2026-05-22T14:22:02,255 Created temporary directory: /tmp/pip-ephem-wheel-cache-zggksdok 2026-05-22T14:22:02,257 Created temporary directory: /tmp/pip-build-tracker-c5hezj6c 2026-05-22T14:22:02,258 Initialized build tracking at /tmp/pip-build-tracker-c5hezj6c 2026-05-22T14:22:02,258 Created build tracker: /tmp/pip-build-tracker-c5hezj6c 2026-05-22T14:22:02,259 Entered build tracker: /tmp/pip-build-tracker-c5hezj6c 2026-05-22T14:22:02,259 Created temporary directory: /tmp/pip-wheel-6wwwp4eu 2026-05-22T14:22:02,262 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-22T14:22:02,265 Created temporary directory: /tmp/pip-ephem-wheel-cache-w2f9rzxs 2026-05-22T14:22:02,286 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-22T14:22:02,290 2 location(s) to search for versions of acellera-htmd: 2026-05-22T14:22:02,290 * https://pypi.org/simple/acellera-htmd/ 2026-05-22T14:22:02,290 * https://www.piwheels.org/simple/acellera-htmd/ 2026-05-22T14:22:02,291 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/ 2026-05-22T14:22:02,291 Getting page https://pypi.org/simple/acellera-htmd/ 2026-05-22T14:22:02,293 Found index url https://pypi.org/simple 2026-05-22T14:22:02,522 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json 2026-05-22T14:22:02,526 Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2 2026-05-22T14:22:02,527 Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4 2026-05-22T14:22:02,528 Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5 2026-05-22T14:22:02,528 Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6 2026-05-22T14:22:02,529 Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8 2026-05-22T14:22:02,530 Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9 2026-05-22T14:22:02,531 Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0 2026-05-22T14:22:02,532 Found link https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.1 2026-05-22T14:22:02,533 Found link https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.2 2026-05-22T14:22:02,534 Found link https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.3 2026-05-22T14:22:02,535 Found link https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.4 2026-05-22T14:22:02,537 Found link https://files.pythonhosted.org/packages/0f/6b/33aaeb43df7e5b74f5070ddd7ebdd18076821ccdadc3f529c50436d9d008/acellera_htmd-2.6.5.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.5 2026-05-22T14:22:02,537 Found link https://files.pythonhosted.org/packages/b3/a6/c2e5b33d5c296f1277038a88421d1a5f265aa0bc614fb5dcd7c041936ec2/acellera_htmd-2.7.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.0 2026-05-22T14:22:02,538 Found link https://files.pythonhosted.org/packages/dc/e5/90f20a69067a35bceeb16ad0d05bd7d11890e619053858f07a284c7a7be0/acellera_htmd-2.7.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.1 2026-05-22T14:22:02,539 Found link https://files.pythonhosted.org/packages/fc/29/822cbadb48f1f2a00b28ed13fa91ff69ab8f959c76469bde4727bc580a08/acellera_htmd-2.7.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.7.2 2026-05-22T14:22:02,540 Found link https://files.pythonhosted.org/packages/b4/e1/a568d33218f7b481485e1611574ec7aad47d5cf9f63a106703fe32a70c62/acellera_htmd-2.8.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.8.0 2026-05-22T14:22:02,541 Found link https://files.pythonhosted.org/packages/21/25/960c829ec5a4bbf1524ad7f9011359b88851a8bcac7a9154630d5c0b22e3/acellera_htmd-2.8.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.8.1 2026-05-22T14:22:02,542 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/ 2026-05-22T14:22:02,542 Getting page https://www.piwheels.org/simple/acellera-htmd/ 2026-05-22T14:22:02,543 Found index url https://www.piwheels.org/simple 2026-05-22T14:22:02,721 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html 2026-05-22T14:22:02,726 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.8.0-py3-none-any.whl#sha256=b0ab4a0cee81b5c3aef0623994246ecaea0eeb2dd7bb8a717b425a58d11abd6c (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,727 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.7.2-py3-none-any.whl#sha256=5981b32e776cdd1db68041329bccaef131a9671f57a10bdd0e66b908e06c64a6 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,727 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.7.1-py3-none-any.whl#sha256=6f36f06960c7426c2cf2b06618e3d8cac0a977c4aa617ddb7751af386ad0ef96 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,728 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.7.0-py3-none-any.whl#sha256=404da5fc40b9411322f14455aebe19e3e684401fd2608a4fcf08b1f88762f2db (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,728 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.5-py3-none-any.whl#sha256=6a4478ef428c11d897f8bed0691db4c073ee7b0cc080975f0ce3794bb17152be (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,729 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.4-py3-none-any.whl#sha256=66c7d8d0f505d9c4515b9d989a0710120d27ef39bb24537b9729224bf711dcb6 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,730 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.3-py3-none-any.whl#sha256=32d22acbcd9e7adb5730ba97d1fe4de785a0814f14fd802980d53208fc6e291b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,730 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.2-py3-none-any.whl#sha256=eb4bab0a119829d1bc40fbb9918fd5ca3ed48922a4ebe7228717cf8de4aa1427 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,731 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.1-py3-none-any.whl#sha256=276acfba7f712b652f35f6ce7279fe2885edf66bce30142e45deb90188a58cfb (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,731 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.0-py3-none-any.whl#sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,732 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,732 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-05-22T14:22:02,733 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/) 2026-05-22T14:22:02,733 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/ 2026-05-22T14:22:02,734 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/ 2026-05-22T14:22:02,754 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates 2026-05-22T14:22:02,772 Collecting acellera-htmd==2.8.1 2026-05-22T14:22:02,774 Created temporary directory: /tmp/pip-unpack-u62stobr 2026-05-22T14:22:03,009 Downloading acellera_htmd-2.8.1.tar.gz (4.1 MB) 2026-05-22T14:22:05,161 Added acellera-htmd==2.8.1 from https://files.pythonhosted.org/packages/21/25/960c829ec5a4bbf1524ad7f9011359b88851a8bcac7a9154630d5c0b22e3/acellera_htmd-2.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-c5hezj6c' 2026-05-22T14:22:05,167 Created temporary directory: /tmp/pip-build-env-zz2n183i 2026-05-22T14:22:05,171 Installing build dependencies: started 2026-05-22T14:22:05,172 Running command pip subprocess to install build dependencies 2026-05-22T14:22:06,315 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-22T14:22:06,731 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-22T14:22:06,758 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-22T14:22:08,560 Collecting setuptools 2026-05-22T14:22:08,561 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-22T14:22:08,576 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-22T14:22:08,921 Collecting setuptools-scm>=8 2026-05-22T14:22:08,922 Obtaining dependency information for setuptools-scm>=8 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata 2026-05-22T14:22:08,937 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB) 2026-05-22T14:22:09,018 Collecting vcs-versioning>=1.0.0.dev0 2026-05-22T14:22:09,019 Obtaining dependency information for vcs-versioning>=1.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata 2026-05-22T14:22:09,035 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata (1.6 kB) 2026-05-22T14:22:09,225 Collecting packaging>=20 2026-05-22T14:22:09,226 Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-22T14:22:09,240 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-22T14:22:09,442 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-22T14:22:09,461 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-22T14:22:09,481 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-22T14:22:09,559 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-22T14:22:09,591 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-05-22T14:22:09,617 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-22T14:22:09,641 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-05-22T14:22:09,734 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-22T14:22:12,487 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-05-22T14:22:16,051 Creating /tmp/pip-build-env-zz2n183i/overlay/local/bin 2026-05-22T14:22:16,053 changing mode of /tmp/pip-build-env-zz2n183i/overlay/local/bin/vcs-versioning to 755 2026-05-22T14:22:16,160 changing mode of /tmp/pip-build-env-zz2n183i/overlay/local/bin/setuptools-scm to 755 2026-05-22T14:22:16,190 Successfully installed packaging-26.2 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-05-22T14:22:16,491 Installing build dependencies: finished with status 'done' 2026-05-22T14:22:16,497 Getting requirements to build wheel: started 2026-05-22T14:22:16,498 Running command Getting requirements to build wheel 2026-05-22T14:22:17,287 running egg_info 2026-05-22T14:22:17,295 writing acellera_htmd.egg-info/PKG-INFO 2026-05-22T14:22:17,299 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-05-22T14:22:17,301 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-05-22T14:22:17,305 writing requirements to acellera_htmd.egg-info/requires.txt 2026-05-22T14:22:17,307 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-05-22T14:22:17,416 /tmp/pip-build-env-zz2n183i/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-22T14:22:17,417 return get_active_overrides().subprocess_timeout 2026-05-22T14:22:17,424 listing git files failed - pretending there aren't any 2026-05-22T14:22:17,429 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-05-22T14:22:17,451 reading manifest template 'MANIFEST.in' 2026-05-22T14:22:17,479 no previously-included directories found matching 'htmd/data' 2026-05-22T14:22:17,480 no previously-included directories found matching '.github' 2026-05-22T14:22:17,481 no previously-included directories found matching 'doc' 2026-05-22T14:22:17,482 no previously-included directories found matching 'package' 2026-05-22T14:22:17,483 no previously-included directories found matching 'tests' 2026-05-22T14:22:17,485 no previously-included directories found matching 'tutorials' 2026-05-22T14:22:17,486 warning: no previously-included files found matching 'Makefile' 2026-05-22T14:22:17,486 adding license file 'LICENSE' 2026-05-22T14:22:17,510 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-05-22T14:22:17,616 Getting requirements to build wheel: finished with status 'done' 2026-05-22T14:22:17,619 Created temporary directory: /tmp/pip-modern-metadata-34qzr_eu 2026-05-22T14:22:17,621 Preparing metadata (pyproject.toml): started 2026-05-22T14:22:17,623 Running command Preparing metadata (pyproject.toml) 2026-05-22T14:22:18,365 running dist_info 2026-05-22T14:22:18,380 creating /tmp/pip-modern-metadata-34qzr_eu/acellera_htmd.egg-info 2026-05-22T14:22:18,381 writing /tmp/pip-modern-metadata-34qzr_eu/acellera_htmd.egg-info/PKG-INFO 2026-05-22T14:22:18,386 writing dependency_links to /tmp/pip-modern-metadata-34qzr_eu/acellera_htmd.egg-info/dependency_links.txt 2026-05-22T14:22:18,387 writing entry points to /tmp/pip-modern-metadata-34qzr_eu/acellera_htmd.egg-info/entry_points.txt 2026-05-22T14:22:18,391 writing requirements to /tmp/pip-modern-metadata-34qzr_eu/acellera_htmd.egg-info/requires.txt 2026-05-22T14:22:18,392 writing top-level names to /tmp/pip-modern-metadata-34qzr_eu/acellera_htmd.egg-info/top_level.txt 2026-05-22T14:22:18,394 writing manifest file '/tmp/pip-modern-metadata-34qzr_eu/acellera_htmd.egg-info/SOURCES.txt' 2026-05-22T14:22:18,486 /tmp/pip-build-env-zz2n183i/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-22T14:22:18,486 return get_active_overrides().subprocess_timeout 2026-05-22T14:22:18,493 listing git files failed - pretending there aren't any 2026-05-22T14:22:18,497 reading manifest file '/tmp/pip-modern-metadata-34qzr_eu/acellera_htmd.egg-info/SOURCES.txt' 2026-05-22T14:22:18,499 reading manifest template 'MANIFEST.in' 2026-05-22T14:22:18,525 no previously-included directories found matching 'htmd/data' 2026-05-22T14:22:18,526 no previously-included directories found matching '.github' 2026-05-22T14:22:18,527 no previously-included directories found matching 'doc' 2026-05-22T14:22:18,528 no previously-included directories found matching 'package' 2026-05-22T14:22:18,529 no previously-included directories found matching 'tests' 2026-05-22T14:22:18,530 no previously-included directories found matching 'tutorials' 2026-05-22T14:22:18,531 warning: no previously-included files found matching 'Makefile' 2026-05-22T14:22:18,532 adding license file 'LICENSE' 2026-05-22T14:22:18,550 writing manifest file '/tmp/pip-modern-metadata-34qzr_eu/acellera_htmd.egg-info/SOURCES.txt' 2026-05-22T14:22:18,552 creating '/tmp/pip-modern-metadata-34qzr_eu/acellera_htmd-2.8.1.dist-info' 2026-05-22T14:22:18,685 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-22T14:22:18,690 Source in /tmp/pip-wheel-6wwwp4eu/acellera-htmd_27e8e6f41d3c4f37aa18cefefbc8221e has version 2.8.1, which satisfies requirement acellera-htmd==2.8.1 from https://files.pythonhosted.org/packages/21/25/960c829ec5a4bbf1524ad7f9011359b88851a8bcac7a9154630d5c0b22e3/acellera_htmd-2.8.1.tar.gz 2026-05-22T14:22:18,691 Removed acellera-htmd==2.8.1 from https://files.pythonhosted.org/packages/21/25/960c829ec5a4bbf1524ad7f9011359b88851a8bcac7a9154630d5c0b22e3/acellera_htmd-2.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-c5hezj6c' 2026-05-22T14:22:18,697 Created temporary directory: /tmp/pip-unpack-ya3pubvy 2026-05-22T14:22:18,697 Building wheels for collected packages: acellera-htmd 2026-05-22T14:22:18,702 Created temporary directory: /tmp/pip-wheel-8_q378bm 2026-05-22T14:22:18,702 Destination directory: /tmp/pip-wheel-8_q378bm 2026-05-22T14:22:18,704 Building wheel for acellera-htmd (pyproject.toml): started 2026-05-22T14:22:18,705 Running command Building wheel for acellera-htmd (pyproject.toml) 2026-05-22T14:22:19,410 running bdist_wheel 2026-05-22T14:22:19,435 running build 2026-05-22T14:22:19,435 running build_py 2026-05-22T14:22:19,437 creating build/lib/htmd 2026-05-22T14:22:19,439 copying htmd/kinetics.py -> build/lib/htmd 2026-05-22T14:22:19,442 copying htmd/session.py -> build/lib/htmd 2026-05-22T14:22:19,444 copying htmd/metricdata.py -> build/lib/htmd 2026-05-22T14:22:19,447 copying htmd/ui.py -> build/lib/htmd 2026-05-22T14:22:19,449 copying htmd/units.py -> build/lib/htmd 2026-05-22T14:22:19,451 copying htmd/license.py -> build/lib/htmd 2026-05-22T14:22:19,453 copying htmd/__init__.py -> build/lib/htmd 2026-05-22T14:22:19,455 copying htmd/decorators.py -> build/lib/htmd 2026-05-22T14:22:19,456 copying htmd/model.py -> build/lib/htmd 2026-05-22T14:22:19,460 copying htmd/versionwarnings.py -> build/lib/htmd 2026-05-22T14:22:19,461 copying htmd/simlist.py -> build/lib/htmd 2026-05-22T14:22:19,464 copying htmd/dock.py -> build/lib/htmd 2026-05-22T14:22:19,466 copying htmd/latest.py -> build/lib/htmd 2026-05-22T14:22:19,468 copying htmd/util.py -> build/lib/htmd 2026-05-22T14:22:19,470 copying htmd/config.py -> build/lib/htmd 2026-05-22T14:22:19,472 copying htmd/home.py -> build/lib/htmd 2026-05-22T14:22:19,474 copying htmd/pathplanning.py -> build/lib/htmd 2026-05-22T14:22:19,476 copying htmd/parallelprogress.py -> build/lib/htmd 2026-05-22T14:22:19,478 copying htmd/metricdatagenerator.py -> build/lib/htmd 2026-05-22T14:22:19,480 copying htmd/mutualinformation.py -> build/lib/htmd 2026-05-22T14:22:19,484 creating build/lib/htmd/projections 2026-05-22T14:22:19,485 copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections 2026-05-22T14:22:19,487 copying htmd/projections/__init__.py -> build/lib/htmd/projections 2026-05-22T14:22:19,489 copying htmd/projections/gwpca.py -> build/lib/htmd/projections 2026-05-22T14:22:19,491 copying htmd/projections/tica.py -> build/lib/htmd/projections 2026-05-22T14:22:19,493 copying htmd/projections/metric.py -> build/lib/htmd/projections 2026-05-22T14:22:19,496 creating build/lib/htmd/builder 2026-05-22T14:22:19,497 copying htmd/builder/_ambertools.py -> build/lib/htmd/builder 2026-05-22T14:22:19,500 copying htmd/builder/builder.py -> build/lib/htmd/builder 2026-05-22T14:22:19,502 copying htmd/builder/openff.py -> build/lib/htmd/builder 2026-05-22T14:22:19,505 copying htmd/builder/__init__.py -> build/lib/htmd/builder 2026-05-22T14:22:19,507 copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder 2026-05-22T14:22:19,510 copying htmd/builder/nonstandard.py -> build/lib/htmd/builder 2026-05-22T14:22:19,513 copying htmd/builder/charmm.py -> build/lib/htmd/builder 2026-05-22T14:22:19,516 copying htmd/builder/solvate.py -> build/lib/htmd/builder 2026-05-22T14:22:19,518 copying htmd/builder/ionize.py -> build/lib/htmd/builder 2026-05-22T14:22:19,521 copying htmd/builder/amber.py -> build/lib/htmd/builder 2026-05-22T14:22:19,524 creating build/lib/htmd/adaptive 2026-05-22T14:22:19,525 copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive 2026-05-22T14:22:19,528 copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive 2026-05-22T14:22:19,531 copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive 2026-05-22T14:22:19,533 copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive 2026-05-22T14:22:19,535 copying htmd/adaptive/util.py -> build/lib/htmd/adaptive 2026-05-22T14:22:19,537 copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive 2026-05-22T14:22:19,539 copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive 2026-05-22T14:22:19,542 creating build/lib/htmd/membranebuilder 2026-05-22T14:22:19,543 copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder 2026-05-22T14:22:19,546 copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder 2026-05-22T14:22:19,548 copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder 2026-05-22T14:22:19,550 copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder 2026-05-22T14:22:19,552 copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder 2026-05-22T14:22:19,555 creating build/lib/htmd/clustering 2026-05-22T14:22:19,555 copying htmd/clustering/__init__.py -> build/lib/htmd/clustering 2026-05-22T14:22:19,557 copying htmd/clustering/regular.py -> build/lib/htmd/clustering 2026-05-22T14:22:19,559 copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering 2026-05-22T14:22:19,610 creating build/lib/htmd/share 2026-05-22T14:22:19,611 copying htmd/share/license-checker -> build/lib/htmd/share 2026-05-22T14:22:19,620 creating build/lib/htmd/share/builder 2026-05-22T14:22:19,621 copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder 2026-05-22T14:22:19,628 copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder 2026-05-22T14:22:19,631 copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder 2026-05-22T14:22:19,633 creating build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,634 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,637 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,639 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,641 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,643 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,645 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,647 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,650 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,652 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,654 copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,656 copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,658 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,660 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,663 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,665 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,667 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,669 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,671 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,673 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,675 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,677 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,679 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,681 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,683 copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,685 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,687 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,689 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,692 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,694 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,696 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,698 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,700 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,703 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,705 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,707 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,709 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,711 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,713 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,716 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,718 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,720 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,722 copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,724 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,727 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,729 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,731 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,733 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,735 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,738 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,740 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,742 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,745 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,747 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,749 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,751 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,753 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,755 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,758 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,760 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,762 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,764 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,766 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,768 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,771 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,773 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,775 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,777 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,779 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,782 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,784 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,786 copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,788 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,790 copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,792 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,794 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,796 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,798 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,800 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,803 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,805 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,807 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,809 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,811 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,813 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,815 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,817 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,819 copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,821 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,824 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,826 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,828 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,830 copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,832 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,834 copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,837 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,839 copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,841 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,843 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,846 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,848 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,850 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,852 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,855 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,857 copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,859 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,861 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,863 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,866 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,868 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,870 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,872 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,874 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,876 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,879 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,880 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,882 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,885 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,887 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,889 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,891 copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,893 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,895 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,897 copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,899 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,901 copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,905 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,907 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,910 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,912 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,915 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,917 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,919 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:19,921 creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:19,922 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:19,924 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:19,927 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:19,931 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:19,933 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:19,935 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:19,938 creating build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,939 copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,941 copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,943 copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,945 copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,947 copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,950 copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,952 copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,954 copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,957 copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,960 copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,962 copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,964 copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,968 copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,970 copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,973 copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,975 copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,977 copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,979 copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,982 copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,984 copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,987 copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,989 copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:19,991 creating build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:19,992 copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:19,994 copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:19,996 copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:19,998 copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,001 copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,003 copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,005 copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,007 copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,009 copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,011 copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,013 copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,015 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,017 copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,019 copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,021 copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,023 copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,025 copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,027 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,029 copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,031 copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,033 copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,035 copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,037 copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,042 copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,044 copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,046 copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,048 copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,050 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,052 copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,054 copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,057 copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,059 copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,061 copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,063 copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,065 copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,067 copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,069 copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,071 copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,074 copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,076 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,079 copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,081 copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,083 copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,085 copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,087 copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,089 copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,091 copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,093 copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:20,095 creating build/lib/htmd/share/builder/charmmfiles 2026-05-22T14:22:20,096 copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles 2026-05-22T14:22:20,098 copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles 2026-05-22T14:22:20,100 creating build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,101 copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,104 copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,127 copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,129 copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,133 copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,136 copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,142 copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,145 copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,151 copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,155 copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:20,160 creating build/lib/htmd/share/builder/charmmfiles/str 2026-05-22T14:22:20,161 copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str 2026-05-22T14:22:20,164 creating build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:20,165 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:20,172 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:20,175 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:20,179 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:20,202 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:20,221 creating build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-05-22T14:22:20,222 copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-05-22T14:22:20,224 creating build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,225 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,263 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,266 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,274 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,291 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,304 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,308 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,315 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,329 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,354 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,358 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,363 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,365 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,375 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,380 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,391 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,467 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,470 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,476 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:20,478 creating build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:20,479 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:20,484 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:20,491 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:20,513 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:20,534 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:20,540 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:20,543 creating build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:20,544 copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:20,547 copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:20,549 copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:20,552 copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:20,554 copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:20,556 creating build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,557 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,585 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,589 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,592 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,595 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,601 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,605 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,608 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,610 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,613 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,617 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,622 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:20,624 creating build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,625 copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,632 copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,645 copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,654 copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,657 copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,661 copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,665 copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,669 copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,707 copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,710 copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:20,713 creating build/lib/htmd/share/builder/caps 2026-05-22T14:22:20,714 copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps 2026-05-22T14:22:20,716 copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps 2026-05-22T14:22:20,718 copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps 2026-05-22T14:22:20,720 copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps 2026-05-22T14:22:20,722 copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps 2026-05-22T14:22:20,724 creating build/lib/htmd/share/solvate 2026-05-22T14:22:20,725 copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate 2026-05-22T14:22:20,760 creating build/lib/htmd/share/membranebuilder/lipids 2026-05-22T14:22:20,762 copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids 2026-05-22T14:22:20,764 creating build/lib/htmd/share/membranebuilder/lipids/sdpc 2026-05-22T14:22:20,765 copying htmd/share/membranebuilder/lipids/sdpc/sdpc.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpc 2026-05-22T14:22:20,767 creating build/lib/htmd/share/membranebuilder/lipids/sdps 2026-05-22T14:22:20,769 copying htmd/share/membranebuilder/lipids/sdps/sdps.cif -> build/lib/htmd/share/membranebuilder/lipids/sdps 2026-05-22T14:22:20,771 creating build/lib/htmd/share/membranebuilder/lipids/dapa 2026-05-22T14:22:20,772 copying htmd/share/membranebuilder/lipids/dapa/dapa.cif -> build/lib/htmd/share/membranebuilder/lipids/dapa 2026-05-22T14:22:20,775 creating build/lib/htmd/share/membranebuilder/lipids/dmpg 2026-05-22T14:22:20,776 copying htmd/share/membranebuilder/lipids/dmpg/dmpg.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpg 2026-05-22T14:22:20,779 creating build/lib/htmd/share/membranebuilder/lipids/dmps 2026-05-22T14:22:20,780 copying htmd/share/membranebuilder/lipids/dmps/dmps.cif -> build/lib/htmd/share/membranebuilder/lipids/dmps 2026-05-22T14:22:20,782 creating build/lib/htmd/share/membranebuilder/lipids/dspc 2026-05-22T14:22:20,783 copying htmd/share/membranebuilder/lipids/dspc/dspc.cif -> build/lib/htmd/share/membranebuilder/lipids/dspc 2026-05-22T14:22:20,786 creating build/lib/htmd/share/membranebuilder/lipids/dmpa 2026-05-22T14:22:20,787 copying htmd/share/membranebuilder/lipids/dmpa/dmpa.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpa 2026-05-22T14:22:20,789 creating build/lib/htmd/share/membranebuilder/lipids/dmpe 2026-05-22T14:22:20,790 copying htmd/share/membranebuilder/lipids/dmpe/dmpe.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpe 2026-05-22T14:22:20,793 creating build/lib/htmd/share/membranebuilder/lipids/dlpc 2026-05-22T14:22:20,794 copying htmd/share/membranebuilder/lipids/dlpc/dlpc.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpc 2026-05-22T14:22:20,797 creating build/lib/htmd/share/membranebuilder/lipids/dopg 2026-05-22T14:22:20,798 copying htmd/share/membranebuilder/lipids/dopg/dopg.cif -> build/lib/htmd/share/membranebuilder/lipids/dopg 2026-05-22T14:22:20,801 creating build/lib/htmd/share/membranebuilder/lipids/dopc 2026-05-22T14:22:20,802 copying htmd/share/membranebuilder/lipids/dopc/dopc.cif -> build/lib/htmd/share/membranebuilder/lipids/dopc 2026-05-22T14:22:20,805 creating build/lib/htmd/share/membranebuilder/lipids/dlps 2026-05-22T14:22:20,806 copying htmd/share/membranebuilder/lipids/dlps/dlps.cif -> build/lib/htmd/share/membranebuilder/lipids/dlps 2026-05-22T14:22:20,809 creating build/lib/htmd/share/membranebuilder/lipids/dspg 2026-05-22T14:22:20,810 copying htmd/share/membranebuilder/lipids/dspg/dspg.cif -> build/lib/htmd/share/membranebuilder/lipids/dspg 2026-05-22T14:22:20,812 creating build/lib/htmd/share/membranebuilder/lipids/dlpg 2026-05-22T14:22:20,813 copying htmd/share/membranebuilder/lipids/dlpg/dlpg.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpg 2026-05-22T14:22:20,816 creating build/lib/htmd/share/membranebuilder/lipids/dmpc 2026-05-22T14:22:20,817 copying htmd/share/membranebuilder/lipids/dmpc/dmpc.cif -> build/lib/htmd/share/membranebuilder/lipids/dmpc 2026-05-22T14:22:20,819 creating build/lib/htmd/share/membranebuilder/lipids/dppc 2026-05-22T14:22:20,820 copying htmd/share/membranebuilder/lipids/dppc/dppc.cif -> build/lib/htmd/share/membranebuilder/lipids/dppc 2026-05-22T14:22:20,823 creating build/lib/htmd/share/membranebuilder/lipids/dspe 2026-05-22T14:22:20,824 copying htmd/share/membranebuilder/lipids/dspe/dspe.cif -> build/lib/htmd/share/membranebuilder/lipids/dspe 2026-05-22T14:22:20,827 creating build/lib/htmd/share/membranebuilder/lipids/chl1 2026-05-22T14:22:20,828 copying htmd/share/membranebuilder/lipids/chl1/chl1.cif -> build/lib/htmd/share/membranebuilder/lipids/chl1 2026-05-22T14:22:20,830 creating build/lib/htmd/share/membranebuilder/lipids/popg 2026-05-22T14:22:20,831 copying htmd/share/membranebuilder/lipids/popg/popg.cif -> build/lib/htmd/share/membranebuilder/lipids/popg 2026-05-22T14:22:20,834 creating build/lib/htmd/share/membranebuilder/lipids/dppe 2026-05-22T14:22:20,835 copying htmd/share/membranebuilder/lipids/dppe/dppe.cif -> build/lib/htmd/share/membranebuilder/lipids/dppe 2026-05-22T14:22:20,838 creating build/lib/htmd/share/membranebuilder/lipids/dapc 2026-05-22T14:22:20,839 copying htmd/share/membranebuilder/lipids/dapc/dapc.cif -> build/lib/htmd/share/membranebuilder/lipids/dapc 2026-05-22T14:22:20,841 creating build/lib/htmd/share/membranebuilder/lipids/popa 2026-05-22T14:22:20,842 copying htmd/share/membranebuilder/lipids/popa/popa.cif -> build/lib/htmd/share/membranebuilder/lipids/popa 2026-05-22T14:22:20,845 creating build/lib/htmd/share/membranebuilder/lipids/sdpg 2026-05-22T14:22:20,846 copying htmd/share/membranebuilder/lipids/sdpg/sdpg.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpg 2026-05-22T14:22:20,849 creating build/lib/htmd/share/membranebuilder/lipids/pope 2026-05-22T14:22:20,850 copying htmd/share/membranebuilder/lipids/pope/pope.cif -> build/lib/htmd/share/membranebuilder/lipids/pope 2026-05-22T14:22:20,853 creating build/lib/htmd/share/membranebuilder/lipids/dape 2026-05-22T14:22:20,854 copying htmd/share/membranebuilder/lipids/dape/dape.cif -> build/lib/htmd/share/membranebuilder/lipids/dape 2026-05-22T14:22:20,856 creating build/lib/htmd/share/membranebuilder/lipids/dppg 2026-05-22T14:22:20,857 copying htmd/share/membranebuilder/lipids/dppg/dppg.cif -> build/lib/htmd/share/membranebuilder/lipids/dppg 2026-05-22T14:22:20,860 creating build/lib/htmd/share/membranebuilder/lipids/sdpe 2026-05-22T14:22:20,861 copying htmd/share/membranebuilder/lipids/sdpe/sdpe.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpe 2026-05-22T14:22:20,864 creating build/lib/htmd/share/membranebuilder/lipids/dops 2026-05-22T14:22:20,865 copying htmd/share/membranebuilder/lipids/dops/dops.cif -> build/lib/htmd/share/membranebuilder/lipids/dops 2026-05-22T14:22:20,868 creating build/lib/htmd/share/membranebuilder/lipids/daps 2026-05-22T14:22:20,869 copying htmd/share/membranebuilder/lipids/daps/daps.cif -> build/lib/htmd/share/membranebuilder/lipids/daps 2026-05-22T14:22:20,872 creating build/lib/htmd/share/membranebuilder/lipids/dopa 2026-05-22T14:22:20,873 copying htmd/share/membranebuilder/lipids/dopa/dopa.cif -> build/lib/htmd/share/membranebuilder/lipids/dopa 2026-05-22T14:22:20,875 creating build/lib/htmd/share/membranebuilder/lipids/dsps 2026-05-22T14:22:20,877 copying htmd/share/membranebuilder/lipids/dsps/dsps.cif -> build/lib/htmd/share/membranebuilder/lipids/dsps 2026-05-22T14:22:20,880 creating build/lib/htmd/share/membranebuilder/lipids/dlpe 2026-05-22T14:22:20,881 copying htmd/share/membranebuilder/lipids/dlpe/dlpe.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpe 2026-05-22T14:22:20,883 creating build/lib/htmd/share/membranebuilder/lipids/popc 2026-05-22T14:22:20,884 copying htmd/share/membranebuilder/lipids/popc/popc.cif -> build/lib/htmd/share/membranebuilder/lipids/popc 2026-05-22T14:22:20,887 creating build/lib/htmd/share/membranebuilder/lipids/dpps 2026-05-22T14:22:20,888 copying htmd/share/membranebuilder/lipids/dpps/dpps.cif -> build/lib/htmd/share/membranebuilder/lipids/dpps 2026-05-22T14:22:20,890 creating build/lib/htmd/share/membranebuilder/lipids/sdpa 2026-05-22T14:22:20,891 copying htmd/share/membranebuilder/lipids/sdpa/sdpa.cif -> build/lib/htmd/share/membranebuilder/lipids/sdpa 2026-05-22T14:22:20,894 creating build/lib/htmd/share/membranebuilder/lipids/pops 2026-05-22T14:22:20,895 copying htmd/share/membranebuilder/lipids/pops/pops.cif -> build/lib/htmd/share/membranebuilder/lipids/pops 2026-05-22T14:22:20,898 creating build/lib/htmd/share/membranebuilder/lipids/dppa 2026-05-22T14:22:20,899 copying htmd/share/membranebuilder/lipids/dppa/dppa.cif -> build/lib/htmd/share/membranebuilder/lipids/dppa 2026-05-22T14:22:20,901 creating build/lib/htmd/share/membranebuilder/lipids/dspa 2026-05-22T14:22:20,902 copying htmd/share/membranebuilder/lipids/dspa/dspa.cif -> build/lib/htmd/share/membranebuilder/lipids/dspa 2026-05-22T14:22:20,905 creating build/lib/htmd/share/membranebuilder/lipids/dope 2026-05-22T14:22:20,906 copying htmd/share/membranebuilder/lipids/dope/dope.cif -> build/lib/htmd/share/membranebuilder/lipids/dope 2026-05-22T14:22:20,909 creating build/lib/htmd/share/membranebuilder/lipids/dapg 2026-05-22T14:22:20,909 copying htmd/share/membranebuilder/lipids/dapg/dapg.cif -> build/lib/htmd/share/membranebuilder/lipids/dapg 2026-05-22T14:22:20,912 creating build/lib/htmd/share/membranebuilder/lipids/dlpa 2026-05-22T14:22:20,913 copying htmd/share/membranebuilder/lipids/dlpa/dlpa.cif -> build/lib/htmd/share/membranebuilder/lipids/dlpa 2026-05-22T14:22:20,932 installing to build/bdist.linux-armv7l/wheel 2026-05-22T14:22:20,933 running install 2026-05-22T14:22:20,956 running install_lib 2026-05-22T14:22:20,964 creating build/bdist.linux-armv7l/wheel 2026-05-22T14:22:20,966 creating build/bdist.linux-armv7l/wheel/htmd 2026-05-22T14:22:20,967 copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:20,970 copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:20,972 copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:20,975 copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:20,977 copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:20,979 creating build/bdist.linux-armv7l/wheel/htmd/projections 2026-05-22T14:22:20,980 copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-05-22T14:22:20,982 copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-05-22T14:22:20,984 copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-05-22T14:22:20,985 copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-05-22T14:22:20,988 copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-05-22T14:22:20,991 creating build/bdist.linux-armv7l/wheel/htmd/builder 2026-05-22T14:22:20,992 copying build/lib/htmd/builder/_ambertools.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-22T14:22:20,994 copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-22T14:22:20,997 copying build/lib/htmd/builder/openff.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-22T14:22:21,000 copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-22T14:22:21,001 copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-22T14:22:21,004 copying build/lib/htmd/builder/nonstandard.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-22T14:22:21,007 copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-22T14:22:21,010 copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-22T14:22:21,012 copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-22T14:22:21,014 copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-05-22T14:22:21,018 copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:21,020 copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:21,022 copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:21,024 copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:21,027 copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:21,029 copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:21,032 creating build/bdist.linux-armv7l/wheel/htmd/adaptive 2026-05-22T14:22:21,033 copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-22T14:22:21,036 copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-22T14:22:21,038 copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-22T14:22:21,041 copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-22T14:22:21,042 copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-22T14:22:21,044 copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-22T14:22:21,047 copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-05-22T14:22:21,050 copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:21,052 copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:21,054 copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:21,056 creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder 2026-05-22T14:22:21,057 copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-05-22T14:22:21,060 copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-05-22T14:22:21,062 copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-05-22T14:22:21,064 copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-05-22T14:22:21,066 copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-05-22T14:22:21,069 creating build/bdist.linux-armv7l/wheel/htmd/share 2026-05-22T14:22:21,071 creating build/bdist.linux-armv7l/wheel/htmd/share/builder 2026-05-22T14:22:21,072 copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-05-22T14:22:21,078 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles 2026-05-22T14:22:21,082 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,083 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,085 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,087 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,088 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,090 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,091 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,093 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,095 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,097 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,098 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,100 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,102 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,104 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,106 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,107 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,109 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,111 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,113 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,115 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,116 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,118 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,120 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,122 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,123 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,125 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,127 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,129 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,130 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,132 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,134 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,136 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,137 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,139 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,141 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,142 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,144 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,146 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,147 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,149 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,151 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,153 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,155 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,157 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,159 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,160 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,162 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,164 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,166 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,168 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,170 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,172 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,174 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,175 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,177 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,179 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,180 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,182 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,184 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,186 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,188 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,189 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,191 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,193 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,195 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,196 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,198 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,200 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,202 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,204 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,206 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,207 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,209 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,211 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,213 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,215 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,217 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,219 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,220 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,222 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,224 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,225 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,227 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,229 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,231 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,233 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,234 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,236 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,238 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,240 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,242 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,244 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,245 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,247 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,249 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,250 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,252 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,254 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,256 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,258 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,260 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,262 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,263 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,265 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,267 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,269 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,271 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,272 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,274 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,276 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,278 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,280 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,282 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,284 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,285 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,287 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,289 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,291 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,293 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,294 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,296 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,298 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,300 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,301 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,303 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,305 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,309 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,311 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,312 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,314 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,316 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,318 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,319 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-05-22T14:22:21,322 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:21,323 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:21,325 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:21,327 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:21,330 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:21,332 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:21,334 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-05-22T14:22:21,337 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,338 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,340 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,342 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,344 copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,346 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,348 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,350 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,351 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,353 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,356 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,357 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,359 copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,362 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,364 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,366 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,368 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,370 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,371 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,373 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,375 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,377 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,379 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-05-22T14:22:21,382 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,383 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,385 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,387 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,389 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,391 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,393 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,394 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,396 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,398 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,400 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,402 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,403 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,405 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,407 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,408 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,410 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,412 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,414 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,416 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,417 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,419 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,421 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,422 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,425 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,427 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,429 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,431 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,433 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,434 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,436 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,438 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,440 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,442 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,444 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,445 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,447 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,449 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,451 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,453 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,454 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,456 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,458 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,460 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,462 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,464 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,465 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,467 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,469 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-05-22T14:22:21,471 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles 2026-05-22T14:22:21,472 copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-05-22T14:22:21,475 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,476 copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,478 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,495 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,497 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,501 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,503 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,508 copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,511 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,515 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,520 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-05-22T14:22:21,524 copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-05-22T14:22:21,526 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str 2026-05-22T14:22:21,528 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:21,530 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:21,535 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:21,539 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:21,544 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:21,578 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-05-22T14:22:21,608 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd 2026-05-22T14:22:21,609 copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd 2026-05-22T14:22:21,614 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,615 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,655 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,658 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,666 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,682 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,696 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,700 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,705 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,731 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,758 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,762 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,767 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,770 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,777 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,781 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,794 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,819 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,822 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,827 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-05-22T14:22:21,829 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:21,830 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:21,835 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:21,841 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:21,861 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:21,880 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:21,885 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-05-22T14:22:21,888 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:21,889 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:21,891 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:21,893 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:21,896 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:21,898 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-05-22T14:22:21,900 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,901 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,929 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,932 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,935 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,937 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,943 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,946 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,949 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,951 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,954 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,958 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,963 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-05-22T14:22:21,965 copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str 2026-05-22T14:22:21,969 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top 2026-05-22T14:22:21,970 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-22T14:22:21,977 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-22T14:22:21,988 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-22T14:22:21,997 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-22T14:22:22,001 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-22T14:22:22,004 copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-22T14:22:22,007 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-22T14:22:22,011 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-22T14:22:22,056 copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-22T14:22:22,058 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-05-22T14:22:22,061 copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-05-22T14:22:22,064 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps 2026-05-22T14:22:22,065 copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-05-22T14:22:22,067 copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-05-22T14:22:22,069 copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-05-22T14:22:22,070 copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-05-22T14:22:22,072 copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-05-22T14:22:22,074 copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-05-22T14:22:22,076 copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share 2026-05-22T14:22:22,086 creating build/bdist.linux-armv7l/wheel/htmd/share/solvate 2026-05-22T14:22:22,087 copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate 2026-05-22T14:22:22,126 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder 2026-05-22T14:22:22,128 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids 2026-05-22T14:22:22,130 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpc 2026-05-22T14:22:22,131 copying build/lib/htmd/share/membranebuilder/lipids/sdpc/sdpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpc 2026-05-22T14:22:22,134 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdps 2026-05-22T14:22:22,135 copying build/lib/htmd/share/membranebuilder/lipids/sdps/sdps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdps 2026-05-22T14:22:22,138 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapa 2026-05-22T14:22:22,139 copying build/lib/htmd/share/membranebuilder/lipids/dapa/dapa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapa 2026-05-22T14:22:22,142 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpg 2026-05-22T14:22:22,143 copying build/lib/htmd/share/membranebuilder/lipids/dmpg/dmpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpg 2026-05-22T14:22:22,146 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmps 2026-05-22T14:22:22,147 copying build/lib/htmd/share/membranebuilder/lipids/dmps/dmps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmps 2026-05-22T14:22:22,150 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspc 2026-05-22T14:22:22,151 copying build/lib/htmd/share/membranebuilder/lipids/dspc/dspc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspc 2026-05-22T14:22:22,154 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpa 2026-05-22T14:22:22,155 copying build/lib/htmd/share/membranebuilder/lipids/dmpa/dmpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpa 2026-05-22T14:22:22,158 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpe 2026-05-22T14:22:22,159 copying build/lib/htmd/share/membranebuilder/lipids/dmpe/dmpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpe 2026-05-22T14:22:22,162 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpc 2026-05-22T14:22:22,163 copying build/lib/htmd/share/membranebuilder/lipids/dlpc/dlpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpc 2026-05-22T14:22:22,166 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopg 2026-05-22T14:22:22,167 copying build/lib/htmd/share/membranebuilder/lipids/dopg/dopg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopg 2026-05-22T14:22:22,170 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopc 2026-05-22T14:22:22,171 copying build/lib/htmd/share/membranebuilder/lipids/dopc/dopc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopc 2026-05-22T14:22:22,173 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlps 2026-05-22T14:22:22,174 copying build/lib/htmd/share/membranebuilder/lipids/dlps/dlps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlps 2026-05-22T14:22:22,178 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspg 2026-05-22T14:22:22,178 copying build/lib/htmd/share/membranebuilder/lipids/dspg/dspg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspg 2026-05-22T14:22:22,181 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpg 2026-05-22T14:22:22,182 copying build/lib/htmd/share/membranebuilder/lipids/dlpg/dlpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpg 2026-05-22T14:22:22,185 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dmpc 2026-05-22T14:22:22,186 copying build/lib/htmd/share/membranebuilder/lipids/dmpc/dmpc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dmpc 2026-05-22T14:22:22,189 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppc 2026-05-22T14:22:22,190 copying build/lib/htmd/share/membranebuilder/lipids/dppc/dppc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppc 2026-05-22T14:22:22,193 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspe 2026-05-22T14:22:22,194 copying build/lib/htmd/share/membranebuilder/lipids/dspe/dspe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspe 2026-05-22T14:22:22,197 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1 2026-05-22T14:22:22,198 copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1 2026-05-22T14:22:22,201 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popg 2026-05-22T14:22:22,202 copying build/lib/htmd/share/membranebuilder/lipids/popg/popg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popg 2026-05-22T14:22:22,205 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppe 2026-05-22T14:22:22,206 copying build/lib/htmd/share/membranebuilder/lipids/dppe/dppe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppe 2026-05-22T14:22:22,209 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapc 2026-05-22T14:22:22,210 copying build/lib/htmd/share/membranebuilder/lipids/dapc/dapc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapc 2026-05-22T14:22:22,213 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popa 2026-05-22T14:22:22,214 copying build/lib/htmd/share/membranebuilder/lipids/popa/popa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popa 2026-05-22T14:22:22,217 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpg 2026-05-22T14:22:22,218 copying build/lib/htmd/share/membranebuilder/lipids/sdpg/sdpg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpg 2026-05-22T14:22:22,221 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope 2026-05-22T14:22:22,222 copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope 2026-05-22T14:22:22,225 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dape 2026-05-22T14:22:22,226 copying build/lib/htmd/share/membranebuilder/lipids/dape/dape.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dape 2026-05-22T14:22:22,229 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppg 2026-05-22T14:22:22,230 copying build/lib/htmd/share/membranebuilder/lipids/dppg/dppg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppg 2026-05-22T14:22:22,233 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpe 2026-05-22T14:22:22,234 copying build/lib/htmd/share/membranebuilder/lipids/sdpe/sdpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpe 2026-05-22T14:22:22,237 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dops 2026-05-22T14:22:22,238 copying build/lib/htmd/share/membranebuilder/lipids/dops/dops.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dops 2026-05-22T14:22:22,241 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/daps 2026-05-22T14:22:22,242 copying build/lib/htmd/share/membranebuilder/lipids/daps/daps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/daps 2026-05-22T14:22:22,245 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dopa 2026-05-22T14:22:22,246 copying build/lib/htmd/share/membranebuilder/lipids/dopa/dopa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dopa 2026-05-22T14:22:22,249 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dsps 2026-05-22T14:22:22,250 copying build/lib/htmd/share/membranebuilder/lipids/dsps/dsps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dsps 2026-05-22T14:22:22,253 copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids 2026-05-22T14:22:22,255 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpe 2026-05-22T14:22:22,256 copying build/lib/htmd/share/membranebuilder/lipids/dlpe/dlpe.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpe 2026-05-22T14:22:22,260 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc 2026-05-22T14:22:22,261 copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc 2026-05-22T14:22:22,264 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dpps 2026-05-22T14:22:22,265 copying build/lib/htmd/share/membranebuilder/lipids/dpps/dpps.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dpps 2026-05-22T14:22:22,268 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/sdpa 2026-05-22T14:22:22,269 copying build/lib/htmd/share/membranebuilder/lipids/sdpa/sdpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/sdpa 2026-05-22T14:22:22,272 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pops 2026-05-22T14:22:22,273 copying build/lib/htmd/share/membranebuilder/lipids/pops/pops.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pops 2026-05-22T14:22:22,276 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dppa 2026-05-22T14:22:22,278 copying build/lib/htmd/share/membranebuilder/lipids/dppa/dppa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dppa 2026-05-22T14:22:22,281 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dspa 2026-05-22T14:22:22,282 copying build/lib/htmd/share/membranebuilder/lipids/dspa/dspa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dspa 2026-05-22T14:22:22,285 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dope 2026-05-22T14:22:22,286 copying build/lib/htmd/share/membranebuilder/lipids/dope/dope.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dope 2026-05-22T14:22:22,289 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dapg 2026-05-22T14:22:22,290 copying build/lib/htmd/share/membranebuilder/lipids/dapg/dapg.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dapg 2026-05-22T14:22:22,293 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/dlpa 2026-05-22T14:22:22,294 copying build/lib/htmd/share/membranebuilder/lipids/dlpa/dlpa.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/dlpa 2026-05-22T14:22:22,297 copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:22,299 creating build/bdist.linux-armv7l/wheel/htmd/clustering 2026-05-22T14:22:22,300 copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-05-22T14:22:22,302 copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-05-22T14:22:22,304 copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-05-22T14:22:22,306 copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:22,308 copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:22,310 copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:22,312 copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:22,314 copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-05-22T14:22:22,316 running install_egg_info 2026-05-22T14:22:22,329 running egg_info 2026-05-22T14:22:22,337 writing acellera_htmd.egg-info/PKG-INFO 2026-05-22T14:22:22,342 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-05-22T14:22:22,344 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-05-22T14:22:22,349 writing requirements to acellera_htmd.egg-info/requires.txt 2026-05-22T14:22:22,350 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-05-22T14:22:22,460 /tmp/pip-build-env-zz2n183i/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-05-22T14:22:22,460 return get_active_overrides().subprocess_timeout 2026-05-22T14:22:22,467 listing git files failed - pretending there aren't any 2026-05-22T14:22:22,471 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-05-22T14:22:22,493 reading manifest template 'MANIFEST.in' 2026-05-22T14:22:22,522 no previously-included directories found matching 'htmd/data' 2026-05-22T14:22:22,523 no previously-included directories found matching '.github' 2026-05-22T14:22:22,525 no previously-included directories found matching 'doc' 2026-05-22T14:22:22,526 no previously-included directories found matching 'package' 2026-05-22T14:22:22,528 no previously-included directories found matching 'tests' 2026-05-22T14:22:22,529 no previously-included directories found matching 'tutorials' 2026-05-22T14:22:22,531 warning: no previously-included files found matching 'Makefile' 2026-05-22T14:22:22,531 adding license file 'LICENSE' 2026-05-22T14:22:22,555 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-05-22T14:22:22,557 Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.8.1-py3.11.egg-info 2026-05-22T14:22:22,569 running install_scripts 2026-05-22T14:22:22,580 creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.8.1.dist-info/WHEEL 2026-05-22T14:22:22,583 creating '/tmp/pip-wheel-8_q378bm/.tmp-g2yhisvr/acellera_htmd-2.8.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-22T14:22:22,586 adding 'acellera_htmd-2.8.1.dist-info/licenses/LICENSE' 2026-05-22T14:22:22,588 adding 'htmd/__init__.py' 2026-05-22T14:22:22,590 adding 'htmd/config.py' 2026-05-22T14:22:22,591 adding 'htmd/decorators.py' 2026-05-22T14:22:22,593 adding 'htmd/dock.py' 2026-05-22T14:22:22,594 adding 'htmd/home.py' 2026-05-22T14:22:22,597 adding 'htmd/kinetics.py' 2026-05-22T14:22:22,598 adding 'htmd/latest.py' 2026-05-22T14:22:22,600 adding 'htmd/license.py' 2026-05-22T14:22:22,607 adding 'htmd/metricdata.py' 2026-05-22T14:22:22,609 adding 'htmd/metricdatagenerator.py' 2026-05-22T14:22:22,618 adding 'htmd/model.py' 2026-05-22T14:22:22,620 adding 'htmd/mutualinformation.py' 2026-05-22T14:22:22,621 adding 'htmd/parallelprogress.py' 2026-05-22T14:22:22,624 adding 'htmd/pathplanning.py' 2026-05-22T14:22:22,625 adding 'htmd/session.py' 2026-05-22T14:22:22,628 adding 'htmd/simlist.py' 2026-05-22T14:22:22,630 adding 'htmd/ui.py' 2026-05-22T14:22:22,631 adding 'htmd/units.py' 2026-05-22T14:22:22,633 adding 'htmd/util.py' 2026-05-22T14:22:22,634 adding 'htmd/versionwarnings.py' 2026-05-22T14:22:22,635 adding 'htmd/adaptive/__init__.py' 2026-05-22T14:22:22,638 adding 'htmd/adaptive/adaptive.py' 2026-05-22T14:22:22,641 adding 'htmd/adaptive/adaptivebandit.py' 2026-05-22T14:22:22,644 adding 'htmd/adaptive/adaptivegoal.py' 2026-05-22T14:22:22,647 adding 'htmd/adaptive/adaptivegoaleg.py' 2026-05-22T14:22:22,649 adding 'htmd/adaptive/adaptiverun.py' 2026-05-22T14:22:22,651 adding 'htmd/adaptive/util.py' 2026-05-22T14:22:22,652 adding 'htmd/builder/__init__.py' 2026-05-22T14:22:22,654 adding 'htmd/builder/_ambertools.py' 2026-05-22T14:22:22,663 adding 'htmd/builder/amber.py' 2026-05-22T14:22:22,666 adding 'htmd/builder/builder.py' 2026-05-22T14:22:22,670 adding 'htmd/builder/charmm.py' 2026-05-22T14:22:22,673 adding 'htmd/builder/ionize.py' 2026-05-22T14:22:22,674 adding 'htmd/builder/loopmodeler.py' 2026-05-22T14:22:22,687 adding 'htmd/builder/nonstandard.py' 2026-05-22T14:22:22,694 adding 'htmd/builder/openff.py' 2026-05-22T14:22:22,696 adding 'htmd/builder/solvate.py' 2026-05-22T14:22:22,698 adding 'htmd/clustering/__init__.py' 2026-05-22T14:22:22,699 adding 'htmd/clustering/kcenters.py' 2026-05-22T14:22:22,701 adding 'htmd/clustering/regular.py' 2026-05-22T14:22:22,703 adding 'htmd/membranebuilder/__init__.py' 2026-05-22T14:22:22,709 adding 'htmd/membranebuilder/build_membrane.py' 2026-05-22T14:22:22,710 adding 'htmd/membranebuilder/globalminimization.py' 2026-05-22T14:22:22,712 adding 'htmd/membranebuilder/ljfluid.py' 2026-05-22T14:22:22,714 adding 'htmd/membranebuilder/ringpenetration.py' 2026-05-22T14:22:22,716 adding 'htmd/projections/__init__.py' 2026-05-22T14:22:22,717 adding 'htmd/projections/gwpca.py' 2026-05-22T14:22:22,719 adding 'htmd/projections/kmeanstri.py' 2026-05-22T14:22:22,721 adding 'htmd/projections/metric.py' 2026-05-22T14:22:22,723 adding 'htmd/projections/tica.py' 2026-05-22T14:22:22,779 adding 'htmd/share/license-checker' 2026-05-22T14:22:22,811 adding 'htmd/share/builder/charmmlipid2amber.csv' 2026-05-22T14:22:22,814 adding 'htmd/share/builder/triala_capped.cif' 2026-05-22T14:22:22,816 adding 'htmd/share/builder/triala_capped.mmtf' 2026-05-22T14:22:22,818 adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod' 2026-05-22T14:22:22,820 adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi' 2026-05-22T14:22:22,821 adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod' 2026-05-22T14:22:22,823 adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi' 2026-05-22T14:22:22,824 adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod' 2026-05-22T14:22:22,826 adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi' 2026-05-22T14:22:22,827 adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod' 2026-05-22T14:22:22,829 adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi' 2026-05-22T14:22:22,830 adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod' 2026-05-22T14:22:22,832 adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi' 2026-05-22T14:22:22,833 adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod' 2026-05-22T14:22:22,835 adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi' 2026-05-22T14:22:22,836 adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod' 2026-05-22T14:22:22,838 adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi' 2026-05-22T14:22:22,839 adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod' 2026-05-22T14:22:22,840 adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi' 2026-05-22T14:22:22,842 adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod' 2026-05-22T14:22:22,843 adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi' 2026-05-22T14:22:22,845 adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod' 2026-05-22T14:22:22,847 adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi' 2026-05-22T14:22:22,848 adding 'htmd/share/builder/amberfiles/cofactors/README.txt' 2026-05-22T14:22:22,856 adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in' 2026-05-22T14:22:22,860 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod' 2026-05-22T14:22:22,861 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi' 2026-05-22T14:22:22,863 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod' 2026-05-22T14:22:22,864 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi' 2026-05-22T14:22:22,865 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod' 2026-05-22T14:22:22,866 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi' 2026-05-22T14:22:22,868 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod' 2026-05-22T14:22:22,869 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi' 2026-05-22T14:22:22,870 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod' 2026-05-22T14:22:22,871 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi' 2026-05-22T14:22:22,872 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod' 2026-05-22T14:22:22,874 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi' 2026-05-22T14:22:22,875 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod' 2026-05-22T14:22:22,876 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi' 2026-05-22T14:22:22,878 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod' 2026-05-22T14:22:22,879 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi' 2026-05-22T14:22:22,880 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod' 2026-05-22T14:22:22,881 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi' 2026-05-22T14:22:22,883 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod' 2026-05-22T14:22:22,884 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi' 2026-05-22T14:22:22,885 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod' 2026-05-22T14:22:22,886 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi' 2026-05-22T14:22:22,888 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod' 2026-05-22T14:22:22,889 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi' 2026-05-22T14:22:22,890 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod' 2026-05-22T14:22:22,891 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi' 2026-05-22T14:22:22,892 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod' 2026-05-22T14:22:22,894 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi' 2026-05-22T14:22:22,895 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod' 2026-05-22T14:22:22,896 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi' 2026-05-22T14:22:22,898 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod' 2026-05-22T14:22:22,899 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi' 2026-05-22T14:22:22,900 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod' 2026-05-22T14:22:22,902 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi' 2026-05-22T14:22:22,903 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod' 2026-05-22T14:22:22,904 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi' 2026-05-22T14:22:22,905 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod' 2026-05-22T14:22:22,907 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi' 2026-05-22T14:22:22,908 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod' 2026-05-22T14:22:22,909 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi' 2026-05-22T14:22:22,910 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod' 2026-05-22T14:22:22,914 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi' 2026-05-22T14:22:22,915 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod' 2026-05-22T14:22:22,916 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi' 2026-05-22T14:22:22,917 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod' 2026-05-22T14:22:22,919 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi' 2026-05-22T14:22:22,920 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod' 2026-05-22T14:22:22,921 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi' 2026-05-22T14:22:22,922 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod' 2026-05-22T14:22:22,924 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi' 2026-05-22T14:22:22,925 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod' 2026-05-22T14:22:22,926 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi' 2026-05-22T14:22:22,927 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod' 2026-05-22T14:22:22,928 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi' 2026-05-22T14:22:22,929 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod' 2026-05-22T14:22:22,931 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi' 2026-05-22T14:22:22,932 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod' 2026-05-22T14:22:22,933 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi' 2026-05-22T14:22:22,934 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod' 2026-05-22T14:22:22,936 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi' 2026-05-22T14:22:22,937 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod' 2026-05-22T14:22:22,938 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi' 2026-05-22T14:22:22,939 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod' 2026-05-22T14:22:22,941 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi' 2026-05-22T14:22:22,942 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod' 2026-05-22T14:22:22,943 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi' 2026-05-22T14:22:22,944 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod' 2026-05-22T14:22:22,946 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi' 2026-05-22T14:22:22,947 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod' 2026-05-22T14:22:22,948 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi' 2026-05-22T14:22:22,950 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod' 2026-05-22T14:22:22,951 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi' 2026-05-22T14:22:22,952 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod' 2026-05-22T14:22:22,954 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi' 2026-05-22T14:22:22,955 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod' 2026-05-22T14:22:22,956 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi' 2026-05-22T14:22:22,958 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod' 2026-05-22T14:22:22,959 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi' 2026-05-22T14:22:22,960 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod' 2026-05-22T14:22:22,961 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi' 2026-05-22T14:22:22,963 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod' 2026-05-22T14:22:22,964 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi' 2026-05-22T14:22:22,965 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod' 2026-05-22T14:22:22,967 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi' 2026-05-22T14:22:22,968 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod' 2026-05-22T14:22:22,969 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi' 2026-05-22T14:22:22,970 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod' 2026-05-22T14:22:22,972 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi' 2026-05-22T14:22:22,973 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod' 2026-05-22T14:22:22,974 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi' 2026-05-22T14:22:22,975 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod' 2026-05-22T14:22:22,976 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi' 2026-05-22T14:22:22,977 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod' 2026-05-22T14:22:22,979 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi' 2026-05-22T14:22:22,980 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod' 2026-05-22T14:22:22,981 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi' 2026-05-22T14:22:22,982 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod' 2026-05-22T14:22:22,984 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi' 2026-05-22T14:22:22,985 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod' 2026-05-22T14:22:22,986 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi' 2026-05-22T14:22:22,988 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod' 2026-05-22T14:22:22,989 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi' 2026-05-22T14:22:22,990 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod' 2026-05-22T14:22:22,991 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi' 2026-05-22T14:22:22,992 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod' 2026-05-22T14:22:22,994 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi' 2026-05-22T14:22:22,995 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod' 2026-05-22T14:22:22,996 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi' 2026-05-22T14:22:22,997 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod' 2026-05-22T14:22:22,998 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi' 2026-05-22T14:22:23,000 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod' 2026-05-22T14:22:23,001 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi' 2026-05-22T14:22:23,002 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod' 2026-05-22T14:22:23,004 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi' 2026-05-22T14:22:23,005 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod' 2026-05-22T14:22:23,007 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi' 2026-05-22T14:22:23,008 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod' 2026-05-22T14:22:23,009 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi' 2026-05-22T14:22:23,010 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod' 2026-05-22T14:22:23,012 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi' 2026-05-22T14:22:23,013 adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt' 2026-05-22T14:22:23,014 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod' 2026-05-22T14:22:23,016 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi' 2026-05-22T14:22:23,017 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod' 2026-05-22T14:22:23,018 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi' 2026-05-22T14:22:23,019 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod' 2026-05-22T14:22:23,021 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi' 2026-05-22T14:22:23,022 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod' 2026-05-22T14:22:23,023 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi' 2026-05-22T14:22:23,024 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod' 2026-05-22T14:22:23,026 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi' 2026-05-22T14:22:23,047 adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in' 2026-05-22T14:22:23,050 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt' 2026-05-22T14:22:23,051 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod' 2026-05-22T14:22:23,056 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib' 2026-05-22T14:22:23,058 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in' 2026-05-22T14:22:23,060 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log' 2026-05-22T14:22:23,061 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15' 2026-05-22T14:22:23,063 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod' 2026-05-22T14:22:23,064 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi' 2026-05-22T14:22:23,065 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod' 2026-05-22T14:22:23,067 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi' 2026-05-22T14:22:23,068 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod' 2026-05-22T14:22:23,069 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi' 2026-05-22T14:22:23,070 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod' 2026-05-22T14:22:23,071 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi' 2026-05-22T14:22:23,072 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod' 2026-05-22T14:22:23,074 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi' 2026-05-22T14:22:23,075 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod' 2026-05-22T14:22:23,076 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi' 2026-05-22T14:22:23,077 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod' 2026-05-22T14:22:23,079 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi' 2026-05-22T14:22:23,080 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod' 2026-05-22T14:22:23,081 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi' 2026-05-22T14:22:23,082 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod' 2026-05-22T14:22:23,083 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi' 2026-05-22T14:22:23,085 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod' 2026-05-22T14:22:23,086 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi' 2026-05-22T14:22:23,087 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod' 2026-05-22T14:22:23,089 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi' 2026-05-22T14:22:23,090 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod' 2026-05-22T14:22:23,091 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi' 2026-05-22T14:22:23,092 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod' 2026-05-22T14:22:23,093 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi' 2026-05-22T14:22:23,094 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod' 2026-05-22T14:22:23,096 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi' 2026-05-22T14:22:23,097 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod' 2026-05-22T14:22:23,098 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi' 2026-05-22T14:22:23,099 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod' 2026-05-22T14:22:23,101 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi' 2026-05-22T14:22:23,102 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod' 2026-05-22T14:22:23,103 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi' 2026-05-22T14:22:23,104 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod' 2026-05-22T14:22:23,106 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi' 2026-05-22T14:22:23,107 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod' 2026-05-22T14:22:23,109 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi' 2026-05-22T14:22:23,110 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod' 2026-05-22T14:22:23,111 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi' 2026-05-22T14:22:23,112 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod' 2026-05-22T14:22:23,114 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi' 2026-05-22T14:22:23,115 adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt' 2026-05-22T14:22:23,116 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod' 2026-05-22T14:22:23,117 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi' 2026-05-22T14:22:23,119 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod' 2026-05-22T14:22:23,120 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi' 2026-05-22T14:22:23,128 adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in' 2026-05-22T14:22:23,130 adding 'htmd/share/builder/caps/ACE.cif' 2026-05-22T14:22:23,131 adding 'htmd/share/builder/caps/ACE.pdb' 2026-05-22T14:22:23,132 adding 'htmd/share/builder/caps/NHE.pdb' 2026-05-22T14:22:23,134 adding 'htmd/share/builder/caps/NME.cif' 2026-05-22T14:22:23,135 adding 'htmd/share/builder/caps/NME.pdb' 2026-05-22T14:22:23,136 adding 'htmd/share/builder/charmmfiles/Makefile' 2026-05-22T14:22:23,138 adding 'htmd/share/builder/charmmfiles/README.md' 2026-05-22T14:22:23,151 adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm' 2026-05-22T14:22:23,165 adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm' 2026-05-22T14:22:23,168 adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm' 2026-05-22T14:22:23,183 adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm' 2026-05-22T14:22:23,270 adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm' 2026-05-22T14:22:23,280 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm' 2026-05-22T14:22:23,283 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm' 2026-05-22T14:22:23,291 adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm' 2026-05-22T14:22:23,306 adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm' 2026-05-22T14:22:23,309 adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm' 2026-05-22T14:22:23,312 adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str' 2026-05-22T14:22:23,389 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str' 2026-05-22T14:22:23,398 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str' 2026-05-22T14:22:23,528 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str' 2026-05-22T14:22:23,556 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str' 2026-05-22T14:22:23,568 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str' 2026-05-22T14:22:23,571 adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str' 2026-05-22T14:22:23,610 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str' 2026-05-22T14:22:23,643 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str' 2026-05-22T14:22:23,750 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str' 2026-05-22T14:22:23,756 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str' 2026-05-22T14:22:23,769 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str' 2026-05-22T14:22:23,776 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str' 2026-05-22T14:22:23,868 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str' 2026-05-22T14:22:23,893 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str' 2026-05-22T14:22:23,912 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str' 2026-05-22T14:22:24,004 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str' 2026-05-22T14:22:24,015 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str' 2026-05-22T14:22:24,278 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str' 2026-05-22T14:22:24,395 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str' 2026-05-22T14:22:24,457 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str' 2026-05-22T14:22:24,473 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str' 2026-05-22T14:22:24,482 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str' 2026-05-22T14:22:24,498 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str' 2026-05-22T14:22:24,509 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str' 2026-05-22T14:22:24,517 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str' 2026-05-22T14:22:24,519 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str' 2026-05-22T14:22:24,521 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str' 2026-05-22T14:22:24,522 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str' 2026-05-22T14:22:24,523 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str' 2026-05-22T14:22:24,525 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str' 2026-05-22T14:22:24,538 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str' 2026-05-22T14:22:24,564 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str' 2026-05-22T14:22:24,585 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str' 2026-05-22T14:22:24,590 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str' 2026-05-22T14:22:24,719 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str' 2026-05-22T14:22:24,856 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str' 2026-05-22T14:22:24,866 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str' 2026-05-22T14:22:24,868 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str' 2026-05-22T14:22:24,881 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str' 2026-05-22T14:22:24,905 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str' 2026-05-22T14:22:24,908 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str' 2026-05-22T14:22:24,911 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str' 2026-05-22T14:22:24,914 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str' 2026-05-22T14:22:24,925 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str' 2026-05-22T14:22:25,123 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str' 2026-05-22T14:22:25,145 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str' 2026-05-22T14:22:25,149 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str' 2026-05-22T14:22:25,158 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str' 2026-05-22T14:22:25,167 adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf' 2026-05-22T14:22:25,177 adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf' 2026-05-22T14:22:25,183 adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf' 2026-05-22T14:22:25,209 adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf' 2026-05-22T14:22:25,514 adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf' 2026-05-22T14:22:25,592 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf' 2026-05-22T14:22:25,642 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf' 2026-05-22T14:22:25,649 adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf' 2026-05-22T14:22:25,659 adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf' 2026-05-22T14:22:25,660 adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf' 2026-05-22T14:22:25,663 adding 'htmd/share/membranebuilder/lipids/lipiddb.csv' 2026-05-22T14:22:25,665 adding 'htmd/share/membranebuilder/lipids/chl1/chl1.cif' 2026-05-22T14:22:25,668 adding 'htmd/share/membranebuilder/lipids/dapa/dapa.cif' 2026-05-22T14:22:25,671 adding 'htmd/share/membranebuilder/lipids/dapc/dapc.cif' 2026-05-22T14:22:25,674 adding 'htmd/share/membranebuilder/lipids/dape/dape.cif' 2026-05-22T14:22:25,677 adding 'htmd/share/membranebuilder/lipids/dapg/dapg.cif' 2026-05-22T14:22:25,680 adding 'htmd/share/membranebuilder/lipids/daps/daps.cif' 2026-05-22T14:22:25,682 adding 'htmd/share/membranebuilder/lipids/dlpa/dlpa.cif' 2026-05-22T14:22:25,685 adding 'htmd/share/membranebuilder/lipids/dlpc/dlpc.cif' 2026-05-22T14:22:25,687 adding 'htmd/share/membranebuilder/lipids/dlpe/dlpe.cif' 2026-05-22T14:22:25,690 adding 'htmd/share/membranebuilder/lipids/dlpg/dlpg.cif' 2026-05-22T14:22:25,692 adding 'htmd/share/membranebuilder/lipids/dlps/dlps.cif' 2026-05-22T14:22:25,695 adding 'htmd/share/membranebuilder/lipids/dmpa/dmpa.cif' 2026-05-22T14:22:25,698 adding 'htmd/share/membranebuilder/lipids/dmpc/dmpc.cif' 2026-05-22T14:22:25,700 adding 'htmd/share/membranebuilder/lipids/dmpe/dmpe.cif' 2026-05-22T14:22:25,703 adding 'htmd/share/membranebuilder/lipids/dmpg/dmpg.cif' 2026-05-22T14:22:25,705 adding 'htmd/share/membranebuilder/lipids/dmps/dmps.cif' 2026-05-22T14:22:25,708 adding 'htmd/share/membranebuilder/lipids/dopa/dopa.cif' 2026-05-22T14:22:25,711 adding 'htmd/share/membranebuilder/lipids/dopc/dopc.cif' 2026-05-22T14:22:25,714 adding 'htmd/share/membranebuilder/lipids/dope/dope.cif' 2026-05-22T14:22:25,717 adding 'htmd/share/membranebuilder/lipids/dopg/dopg.cif' 2026-05-22T14:22:25,720 adding 'htmd/share/membranebuilder/lipids/dops/dops.cif' 2026-05-22T14:22:25,722 adding 'htmd/share/membranebuilder/lipids/dppa/dppa.cif' 2026-05-22T14:22:25,725 adding 'htmd/share/membranebuilder/lipids/dppc/dppc.cif' 2026-05-22T14:22:25,728 adding 'htmd/share/membranebuilder/lipids/dppe/dppe.cif' 2026-05-22T14:22:25,730 adding 'htmd/share/membranebuilder/lipids/dppg/dppg.cif' 2026-05-22T14:22:25,733 adding 'htmd/share/membranebuilder/lipids/dpps/dpps.cif' 2026-05-22T14:22:25,736 adding 'htmd/share/membranebuilder/lipids/dspa/dspa.cif' 2026-05-22T14:22:25,739 adding 'htmd/share/membranebuilder/lipids/dspc/dspc.cif' 2026-05-22T14:22:25,742 adding 'htmd/share/membranebuilder/lipids/dspe/dspe.cif' 2026-05-22T14:22:25,745 adding 'htmd/share/membranebuilder/lipids/dspg/dspg.cif' 2026-05-22T14:22:25,748 adding 'htmd/share/membranebuilder/lipids/dsps/dsps.cif' 2026-05-22T14:22:25,751 adding 'htmd/share/membranebuilder/lipids/popa/popa.cif' 2026-05-22T14:22:25,754 adding 'htmd/share/membranebuilder/lipids/popc/popc.cif' 2026-05-22T14:22:25,757 adding 'htmd/share/membranebuilder/lipids/pope/pope.cif' 2026-05-22T14:22:25,760 adding 'htmd/share/membranebuilder/lipids/popg/popg.cif' 2026-05-22T14:22:25,762 adding 'htmd/share/membranebuilder/lipids/pops/pops.cif' 2026-05-22T14:22:25,765 adding 'htmd/share/membranebuilder/lipids/sdpa/sdpa.cif' 2026-05-22T14:22:25,769 adding 'htmd/share/membranebuilder/lipids/sdpc/sdpc.cif' 2026-05-22T14:22:25,771 adding 'htmd/share/membranebuilder/lipids/sdpe/sdpe.cif' 2026-05-22T14:22:25,774 adding 'htmd/share/membranebuilder/lipids/sdpg/sdpg.cif' 2026-05-22T14:22:25,777 adding 'htmd/share/membranebuilder/lipids/sdps/sdps.cif' 2026-05-22T14:22:26,067 adding 'htmd/share/solvate/wat.pdb' 2026-05-22T14:22:26,082 adding 'acellera_htmd-2.8.1.dist-info/METADATA' 2026-05-22T14:22:26,083 adding 'acellera_htmd-2.8.1.dist-info/WHEEL' 2026-05-22T14:22:26,084 adding 'acellera_htmd-2.8.1.dist-info/entry_points.txt' 2026-05-22T14:22:26,084 adding 'acellera_htmd-2.8.1.dist-info/top_level.txt' 2026-05-22T14:22:26,090 adding 'acellera_htmd-2.8.1.dist-info/RECORD' 2026-05-22T14:22:26,139 removing build/bdist.linux-armv7l/wheel 2026-05-22T14:22:26,355 Building wheel for acellera-htmd (pyproject.toml): finished with status 'done' 2026-05-22T14:22:26,448 Created wheel for acellera-htmd: filename=acellera_htmd-2.8.1-py3-none-any.whl size=4420725 sha256=f99897b1637aa0fc2b78f52ae50a1f451d93c28b45fa17691903c03005d6a4d9 2026-05-22T14:22:26,449 Stored in directory: /tmp/pip-ephem-wheel-cache-w2f9rzxs/wheels/c7/47/61/61b5c6503b9f34dc0eff431fd52a817a1579664ab793ca8b50 2026-05-22T14:22:26,475 Successfully built acellera-htmd 2026-05-22T14:22:26,600 Removed build tracker: '/tmp/pip-build-tracker-c5hezj6c'