2026-05-28T11:50:55,523 Created temporary directory: /tmp/pip-ephem-wheel-cache-4djlnzsm
2026-05-28T11:50:55,524 Created temporary directory: /tmp/pip-build-tracker-2rc8lg93
2026-05-28T11:50:55,525 Initialized build tracking at /tmp/pip-build-tracker-2rc8lg93
2026-05-28T11:50:55,526 Created build tracker: /tmp/pip-build-tracker-2rc8lg93
2026-05-28T11:50:55,526 Entered build tracker: /tmp/pip-build-tracker-2rc8lg93
2026-05-28T11:50:55,527 Created temporary directory: /tmp/pip-wheel-6y2dpqs6
2026-05-28T11:50:55,530 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-28T11:50:55,532 Created temporary directory: /tmp/pip-ephem-wheel-cache-5ubo7d9t
2026-05-28T11:50:55,567 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-28T11:50:55,571 2 location(s) to search for versions of daylily-omics-analysis:
2026-05-28T11:50:55,571 * https://pypi.org/simple/daylily-omics-analysis/
2026-05-28T11:50:55,571 * https://www.piwheels.org/simple/daylily-omics-analysis/
2026-05-28T11:50:55,572 Fetching project page and analyzing links: https://pypi.org/simple/daylily-omics-analysis/
2026-05-28T11:50:55,573 Getting page https://pypi.org/simple/daylily-omics-analysis/
2026-05-28T11:50:55,574 Found index url https://pypi.org/simple
2026-05-28T11:50:55,803 Fetched page https://pypi.org/simple/daylily-omics-analysis/ as application/vnd.pypi.simple.v1+json
2026-05-28T11:50:55,807   Skipping link: No binaries permitted for daylily-omics-analysis: https://files.pythonhosted.org/packages/a7/c0/c7f87fe2429dc16efa2623775fd6c37a32ac341ac5d3b7f8cd6bb14fa835/daylily_omics_analysis-0.7.639-py3-none-any.whl (from https://pypi.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,808   Found link https://files.pythonhosted.org/packages/92/89/e55943c71ae2303a92e8a458fba0e7fe160d25977712ab98ac4671e18814/daylily_omics_analysis-0.7.639.tar.gz (from https://pypi.org/simple/daylily-omics-analysis/), version: 0.7.639
2026-05-28T11:50:55,808   Skipping link: No binaries permitted for daylily-omics-analysis: https://files.pythonhosted.org/packages/2b/91/5d7f9aa2cffbe41c8fc9a1260decd11845a4e3e974398d1c418ca065dc38/daylily_omics_analysis-0.7.641-py3-none-any.whl (from https://pypi.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,809   Skipping link: No binaries permitted for daylily-omics-analysis: https://files.pythonhosted.org/packages/52/06/9c15f7694456c80c6a4227854689944736bac2c5ce406bd3b3071c870ec0/daylily_omics_analysis-0.7.711-py3-none-any.whl (from https://pypi.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,810   Skipping link: No binaries permitted for daylily-omics-analysis: https://files.pythonhosted.org/packages/a8/d5/c4a1cb494388a7c81f0fb19436129b7dc7beeeac6cc84818a6d3fec5b23e/daylily_omics_analysis-0.7.712-py3-none-any.whl (from https://pypi.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,810   Found link https://files.pythonhosted.org/packages/41/c5/d2731e5230fbc90cb6a7432ef958fe13f8aa07a4c9ab00355fb5d59ca681/daylily_omics_analysis-0.7.712.tar.gz (from https://pypi.org/simple/daylily-omics-analysis/), version: 0.7.712
2026-05-28T11:50:55,811   Skipping link: No binaries permitted for daylily-omics-analysis: https://files.pythonhosted.org/packages/b7/37/8ada5ffff048ae93948bf19dab2e1a6efbab724a0b452a0d184b2e45adb3/daylily_omics_analysis-0.7.758-py3-none-any.whl (from https://pypi.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,812   Found link https://files.pythonhosted.org/packages/72/17/9a8258588037750f29dbf4d76a0b84a5e43968f4337de2fc531099f6b1e1/daylily_omics_analysis-0.7.758.tar.gz (from https://pypi.org/simple/daylily-omics-analysis/), version: 0.7.758
2026-05-28T11:50:55,812   Skipping link: No binaries permitted for daylily-omics-analysis: https://files.pythonhosted.org/packages/4a/ec/44d7002b41d105864e471d2648e6dee149e928e6efa9a5312dcfde5b2e32/daylily_omics_analysis-1.0.9-py3-none-any.whl (from https://pypi.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,813   Found link https://files.pythonhosted.org/packages/15/89/f64acab85f213beb76eeb2db97f3a62c1b6d3b313833870403ef7c6975d3/daylily_omics_analysis-1.0.9.tar.gz (from https://pypi.org/simple/daylily-omics-analysis/), version: 1.0.9
2026-05-28T11:50:55,814   Skipping link: No binaries permitted for daylily-omics-analysis: https://files.pythonhosted.org/packages/b8/5b/060fa27e7c43741204ef6a039a00a1c86bf16fde3aa2d3ff5c949ece6c1a/daylily_omics_analysis-2.0.17.dev2-py3-none-any.whl (from https://pypi.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,815   Found link https://files.pythonhosted.org/packages/9d/83/de30b6f612aef698102354b2191adb600b411efda93696644740a8de83f1/daylily_omics_analysis-2.0.17.dev2.tar.gz (from https://pypi.org/simple/daylily-omics-analysis/), version: 2.0.17.dev2
2026-05-28T11:50:55,815   Skipping link: No binaries permitted for daylily-omics-analysis: https://files.pythonhosted.org/packages/13/b3/669b6c401ee1fa75de89888e04f5870217a2e636a5f04afffb667d3f182e/daylily_omics_analysis-2.0.17-py3-none-any.whl (from https://pypi.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,816   Found link https://files.pythonhosted.org/packages/c7/4e/305e45c5b32231d6fc753fff133cfc6dbf07a4cad3c8947673efef062515/daylily_omics_analysis-2.0.17.tar.gz (from https://pypi.org/simple/daylily-omics-analysis/), version: 2.0.17
2026-05-28T11:50:55,816 Fetching project page and analyzing links: https://www.piwheels.org/simple/daylily-omics-analysis/
2026-05-28T11:50:55,817 Getting page https://www.piwheels.org/simple/daylily-omics-analysis/
2026-05-28T11:50:55,818 Found index url https://www.piwheels.org/simple
2026-05-28T11:50:55,987 Fetched page https://www.piwheels.org/simple/daylily-omics-analysis/ as text/html
2026-05-28T11:50:55,990   Skipping link: No binaries permitted for daylily-omics-analysis: https://www.piwheels.org/simple/daylily-omics-analysis/daylily_omics_analysis-2.0.17.dev2-py3-none-any.whl#sha256=a827b408df89061f39883ede13b2c26835532cd881a46246cbb7930f3c8cc564 (from https://www.piwheels.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,991   Skipping link: No binaries permitted for daylily-omics-analysis: https://www.piwheels.org/simple/daylily-omics-analysis/daylily_omics_analysis-1.0.9-py3-none-any.whl#sha256=987722f907dbd4701f4e6f1861c1fc8df3ac455ad450d8c309501fc1620b6e1f (from https://www.piwheels.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,991   Skipping link: No binaries permitted for daylily-omics-analysis: https://www.piwheels.org/simple/daylily-omics-analysis/daylily_omics_analysis-0.7.758-py3-none-any.whl#sha256=f5faa84792a79101018dd514e3a41f818b6a4d4516ba64b0b57cb4a8abed9d90 (from https://www.piwheels.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,992   Skipping link: No binaries permitted for daylily-omics-analysis: https://archive1.piwheels.org/simple/daylily-omics-analysis/daylily_omics_analysis-0.7.712-py3-none-any.whl#sha256=85716a3e6ac641b8cd86f2aad9caa9e18b81e41800e274eb48307c7273c73ad3 (from https://www.piwheels.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,992   Skipping link: No binaries permitted for daylily-omics-analysis: https://archive1.piwheels.org/simple/daylily-omics-analysis/daylily_omics_analysis-0.7.639-py3-none-any.whl#sha256=28b2e6469407505a2e5c924e931b4e0a314f918400fee1db619db09de777df57 (from https://www.piwheels.org/simple/daylily-omics-analysis/)
2026-05-28T11:50:55,993 Skipping link: not a file: https://www.piwheels.org/simple/daylily-omics-analysis/
2026-05-28T11:50:55,993 Skipping link: not a file: https://pypi.org/simple/daylily-omics-analysis/
2026-05-28T11:50:56,013 Given no hashes to check 1 links for project 'daylily-omics-analysis': discarding no candidates
2026-05-28T11:50:56,031 Collecting daylily-omics-analysis==2.0.17
2026-05-28T11:50:56,033   Created temporary directory: /tmp/pip-unpack-urbaevf0
2026-05-28T11:50:56,264   Downloading daylily_omics_analysis-2.0.17.tar.gz (17.1 MB)
2026-05-28T11:51:02,062   Added daylily-omics-analysis==2.0.17 from https://files.pythonhosted.org/packages/c7/4e/305e45c5b32231d6fc753fff133cfc6dbf07a4cad3c8947673efef062515/daylily_omics_analysis-2.0.17.tar.gz to build tracker '/tmp/pip-build-tracker-2rc8lg93'
2026-05-28T11:51:02,067   Created temporary directory: /tmp/pip-build-env-mcn8cpog
2026-05-28T11:51:02,071   Installing build dependencies: started
2026-05-28T11:51:02,073   Running command pip subprocess to install build dependencies
2026-05-28T11:51:03,214   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-05-28T11:51:03,665   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-05-28T11:51:03,688   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-05-28T11:51:05,467   Collecting setuptools>=64
2026-05-28T11:51:05,468     Obtaining dependency information for setuptools>=64 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-05-28T11:51:05,486     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-05-28T11:51:05,830   Collecting setuptools-scm>=8
2026-05-28T11:51:05,831     Obtaining dependency information for setuptools-scm>=8 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata
2026-05-28T11:51:05,847     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB)
2026-05-28T11:51:05,930   Collecting vcs-versioning>=1.0.0.dev0
2026-05-28T11:51:05,931     Obtaining dependency information for vcs-versioning>=1.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata
2026-05-28T11:51:05,945     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl.metadata (1.6 kB)
2026-05-28T11:51:06,130   Collecting packaging>=20
2026-05-28T11:51:06,131     Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-05-28T11:51:06,145     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-05-28T11:51:06,349   Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-05-28T11:51:06,368   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-05-28T11:51:06,387   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-05-28T11:51:06,472   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-05-28T11:51:06,511   Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-05-28T11:51:06,540   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-05-28T11:51:06,566   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-05-28T11:51:06,656   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-05-28T11:51:09,475   Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm
2026-05-28T11:51:13,179     Creating /tmp/pip-build-env-mcn8cpog/overlay/local/bin
2026-05-28T11:51:13,181     changing mode of /tmp/pip-build-env-mcn8cpog/overlay/local/bin/vcs-versioning to 755
2026-05-28T11:51:13,293     changing mode of /tmp/pip-build-env-mcn8cpog/overlay/local/bin/setuptools-scm to 755
2026-05-28T11:51:13,321   Successfully installed packaging-26.2 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1
2026-05-28T11:51:13,614   Installing build dependencies: finished with status 'done'
2026-05-28T11:51:13,622   Getting requirements to build wheel: started
2026-05-28T11:51:13,623   Running command Getting requirements to build wheel
2026-05-28T11:51:14,346   running egg_info
2026-05-28T11:51:14,353   writing daylily_omics_analysis.egg-info/PKG-INFO
2026-05-28T11:51:14,356   writing dependency_links to daylily_omics_analysis.egg-info/dependency_links.txt
2026-05-28T11:51:14,359   writing top-level names to daylily_omics_analysis.egg-info/top_level.txt
2026-05-28T11:51:14,404   /tmp/pip-build-env-mcn8cpog/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-28T11:51:14,404     return get_active_overrides().subprocess_timeout
2026-05-28T11:51:14,413   listing git files failed - pretending there aren't any
2026-05-28T11:51:14,419   reading manifest file 'daylily_omics_analysis.egg-info/SOURCES.txt'
2026-05-28T11:51:14,600   reading manifest template 'MANIFEST.in'
2026-05-28T11:51:14,602   no previously-included directories found matching '.test_data'
2026-05-28T11:51:14,603   no previously-included directories found matching 'resources'
2026-05-28T11:51:14,604   no previously-included directories found matching 'docs/images'
2026-05-28T11:51:14,606   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2026-05-28T11:51:14,609   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2026-05-28T11:51:14,611   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2026-05-28T11:51:14,611   adding license file 'LICENSE'
2026-05-28T11:51:14,641   writing manifest file 'daylily_omics_analysis.egg-info/SOURCES.txt'
2026-05-28T11:51:14,740   Getting requirements to build wheel: finished with status 'done'
2026-05-28T11:51:14,744   Created temporary directory: /tmp/pip-modern-metadata-l_urm591
2026-05-28T11:51:14,746   Preparing metadata (pyproject.toml): started
2026-05-28T11:51:14,747   Running command Preparing metadata (pyproject.toml)
2026-05-28T11:51:15,418   running dist_info
2026-05-28T11:51:15,433   creating /tmp/pip-modern-metadata-l_urm591/daylily_omics_analysis.egg-info
2026-05-28T11:51:15,434   writing /tmp/pip-modern-metadata-l_urm591/daylily_omics_analysis.egg-info/PKG-INFO
2026-05-28T11:51:15,437   writing dependency_links to /tmp/pip-modern-metadata-l_urm591/daylily_omics_analysis.egg-info/dependency_links.txt
2026-05-28T11:51:15,440   writing top-level names to /tmp/pip-modern-metadata-l_urm591/daylily_omics_analysis.egg-info/top_level.txt
2026-05-28T11:51:15,442   writing manifest file '/tmp/pip-modern-metadata-l_urm591/daylily_omics_analysis.egg-info/SOURCES.txt'
2026-05-28T11:51:15,484   /tmp/pip-build-env-mcn8cpog/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-28T11:51:15,485     return get_active_overrides().subprocess_timeout
2026-05-28T11:51:15,492   listing git files failed - pretending there aren't any
2026-05-28T11:51:15,497   reading manifest file '/tmp/pip-modern-metadata-l_urm591/daylily_omics_analysis.egg-info/SOURCES.txt'
2026-05-28T11:51:15,499   reading manifest template 'MANIFEST.in'
2026-05-28T11:51:15,500   no previously-included directories found matching '.test_data'
2026-05-28T11:51:15,501   no previously-included directories found matching 'resources'
2026-05-28T11:51:15,501   no previously-included directories found matching 'docs/images'
2026-05-28T11:51:15,502   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2026-05-28T11:51:15,503   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2026-05-28T11:51:15,504   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2026-05-28T11:51:15,504   adding license file 'LICENSE'
2026-05-28T11:51:15,508   writing manifest file '/tmp/pip-modern-metadata-l_urm591/daylily_omics_analysis.egg-info/SOURCES.txt'
2026-05-28T11:51:15,509   creating '/tmp/pip-modern-metadata-l_urm591/daylily_omics_analysis-2.0.17.dist-info'
2026-05-28T11:51:15,643   Preparing metadata (pyproject.toml): finished with status 'done'
2026-05-28T11:51:15,648   Source in /tmp/pip-wheel-6y2dpqs6/daylily-omics-analysis_0a35bf7a36a9475e88e2b01bfac0709c has version 2.0.17, which satisfies requirement daylily-omics-analysis==2.0.17 from https://files.pythonhosted.org/packages/c7/4e/305e45c5b32231d6fc753fff133cfc6dbf07a4cad3c8947673efef062515/daylily_omics_analysis-2.0.17.tar.gz
2026-05-28T11:51:15,649   Removed daylily-omics-analysis==2.0.17 from https://files.pythonhosted.org/packages/c7/4e/305e45c5b32231d6fc753fff133cfc6dbf07a4cad3c8947673efef062515/daylily_omics_analysis-2.0.17.tar.gz from build tracker '/tmp/pip-build-tracker-2rc8lg93'
2026-05-28T11:51:15,653 Created temporary directory: /tmp/pip-unpack-rsquon7m
2026-05-28T11:51:15,654 Building wheels for collected packages: daylily-omics-analysis
2026-05-28T11:51:15,659   Created temporary directory: /tmp/pip-wheel-790c58pm
2026-05-28T11:51:15,659   Destination directory: /tmp/pip-wheel-790c58pm
2026-05-28T11:51:15,662   Building wheel for daylily-omics-analysis (pyproject.toml): started
2026-05-28T11:51:15,663   Running command Building wheel for daylily-omics-analysis (pyproject.toml)
2026-05-28T11:51:16,312   running bdist_wheel
2026-05-28T11:51:16,347   running build
2026-05-28T11:51:16,348   running build_py
2026-05-28T11:51:16,350   creating build/lib/daylily_omics_analysis
2026-05-28T11:51:16,352   copying daylily_omics_analysis/pipeline_reports.py -> build/lib/daylily_omics_analysis
2026-05-28T11:51:16,355   copying daylily_omics_analysis/evidence_manifest.py -> build/lib/daylily_omics_analysis
2026-05-28T11:51:16,358   copying daylily_omics_analysis/__init__.py -> build/lib/daylily_omics_analysis
2026-05-28T11:51:16,360   copying daylily_omics_analysis/workflow_catalog.py -> build/lib/daylily_omics_analysis
2026-05-28T11:51:16,365   creating build/lib/daylily_omics_analysis/data
2026-05-28T11:51:16,366   copying daylily_omics_analysis/data/workflow_catalog.v1.json -> build/lib/daylily_omics_analysis/data
2026-05-28T11:51:16,385   installing to build/bdist.linux-armv7l/wheel
2026-05-28T11:51:16,386   running install
2026-05-28T11:51:16,409   running install_lib
2026-05-28T11:51:16,418   creating build/bdist.linux-armv7l/wheel
2026-05-28T11:51:16,421   creating build/bdist.linux-armv7l/wheel/daylily_omics_analysis
2026-05-28T11:51:16,422   copying build/lib/daylily_omics_analysis/pipeline_reports.py -> build/bdist.linux-armv7l/wheel/./daylily_omics_analysis
2026-05-28T11:51:16,425   copying build/lib/daylily_omics_analysis/evidence_manifest.py -> build/bdist.linux-armv7l/wheel/./daylily_omics_analysis
2026-05-28T11:51:16,428   copying build/lib/daylily_omics_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./daylily_omics_analysis
2026-05-28T11:51:16,430   creating build/bdist.linux-armv7l/wheel/daylily_omics_analysis/data
2026-05-28T11:51:16,431   copying build/lib/daylily_omics_analysis/data/workflow_catalog.v1.json -> build/bdist.linux-armv7l/wheel/./daylily_omics_analysis/data
2026-05-28T11:51:16,434   copying build/lib/daylily_omics_analysis/workflow_catalog.py -> build/bdist.linux-armv7l/wheel/./daylily_omics_analysis
2026-05-28T11:51:16,437   running install_egg_info
2026-05-28T11:51:16,458   running egg_info
2026-05-28T11:51:16,465   writing daylily_omics_analysis.egg-info/PKG-INFO
2026-05-28T11:51:16,468   writing dependency_links to daylily_omics_analysis.egg-info/dependency_links.txt
2026-05-28T11:51:16,469   writing top-level names to daylily_omics_analysis.egg-info/top_level.txt
2026-05-28T11:51:16,496   /tmp/pip-build-env-mcn8cpog/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-05-28T11:51:16,497     return get_active_overrides().subprocess_timeout
2026-05-28T11:51:16,503   listing git files failed - pretending there aren't any
2026-05-28T11:51:16,507   reading manifest file 'daylily_omics_analysis.egg-info/SOURCES.txt'
2026-05-28T11:51:16,555   reading manifest template 'MANIFEST.in'
2026-05-28T11:51:16,556   no previously-included directories found matching '.test_data'
2026-05-28T11:51:16,557   no previously-included directories found matching 'resources'
2026-05-28T11:51:16,559   no previously-included directories found matching 'docs/images'
2026-05-28T11:51:16,560   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2026-05-28T11:51:16,563   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2026-05-28T11:51:16,565   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2026-05-28T11:51:16,565   adding license file 'LICENSE'
2026-05-28T11:51:16,595   writing manifest file 'daylily_omics_analysis.egg-info/SOURCES.txt'
2026-05-28T11:51:16,597   Copying daylily_omics_analysis.egg-info to build/bdist.linux-armv7l/wheel/./daylily_omics_analysis-2.0.17-py3.11.egg-info
2026-05-28T11:51:16,607   running install_scripts
2026-05-28T11:51:16,617   creating build/bdist.linux-armv7l/wheel/daylily_omics_analysis-2.0.17.dist-info/WHEEL
2026-05-28T11:51:16,620   creating '/tmp/pip-wheel-790c58pm/.tmp-wk0mn8ac/daylily_omics_analysis-2.0.17-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-05-28T11:51:16,622   adding 'daylily_omics_analysis/__init__.py'
2026-05-28T11:51:16,625   adding 'daylily_omics_analysis/evidence_manifest.py'
2026-05-28T11:51:16,627   adding 'daylily_omics_analysis/pipeline_reports.py'
2026-05-28T11:51:16,629   adding 'daylily_omics_analysis/workflow_catalog.py'
2026-05-28T11:51:16,632   adding 'daylily_omics_analysis/data/workflow_catalog.v1.json'
2026-05-28T11:51:16,639   adding 'daylily_omics_analysis-2.0.17.dist-info/licenses/LICENSE'
2026-05-28T11:51:16,641   adding 'daylily_omics_analysis-2.0.17.dist-info/METADATA'
2026-05-28T11:51:16,642   adding 'daylily_omics_analysis-2.0.17.dist-info/WHEEL'
2026-05-28T11:51:16,643   adding 'daylily_omics_analysis-2.0.17.dist-info/top_level.txt'
2026-05-28T11:51:16,643   adding 'daylily_omics_analysis-2.0.17.dist-info/RECORD'
2026-05-28T11:51:16,645   removing build/bdist.linux-armv7l/wheel
2026-05-28T11:51:16,751   Building wheel for daylily-omics-analysis (pyproject.toml): finished with status 'done'
2026-05-28T11:51:16,756   Created wheel for daylily-omics-analysis: filename=daylily_omics_analysis-2.0.17-py3-none-any.whl size=27628 sha256=dbe2ef6c6ef90b56343912cc2b879fcad2e6c7ee44a1d837c9841bff61c47b91
2026-05-28T11:51:16,757   Stored in directory: /tmp/pip-ephem-wheel-cache-5ubo7d9t/wheels/30/34/79/750cdb66fc2afc8c1ea13a9a0cdd23daff9c78e7d621533233
2026-05-28T11:51:16,767 Successfully built daylily-omics-analysis
2026-05-28T11:51:16,771 Removed build tracker: '/tmp/pip-build-tracker-2rc8lg93'