_4b74195413504791b776e16e58321a90/build/cp311-cp311-linux_armv7l 2026-05-20T09:52:42,267 *** Building project with Ninja... 2026-05-20T09:52:49,559 [1/13] Building CXX object CMakeFiles/bionify_ext.dir/src/bionify_ext.cpp.o 2026-05-20T09:52:50,597 [2/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-5i0i5mad/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_internals.cpp.o 2026-05-20T09:52:52,459 [3/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-5i0i5mad/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_ndarray.cpp.o 2026-05-20T09:52:54,711 [4/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-5i0i5mad/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_func.cpp.o 2026-05-20T09:52:54,997 [5/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-5i0i5mad/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_enum.cpp.o 2026-05-20T09:52:58,747 [6/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-5i0i5mad/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_static_property.cpp.o 2026-05-20T09:53:00,237 [7/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-5i0i5mad/overlay/local/lib/python3.11/dist-packages/nanobind/src/error.cpp.o 2026-05-20T09:53:00,821 [8/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-5i0i5mad/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_type.cpp.o 2026-05-20T09:53:01,080 [9/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-5i0i5mad/overlay/local/lib/python3.11/dist-packages/nanobind/src/implicit.cpp.o 2026-05-20T09:53:01,628 [10/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-5i0i5mad/overlay/local/lib/python3.11/dist-packages/nanobind/src/trampoline.cpp.o 2026-05-20T09:53:02,202 [11/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-5i0i5mad/overlay/local/lib/python3.11/dist-packages/nanobind/src/common.cpp.o 2026-05-20T09:53:02,452 [12/13] Linking CXX static library libnanobind-static.a 2026-05-20T09:53:02,752 [13/13] Linking CXX shared module bionify_ext.cpython-311-arm-linux-gnueabihf.so 2026-05-20T09:53:02,758 *** Installing project into wheel... 2026-05-20T09:53:02,795 -- Install configuration: "Release" 2026-05-20T09:53:02,798 -- Installing: /tmp/tmpvfv8fsw0/wheel/platlib/bionify/bionify_ext.cpython-311-arm-linux-gnueabihf.so 2026-05-20T09:53:02,817 -- Installing: /tmp/tmpvfv8fsw0/wheel/platlib/bionify/__init__.py 2026-05-20T09:53:02,819 -- Installing: /tmp/tmpvfv8fsw0/wheel/platlib/bionify/_core.py 2026-05-20T09:53:02,822 -- Installing: /tmp/tmpvfv8fsw0/wheel/platlib/bionify/hook.py 2026-05-20T09:53:02,829 *** Making wheel... 2026-05-20T09:53:02,902 *** Created bionify-0.1.1-cp311-cp311-linux_armv7l.whl 2026-05-20T09:53:02,971 Building wheel for bionify (pyproject.toml): finished with status 'done' 2026-05-20T09:53:02,976 Created wheel for bionify: filename=bionify-0.1.1-cp311-cp311-linux_armv7l.whl size=35987 sha256=34b9a3c19a7cddb5fe6f00048619d57a8ef575fde30e30bc0f956382e9b4ad04 2026-05-20T09:53:02,977 Stored in directory: /tmp/pip-ephem-wheel-cache-oy_0r0s7/wheels/36/fc/6d/0f3c37bba1bbb2b0bf29996b1bb21872f685526bf8fbe2341b 2026-05-20T09:53:02,987 Successfully built bionify 2026-05-20T09:53:02,991 Removed build tracker: '/tmp/pip-build-tracker-nzbjx_06'