2026-05-22T13:14:11,024 Created temporary directory: /tmp/pip-ephem-wheel-cache-frtq2_hk 2026-05-22T13:14:11,026 Created temporary directory: /tmp/pip-build-tracker-51s9vu8j 2026-05-22T13:14:11,027 Initialized build tracking at /tmp/pip-build-tracker-51s9vu8j 2026-05-22T13:14:11,028 Created build tracker: /tmp/pip-build-tracker-51s9vu8j 2026-05-22T13:14:11,028 Entered build tracker: /tmp/pip-build-tracker-51s9vu8j 2026-05-22T13:14:11,029 Created temporary directory: /tmp/pip-wheel-8cc9v1ey 2026-05-22T13:14:11,032 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-22T13:14:11,035 Created temporary directory: /tmp/pip-ephem-wheel-cache-m812mc_r 2026-05-22T13:14:11,057 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-22T13:14:11,060 2 location(s) to search for versions of torchref: 2026-05-22T13:14:11,060 * https://pypi.org/simple/torchref/ 2026-05-22T13:14:11,060 * https://www.piwheels.org/simple/torchref/ 2026-05-22T13:14:11,061 Fetching project page and analyzing links: https://pypi.org/simple/torchref/ 2026-05-22T13:14:11,062 Getting page https://pypi.org/simple/torchref/ 2026-05-22T13:14:11,063 Found index url https://pypi.org/simple 2026-05-22T13:14:11,295 Fetched page https://pypi.org/simple/torchref/ as application/vnd.pypi.simple.v1+json 2026-05-22T13:14:11,300 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/64/ac/2604e364cc5df69ccdc7f3c9f0cdccaf9c51e96c4d622e64b508ed42d102/torchref-0.3.0-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9) 2026-05-22T13:14:11,301 Found link https://files.pythonhosted.org/packages/73/7f/9c1e4112b5dd16c6712d7a8542a20f84bfd290f42c79dbcc4124a4df4ec9/torchref-0.3.0.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.0 2026-05-22T13:14:11,301 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/2c/60/fa60e785ed08bc2e5a786869b7143e31881874cf9e87a83b7602322bb6e5/torchref-0.3.1-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9) 2026-05-22T13:14:11,302 Found link https://files.pythonhosted.org/packages/70/0e/584b23bda864347754d7b0c9fcced9ee05dc5f7d3424d8cfd74717b6bb2f/torchref-0.3.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.1 2026-05-22T13:14:11,303 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/e8/b3/f063b38c335c7b0c625fd7306e6b594e5ff453ab41b33317decaa6feadc3/torchref-0.3.2-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9) 2026-05-22T13:14:11,304 Found link https://files.pythonhosted.org/packages/da/78/277f71170bd394e88380562379e2fe3b292acd3eb6d95ce110671da4ef59/torchref-0.3.2.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.2 2026-05-22T13:14:11,305 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/fb/01/2471acb3667c71a9a0d2a93bdfdb998c35e85eea6487641b27ab99b7d0f0/torchref-0.4.1-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,306 Found link https://files.pythonhosted.org/packages/16/bd/cfbdc266a4fe7c8868b100eda000f82419609e89158bda8524efa51748be/torchref-0.4.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.4.1 2026-05-22T13:14:11,307 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/15/37/ed32c8184a2173783ba9429a9a0b2932172539ba3cb7b23f3ca26dfba1fd/torchref-0.4.2-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,308 Found link https://files.pythonhosted.org/packages/ae/0d/52864d8146269e718c1cb7b47a20f899e4035f19e0ccb7e5d59315f65bb4/torchref-0.4.2.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.4.2 2026-05-22T13:14:11,309 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/a7/3a/847415e01c63f1d7d71316d541be7464628096ed37f5fc9020d147463263/torchref-0.4.3-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,310 Found link https://files.pythonhosted.org/packages/cc/11/709f9abb6ad3da0752480f1a77de7d3c311393d6193f89d6ce18cc7d5099/torchref-0.4.3.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.4.3 2026-05-22T13:14:11,310 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/1b/b8/36df377748164e20a46356722963af74331445792bdbf08a0cdf1dbdbbdd/torchref-0.5.0-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,311 Found link https://files.pythonhosted.org/packages/25/f4/c18b875b712da914d708badea4ed1c2312935dc84d561b799c337185cf6e/torchref-0.5.0.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.0 2026-05-22T13:14:11,312 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/26/a0/7aceb00564e0dabc8d2cf6412cf7dba08013709a3ec915d33e40eabf72e0/torchref-0.5.1-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,313 Found link https://files.pythonhosted.org/packages/c8/0e/388f73407fc7bfe62c48f8e6983fd0b167b0739c260c2e08953ecaaac1bb/torchref-0.5.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.1 2026-05-22T13:14:11,313 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/3b/ad/f555bfcd4d9fdf1e3d542b593b2bebadf467e161cf643ff0c263db2cfcc3/torchref-0.5.2-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,314 Found link https://files.pythonhosted.org/packages/4d/d1/961979d80eaa39ceac37b9b8b641c3e2b4076705b775b3bcdcb1054f3642/torchref-0.5.2.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.2 2026-05-22T13:14:11,315 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/89/f8/40a59b5f087446e5b723954f28d67000cacc83cee4d0c6f22923641ffbbc/torchref-0.5.3-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,316 Found link https://files.pythonhosted.org/packages/b2/d6/db2c7811699816ae29d052b1a38f04ac57bb15b612ee962cfa4563e372cb/torchref-0.5.3.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.3 2026-05-22T13:14:11,317 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/05/8e/af744824d6f0bbcb480a1f40240f8d63417e2458910f63195f02b915fc51/torchref-0.5.3.1-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,318 Found link https://files.pythonhosted.org/packages/7e/7d/a3cbaa3b7e0c5d56fca55123e6729a0af5b6cc2fefb6a74398757ff572f0/torchref-0.5.3.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.3.1 2026-05-22T13:14:11,319 Fetching project page and analyzing links: https://www.piwheels.org/simple/torchref/ 2026-05-22T13:14:11,319 Getting page https://www.piwheels.org/simple/torchref/ 2026-05-22T13:14:11,321 Found index url https://www.piwheels.org/simple 2026-05-22T13:14:11,509 Fetched page https://www.piwheels.org/simple/torchref/ as text/html 2026-05-22T13:14:11,513 Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.5.3-py3-none-any.whl#sha256=46e6766130f0e3c77ae9734e25a717a2ca237cf1f3e3bb23a12a528ddd0b0848 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,514 Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.5.2-py3-none-any.whl#sha256=243d4c01af453def03a1e0667e20d3a8dc738f6af546aa60605b8a99369e41e3 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,514 Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.5.1-py3-none-any.whl#sha256=c9b0bd6e0eba9eb14b81da89125965a0bb458251fd153ba4216811b24c993227 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,515 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.5.0-py3-none-any.whl#sha256=81412a83cb1884393fe067281c4c70763169b28f13a642e80110fdc7eb65b9d2 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,516 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.4.3-py3-none-any.whl#sha256=3224a4185d64c6f2b269ee377bc5c0f6dacf3a13898fd11e73a727a462a2d878 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,516 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.4.2-py3-none-any.whl#sha256=c4c77a7e34aad8245da2d04a76477bdf30f94ca67cd531f721e4bf47ee67114a (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,517 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.4.1-py3-none-any.whl#sha256=51e933f2f0edf7f44aa74d08f32f7530006300c4b6def2437f9257d02b3e175e (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-22T13:14:11,517 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.3.2-py3-none-any.whl#sha256=30e0c5727c1872459a9dcff4416e224ff7486dea2f43a6c20dab66a307492093 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.9) 2026-05-22T13:14:11,518 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.3.1-py3-none-any.whl#sha256=25deb48a634dda8c799c2d7c32d9749bf327e976900dbd2a5fedf435ee5e921f (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.9) 2026-05-22T13:14:11,518 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.3.0-py3-none-any.whl#sha256=3032f506e2c816e7e7638e151ed6e70bf0f6b0213e92f8f790dce96c53c0d65f (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.9) 2026-05-22T13:14:11,519 Skipping link: not a file: https://www.piwheels.org/simple/torchref/ 2026-05-22T13:14:11,520 Skipping link: not a file: https://pypi.org/simple/torchref/ 2026-05-22T13:14:11,541 Given no hashes to check 1 links for project 'torchref': discarding no candidates 2026-05-22T13:14:11,560 Collecting torchref==0.5.3.1 2026-05-22T13:14:11,563 Created temporary directory: /tmp/pip-unpack-plg2lfh2 2026-05-22T13:14:11,799 Downloading torchref-0.5.3.1.tar.gz (3.0 MB) 2026-05-22T13:14:13,171 Added torchref==0.5.3.1 from https://files.pythonhosted.org/packages/7e/7d/a3cbaa3b7e0c5d56fca55123e6729a0af5b6cc2fefb6a74398757ff572f0/torchref-0.5.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-51s9vu8j' 2026-05-22T13:14:13,179 Created temporary directory: /tmp/pip-build-env-f1fr4jtm 2026-05-22T13:14:13,185 Installing build dependencies: started 2026-05-22T13:14:13,187 Running command pip subprocess to install build dependencies 2026-05-22T13:14:14,348 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-22T13:14:14,826 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-22T13:14:14,849 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-22T13:14:16,705 Collecting setuptools>=42 2026-05-22T13:14:16,706 Obtaining dependency information for setuptools>=42 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-22T13:14:16,721 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-22T13:14:16,960 Collecting wheel 2026-05-22T13:14:16,962 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-05-22T13:14:16,975 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-05-22T13:14:17,160 Collecting packaging>=24.0 2026-05-22T13:14:17,161 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-22T13:14:17,173 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-22T13:14:17,364 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-22T13:14:17,383 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-22T13:14:17,470 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-22T13:14:17,504 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-22T13:14:17,541 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-22T13:14:17,633 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-22T13:14:20,388 Installing collected packages: setuptools, packaging, wheel 2026-05-22T13:14:24,001 Creating /tmp/pip-build-env-f1fr4jtm/overlay/local/bin 2026-05-22T13:14:24,004 changing mode of /tmp/pip-build-env-f1fr4jtm/overlay/local/bin/wheel to 755 2026-05-22T13:14:24,025 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-05-22T13:14:24,314 Installing build dependencies: finished with status 'done' 2026-05-22T13:14:24,320 Getting requirements to build wheel: started 2026-05-22T13:14:24,321 Running command Getting requirements to build wheel 2026-05-22T13:14:25,055 running egg_info 2026-05-22T13:14:25,062 writing torchref.egg-info/PKG-INFO 2026-05-22T13:14:25,070 writing dependency_links to torchref.egg-info/dependency_links.txt 2026-05-22T13:14:25,072 writing entry points to torchref.egg-info/entry_points.txt 2026-05-22T13:14:25,077 writing requirements to torchref.egg-info/requires.txt 2026-05-22T13:14:25,079 writing top-level names to torchref.egg-info/top_level.txt 2026-05-22T13:14:25,169 reading manifest file 'torchref.egg-info/SOURCES.txt' 2026-05-22T13:14:25,185 adding license file 'LICENSE' 2026-05-22T13:14:25,199 writing manifest file 'torchref.egg-info/SOURCES.txt' 2026-05-22T13:14:25,299 Getting requirements to build wheel: finished with status 'done' 2026-05-22T13:14:25,303 Created temporary directory: /tmp/pip-modern-metadata-_x142ydp 2026-05-22T13:14:25,306 Preparing metadata (pyproject.toml): started 2026-05-22T13:14:25,307 Running command Preparing metadata (pyproject.toml) 2026-05-22T13:14:25,968 running dist_info 2026-05-22T13:14:25,979 creating /tmp/pip-modern-metadata-_x142ydp/torchref.egg-info 2026-05-22T13:14:25,980 writing /tmp/pip-modern-metadata-_x142ydp/torchref.egg-info/PKG-INFO 2026-05-22T13:14:25,988 writing dependency_links to /tmp/pip-modern-metadata-_x142ydp/torchref.egg-info/dependency_links.txt 2026-05-22T13:14:25,990 writing entry points to /tmp/pip-modern-metadata-_x142ydp/torchref.egg-info/entry_points.txt 2026-05-22T13:14:25,994 writing requirements to /tmp/pip-modern-metadata-_x142ydp/torchref.egg-info/requires.txt 2026-05-22T13:14:25,996 writing top-level names to /tmp/pip-modern-metadata-_x142ydp/torchref.egg-info/top_level.txt 2026-05-22T13:14:25,997 writing manifest file '/tmp/pip-modern-metadata-_x142ydp/torchref.egg-info/SOURCES.txt' 2026-05-22T13:14:26,073 reading manifest file '/tmp/pip-modern-metadata-_x142ydp/torchref.egg-info/SOURCES.txt' 2026-05-22T13:14:26,075 adding license file 'LICENSE' 2026-05-22T13:14:26,085 writing manifest file '/tmp/pip-modern-metadata-_x142ydp/torchref.egg-info/SOURCES.txt' 2026-05-22T13:14:26,086 creating '/tmp/pip-modern-metadata-_x142ydp/torchref-0.5.3.1.dist-info' 2026-05-22T13:14:26,215 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-22T13:14:26,220 Source in /tmp/pip-wheel-8cc9v1ey/torchref_57686c67d1cd46fba06554c2210f2a14 has version 0.5.3.1, which satisfies requirement torchref==0.5.3.1 from https://files.pythonhosted.org/packages/7e/7d/a3cbaa3b7e0c5d56fca55123e6729a0af5b6cc2fefb6a74398757ff572f0/torchref-0.5.3.1.tar.gz 2026-05-22T13:14:26,221 Removed torchref==0.5.3.1 from https://files.pythonhosted.org/packages/7e/7d/a3cbaa3b7e0c5d56fca55123e6729a0af5b6cc2fefb6a74398757ff572f0/torchref-0.5.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-51s9vu8j' 2026-05-22T13:14:26,227 Created temporary directory: /tmp/pip-unpack-2ci4acug 2026-05-22T13:14:26,228 Building wheels for collected packages: torchref 2026-05-22T13:14:26,232 Created temporary directory: /tmp/pip-wheel-jn9nt5_j 2026-05-22T13:14:26,233 Destination directory: /tmp/pip-wheel-jn9nt5_j 2026-05-22T13:14:26,235 Building wheel for torchref (pyproject.toml): started 2026-05-22T13:14:26,236 Running command Building wheel for torchref (pyproject.toml) 2026-05-22T13:14:26,880 running bdist_wheel 2026-05-22T13:14:26,897 running build 2026-05-22T13:14:26,898 running build_py 2026-05-22T13:14:26,904 creating build/lib/torchref 2026-05-22T13:14:26,906 copying torchref/config.py -> build/lib/torchref 2026-05-22T13:14:26,909 copying torchref/__init__.py -> build/lib/torchref 2026-05-22T13:14:26,911 copying torchref/_bootstrap.py -> build/lib/torchref 2026-05-22T13:14:26,913 creating build/lib/torchref/scripts 2026-05-22T13:14:26,914 copying torchref/scripts/generate_scattering_table.py -> build/lib/torchref/scripts 2026-05-22T13:14:26,917 copying torchref/scripts/__init__.py -> build/lib/torchref/scripts 2026-05-22T13:14:26,920 creating build/lib/torchref/model 2026-05-22T13:14:26,921 copying torchref/model/sf_ds.py -> build/lib/torchref/model 2026-05-22T13:14:26,924 copying torchref/model/internal_coordinates.py -> build/lib/torchref/model 2026-05-22T13:14:26,928 copying torchref/model/closed_segmented_internal_coordinates.py -> build/lib/torchref/model 2026-05-22T13:14:26,931 copying torchref/model/sf_fft.py -> build/lib/torchref/model 2026-05-22T13:14:26,934 copying torchref/model/model.py -> build/lib/torchref/model 2026-05-22T13:14:26,938 copying torchref/model/model_collection.py -> build/lib/torchref/model 2026-05-22T13:14:26,941 copying torchref/model/mixed_model.py -> build/lib/torchref/model 2026-05-22T13:14:26,944 copying torchref/model/model_ft.py -> build/lib/torchref/model 2026-05-22T13:14:26,947 copying torchref/model/__init__.py -> build/lib/torchref/model 2026-05-22T13:14:26,949 copying torchref/model/parameter_wrappers.py -> build/lib/torchref/model 2026-05-22T13:14:26,953 copying torchref/model/segmented_internal_coordinates.py -> build/lib/torchref/model 2026-05-22T13:14:26,957 creating build/lib/torchref/symmetry 2026-05-22T13:14:26,959 copying torchref/symmetry/symmetry.py -> build/lib/torchref/symmetry 2026-05-22T13:14:26,961 copying torchref/symmetry/map_symmetry_interpolation.py -> build/lib/torchref/symmetry 2026-05-22T13:14:26,963 copying torchref/symmetry/map_symmetry.py -> build/lib/torchref/symmetry 2026-05-22T13:14:26,966 copying torchref/symmetry/cell.py -> build/lib/torchref/symmetry 2026-05-22T13:14:26,968 copying torchref/symmetry/grid_utils.py -> build/lib/torchref/symmetry 2026-05-22T13:14:26,971 copying torchref/symmetry/spacegroup.py -> build/lib/torchref/symmetry 2026-05-22T13:14:26,974 copying torchref/symmetry/__init__.py -> build/lib/torchref/symmetry 2026-05-22T13:14:26,976 copying torchref/symmetry/reciprocal_symmetry.py -> build/lib/torchref/symmetry 2026-05-22T13:14:26,980 creating build/lib/torchref/io 2026-05-22T13:14:26,980 copying torchref/io/cif_readers.py -> build/lib/torchref/io 2026-05-22T13:14:26,986 copying torchref/io/mtz.py -> build/lib/torchref/io 2026-05-22T13:14:26,989 copying torchref/io/pdb.py -> build/lib/torchref/io 2026-05-22T13:14:26,991 copying torchref/io/cif.py -> build/lib/torchref/io 2026-05-22T13:14:26,994 copying torchref/io/metadata.py -> build/lib/torchref/io 2026-05-22T13:14:26,997 copying torchref/io/ihm_mapping.py -> build/lib/torchref/io 2026-05-22T13:14:26,999 copying torchref/io/ihm.py -> build/lib/torchref/io 2026-05-22T13:14:27,002 copying torchref/io/__init__.py -> build/lib/torchref/io 2026-05-22T13:14:27,004 copying torchref/io/data_router.py -> build/lib/torchref/io 2026-05-22T13:14:27,007 creating build/lib/torchref/kinetic 2026-05-22T13:14:27,008 copying torchref/kinetic/targets.py -> build/lib/torchref/kinetic 2026-05-22T13:14:27,011 copying torchref/kinetic/refinement.py -> build/lib/torchref/kinetic 2026-05-22T13:14:27,014 copying torchref/kinetic/occupancies.py -> build/lib/torchref/kinetic 2026-05-22T13:14:27,017 copying torchref/kinetic/__init__.py -> build/lib/torchref/kinetic 2026-05-22T13:14:27,019 copying torchref/kinetic/kinetics.py -> build/lib/torchref/kinetic 2026-05-22T13:14:27,022 creating build/lib/torchref/refinement 2026-05-22T13:14:27,023 copying torchref/refinement/loss_state.py -> build/lib/torchref/refinement 2026-05-22T13:14:27,026 copying torchref/refinement/base_refinement.py -> build/lib/torchref/refinement 2026-05-22T13:14:27,029 copying torchref/refinement/logger.py -> build/lib/torchref/refinement 2026-05-22T13:14:27,032 copying torchref/refinement/__init__.py -> build/lib/torchref/refinement 2026-05-22T13:14:27,034 copying torchref/refinement/lbfgs_refinement.py -> build/lib/torchref/refinement 2026-05-22T13:14:27,037 creating build/lib/torchref/base 2026-05-22T13:14:27,038 copying torchref/base/get_scattering_factor_torch.py -> build/lib/torchref/base 2026-05-22T13:14:27,041 copying torchref/base/math_torch.py -> build/lib/torchref/base 2026-05-22T13:14:27,043 copying torchref/base/CCTBX_related.py -> build/lib/torchref/base 2026-05-22T13:14:27,045 copying torchref/base/french_wilson.py -> build/lib/torchref/base 2026-05-22T13:14:27,048 copying torchref/base/math_numpy.py -> build/lib/torchref/base 2026-05-22T13:14:27,051 copying torchref/base/__init__.py -> build/lib/torchref/base 2026-05-22T13:14:27,054 creating build/lib/torchref/scaling 2026-05-22T13:14:27,055 copying torchref/scaling/scaler_base.py -> build/lib/torchref/scaling 2026-05-22T13:14:27,058 copying torchref/scaling/scaler.py -> build/lib/torchref/scaling 2026-05-22T13:14:27,061 copying torchref/scaling/solvent.py -> build/lib/torchref/scaling 2026-05-22T13:14:27,064 copying torchref/scaling/__init__.py -> build/lib/torchref/scaling 2026-05-22T13:14:27,066 copying torchref/scaling/collection_scaler.py -> build/lib/torchref/scaling 2026-05-22T13:14:27,069 creating build/lib/torchref/alignment 2026-05-22T13:14:27,070 copying torchref/alignment/jax_subpixel_peaks.py -> build/lib/torchref/alignment 2026-05-22T13:14:27,072 copying torchref/alignment/ball_transform.py -> build/lib/torchref/alignment 2026-05-22T13:14:27,076 copying torchref/alignment/sampling.py -> build/lib/torchref/alignment 2026-05-22T13:14:27,078 copying torchref/alignment/translation.py -> build/lib/torchref/alignment 2026-05-22T13:14:27,081 copying torchref/alignment/distributions.py -> build/lib/torchref/alignment 2026-05-22T13:14:27,083 copying torchref/alignment/transform.py -> build/lib/torchref/alignment 2026-05-22T13:14:27,087 copying torchref/alignment/pipeline.py -> build/lib/torchref/alignment 2026-05-22T13:14:27,089 copying torchref/alignment/clashscore.py -> build/lib/torchref/alignment 2026-05-22T13:14:27,092 copying torchref/alignment/rigid_body.py -> build/lib/torchref/alignment 2026-05-22T13:14:27,095 copying torchref/alignment/__init__.py -> build/lib/torchref/alignment 2026-05-22T13:14:27,098 creating build/lib/torchref/maps 2026-05-22T13:14:27,099 copying torchref/maps/difference_map.py -> build/lib/torchref/maps 2026-05-22T13:14:27,101 copying torchref/maps/map.py -> build/lib/torchref/maps 2026-05-22T13:14:27,103 copying torchref/maps/__init__.py -> build/lib/torchref/maps 2026-05-22T13:14:27,106 creating build/lib/torchref/cli 2026-05-22T13:14:27,107 copying torchref/cli/_common.py -> build/lib/torchref/cli 2026-05-22T13:14:27,110 copying torchref/cli/strip_altlocs.py -> build/lib/torchref/cli 2026-05-22T13:14:27,111 copying torchref/cli/mtz2map.py -> build/lib/torchref/cli 2026-05-22T13:14:27,114 copying torchref/cli/add_metadata.py -> build/lib/torchref/cli 2026-05-22T13:14:27,116 copying torchref/cli/validate_ded.py -> build/lib/torchref/cli 2026-05-22T13:14:27,119 copying torchref/cli/collection_difference_refine.py -> build/lib/torchref/cli 2026-05-22T13:14:27,122 copying torchref/cli/phased_difference_map.py -> build/lib/torchref/cli 2026-05-22T13:14:27,124 copying torchref/cli/refine.py -> build/lib/torchref/cli 2026-05-22T13:14:27,126 copying torchref/cli/__init__.py -> build/lib/torchref/cli 2026-05-22T13:14:27,129 creating build/lib/torchref/utils 2026-05-22T13:14:27,130 copying torchref/utils/autograd_ops.py -> build/lib/torchref/utils 2026-05-22T13:14:27,132 copying torchref/utils/device_resolution.py -> build/lib/torchref/utils 2026-05-22T13:14:27,134 copying torchref/utils/timing.py -> build/lib/torchref/utils 2026-05-22T13:14:27,136 copying torchref/utils/gradnorm.py -> build/lib/torchref/utils 2026-05-22T13:14:27,138 copying torchref/utils/device_mixin.py -> build/lib/torchref/utils 2026-05-22T13:14:27,140 copying torchref/utils/utils.py -> build/lib/torchref/utils 2026-05-22T13:14:27,144 copying torchref/utils/caching.py -> build/lib/torchref/utils 2026-05-22T13:14:27,146 copying torchref/utils/loss_validation.py -> build/lib/torchref/utils 2026-05-22T13:14:27,149 copying torchref/utils/pse.py -> build/lib/torchref/utils 2026-05-22T13:14:27,151 copying torchref/utils/hyperparameters.py -> build/lib/torchref/utils 2026-05-22T13:14:27,153 copying torchref/utils/autograd_introspection.py -> build/lib/torchref/utils 2026-05-22T13:14:27,155 copying torchref/utils/__init__.py -> build/lib/torchref/utils 2026-05-22T13:14:27,157 copying torchref/utils/serialization.py -> build/lib/torchref/utils 2026-05-22T13:14:27,159 copying torchref/utils/stats.py -> build/lib/torchref/utils 2026-05-22T13:14:27,161 copying torchref/utils/debug_utils.py -> build/lib/torchref/utils 2026-05-22T13:14:27,165 creating build/lib/torchref/restraints 2026-05-22T13:14:27,166 copying torchref/restraints/library.py -> build/lib/torchref/restraints 2026-05-22T13:14:27,168 copying torchref/restraints/restraints_helper.py -> build/lib/torchref/restraints 2026-05-22T13:14:27,171 copying torchref/restraints/ramachandran.py -> build/lib/torchref/restraints 2026-05-22T13:14:27,173 copying torchref/restraints/neighbor_search.py -> build/lib/torchref/restraints 2026-05-22T13:14:27,176 copying torchref/restraints/restraints.py -> build/lib/torchref/restraints 2026-05-22T13:14:27,180 copying torchref/restraints/hydrogen_topology.py -> build/lib/torchref/restraints 2026-05-22T13:14:27,183 copying torchref/restraints/__init__.py -> build/lib/torchref/restraints 2026-05-22T13:14:27,185 copying torchref/restraints/builders.py -> build/lib/torchref/restraints 2026-05-22T13:14:27,189 copying torchref/restraints/builders_fast.py -> build/lib/torchref/restraints 2026-05-22T13:14:27,193 copying torchref/restraints/builders_numba.py -> build/lib/torchref/restraints 2026-05-22T13:14:27,202 creating build/lib/torchref/io/datasets 2026-05-22T13:14:27,203 copying torchref/io/datasets/fcalc_data.py -> build/lib/torchref/io/datasets 2026-05-22T13:14:27,206 copying torchref/io/datasets/reflection_data.py -> build/lib/torchref/io/datasets 2026-05-22T13:14:27,211 copying torchref/io/datasets/collection.py -> build/lib/torchref/io/datasets 2026-05-22T13:14:27,214 copying torchref/io/datasets/base.py -> build/lib/torchref/io/datasets 2026-05-22T13:14:27,216 copying torchref/io/datasets/__init__.py -> build/lib/torchref/io/datasets 2026-05-22T13:14:27,218 creating build/lib/torchref/refinement/targets 2026-05-22T13:14:27,220 copying torchref/refinement/targets/occupancy_floor_diagnostic.py -> build/lib/torchref/refinement/targets 2026-05-22T13:14:27,222 copying torchref/refinement/targets/realspace.py -> build/lib/torchref/refinement/targets 2026-05-22T13:14:27,225 copying torchref/refinement/targets/difference.py -> build/lib/torchref/refinement/targets 2026-05-22T13:14:27,229 copying torchref/refinement/targets/combined.py -> build/lib/torchref/refinement/targets 2026-05-22T13:14:27,231 copying torchref/refinement/targets/similarity.py -> build/lib/torchref/refinement/targets 2026-05-22T13:14:27,234 copying torchref/refinement/targets/sampled_ml_phase_target.py -> build/lib/torchref/refinement/targets 2026-05-22T13:14:27,237 copying torchref/refinement/targets/base.py -> build/lib/torchref/refinement/targets 2026-05-22T13:14:27,239 copying torchref/refinement/targets/amber_target.py -> build/lib/torchref/refinement/targets 2026-05-22T13:14:27,243 copying torchref/refinement/targets/__init__.py -> build/lib/torchref/refinement/targets 2026-05-22T13:14:27,245 copying torchref/refinement/targets/forcefield_target.py -> build/lib/torchref/refinement/targets 2026-05-22T13:14:27,247 creating build/lib/torchref/refinement/weighting 2026-05-22T13:14:27,248 copying torchref/refinement/weighting/policy_weighting.py -> build/lib/torchref/refinement/weighting 2026-05-22T13:14:27,251 copying torchref/refinement/weighting/random_weighting.py -> build/lib/torchref/refinement/weighting 2026-05-22T13:14:27,254 copying torchref/refinement/weighting/es_policy_training.py -> build/lib/torchref/refinement/weighting 2026-05-22T13:14:27,257 copying torchref/refinement/weighting/component_weighting.py -> build/lib/torchref/refinement/weighting 2026-05-22T13:14:27,259 copying torchref/refinement/weighting/__init__.py -> build/lib/torchref/refinement/weighting 2026-05-22T13:14:27,261 copying torchref/refinement/weighting/base_weighting.py -> build/lib/torchref/refinement/weighting 2026-05-22T13:14:27,264 creating build/lib/torchref/refinement/optimizers 2026-05-22T13:14:27,265 copying torchref/refinement/optimizers/adam_noise.py -> build/lib/torchref/refinement/optimizers 2026-05-22T13:14:27,267 copying torchref/refinement/optimizers/simulated_annealing.py -> build/lib/torchref/refinement/optimizers 2026-05-22T13:14:27,270 copying torchref/refinement/optimizers/internal_coord_sa.py -> build/lib/torchref/refinement/optimizers 2026-05-22T13:14:27,273 copying torchref/refinement/optimizers/langevin_sa.py -> build/lib/torchref/refinement/optimizers 2026-05-22T13:14:27,275 copying torchref/refinement/optimizers/exploratory_lbfgs.py -> build/lib/torchref/refinement/optimizers 2026-05-22T13:14:27,278 copying torchref/refinement/optimizers/momentum_sa.py -> build/lib/torchref/refinement/optimizers 2026-05-22T13:14:27,280 copying torchref/refinement/optimizers/__init__.py -> build/lib/torchref/refinement/optimizers 2026-05-22T13:14:27,283 creating build/lib/torchref/refinement/targets/adp 2026-05-22T13:14:27,284 copying torchref/refinement/targets/adp/entropy.py -> build/lib/torchref/refinement/targets/adp 2026-05-22T13:14:27,286 copying torchref/refinement/targets/adp/locality.py -> build/lib/torchref/refinement/targets/adp 2026-05-22T13:14:27,289 copying torchref/refinement/targets/adp/rigid_bond.py -> build/lib/torchref/refinement/targets/adp 2026-05-22T13:14:27,291 copying torchref/refinement/targets/adp/similarity.py -> build/lib/torchref/refinement/targets/adp 2026-05-22T13:14:27,293 copying torchref/refinement/targets/adp/scaler_log_scale.py -> build/lib/torchref/refinement/targets/adp 2026-05-22T13:14:27,295 copying torchref/refinement/targets/adp/scaler_u.py -> build/lib/torchref/refinement/targets/adp 2026-05-22T13:14:27,297 copying torchref/refinement/targets/adp/base.py -> build/lib/torchref/refinement/targets/adp 2026-05-22T13:14:27,299 copying torchref/refinement/targets/adp/__init__.py -> build/lib/torchref/refinement/targets/adp 2026-05-22T13:14:27,302 creating build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,303 copying torchref/refinement/targets/geometry/non_bonded_h.py -> build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,305 copying torchref/refinement/targets/geometry/ramachandran.py -> build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,307 copying torchref/refinement/targets/geometry/bonds.py -> build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,309 copying torchref/refinement/targets/geometry/non_bonded.py -> build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,312 copying torchref/refinement/targets/geometry/planarity.py -> build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,314 copying torchref/refinement/targets/geometry/torsions.py -> build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,317 copying torchref/refinement/targets/geometry/base.py -> build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,319 copying torchref/refinement/targets/geometry/chiral.py -> build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,321 copying torchref/refinement/targets/geometry/__init__.py -> build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,323 copying torchref/refinement/targets/geometry/angles.py -> build/lib/torchref/refinement/targets/geometry 2026-05-22T13:14:27,326 creating build/lib/torchref/refinement/targets/xray 2026-05-22T13:14:27,327 copying torchref/refinement/targets/xray/maximum_likelihood.py -> build/lib/torchref/refinement/targets/xray 2026-05-22T13:14:27,329 copying torchref/refinement/targets/xray/least_squares.py -> build/lib/torchref/refinement/targets/xray 2026-05-22T13:14:27,331 copying torchref/refinement/targets/xray/gaussian.py -> build/lib/torchref/refinement/targets/xray 2026-05-22T13:14:27,333 copying torchref/refinement/targets/xray/bhattacharyya.py -> build/lib/torchref/refinement/targets/xray 2026-05-22T13:14:27,335 copying torchref/refinement/targets/xray/base.py -> build/lib/torchref/refinement/targets/xray 2026-05-22T13:14:27,338 copying torchref/refinement/targets/xray/__init__.py -> build/lib/torchref/refinement/targets/xray 2026-05-22T13:14:27,341 creating build/lib/torchref/base/targets 2026-05-22T13:14:27,342 copying torchref/base/targets/_common.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,344 copying torchref/base/targets/xray_bhattacharyya.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,345 copying torchref/base/targets/adp.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,348 copying torchref/base/targets/xray_ml.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,350 copying torchref/base/targets/bond.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,352 copying torchref/base/targets/ramachandran.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,354 copying torchref/base/targets/torsion.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,356 copying torchref/base/targets/angle.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,358 copying torchref/base/targets/xray_ls.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,359 copying torchref/base/targets/xray_gaussian.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,361 copying torchref/base/targets/planarity.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,363 copying torchref/base/targets/_dispatch.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,365 copying torchref/base/targets/chiral.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,367 copying torchref/base/targets/nonbonded.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,370 copying torchref/base/targets/__init__.py -> build/lib/torchref/base/targets 2026-05-22T13:14:27,372 creating build/lib/torchref/base/coordinates 2026-05-22T13:14:27,373 copying torchref/base/coordinates/transforms_torch.py -> build/lib/torchref/base/coordinates 2026-05-22T13:14:27,375 copying torchref/base/coordinates/__init__.py -> build/lib/torchref/base/coordinates 2026-05-22T13:14:27,377 copying torchref/base/coordinates/periodic_boundary.py -> build/lib/torchref/base/coordinates 2026-05-22T13:14:27,379 copying torchref/base/coordinates/transforms_numpy.py -> build/lib/torchref/base/coordinates 2026-05-22T13:14:27,381 creating build/lib/torchref/base/reciprocal 2026-05-22T13:14:27,382 copying torchref/base/reciprocal/symmetry.py -> build/lib/torchref/base/reciprocal 2026-05-22T13:14:27,385 copying torchref/base/reciprocal/hkl.py -> build/lib/torchref/base/reciprocal 2026-05-22T13:14:27,387 copying torchref/base/reciprocal/interpolation.py -> build/lib/torchref/base/reciprocal 2026-05-22T13:14:27,389 copying torchref/base/reciprocal/grid_operations.py -> build/lib/torchref/base/reciprocal 2026-05-22T13:14:27,392 copying torchref/base/reciprocal/__init__.py -> build/lib/torchref/base/reciprocal 2026-05-22T13:14:27,394 copying torchref/base/reciprocal/basis.py -> build/lib/torchref/base/reciprocal 2026-05-22T13:14:27,396 creating build/lib/torchref/base/scattering 2026-05-22T13:14:27,397 copying torchref/base/scattering/scattering_table.py -> build/lib/torchref/base/scattering 2026-05-22T13:14:27,400 copying torchref/base/scattering/anomalous_table.py -> build/lib/torchref/base/scattering 2026-05-22T13:14:27,402 copying torchref/base/scattering/__init__.py -> build/lib/torchref/base/scattering 2026-05-22T13:14:27,404 copying torchref/base/scattering/itc92.py -> build/lib/torchref/base/scattering 2026-05-22T13:14:27,407 creating build/lib/torchref/base/kernels 2026-05-22T13:14:27,408 copying torchref/base/kernels/separable_triton_kernel.py -> build/lib/torchref/base/kernels 2026-05-22T13:14:27,411 copying torchref/base/kernels/jit_kernel_vectorized_add_to_map.py -> build/lib/torchref/base/kernels 2026-05-22T13:14:27,414 copying torchref/base/kernels/triton_kernel.py -> build/lib/torchref/base/kernels 2026-05-22T13:14:27,417 copying torchref/base/kernels/cpu_scatter.py -> build/lib/torchref/base/kernels 2026-05-22T13:14:27,419 copying torchref/base/kernels/optimized_ops.py -> build/lib/torchref/base/kernels 2026-05-22T13:14:27,422 copying torchref/base/kernels/__init__.py -> build/lib/torchref/base/kernels 2026-05-22T13:14:27,424 creating build/lib/torchref/base/metrics 2026-05-22T13:14:27,425 copying torchref/base/metrics/rfactor.py -> build/lib/torchref/base/metrics 2026-05-22T13:14:27,428 copying torchref/base/metrics/loss.py -> build/lib/torchref/base/metrics 2026-05-22T13:14:27,430 copying torchref/base/metrics/__init__.py -> build/lib/torchref/base/metrics 2026-05-22T13:14:27,433 creating build/lib/torchref/base/fourier 2026-05-22T13:14:27,434 copying torchref/base/fourier/grid.py -> build/lib/torchref/base/fourier 2026-05-22T13:14:27,436 copying torchref/base/fourier/fft.py -> build/lib/torchref/base/fourier 2026-05-22T13:14:27,438 copying torchref/base/fourier/__init__.py -> build/lib/torchref/base/fourier 2026-05-22T13:14:27,440 creating build/lib/torchref/base/electron_density 2026-05-22T13:14:27,442 copying torchref/base/electron_density/voxel_utils.py -> build/lib/torchref/base/electron_density 2026-05-22T13:14:27,444 copying torchref/base/electron_density/main.py -> build/lib/torchref/base/electron_density 2026-05-22T13:14:27,447 copying torchref/base/electron_density/map_building.py -> build/lib/torchref/base/electron_density 2026-05-22T13:14:27,450 copying torchref/base/electron_density/solvent_mask.py -> build/lib/torchref/base/electron_density 2026-05-22T13:14:27,453 copying torchref/base/electron_density/__init__.py -> build/lib/torchref/base/electron_density 2026-05-22T13:14:27,455 creating build/lib/torchref/base/alignment 2026-05-22T13:14:27,456 copying torchref/base/alignment/scoring.py -> build/lib/torchref/base/alignment 2026-05-22T13:14:27,459 copying torchref/base/alignment/rotation.py -> build/lib/torchref/base/alignment 2026-05-22T13:14:27,462 copying torchref/base/alignment/__init__.py -> build/lib/torchref/base/alignment 2026-05-22T13:14:27,465 copying torchref/base/alignment/superposition.py -> build/lib/torchref/base/alignment 2026-05-22T13:14:27,468 copying torchref/base/alignment/normalization.py -> build/lib/torchref/base/alignment 2026-05-22T13:14:27,471 creating build/lib/torchref/base/direct_summation 2026-05-22T13:14:27,473 copying torchref/base/direct_summation/isotropic.py -> build/lib/torchref/base/direct_summation 2026-05-22T13:14:27,476 copying torchref/base/direct_summation/corrections.py -> build/lib/torchref/base/direct_summation 2026-05-22T13:14:27,478 copying torchref/base/direct_summation/anisotropic.py -> build/lib/torchref/base/direct_summation 2026-05-22T13:14:27,481 copying torchref/base/direct_summation/__init__.py -> build/lib/torchref/base/direct_summation 2026-05-22T13:14:27,484 creating build/lib/torchref/base/chain_closure 2026-05-22T13:14:27,485 copying torchref/base/chain_closure/backbone_utils.py -> build/lib/torchref/base/chain_closure 2026-05-22T13:14:27,489 copying torchref/base/chain_closure/closure.py -> build/lib/torchref/base/chain_closure 2026-05-22T13:14:27,492 copying torchref/base/chain_closure/__init__.py -> build/lib/torchref/base/chain_closure 2026-05-22T13:14:27,495 creating build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,497 copying torchref/base/targets/triton/xray_bhattacharyya.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,500 copying torchref/base/targets/triton/_dihedral.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,502 copying torchref/base/targets/triton/xray_ml.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,505 copying torchref/base/targets/triton/bond.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,508 copying torchref/base/targets/triton/ramachandran.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,511 copying torchref/base/targets/triton/place_hydrogens.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,515 copying torchref/base/targets/triton/torsion.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,518 copying torchref/base/targets/triton/angle.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,521 copying torchref/base/targets/triton/xray_ls.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,524 copying torchref/base/targets/triton/xray_gaussian.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,527 copying torchref/base/targets/triton/planarity.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,530 copying torchref/base/targets/triton/adp_simu.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,532 copying torchref/base/targets/triton/chiral.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,535 copying torchref/base/targets/triton/nonbonded.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,538 copying torchref/base/targets/triton/__init__.py -> build/lib/torchref/base/targets/triton 2026-05-22T13:14:27,541 running egg_info 2026-05-22T13:14:27,554 writing torchref.egg-info/PKG-INFO 2026-05-22T13:14:27,562 writing dependency_links to torchref.egg-info/dependency_links.txt 2026-05-22T13:14:27,564 writing entry points to torchref.egg-info/entry_points.txt 2026-05-22T13:14:27,568 writing requirements to torchref.egg-info/requires.txt 2026-05-22T13:14:27,569 writing top-level names to torchref.egg-info/top_level.txt 2026-05-22T13:14:27,633 reading manifest file 'torchref.egg-info/SOURCES.txt' 2026-05-22T13:14:27,648 adding license file 'LICENSE' 2026-05-22T13:14:27,661 writing manifest file 'torchref.egg-info/SOURCES.txt' 2026-05-22T13:14:27,699 creating build/lib/torchref/data 2026-05-22T13:14:27,700 copying torchref/data/atomic_vdw_radii.csv -> build/lib/torchref/data 2026-05-22T13:14:27,703 copying torchref/data/itc92_scattering_factors.pt -> build/lib/torchref/data 2026-05-22T13:14:27,706 copying torchref/data/rama_nll_surfaces.pt -> build/lib/torchref/data 2026-05-22T13:14:27,763 creating build/lib/torchref/data/monomer_library/c 2026-05-22T13:14:27,765 copying torchref/data/monomer_library/c/CYS.cif -> build/lib/torchref/data/monomer_library/c 2026-05-22T13:14:27,767 copying torchref/data/monomer_library/c/C.cif -> build/lib/torchref/data/monomer_library/c 2026-05-22T13:14:27,770 creating build/lib/torchref/data/monomer_library/d 2026-05-22T13:14:27,771 copying torchref/data/monomer_library/d/DA.cif -> build/lib/torchref/data/monomer_library/d 2026-05-22T13:14:27,774 copying torchref/data/monomer_library/d/DT.cif -> build/lib/torchref/data/monomer_library/d 2026-05-22T13:14:27,777 copying torchref/data/monomer_library/d/DC.cif -> build/lib/torchref/data/monomer_library/d 2026-05-22T13:14:27,781 copying torchref/data/monomer_library/d/DG.cif -> build/lib/torchref/data/monomer_library/d 2026-05-22T13:14:27,784 creating build/lib/torchref/data/monomer_library/p 2026-05-22T13:14:27,785 copying torchref/data/monomer_library/p/PHE.cif -> build/lib/torchref/data/monomer_library/p 2026-05-22T13:14:27,788 copying torchref/data/monomer_library/p/PRO.cif -> build/lib/torchref/data/monomer_library/p 2026-05-22T13:14:27,790 copying torchref/data/monomer_library/p/PTR.cif -> build/lib/torchref/data/monomer_library/p 2026-05-22T13:14:27,793 creating build/lib/torchref/data/monomer_library/t 2026-05-22T13:14:27,794 copying torchref/data/monomer_library/t/TYR.cif -> build/lib/torchref/data/monomer_library/t 2026-05-22T13:14:27,797 copying torchref/data/monomer_library/t/TRP.cif -> build/lib/torchref/data/monomer_library/t 2026-05-22T13:14:27,800 copying torchref/data/monomer_library/t/THR.cif -> build/lib/torchref/data/monomer_library/t 2026-05-22T13:14:27,803 copying torchref/data/monomer_library/t/TPO.cif -> build/lib/torchref/data/monomer_library/t 2026-05-22T13:14:27,805 creating build/lib/torchref/data/monomer_library/a 2026-05-22T13:14:27,806 copying torchref/data/monomer_library/a/ALA.cif -> build/lib/torchref/data/monomer_library/a 2026-05-22T13:14:27,809 copying torchref/data/monomer_library/a/ARG.cif -> build/lib/torchref/data/monomer_library/a 2026-05-22T13:14:27,812 copying torchref/data/monomer_library/a/ASP.cif -> build/lib/torchref/data/monomer_library/a 2026-05-22T13:14:27,815 copying torchref/data/monomer_library/a/ASN.cif -> build/lib/torchref/data/monomer_library/a 2026-05-22T13:14:27,817 copying torchref/data/monomer_library/a/A.cif -> build/lib/torchref/data/monomer_library/a 2026-05-22T13:14:27,821 creating build/lib/torchref/data/monomer_library/g 2026-05-22T13:14:27,822 copying torchref/data/monomer_library/g/G.cif -> build/lib/torchref/data/monomer_library/g 2026-05-22T13:14:27,825 copying torchref/data/monomer_library/g/GLU.cif -> build/lib/torchref/data/monomer_library/g 2026-05-22T13:14:27,828 copying torchref/data/monomer_library/g/GLY.cif -> build/lib/torchref/data/monomer_library/g 2026-05-22T13:14:27,830 copying torchref/data/monomer_library/g/GLN.cif -> build/lib/torchref/data/monomer_library/g 2026-05-22T13:14:27,833 creating build/lib/torchref/data/monomer_library/l 2026-05-22T13:14:27,834 copying torchref/data/monomer_library/l/LYS.cif -> build/lib/torchref/data/monomer_library/l 2026-05-22T13:14:27,838 copying torchref/data/monomer_library/l/LEU.cif -> build/lib/torchref/data/monomer_library/l 2026-05-22T13:14:27,840 creating build/lib/torchref/data/monomer_library/s 2026-05-22T13:14:27,842 copying torchref/data/monomer_library/s/SEP.cif -> build/lib/torchref/data/monomer_library/s 2026-05-22T13:14:27,844 copying torchref/data/monomer_library/s/SER.cif -> build/lib/torchref/data/monomer_library/s 2026-05-22T13:14:27,847 creating build/lib/torchref/data/monomer_library/m 2026-05-22T13:14:27,848 copying torchref/data/monomer_library/m/MSE.cif -> build/lib/torchref/data/monomer_library/m 2026-05-22T13:14:27,851 copying torchref/data/monomer_library/m/MET.cif -> build/lib/torchref/data/monomer_library/m 2026-05-22T13:14:27,854 creating build/lib/torchref/data/monomer_library/i 2026-05-22T13:14:27,855 copying torchref/data/monomer_library/i/ILE.cif -> build/lib/torchref/data/monomer_library/i 2026-05-22T13:14:27,857 creating build/lib/torchref/data/monomer_library/h 2026-05-22T13:14:27,858 copying torchref/data/monomer_library/h/HIS.cif -> build/lib/torchref/data/monomer_library/h 2026-05-22T13:14:27,861 copying torchref/data/monomer_library/h/HYP.cif -> build/lib/torchref/data/monomer_library/h 2026-05-22T13:14:27,864 copying torchref/data/monomer_library/h/HOH.cif -> build/lib/torchref/data/monomer_library/h 2026-05-22T13:14:27,866 creating build/lib/torchref/data/monomer_library/v 2026-05-22T13:14:27,868 copying torchref/data/monomer_library/v/VAL.cif -> build/lib/torchref/data/monomer_library/v 2026-05-22T13:14:27,870 creating build/lib/torchref/data/monomer_library/list 2026-05-22T13:14:27,872 copying torchref/data/monomer_library/list/mon_lib_list.cif -> build/lib/torchref/data/monomer_library/list 2026-05-22T13:14:27,944 creating build/lib/torchref/data/monomer_library/u 2026-05-22T13:14:27,945 copying torchref/data/monomer_library/u/U.cif -> build/lib/torchref/data/monomer_library/u 2026-05-22T13:14:27,995 installing to build/bdist.linux-armv7l/wheel 2026-05-22T13:14:27,995 running install 2026-05-22T13:14:28,019 running install_lib 2026-05-22T13:14:28,025 creating build/bdist.linux-armv7l/wheel 2026-05-22T13:14:28,027 creating build/bdist.linux-armv7l/wheel/torchref 2026-05-22T13:14:28,029 creating build/bdist.linux-armv7l/wheel/torchref/scripts 2026-05-22T13:14:28,030 copying build/lib/torchref/scripts/generate_scattering_table.py -> build/bdist.linux-armv7l/wheel/./torchref/scripts 2026-05-22T13:14:28,033 copying build/lib/torchref/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/scripts 2026-05-22T13:14:28,035 copying build/lib/torchref/config.py -> build/bdist.linux-armv7l/wheel/./torchref 2026-05-22T13:14:28,038 creating build/bdist.linux-armv7l/wheel/torchref/data 2026-05-22T13:14:28,039 copying build/lib/torchref/data/atomic_vdw_radii.csv -> build/bdist.linux-armv7l/wheel/./torchref/data 2026-05-22T13:14:28,041 copying build/lib/torchref/data/itc92_scattering_factors.pt -> build/bdist.linux-armv7l/wheel/./torchref/data 2026-05-22T13:14:28,044 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library 2026-05-22T13:14:28,046 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/c 2026-05-22T13:14:28,047 copying build/lib/torchref/data/monomer_library/c/CYS.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/c 2026-05-22T13:14:28,050 copying build/lib/torchref/data/monomer_library/c/C.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/c 2026-05-22T13:14:28,053 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/d 2026-05-22T13:14:28,054 copying build/lib/torchref/data/monomer_library/d/DA.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/d 2026-05-22T13:14:28,057 copying build/lib/torchref/data/monomer_library/d/DT.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/d 2026-05-22T13:14:28,060 copying build/lib/torchref/data/monomer_library/d/DC.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/d 2026-05-22T13:14:28,063 copying build/lib/torchref/data/monomer_library/d/DG.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/d 2026-05-22T13:14:28,066 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/p 2026-05-22T13:14:28,068 copying build/lib/torchref/data/monomer_library/p/PHE.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/p 2026-05-22T13:14:28,070 copying build/lib/torchref/data/monomer_library/p/PRO.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/p 2026-05-22T13:14:28,073 copying build/lib/torchref/data/monomer_library/p/PTR.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/p 2026-05-22T13:14:28,076 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/t 2026-05-22T13:14:28,077 copying build/lib/torchref/data/monomer_library/t/TYR.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/t 2026-05-22T13:14:28,079 copying build/lib/torchref/data/monomer_library/t/TRP.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/t 2026-05-22T13:14:28,082 copying build/lib/torchref/data/monomer_library/t/THR.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/t 2026-05-22T13:14:28,084 copying build/lib/torchref/data/monomer_library/t/TPO.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/t 2026-05-22T13:14:28,087 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/a 2026-05-22T13:14:28,088 copying build/lib/torchref/data/monomer_library/a/ALA.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/a 2026-05-22T13:14:28,091 copying build/lib/torchref/data/monomer_library/a/ARG.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/a 2026-05-22T13:14:28,093 copying build/lib/torchref/data/monomer_library/a/ASP.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/a 2026-05-22T13:14:28,095 copying build/lib/torchref/data/monomer_library/a/ASN.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/a 2026-05-22T13:14:28,098 copying build/lib/torchref/data/monomer_library/a/A.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/a 2026-05-22T13:14:28,101 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/g 2026-05-22T13:14:28,102 copying build/lib/torchref/data/monomer_library/g/G.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/g 2026-05-22T13:14:28,104 copying build/lib/torchref/data/monomer_library/g/GLU.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/g 2026-05-22T13:14:28,107 copying build/lib/torchref/data/monomer_library/g/GLY.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/g 2026-05-22T13:14:28,109 copying build/lib/torchref/data/monomer_library/g/GLN.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/g 2026-05-22T13:14:28,112 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/l 2026-05-22T13:14:28,113 copying build/lib/torchref/data/monomer_library/l/LYS.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/l 2026-05-22T13:14:28,115 copying build/lib/torchref/data/monomer_library/l/LEU.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/l 2026-05-22T13:14:28,118 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/s 2026-05-22T13:14:28,119 copying build/lib/torchref/data/monomer_library/s/SEP.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/s 2026-05-22T13:14:28,122 copying build/lib/torchref/data/monomer_library/s/SER.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/s 2026-05-22T13:14:28,125 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/m 2026-05-22T13:14:28,126 copying build/lib/torchref/data/monomer_library/m/MSE.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/m 2026-05-22T13:14:28,129 copying build/lib/torchref/data/monomer_library/m/MET.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/m 2026-05-22T13:14:28,132 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/i 2026-05-22T13:14:28,133 copying build/lib/torchref/data/monomer_library/i/ILE.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/i 2026-05-22T13:14:28,136 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/h 2026-05-22T13:14:28,137 copying build/lib/torchref/data/monomer_library/h/HIS.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/h 2026-05-22T13:14:28,140 copying build/lib/torchref/data/monomer_library/h/HYP.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/h 2026-05-22T13:14:28,142 copying build/lib/torchref/data/monomer_library/h/HOH.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/h 2026-05-22T13:14:28,144 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/v 2026-05-22T13:14:28,146 copying build/lib/torchref/data/monomer_library/v/VAL.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/v 2026-05-22T13:14:28,149 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/list 2026-05-22T13:14:28,150 copying build/lib/torchref/data/monomer_library/list/mon_lib_list.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/list 2026-05-22T13:14:28,226 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/u 2026-05-22T13:14:28,227 copying build/lib/torchref/data/monomer_library/u/U.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/u 2026-05-22T13:14:28,230 copying build/lib/torchref/data/rama_nll_surfaces.pt -> build/bdist.linux-armv7l/wheel/./torchref/data 2026-05-22T13:14:28,277 creating build/bdist.linux-armv7l/wheel/torchref/model 2026-05-22T13:14:28,278 copying build/lib/torchref/model/sf_ds.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,281 copying build/lib/torchref/model/internal_coordinates.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,285 copying build/lib/torchref/model/closed_segmented_internal_coordinates.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,288 copying build/lib/torchref/model/sf_fft.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,292 copying build/lib/torchref/model/model.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,296 copying build/lib/torchref/model/model_collection.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,299 copying build/lib/torchref/model/mixed_model.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,302 copying build/lib/torchref/model/model_ft.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,306 copying build/lib/torchref/model/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,308 copying build/lib/torchref/model/parameter_wrappers.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,312 copying build/lib/torchref/model/segmented_internal_coordinates.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-22T13:14:28,317 creating build/bdist.linux-armv7l/wheel/torchref/symmetry 2026-05-22T13:14:28,318 copying build/lib/torchref/symmetry/symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-22T13:14:28,321 copying build/lib/torchref/symmetry/map_symmetry_interpolation.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-22T13:14:28,324 copying build/lib/torchref/symmetry/map_symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-22T13:14:28,327 copying build/lib/torchref/symmetry/cell.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-22T13:14:28,330 copying build/lib/torchref/symmetry/grid_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-22T13:14:28,333 copying build/lib/torchref/symmetry/spacegroup.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-22T13:14:28,336 copying build/lib/torchref/symmetry/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-22T13:14:28,339 copying build/lib/torchref/symmetry/reciprocal_symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-22T13:14:28,343 creating build/bdist.linux-armv7l/wheel/torchref/io 2026-05-22T13:14:28,345 copying build/lib/torchref/io/cif_readers.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-22T13:14:28,349 copying build/lib/torchref/io/mtz.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-22T13:14:28,352 copying build/lib/torchref/io/pdb.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-22T13:14:28,355 copying build/lib/torchref/io/cif.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-22T13:14:28,358 copying build/lib/torchref/io/metadata.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-22T13:14:28,362 copying build/lib/torchref/io/ihm_mapping.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-22T13:14:28,365 creating build/bdist.linux-armv7l/wheel/torchref/io/datasets 2026-05-22T13:14:28,366 copying build/lib/torchref/io/datasets/fcalc_data.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets 2026-05-22T13:14:28,370 copying build/lib/torchref/io/datasets/reflection_data.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets 2026-05-22T13:14:28,375 copying build/lib/torchref/io/datasets/collection.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets 2026-05-22T13:14:28,378 copying build/lib/torchref/io/datasets/base.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets 2026-05-22T13:14:28,381 copying build/lib/torchref/io/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets 2026-05-22T13:14:28,383 copying build/lib/torchref/io/ihm.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-22T13:14:28,387 copying build/lib/torchref/io/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-22T13:14:28,390 copying build/lib/torchref/io/data_router.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-22T13:14:28,393 creating build/bdist.linux-armv7l/wheel/torchref/kinetic 2026-05-22T13:14:28,395 copying build/lib/torchref/kinetic/targets.py -> build/bdist.linux-armv7l/wheel/./torchref/kinetic 2026-05-22T13:14:28,398 copying build/lib/torchref/kinetic/refinement.py -> build/bdist.linux-armv7l/wheel/./torchref/kinetic 2026-05-22T13:14:28,401 copying build/lib/torchref/kinetic/occupancies.py -> build/bdist.linux-armv7l/wheel/./torchref/kinetic 2026-05-22T13:14:28,404 copying build/lib/torchref/kinetic/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/kinetic 2026-05-22T13:14:28,407 copying build/lib/torchref/kinetic/kinetics.py -> build/bdist.linux-armv7l/wheel/./torchref/kinetic 2026-05-22T13:14:28,411 creating build/bdist.linux-armv7l/wheel/torchref/refinement 2026-05-22T13:14:28,412 copying build/lib/torchref/refinement/loss_state.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement 2026-05-22T13:14:28,416 creating build/bdist.linux-armv7l/wheel/torchref/refinement/targets 2026-05-22T13:14:28,417 copying build/lib/torchref/refinement/targets/occupancy_floor_diagnostic.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-22T13:14:28,420 copying build/lib/torchref/refinement/targets/realspace.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-22T13:14:28,423 copying build/lib/torchref/refinement/targets/difference.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-22T13:14:28,427 creating build/bdist.linux-armv7l/wheel/torchref/refinement/targets/adp 2026-05-22T13:14:28,428 copying build/lib/torchref/refinement/targets/adp/entropy.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-22T13:14:28,431 copying build/lib/torchref/refinement/targets/adp/locality.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-22T13:14:28,433 copying build/lib/torchref/refinement/targets/adp/rigid_bond.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-22T13:14:28,436 copying build/lib/torchref/refinement/targets/adp/similarity.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-22T13:14:28,438 copying build/lib/torchref/refinement/targets/adp/scaler_log_scale.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-22T13:14:28,440 copying build/lib/torchref/refinement/targets/adp/scaler_u.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-22T13:14:28,442 copying build/lib/torchref/refinement/targets/adp/base.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-22T13:14:28,444 copying build/lib/torchref/refinement/targets/adp/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-22T13:14:28,447 creating build/bdist.linux-armv7l/wheel/torchref/refinement/targets/geometry 2026-05-22T13:14:28,448 copying build/lib/torchref/refinement/targets/geometry/non_bonded_h.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-22T13:14:28,451 copying build/lib/torchref/refinement/targets/geometry/ramachandran.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-22T13:14:28,453 copying build/lib/torchref/refinement/targets/geometry/bonds.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-22T13:14:28,455 copying build/lib/torchref/refinement/targets/geometry/non_bonded.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-22T13:14:28,458 copying build/lib/torchref/refinement/targets/geometry/planarity.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-22T13:14:28,460 copying build/lib/torchref/refinement/targets/geometry/torsions.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-22T13:14:28,462 copying build/lib/torchref/refinement/targets/geometry/base.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-22T13:14:28,464 copying build/lib/torchref/refinement/targets/geometry/chiral.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-22T13:14:28,467 copying build/lib/torchref/refinement/targets/geometry/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-22T13:14:28,469 copying build/lib/torchref/refinement/targets/geometry/angles.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-22T13:14:28,471 copying build/lib/torchref/refinement/targets/combined.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-22T13:14:28,474 copying build/lib/torchref/refinement/targets/similarity.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-22T13:14:28,477 copying build/lib/torchref/refinement/targets/sampled_ml_phase_target.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-22T13:14:28,480 copying build/lib/torchref/refinement/targets/base.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-22T13:14:28,482 copying build/lib/torchref/refinement/targets/amber_target.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-22T13:14:28,487 creating build/bdist.linux-armv7l/wheel/torchref/refinement/targets/xray 2026-05-22T13:14:28,488 copying build/lib/torchref/refinement/targets/xray/maximum_likelihood.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-22T13:14:28,490 copying build/lib/torchref/refinement/targets/xray/least_squares.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-22T13:14:28,492 copying build/lib/torchref/refinement/targets/xray/gaussian.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-22T13:14:28,494 copying build/lib/torchref/refinement/targets/xray/bhattacharyya.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-22T13:14:28,497 copying build/lib/torchref/refinement/targets/xray/base.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-22T13:14:28,500 copying build/lib/torchref/refinement/targets/xray/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-22T13:14:28,502 copying build/lib/torchref/refinement/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-22T13:14:28,504 copying build/lib/torchref/refinement/targets/forcefield_target.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-22T13:14:28,507 creating build/bdist.linux-armv7l/wheel/torchref/refinement/weighting 2026-05-22T13:14:28,508 copying build/lib/torchref/refinement/weighting/policy_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-22T13:14:28,511 copying build/lib/torchref/refinement/weighting/random_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-22T13:14:28,514 copying build/lib/torchref/refinement/weighting/es_policy_training.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-22T13:14:28,516 copying build/lib/torchref/refinement/weighting/component_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-22T13:14:28,519 copying build/lib/torchref/refinement/weighting/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-22T13:14:28,521 copying build/lib/torchref/refinement/weighting/base_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-22T13:14:28,524 creating build/bdist.linux-armv7l/wheel/torchref/refinement/optimizers 2026-05-22T13:14:28,525 copying build/lib/torchref/refinement/optimizers/adam_noise.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-22T13:14:28,527 copying build/lib/torchref/refinement/optimizers/simulated_annealing.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-22T13:14:28,530 copying build/lib/torchref/refinement/optimizers/internal_coord_sa.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-22T13:14:28,533 copying build/lib/torchref/refinement/optimizers/langevin_sa.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-22T13:14:28,535 copying build/lib/torchref/refinement/optimizers/exploratory_lbfgs.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-22T13:14:28,539 copying build/lib/torchref/refinement/optimizers/momentum_sa.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-22T13:14:28,541 copying build/lib/torchref/refinement/optimizers/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-22T13:14:28,543 copying build/lib/torchref/refinement/base_refinement.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement 2026-05-22T13:14:28,546 copying build/lib/torchref/refinement/logger.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement 2026-05-22T13:14:28,549 copying build/lib/torchref/refinement/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement 2026-05-22T13:14:28,551 copying build/lib/torchref/refinement/lbfgs_refinement.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement 2026-05-22T13:14:28,555 creating build/bdist.linux-armv7l/wheel/torchref/base 2026-05-22T13:14:28,556 copying build/lib/torchref/base/get_scattering_factor_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-22T13:14:28,559 creating build/bdist.linux-armv7l/wheel/torchref/base/targets 2026-05-22T13:14:28,561 copying build/lib/torchref/base/targets/_common.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,563 copying build/lib/torchref/base/targets/xray_bhattacharyya.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,565 copying build/lib/torchref/base/targets/adp.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,567 copying build/lib/torchref/base/targets/xray_ml.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,569 copying build/lib/torchref/base/targets/bond.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,572 copying build/lib/torchref/base/targets/ramachandran.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,574 copying build/lib/torchref/base/targets/torsion.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,576 copying build/lib/torchref/base/targets/angle.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,578 copying build/lib/torchref/base/targets/xray_ls.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,580 copying build/lib/torchref/base/targets/xray_gaussian.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,582 copying build/lib/torchref/base/targets/planarity.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,584 copying build/lib/torchref/base/targets/_dispatch.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,586 copying build/lib/torchref/base/targets/chiral.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,588 copying build/lib/torchref/base/targets/nonbonded.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,591 copying build/lib/torchref/base/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-22T13:14:28,594 creating build/bdist.linux-armv7l/wheel/torchref/base/targets/triton 2026-05-22T13:14:28,595 copying build/lib/torchref/base/targets/triton/xray_bhattacharyya.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,597 copying build/lib/torchref/base/targets/triton/_dihedral.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,600 copying build/lib/torchref/base/targets/triton/xray_ml.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,602 copying build/lib/torchref/base/targets/triton/bond.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,605 copying build/lib/torchref/base/targets/triton/ramachandran.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,607 copying build/lib/torchref/base/targets/triton/place_hydrogens.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,610 copying build/lib/torchref/base/targets/triton/torsion.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,613 copying build/lib/torchref/base/targets/triton/angle.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,615 copying build/lib/torchref/base/targets/triton/xray_ls.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,618 copying build/lib/torchref/base/targets/triton/xray_gaussian.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,620 copying build/lib/torchref/base/targets/triton/planarity.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,622 copying build/lib/torchref/base/targets/triton/adp_simu.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,624 copying build/lib/torchref/base/targets/triton/chiral.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,627 copying build/lib/torchref/base/targets/triton/nonbonded.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,630 copying build/lib/torchref/base/targets/triton/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-22T13:14:28,632 creating build/bdist.linux-armv7l/wheel/torchref/base/coordinates 2026-05-22T13:14:28,633 copying build/lib/torchref/base/coordinates/transforms_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates 2026-05-22T13:14:28,636 copying build/lib/torchref/base/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates 2026-05-22T13:14:28,638 copying build/lib/torchref/base/coordinates/periodic_boundary.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates 2026-05-22T13:14:28,640 copying build/lib/torchref/base/coordinates/transforms_numpy.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates 2026-05-22T13:14:28,642 copying build/lib/torchref/base/math_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-22T13:14:28,645 creating build/bdist.linux-armv7l/wheel/torchref/base/reciprocal 2026-05-22T13:14:28,646 copying build/lib/torchref/base/reciprocal/symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-22T13:14:28,649 copying build/lib/torchref/base/reciprocal/hkl.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-22T13:14:28,651 copying build/lib/torchref/base/reciprocal/interpolation.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-22T13:14:28,654 copying build/lib/torchref/base/reciprocal/grid_operations.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-22T13:14:28,656 copying build/lib/torchref/base/reciprocal/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-22T13:14:28,658 copying build/lib/torchref/base/reciprocal/basis.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-22T13:14:28,661 copying build/lib/torchref/base/CCTBX_related.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-22T13:14:28,663 creating build/bdist.linux-armv7l/wheel/torchref/base/scattering 2026-05-22T13:14:28,664 copying build/lib/torchref/base/scattering/scattering_table.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering 2026-05-22T13:14:28,667 copying build/lib/torchref/base/scattering/anomalous_table.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering 2026-05-22T13:14:28,669 copying build/lib/torchref/base/scattering/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering 2026-05-22T13:14:28,671 copying build/lib/torchref/base/scattering/itc92.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering 2026-05-22T13:14:28,674 copying build/lib/torchref/base/french_wilson.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-22T13:14:28,678 creating build/bdist.linux-armv7l/wheel/torchref/base/kernels 2026-05-22T13:14:28,679 copying build/lib/torchref/base/kernels/separable_triton_kernel.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-22T13:14:28,683 copying build/lib/torchref/base/kernels/jit_kernel_vectorized_add_to_map.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-22T13:14:28,686 copying build/lib/torchref/base/kernels/triton_kernel.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-22T13:14:28,689 copying build/lib/torchref/base/kernels/cpu_scatter.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-22T13:14:28,692 copying build/lib/torchref/base/kernels/optimized_ops.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-22T13:14:28,694 copying build/lib/torchref/base/kernels/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-22T13:14:28,697 creating build/bdist.linux-armv7l/wheel/torchref/base/metrics 2026-05-22T13:14:28,698 copying build/lib/torchref/base/metrics/rfactor.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics 2026-05-22T13:14:28,701 copying build/lib/torchref/base/metrics/loss.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics 2026-05-22T13:14:28,703 copying build/lib/torchref/base/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics 2026-05-22T13:14:28,706 creating build/bdist.linux-armv7l/wheel/torchref/base/fourier 2026-05-22T13:14:28,707 copying build/lib/torchref/base/fourier/grid.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier 2026-05-22T13:14:28,709 copying build/lib/torchref/base/fourier/fft.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier 2026-05-22T13:14:28,712 copying build/lib/torchref/base/fourier/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier 2026-05-22T13:14:28,714 creating build/bdist.linux-armv7l/wheel/torchref/base/electron_density 2026-05-22T13:14:28,715 copying build/lib/torchref/base/electron_density/voxel_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density 2026-05-22T13:14:28,718 copying build/lib/torchref/base/electron_density/main.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density 2026-05-22T13:14:28,721 copying build/lib/torchref/base/electron_density/map_building.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density 2026-05-22T13:14:28,723 copying build/lib/torchref/base/electron_density/solvent_mask.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density 2026-05-22T13:14:28,726 copying build/lib/torchref/base/electron_density/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density 2026-05-22T13:14:28,728 copying build/lib/torchref/base/math_numpy.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-22T13:14:28,731 creating build/bdist.linux-armv7l/wheel/torchref/base/alignment 2026-05-22T13:14:28,732 copying build/lib/torchref/base/alignment/scoring.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment 2026-05-22T13:14:28,735 copying build/lib/torchref/base/alignment/rotation.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment 2026-05-22T13:14:28,737 copying build/lib/torchref/base/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment 2026-05-22T13:14:28,739 copying build/lib/torchref/base/alignment/superposition.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment 2026-05-22T13:14:28,742 copying build/lib/torchref/base/alignment/normalization.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment 2026-05-22T13:14:28,745 creating build/bdist.linux-armv7l/wheel/torchref/base/direct_summation 2026-05-22T13:14:28,746 copying build/lib/torchref/base/direct_summation/isotropic.py -> build/bdist.linux-armv7l/wheel/./torchref/base/direct_summation 2026-05-22T13:14:28,749 copying build/lib/torchref/base/direct_summation/corrections.py -> build/bdist.linux-armv7l/wheel/./torchref/base/direct_summation 2026-05-22T13:14:28,751 copying build/lib/torchref/base/direct_summation/anisotropic.py -> build/bdist.linux-armv7l/wheel/./torchref/base/direct_summation 2026-05-22T13:14:28,753 copying build/lib/torchref/base/direct_summation/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/direct_summation 2026-05-22T13:14:28,755 copying build/lib/torchref/base/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-22T13:14:28,759 creating build/bdist.linux-armv7l/wheel/torchref/base/chain_closure 2026-05-22T13:14:28,760 copying build/lib/torchref/base/chain_closure/backbone_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/base/chain_closure 2026-05-22T13:14:28,763 copying build/lib/torchref/base/chain_closure/closure.py -> build/bdist.linux-armv7l/wheel/./torchref/base/chain_closure 2026-05-22T13:14:28,766 copying build/lib/torchref/base/chain_closure/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/chain_closure 2026-05-22T13:14:28,768 creating build/bdist.linux-armv7l/wheel/torchref/scaling 2026-05-22T13:14:28,769 copying build/lib/torchref/scaling/scaler_base.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling 2026-05-22T13:14:28,773 copying build/lib/torchref/scaling/scaler.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling 2026-05-22T13:14:28,775 copying build/lib/torchref/scaling/solvent.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling 2026-05-22T13:14:28,778 copying build/lib/torchref/scaling/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling 2026-05-22T13:14:28,780 copying build/lib/torchref/scaling/collection_scaler.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling 2026-05-22T13:14:28,784 creating build/bdist.linux-armv7l/wheel/torchref/alignment 2026-05-22T13:14:28,785 copying build/lib/torchref/alignment/jax_subpixel_peaks.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-22T13:14:28,787 copying build/lib/torchref/alignment/ball_transform.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-22T13:14:28,792 copying build/lib/torchref/alignment/sampling.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-22T13:14:28,795 copying build/lib/torchref/alignment/translation.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-22T13:14:28,797 copying build/lib/torchref/alignment/distributions.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-22T13:14:28,799 copying build/lib/torchref/alignment/transform.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-22T13:14:28,802 copying build/lib/torchref/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-22T13:14:28,805 copying build/lib/torchref/alignment/clashscore.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-22T13:14:28,808 copying build/lib/torchref/alignment/rigid_body.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-22T13:14:28,810 copying build/lib/torchref/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-22T13:14:28,814 creating build/bdist.linux-armv7l/wheel/torchref/maps 2026-05-22T13:14:28,815 copying build/lib/torchref/maps/difference_map.py -> build/bdist.linux-armv7l/wheel/./torchref/maps 2026-05-22T13:14:28,817 copying build/lib/torchref/maps/map.py -> build/bdist.linux-armv7l/wheel/./torchref/maps 2026-05-22T13:14:28,820 copying build/lib/torchref/maps/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/maps 2026-05-22T13:14:28,822 creating build/bdist.linux-armv7l/wheel/torchref/cli 2026-05-22T13:14:28,823 copying build/lib/torchref/cli/_common.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-22T13:14:28,826 copying build/lib/torchref/cli/strip_altlocs.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-22T13:14:28,828 copying build/lib/torchref/cli/mtz2map.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-22T13:14:28,831 copying build/lib/torchref/cli/add_metadata.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-22T13:14:28,833 copying build/lib/torchref/cli/validate_ded.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-22T13:14:28,837 copying build/lib/torchref/cli/collection_difference_refine.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-22T13:14:28,840 copying build/lib/torchref/cli/phased_difference_map.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-22T13:14:28,843 copying build/lib/torchref/cli/refine.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-22T13:14:28,845 copying build/lib/torchref/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-22T13:14:28,848 copying build/lib/torchref/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref 2026-05-22T13:14:28,850 copying build/lib/torchref/_bootstrap.py -> build/bdist.linux-armv7l/wheel/./torchref 2026-05-22T13:14:28,853 creating build/bdist.linux-armv7l/wheel/torchref/utils 2026-05-22T13:14:28,855 copying build/lib/torchref/utils/autograd_ops.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,857 copying build/lib/torchref/utils/device_resolution.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,860 copying build/lib/torchref/utils/timing.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,862 copying build/lib/torchref/utils/gradnorm.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,864 copying build/lib/torchref/utils/device_mixin.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,866 copying build/lib/torchref/utils/utils.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,869 copying build/lib/torchref/utils/caching.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,872 copying build/lib/torchref/utils/loss_validation.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,874 copying build/lib/torchref/utils/pse.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,877 copying build/lib/torchref/utils/hyperparameters.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,879 copying build/lib/torchref/utils/autograd_introspection.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,881 copying build/lib/torchref/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,883 copying build/lib/torchref/utils/serialization.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,885 copying build/lib/torchref/utils/stats.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,887 copying build/lib/torchref/utils/debug_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-22T13:14:28,891 creating build/bdist.linux-armv7l/wheel/torchref/restraints 2026-05-22T13:14:28,892 copying build/lib/torchref/restraints/library.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-22T13:14:28,895 copying build/lib/torchref/restraints/restraints_helper.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-22T13:14:28,899 copying build/lib/torchref/restraints/ramachandran.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-22T13:14:28,901 copying build/lib/torchref/restraints/neighbor_search.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-22T13:14:28,905 copying build/lib/torchref/restraints/restraints.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-22T13:14:28,910 copying build/lib/torchref/restraints/hydrogen_topology.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-22T13:14:28,913 copying build/lib/torchref/restraints/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-22T13:14:28,915 copying build/lib/torchref/restraints/builders.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-22T13:14:28,918 copying build/lib/torchref/restraints/builders_fast.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-22T13:14:28,923 copying build/lib/torchref/restraints/builders_numba.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-22T13:14:28,926 running install_egg_info 2026-05-22T13:14:28,932 Copying torchref.egg-info to build/bdist.linux-armv7l/wheel/./torchref-0.5.3.1-py3.11.egg-info 2026-05-22T13:14:28,947 running install_scripts 2026-05-22T13:14:28,960 creating build/bdist.linux-armv7l/wheel/torchref-0.5.3.1.dist-info/WHEEL 2026-05-22T13:14:28,963 creating '/tmp/pip-wheel-jn9nt5_j/.tmp-bjd5vn8m/torchref-0.5.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-22T13:14:28,966 adding 'torchref/__init__.py' 2026-05-22T13:14:28,968 adding 'torchref/_bootstrap.py' 2026-05-22T13:14:28,970 adding 'torchref/config.py' 2026-05-22T13:14:28,973 adding 'torchref/alignment/__init__.py' 2026-05-22T13:14:28,980 adding 'torchref/alignment/ball_transform.py' 2026-05-22T13:14:28,983 adding 'torchref/alignment/clashscore.py' 2026-05-22T13:14:28,985 adding 'torchref/alignment/distributions.py' 2026-05-22T13:14:28,986 adding 'torchref/alignment/jax_subpixel_peaks.py' 2026-05-22T13:14:28,989 adding 'torchref/alignment/pipeline.py' 2026-05-22T13:14:28,992 adding 'torchref/alignment/rigid_body.py' 2026-05-22T13:14:28,994 adding 'torchref/alignment/sampling.py' 2026-05-22T13:14:28,997 adding 'torchref/alignment/transform.py' 2026-05-22T13:14:28,999 adding 'torchref/alignment/translation.py' 2026-05-22T13:14:29,001 adding 'torchref/base/CCTBX_related.py' 2026-05-22T13:14:29,003 adding 'torchref/base/__init__.py' 2026-05-22T13:14:29,007 adding 'torchref/base/french_wilson.py' 2026-05-22T13:14:29,009 adding 'torchref/base/get_scattering_factor_torch.py' 2026-05-22T13:14:29,012 adding 'torchref/base/math_numpy.py' 2026-05-22T13:14:29,015 adding 'torchref/base/math_torch.py' 2026-05-22T13:14:29,017 adding 'torchref/base/alignment/__init__.py' 2026-05-22T13:14:29,019 adding 'torchref/base/alignment/normalization.py' 2026-05-22T13:14:29,021 adding 'torchref/base/alignment/rotation.py' 2026-05-22T13:14:29,022 adding 'torchref/base/alignment/scoring.py' 2026-05-22T13:14:29,024 adding 'torchref/base/alignment/superposition.py' 2026-05-22T13:14:29,026 adding 'torchref/base/chain_closure/__init__.py' 2026-05-22T13:14:29,028 adding 'torchref/base/chain_closure/backbone_utils.py' 2026-05-22T13:14:29,031 adding 'torchref/base/chain_closure/closure.py' 2026-05-22T13:14:29,033 adding 'torchref/base/coordinates/__init__.py' 2026-05-22T13:14:29,035 adding 'torchref/base/coordinates/periodic_boundary.py' 2026-05-22T13:14:29,036 adding 'torchref/base/coordinates/transforms_numpy.py' 2026-05-22T13:14:29,038 adding 'torchref/base/coordinates/transforms_torch.py' 2026-05-22T13:14:29,040 adding 'torchref/base/direct_summation/__init__.py' 2026-05-22T13:14:29,042 adding 'torchref/base/direct_summation/anisotropic.py' 2026-05-22T13:14:29,043 adding 'torchref/base/direct_summation/corrections.py' 2026-05-22T13:14:29,045 adding 'torchref/base/direct_summation/isotropic.py' 2026-05-22T13:14:29,047 adding 'torchref/base/electron_density/__init__.py' 2026-05-22T13:14:29,051 adding 'torchref/base/electron_density/main.py' 2026-05-22T13:14:29,054 adding 'torchref/base/electron_density/map_building.py' 2026-05-22T13:14:29,056 adding 'torchref/base/electron_density/solvent_mask.py' 2026-05-22T13:14:29,058 adding 'torchref/base/electron_density/voxel_utils.py' 2026-05-22T13:14:29,059 adding 'torchref/base/fourier/__init__.py' 2026-05-22T13:14:29,061 adding 'torchref/base/fourier/fft.py' 2026-05-22T13:14:29,062 adding 'torchref/base/fourier/grid.py' 2026-05-22T13:14:29,065 adding 'torchref/base/kernels/__init__.py' 2026-05-22T13:14:29,067 adding 'torchref/base/kernels/cpu_scatter.py' 2026-05-22T13:14:29,070 adding 'torchref/base/kernels/jit_kernel_vectorized_add_to_map.py' 2026-05-22T13:14:29,072 adding 'torchref/base/kernels/optimized_ops.py' 2026-05-22T13:14:29,077 adding 'torchref/base/kernels/separable_triton_kernel.py' 2026-05-22T13:14:29,080 adding 'torchref/base/kernels/triton_kernel.py' 2026-05-22T13:14:29,083 adding 'torchref/base/metrics/__init__.py' 2026-05-22T13:14:29,084 adding 'torchref/base/metrics/loss.py' 2026-05-22T13:14:29,086 adding 'torchref/base/metrics/rfactor.py' 2026-05-22T13:14:29,088 adding 'torchref/base/reciprocal/__init__.py' 2026-05-22T13:14:29,090 adding 'torchref/base/reciprocal/basis.py' 2026-05-22T13:14:29,091 adding 'torchref/base/reciprocal/grid_operations.py' 2026-05-22T13:14:29,093 adding 'torchref/base/reciprocal/hkl.py' 2026-05-22T13:14:29,095 adding 'torchref/base/reciprocal/interpolation.py' 2026-05-22T13:14:29,098 adding 'torchref/base/reciprocal/symmetry.py' 2026-05-22T13:14:29,100 adding 'torchref/base/scattering/__init__.py' 2026-05-22T13:14:29,101 adding 'torchref/base/scattering/anomalous_table.py' 2026-05-22T13:14:29,103 adding 'torchref/base/scattering/itc92.py' 2026-05-22T13:14:29,105 adding 'torchref/base/scattering/scattering_table.py' 2026-05-22T13:14:29,107 adding 'torchref/base/targets/__init__.py' 2026-05-22T13:14:29,108 adding 'torchref/base/targets/_common.py' 2026-05-22T13:14:29,110 adding 'torchref/base/targets/_dispatch.py' 2026-05-22T13:14:29,111 adding 'torchref/base/targets/adp.py' 2026-05-22T13:14:29,113 adding 'torchref/base/targets/angle.py' 2026-05-22T13:14:29,114 adding 'torchref/base/targets/bond.py' 2026-05-22T13:14:29,115 adding 'torchref/base/targets/chiral.py' 2026-05-22T13:14:29,117 adding 'torchref/base/targets/nonbonded.py' 2026-05-22T13:14:29,118 adding 'torchref/base/targets/planarity.py' 2026-05-22T13:14:29,120 adding 'torchref/base/targets/ramachandran.py' 2026-05-22T13:14:29,121 adding 'torchref/base/targets/torsion.py' 2026-05-22T13:14:29,122 adding 'torchref/base/targets/xray_bhattacharyya.py' 2026-05-22T13:14:29,124 adding 'torchref/base/targets/xray_gaussian.py' 2026-05-22T13:14:29,125 adding 'torchref/base/targets/xray_ls.py' 2026-05-22T13:14:29,126 adding 'torchref/base/targets/xray_ml.py' 2026-05-22T13:14:29,128 adding 'torchref/base/targets/triton/__init__.py' 2026-05-22T13:14:29,130 adding 'torchref/base/targets/triton/_dihedral.py' 2026-05-22T13:14:29,131 adding 'torchref/base/targets/triton/adp_simu.py' 2026-05-22T13:14:29,133 adding 'torchref/base/targets/triton/angle.py' 2026-05-22T13:14:29,134 adding 'torchref/base/targets/triton/bond.py' 2026-05-22T13:14:29,136 adding 'torchref/base/targets/triton/chiral.py' 2026-05-22T13:14:29,138 adding 'torchref/base/targets/triton/nonbonded.py' 2026-05-22T13:14:29,141 adding 'torchref/base/targets/triton/place_hydrogens.py' 2026-05-22T13:14:29,143 adding 'torchref/base/targets/triton/planarity.py' 2026-05-22T13:14:29,145 adding 'torchref/base/targets/triton/ramachandran.py' 2026-05-22T13:14:29,147 adding 'torchref/base/targets/triton/torsion.py' 2026-05-22T13:14:29,149 adding 'torchref/base/targets/triton/xray_bhattacharyya.py' 2026-05-22T13:14:29,150 adding 'torchref/base/targets/triton/xray_gaussian.py' 2026-05-22T13:14:29,152 adding 'torchref/base/targets/triton/xray_ls.py' 2026-05-22T13:14:29,154 adding 'torchref/base/targets/triton/xray_ml.py' 2026-05-22T13:14:29,156 adding 'torchref/cli/__init__.py' 2026-05-22T13:14:29,159 adding 'torchref/cli/_common.py' 2026-05-22T13:14:29,160 adding 'torchref/cli/add_metadata.py' 2026-05-22T13:14:29,166 adding 'torchref/cli/collection_difference_refine.py' 2026-05-22T13:14:29,168 adding 'torchref/cli/mtz2map.py' 2026-05-22T13:14:29,169 adding 'torchref/cli/phased_difference_map.py' 2026-05-22T13:14:29,171 adding 'torchref/cli/refine.py' 2026-05-22T13:14:29,173 adding 'torchref/cli/strip_altlocs.py' 2026-05-22T13:14:29,176 adding 'torchref/cli/validate_ded.py' 2026-05-22T13:14:29,178 adding 'torchref/data/atomic_vdw_radii.csv' 2026-05-22T13:14:29,180 adding 'torchref/data/itc92_scattering_factors.pt' 2026-05-22T13:14:29,414 adding 'torchref/data/rama_nll_surfaces.pt' 2026-05-22T13:14:29,437 adding 'torchref/data/monomer_library/a/A.cif' 2026-05-22T13:14:29,438 adding 'torchref/data/monomer_library/a/ALA.cif' 2026-05-22T13:14:29,440 adding 'torchref/data/monomer_library/a/ARG.cif' 2026-05-22T13:14:29,442 adding 'torchref/data/monomer_library/a/ASN.cif' 2026-05-22T13:14:29,443 adding 'torchref/data/monomer_library/a/ASP.cif' 2026-05-22T13:14:29,446 adding 'torchref/data/monomer_library/c/C.cif' 2026-05-22T13:14:29,448 adding 'torchref/data/monomer_library/c/CYS.cif' 2026-05-22T13:14:29,451 adding 'torchref/data/monomer_library/d/DA.cif' 2026-05-22T13:14:29,453 adding 'torchref/data/monomer_library/d/DC.cif' 2026-05-22T13:14:29,456 adding 'torchref/data/monomer_library/d/DG.cif' 2026-05-22T13:14:29,458 adding 'torchref/data/monomer_library/d/DT.cif' 2026-05-22T13:14:29,461 adding 'torchref/data/monomer_library/g/G.cif' 2026-05-22T13:14:29,463 adding 'torchref/data/monomer_library/g/GLN.cif' 2026-05-22T13:14:29,465 adding 'torchref/data/monomer_library/g/GLU.cif' 2026-05-22T13:14:29,466 adding 'torchref/data/monomer_library/g/GLY.cif' 2026-05-22T13:14:29,468 adding 'torchref/data/monomer_library/h/HIS.cif' 2026-05-22T13:14:29,470 adding 'torchref/data/monomer_library/h/HOH.cif' 2026-05-22T13:14:29,472 adding 'torchref/data/monomer_library/h/HYP.cif' 2026-05-22T13:14:29,474 adding 'torchref/data/monomer_library/i/ILE.cif' 2026-05-22T13:14:29,476 adding 'torchref/data/monomer_library/l/LEU.cif' 2026-05-22T13:14:29,478 adding 'torchref/data/monomer_library/l/LYS.cif' 2026-05-22T13:14:30,017 adding 'torchref/data/monomer_library/list/mon_lib_list.cif' 2026-05-22T13:14:30,044 adding 'torchref/data/monomer_library/m/MET.cif' 2026-05-22T13:14:30,046 adding 'torchref/data/monomer_library/m/MSE.cif' 2026-05-22T13:14:30,049 adding 'torchref/data/monomer_library/p/PHE.cif' 2026-05-22T13:14:30,050 adding 'torchref/data/monomer_library/p/PRO.cif' 2026-05-22T13:14:30,052 adding 'torchref/data/monomer_library/p/PTR.cif' 2026-05-22T13:14:30,055 adding 'torchref/data/monomer_library/s/SEP.cif' 2026-05-22T13:14:30,057 adding 'torchref/data/monomer_library/s/SER.cif' 2026-05-22T13:14:30,060 adding 'torchref/data/monomer_library/t/THR.cif' 2026-05-22T13:14:30,061 adding 'torchref/data/monomer_library/t/TPO.cif' 2026-05-22T13:14:30,063 adding 'torchref/data/monomer_library/t/TRP.cif' 2026-05-22T13:14:30,065 adding 'torchref/data/monomer_library/t/TYR.cif' 2026-05-22T13:14:30,068 adding 'torchref/data/monomer_library/u/U.cif' 2026-05-22T13:14:30,070 adding 'torchref/data/monomer_library/v/VAL.cif' 2026-05-22T13:14:30,072 adding 'torchref/io/__init__.py' 2026-05-22T13:14:30,074 adding 'torchref/io/cif.py' 2026-05-22T13:14:30,082 adding 'torchref/io/cif_readers.py' 2026-05-22T13:14:30,085 adding 'torchref/io/data_router.py' 2026-05-22T13:14:30,090 adding 'torchref/io/ihm.py' 2026-05-22T13:14:30,092 adding 'torchref/io/ihm_mapping.py' 2026-05-22T13:14:30,095 adding 'torchref/io/metadata.py' 2026-05-22T13:14:30,098 adding 'torchref/io/mtz.py' 2026-05-22T13:14:30,102 adding 'torchref/io/pdb.py' 2026-05-22T13:14:30,103 adding 'torchref/io/datasets/__init__.py' 2026-05-22T13:14:30,105 adding 'torchref/io/datasets/base.py' 2026-05-22T13:14:30,107 adding 'torchref/io/datasets/collection.py' 2026-05-22T13:14:30,110 adding 'torchref/io/datasets/fcalc_data.py' 2026-05-22T13:14:30,122 adding 'torchref/io/datasets/reflection_data.py' 2026-05-22T13:14:30,125 adding 'torchref/kinetic/__init__.py' 2026-05-22T13:14:30,130 adding 'torchref/kinetic/kinetics.py' 2026-05-22T13:14:30,133 adding 'torchref/kinetic/occupancies.py' 2026-05-22T13:14:30,137 adding 'torchref/kinetic/refinement.py' 2026-05-22T13:14:30,140 adding 'torchref/kinetic/targets.py' 2026-05-22T13:14:30,142 adding 'torchref/maps/__init__.py' 2026-05-22T13:14:30,144 adding 'torchref/maps/difference_map.py' 2026-05-22T13:14:30,146 adding 'torchref/maps/map.py' 2026-05-22T13:14:30,148 adding 'torchref/model/__init__.py' 2026-05-22T13:14:30,157 adding 'torchref/model/closed_segmented_internal_coordinates.py' 2026-05-22T13:14:30,165 adding 'torchref/model/internal_coordinates.py' 2026-05-22T13:14:30,168 adding 'torchref/model/mixed_model.py' 2026-05-22T13:14:30,183 adding 'torchref/model/model.py' 2026-05-22T13:14:30,186 adding 'torchref/model/model_collection.py' 2026-05-22T13:14:30,191 adding 'torchref/model/model_ft.py' 2026-05-22T13:14:30,200 adding 'torchref/model/parameter_wrappers.py' 2026-05-22T13:14:30,208 adding 'torchref/model/segmented_internal_coordinates.py' 2026-05-22T13:14:30,211 adding 'torchref/model/sf_ds.py' 2026-05-22T13:14:30,214 adding 'torchref/model/sf_fft.py' 2026-05-22T13:14:30,216 adding 'torchref/refinement/__init__.py' 2026-05-22T13:14:30,220 adding 'torchref/refinement/base_refinement.py' 2026-05-22T13:14:30,223 adding 'torchref/refinement/lbfgs_refinement.py' 2026-05-22T13:14:30,226 adding 'torchref/refinement/logger.py' 2026-05-22T13:14:30,230 adding 'torchref/refinement/loss_state.py' 2026-05-22T13:14:30,232 adding 'torchref/refinement/optimizers/__init__.py' 2026-05-22T13:14:30,234 adding 'torchref/refinement/optimizers/adam_noise.py' 2026-05-22T13:14:30,237 adding 'torchref/refinement/optimizers/exploratory_lbfgs.py' 2026-05-22T13:14:30,240 adding 'torchref/refinement/optimizers/internal_coord_sa.py' 2026-05-22T13:14:30,243 adding 'torchref/refinement/optimizers/langevin_sa.py' 2026-05-22T13:14:30,244 adding 'torchref/refinement/optimizers/momentum_sa.py' 2026-05-22T13:14:30,246 adding 'torchref/refinement/optimizers/simulated_annealing.py' 2026-05-22T13:14:30,248 adding 'torchref/refinement/targets/__init__.py' 2026-05-22T13:14:30,254 adding 'torchref/refinement/targets/amber_target.py' 2026-05-22T13:14:30,257 adding 'torchref/refinement/targets/base.py' 2026-05-22T13:14:30,259 adding 'torchref/refinement/targets/combined.py' 2026-05-22T13:14:30,264 adding 'torchref/refinement/targets/difference.py' 2026-05-22T13:14:30,266 adding 'torchref/refinement/targets/forcefield_target.py' 2026-05-22T13:14:30,269 adding 'torchref/refinement/targets/occupancy_floor_diagnostic.py' 2026-05-22T13:14:30,271 adding 'torchref/refinement/targets/realspace.py' 2026-05-22T13:14:30,275 adding 'torchref/refinement/targets/sampled_ml_phase_target.py' 2026-05-22T13:14:30,277 adding 'torchref/refinement/targets/similarity.py' 2026-05-22T13:14:30,279 adding 'torchref/refinement/targets/adp/__init__.py' 2026-05-22T13:14:30,280 adding 'torchref/refinement/targets/adp/base.py' 2026-05-22T13:14:30,281 adding 'torchref/refinement/targets/adp/entropy.py' 2026-05-22T13:14:30,283 adding 'torchref/refinement/targets/adp/locality.py' 2026-05-22T13:14:30,285 adding 'torchref/refinement/targets/adp/rigid_bond.py' 2026-05-22T13:14:30,286 adding 'torchref/refinement/targets/adp/scaler_log_scale.py' 2026-05-22T13:14:30,288 adding 'torchref/refinement/targets/adp/scaler_u.py' 2026-05-22T13:14:30,289 adding 'torchref/refinement/targets/adp/similarity.py' 2026-05-22T13:14:30,291 adding 'torchref/refinement/targets/geometry/__init__.py' 2026-05-22T13:14:30,292 adding 'torchref/refinement/targets/geometry/angles.py' 2026-05-22T13:14:30,294 adding 'torchref/refinement/targets/geometry/base.py' 2026-05-22T13:14:30,295 adding 'torchref/refinement/targets/geometry/bonds.py' 2026-05-22T13:14:30,296 adding 'torchref/refinement/targets/geometry/chiral.py' 2026-05-22T13:14:30,299 adding 'torchref/refinement/targets/geometry/non_bonded.py' 2026-05-22T13:14:30,301 adding 'torchref/refinement/targets/geometry/non_bonded_h.py' 2026-05-22T13:14:30,303 adding 'torchref/refinement/targets/geometry/planarity.py' 2026-05-22T13:14:30,304 adding 'torchref/refinement/targets/geometry/ramachandran.py' 2026-05-22T13:14:30,306 adding 'torchref/refinement/targets/geometry/torsions.py' 2026-05-22T13:14:30,308 adding 'torchref/refinement/targets/xray/__init__.py' 2026-05-22T13:14:30,310 adding 'torchref/refinement/targets/xray/base.py' 2026-05-22T13:14:30,312 adding 'torchref/refinement/targets/xray/bhattacharyya.py' 2026-05-22T13:14:30,313 adding 'torchref/refinement/targets/xray/gaussian.py' 2026-05-22T13:14:30,314 adding 'torchref/refinement/targets/xray/least_squares.py' 2026-05-22T13:14:30,316 adding 'torchref/refinement/targets/xray/maximum_likelihood.py' 2026-05-22T13:14:30,318 adding 'torchref/refinement/weighting/__init__.py' 2026-05-22T13:14:30,319 adding 'torchref/refinement/weighting/base_weighting.py' 2026-05-22T13:14:30,321 adding 'torchref/refinement/weighting/component_weighting.py' 2026-05-22T13:14:30,324 adding 'torchref/refinement/weighting/es_policy_training.py' 2026-05-22T13:14:30,327 adding 'torchref/refinement/weighting/policy_weighting.py' 2026-05-22T13:14:30,330 adding 'torchref/refinement/weighting/random_weighting.py' 2026-05-22T13:14:30,332 adding 'torchref/restraints/__init__.py' 2026-05-22T13:14:30,337 adding 'torchref/restraints/builders.py' 2026-05-22T13:14:30,344 adding 'torchref/restraints/builders_fast.py' 2026-05-22T13:14:30,348 adding 'torchref/restraints/builders_numba.py' 2026-05-22T13:14:30,353 adding 'torchref/restraints/hydrogen_topology.py' 2026-05-22T13:14:30,355 adding 'torchref/restraints/library.py' 2026-05-22T13:14:30,360 adding 'torchref/restraints/neighbor_search.py' 2026-05-22T13:14:30,362 adding 'torchref/restraints/ramachandran.py' 2026-05-22T13:14:30,372 adding 'torchref/restraints/restraints.py' 2026-05-22T13:14:30,376 adding 'torchref/restraints/restraints_helper.py' 2026-05-22T13:14:30,378 adding 'torchref/scaling/__init__.py' 2026-05-22T13:14:30,380 adding 'torchref/scaling/collection_scaler.py' 2026-05-22T13:14:30,383 adding 'torchref/scaling/scaler.py' 2026-05-22T13:14:30,388 adding 'torchref/scaling/scaler_base.py' 2026-05-22T13:14:30,391 adding 'torchref/scaling/solvent.py' 2026-05-22T13:14:30,393 adding 'torchref/scripts/__init__.py' 2026-05-22T13:14:30,395 adding 'torchref/scripts/generate_scattering_table.py' 2026-05-22T13:14:30,397 adding 'torchref/symmetry/__init__.py' 2026-05-22T13:14:30,399 adding 'torchref/symmetry/cell.py' 2026-05-22T13:14:30,400 adding 'torchref/symmetry/grid_utils.py' 2026-05-22T13:14:30,402 adding 'torchref/symmetry/map_symmetry.py' 2026-05-22T13:14:30,404 adding 'torchref/symmetry/map_symmetry_interpolation.py' 2026-05-22T13:14:30,410 adding 'torchref/symmetry/reciprocal_symmetry.py' 2026-05-22T13:14:30,414 adding 'torchref/symmetry/spacegroup.py' 2026-05-22T13:14:30,415 adding 'torchref/symmetry/symmetry.py' 2026-05-22T13:14:30,417 adding 'torchref/utils/__init__.py' 2026-05-22T13:14:30,419 adding 'torchref/utils/autograd_introspection.py' 2026-05-22T13:14:30,420 adding 'torchref/utils/autograd_ops.py' 2026-05-22T13:14:30,422 adding 'torchref/utils/caching.py' 2026-05-22T13:14:30,424 adding 'torchref/utils/debug_utils.py' 2026-05-22T13:14:30,426 adding 'torchref/utils/device_mixin.py' 2026-05-22T13:14:30,428 adding 'torchref/utils/device_resolution.py' 2026-05-22T13:14:30,429 adding 'torchref/utils/gradnorm.py' 2026-05-22T13:14:30,431 adding 'torchref/utils/hyperparameters.py' 2026-05-22T13:14:30,433 adding 'torchref/utils/loss_validation.py' 2026-05-22T13:14:30,434 adding 'torchref/utils/pse.py' 2026-05-22T13:14:30,436 adding 'torchref/utils/serialization.py' 2026-05-22T13:14:30,437 adding 'torchref/utils/stats.py' 2026-05-22T13:14:30,439 adding 'torchref/utils/timing.py' 2026-05-22T13:14:30,444 adding 'torchref/utils/utils.py' 2026-05-22T13:14:30,447 adding 'torchref-0.5.3.1.dist-info/licenses/LICENSE' 2026-05-22T13:14:30,448 adding 'torchref-0.5.3.1.dist-info/METADATA' 2026-05-22T13:14:30,449 adding 'torchref-0.5.3.1.dist-info/WHEEL' 2026-05-22T13:14:30,450 adding 'torchref-0.5.3.1.dist-info/entry_points.txt' 2026-05-22T13:14:30,452 adding 'torchref-0.5.3.1.dist-info/top_level.txt' 2026-05-22T13:14:30,456 adding 'torchref-0.5.3.1.dist-info/RECORD' 2026-05-22T13:14:30,495 removing build/bdist.linux-armv7l/wheel 2026-05-22T13:14:30,679 Building wheel for torchref (pyproject.toml): finished with status 'done' 2026-05-22T13:14:30,749 Created wheel for torchref: filename=torchref-0.5.3.1-py3-none-any.whl size=3131426 sha256=8df9f53b64172b5f1fe161b3c065938954fa302a7ce17fe795f1d667463632e8 2026-05-22T13:14:30,751 Stored in directory: /tmp/pip-ephem-wheel-cache-m812mc_r/wheels/40/44/e9/51cd850d172c88006e77f3bef0283b4b622439e5a7f58ae822 2026-05-22T13:14:30,771 Successfully built torchref 2026-05-22T13:14:30,846 Removed build tracker: '/tmp/pip-build-tracker-51s9vu8j'