2026-05-28T11:58:05,836 Created temporary directory: /tmp/pip-ephem-wheel-cache-4plud_ou 2026-05-28T11:58:05,838 Created temporary directory: /tmp/pip-build-tracker-6dvowui8 2026-05-28T11:58:05,838 Initialized build tracking at /tmp/pip-build-tracker-6dvowui8 2026-05-28T11:58:05,839 Created build tracker: /tmp/pip-build-tracker-6dvowui8 2026-05-28T11:58:05,839 Entered build tracker: /tmp/pip-build-tracker-6dvowui8 2026-05-28T11:58:05,840 Created temporary directory: /tmp/pip-wheel-o1ernk1j 2026-05-28T11:58:05,843 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-28T11:58:05,845 Created temporary directory: /tmp/pip-ephem-wheel-cache-xtejqjlf 2026-05-28T11:58:05,867 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-28T11:58:05,870 2 location(s) to search for versions of torchref: 2026-05-28T11:58:05,870 * https://pypi.org/simple/torchref/ 2026-05-28T11:58:05,870 * https://www.piwheels.org/simple/torchref/ 2026-05-28T11:58:05,871 Fetching project page and analyzing links: https://pypi.org/simple/torchref/ 2026-05-28T11:58:05,872 Getting page https://pypi.org/simple/torchref/ 2026-05-28T11:58:05,873 Found index url https://pypi.org/simple 2026-05-28T11:58:06,027 Fetched page https://pypi.org/simple/torchref/ as application/vnd.pypi.simple.v1+json 2026-05-28T11:58:06,033 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/64/ac/2604e364cc5df69ccdc7f3c9f0cdccaf9c51e96c4d622e64b508ed42d102/torchref-0.3.0-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9) 2026-05-28T11:58:06,034 Found link https://files.pythonhosted.org/packages/73/7f/9c1e4112b5dd16c6712d7a8542a20f84bfd290f42c79dbcc4124a4df4ec9/torchref-0.3.0.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.0 2026-05-28T11:58:06,035 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/2c/60/fa60e785ed08bc2e5a786869b7143e31881874cf9e87a83b7602322bb6e5/torchref-0.3.1-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9) 2026-05-28T11:58:06,036 Found link https://files.pythonhosted.org/packages/70/0e/584b23bda864347754d7b0c9fcced9ee05dc5f7d3424d8cfd74717b6bb2f/torchref-0.3.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.1 2026-05-28T11:58:06,036 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/e8/b3/f063b38c335c7b0c625fd7306e6b594e5ff453ab41b33317decaa6feadc3/torchref-0.3.2-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9) 2026-05-28T11:58:06,037 Found link https://files.pythonhosted.org/packages/da/78/277f71170bd394e88380562379e2fe3b292acd3eb6d95ce110671da4ef59/torchref-0.3.2.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.2 2026-05-28T11:58:06,038 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/fb/01/2471acb3667c71a9a0d2a93bdfdb998c35e85eea6487641b27ab99b7d0f0/torchref-0.4.1-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,039 Found link https://files.pythonhosted.org/packages/16/bd/cfbdc266a4fe7c8868b100eda000f82419609e89158bda8524efa51748be/torchref-0.4.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.4.1 2026-05-28T11:58:06,040 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/15/37/ed32c8184a2173783ba9429a9a0b2932172539ba3cb7b23f3ca26dfba1fd/torchref-0.4.2-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,041 Found link https://files.pythonhosted.org/packages/ae/0d/52864d8146269e718c1cb7b47a20f899e4035f19e0ccb7e5d59315f65bb4/torchref-0.4.2.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.4.2 2026-05-28T11:58:06,042 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/a7/3a/847415e01c63f1d7d71316d541be7464628096ed37f5fc9020d147463263/torchref-0.4.3-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,043 Found link https://files.pythonhosted.org/packages/cc/11/709f9abb6ad3da0752480f1a77de7d3c311393d6193f89d6ce18cc7d5099/torchref-0.4.3.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.4.3 2026-05-28T11:58:06,044 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/1b/b8/36df377748164e20a46356722963af74331445792bdbf08a0cdf1dbdbbdd/torchref-0.5.0-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,044 Found link https://files.pythonhosted.org/packages/25/f4/c18b875b712da914d708badea4ed1c2312935dc84d561b799c337185cf6e/torchref-0.5.0.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.0 2026-05-28T11:58:06,045 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/26/a0/7aceb00564e0dabc8d2cf6412cf7dba08013709a3ec915d33e40eabf72e0/torchref-0.5.1-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,046 Found link https://files.pythonhosted.org/packages/c8/0e/388f73407fc7bfe62c48f8e6983fd0b167b0739c260c2e08953ecaaac1bb/torchref-0.5.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.1 2026-05-28T11:58:06,046 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/3b/ad/f555bfcd4d9fdf1e3d542b593b2bebadf467e161cf643ff0c263db2cfcc3/torchref-0.5.2-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,047 Found link https://files.pythonhosted.org/packages/4d/d1/961979d80eaa39ceac37b9b8b641c3e2b4076705b775b3bcdcb1054f3642/torchref-0.5.2.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.2 2026-05-28T11:58:06,048 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/89/f8/40a59b5f087446e5b723954f28d67000cacc83cee4d0c6f22923641ffbbc/torchref-0.5.3-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,049 Found link https://files.pythonhosted.org/packages/b2/d6/db2c7811699816ae29d052b1a38f04ac57bb15b612ee962cfa4563e372cb/torchref-0.5.3.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.3 2026-05-28T11:58:06,049 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/05/8e/af744824d6f0bbcb480a1f40240f8d63417e2458910f63195f02b915fc51/torchref-0.5.3.1-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,050 Found link https://files.pythonhosted.org/packages/7e/7d/a3cbaa3b7e0c5d56fca55123e6729a0af5b6cc2fefb6a74398757ff572f0/torchref-0.5.3.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.3.1 2026-05-28T11:58:06,051 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/e4/20/7da0fcbc3788ee87b0ff5e677bcd071ce7a8a7e2e783d8ad7ed728e14438/torchref-0.5.3.2-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,052 Found link https://files.pythonhosted.org/packages/98/f6/2a93f5b259a424ff00311144782900be99214ed4902a24d8f7c4c515f731/torchref-0.5.3.2.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.3.2 2026-05-28T11:58:06,053 Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/7b/85/801338d9e296adc18623161927648552377ae57b808cc59e315364b98955/torchref-0.5.3.3-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,054 Found link https://files.pythonhosted.org/packages/4b/ac/c250685121447ac23890696b6b0328b9a0763749254074e468ee75170ddf/torchref-0.5.3.3.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.10), version: 0.5.3.3 2026-05-28T11:58:06,055 Fetching project page and analyzing links: https://www.piwheels.org/simple/torchref/ 2026-05-28T11:58:06,055 Getting page https://www.piwheels.org/simple/torchref/ 2026-05-28T11:58:06,056 Found index url https://www.piwheels.org/simple 2026-05-28T11:58:06,251 Fetched page https://www.piwheels.org/simple/torchref/ as text/html 2026-05-28T11:58:06,256 Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.5.3.2-py3-none-any.whl#sha256=0ced7789b04fcace85e8cffbffd713aab0052b002471e2a844b408ddece45e45 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,256 Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.5.3.1-py3-none-any.whl#sha256=8df9f53b64172b5f1fe161b3c065938954fa302a7ce17fe795f1d667463632e8 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,257 Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.5.3-py3-none-any.whl#sha256=46e6766130f0e3c77ae9734e25a717a2ca237cf1f3e3bb23a12a528ddd0b0848 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,257 Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.5.2-py3-none-any.whl#sha256=243d4c01af453def03a1e0667e20d3a8dc738f6af546aa60605b8a99369e41e3 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,258 Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.5.1-py3-none-any.whl#sha256=c9b0bd6e0eba9eb14b81da89125965a0bb458251fd153ba4216811b24c993227 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,258 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.5.0-py3-none-any.whl#sha256=81412a83cb1884393fe067281c4c70763169b28f13a642e80110fdc7eb65b9d2 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,259 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.4.3-py3-none-any.whl#sha256=3224a4185d64c6f2b269ee377bc5c0f6dacf3a13898fd11e73a727a462a2d878 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,260 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.4.2-py3-none-any.whl#sha256=c4c77a7e34aad8245da2d04a76477bdf30f94ca67cd531f721e4bf47ee67114a (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,260 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.4.1-py3-none-any.whl#sha256=51e933f2f0edf7f44aa74d08f32f7530006300c4b6def2437f9257d02b3e175e (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.10) 2026-05-28T11:58:06,261 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.3.2-py3-none-any.whl#sha256=30e0c5727c1872459a9dcff4416e224ff7486dea2f43a6c20dab66a307492093 (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.9) 2026-05-28T11:58:06,261 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.3.1-py3-none-any.whl#sha256=25deb48a634dda8c799c2d7c32d9749bf327e976900dbd2a5fedf435ee5e921f (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.9) 2026-05-28T11:58:06,262 Skipping link: No binaries permitted for torchref: https://archive1.piwheels.org/simple/torchref/torchref-0.3.0-py3-none-any.whl#sha256=3032f506e2c816e7e7638e151ed6e70bf0f6b0213e92f8f790dce96c53c0d65f (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.9) 2026-05-28T11:58:06,262 Skipping link: not a file: https://www.piwheels.org/simple/torchref/ 2026-05-28T11:58:06,263 Skipping link: not a file: https://pypi.org/simple/torchref/ 2026-05-28T11:58:06,283 Given no hashes to check 1 links for project 'torchref': discarding no candidates 2026-05-28T11:58:06,301 Collecting torchref==0.5.3.3 2026-05-28T11:58:06,303 Created temporary directory: /tmp/pip-unpack-w2w_kngm 2026-05-28T11:58:06,455 Downloading torchref-0.5.3.3.tar.gz (3.0 MB) 2026-05-28T11:58:07,695 Added torchref==0.5.3.3 from https://files.pythonhosted.org/packages/4b/ac/c250685121447ac23890696b6b0328b9a0763749254074e468ee75170ddf/torchref-0.5.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-6dvowui8' 2026-05-28T11:58:07,702 Created temporary directory: /tmp/pip-build-env-pxbbygty 2026-05-28T11:58:07,706 Installing build dependencies: started 2026-05-28T11:58:07,708 Running command pip subprocess to install build dependencies 2026-05-28T11:58:08,910 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-28T11:58:09,381 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-28T11:58:09,405 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-28T11:58:11,208 Collecting setuptools>=42 2026-05-28T11:58:11,210 Obtaining dependency information for setuptools>=42 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-05-28T11:58:11,225 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-05-28T11:58:11,458 Collecting wheel 2026-05-28T11:58:11,459 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-05-28T11:58:11,474 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-05-28T11:58:11,656 Collecting packaging>=24.0 2026-05-28T11:58:11,657 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-28T11:58:11,670 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-28T11:58:11,861 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-28T11:58:11,882 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-28T11:58:11,975 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-28T11:58:12,008 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-05-28T11:58:12,036 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-28T11:58:12,117 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-05-28T11:58:14,897 Installing collected packages: setuptools, packaging, wheel 2026-05-28T11:58:18,661 Creating /tmp/pip-build-env-pxbbygty/overlay/local/bin 2026-05-28T11:58:18,664 changing mode of /tmp/pip-build-env-pxbbygty/overlay/local/bin/wheel to 755 2026-05-28T11:58:18,688 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-05-28T11:58:18,977 Installing build dependencies: finished with status 'done' 2026-05-28T11:58:18,984 Getting requirements to build wheel: started 2026-05-28T11:58:18,986 Running command Getting requirements to build wheel 2026-05-28T11:58:19,748 running egg_info 2026-05-28T11:58:19,754 writing torchref.egg-info/PKG-INFO 2026-05-28T11:58:19,762 writing dependency_links to torchref.egg-info/dependency_links.txt 2026-05-28T11:58:19,764 writing entry points to torchref.egg-info/entry_points.txt 2026-05-28T11:58:19,769 writing requirements to torchref.egg-info/requires.txt 2026-05-28T11:58:19,770 writing top-level names to torchref.egg-info/top_level.txt 2026-05-28T11:58:19,868 reading manifest file 'torchref.egg-info/SOURCES.txt' 2026-05-28T11:58:19,884 adding license file 'LICENSE' 2026-05-28T11:58:19,897 writing manifest file 'torchref.egg-info/SOURCES.txt' 2026-05-28T11:58:19,997 Getting requirements to build wheel: finished with status 'done' 2026-05-28T11:58:20,001 Created temporary directory: /tmp/pip-modern-metadata-jypok4nu 2026-05-28T11:58:20,004 Preparing metadata (pyproject.toml): started 2026-05-28T11:58:20,005 Running command Preparing metadata (pyproject.toml) 2026-05-28T11:58:20,708 running dist_info 2026-05-28T11:58:20,719 creating /tmp/pip-modern-metadata-jypok4nu/torchref.egg-info 2026-05-28T11:58:20,720 writing /tmp/pip-modern-metadata-jypok4nu/torchref.egg-info/PKG-INFO 2026-05-28T11:58:20,728 writing dependency_links to /tmp/pip-modern-metadata-jypok4nu/torchref.egg-info/dependency_links.txt 2026-05-28T11:58:20,730 writing entry points to /tmp/pip-modern-metadata-jypok4nu/torchref.egg-info/entry_points.txt 2026-05-28T11:58:20,735 writing requirements to /tmp/pip-modern-metadata-jypok4nu/torchref.egg-info/requires.txt 2026-05-28T11:58:20,736 writing top-level names to /tmp/pip-modern-metadata-jypok4nu/torchref.egg-info/top_level.txt 2026-05-28T11:58:20,738 writing manifest file '/tmp/pip-modern-metadata-jypok4nu/torchref.egg-info/SOURCES.txt' 2026-05-28T11:58:20,818 reading manifest file '/tmp/pip-modern-metadata-jypok4nu/torchref.egg-info/SOURCES.txt' 2026-05-28T11:58:20,820 adding license file 'LICENSE' 2026-05-28T11:58:20,830 writing manifest file '/tmp/pip-modern-metadata-jypok4nu/torchref.egg-info/SOURCES.txt' 2026-05-28T11:58:20,832 creating '/tmp/pip-modern-metadata-jypok4nu/torchref-0.5.3.3.dist-info' 2026-05-28T11:58:20,965 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-28T11:58:20,971 Source in /tmp/pip-wheel-o1ernk1j/torchref_9fd97cdf383e431aa3a06eef1526205c has version 0.5.3.3, which satisfies requirement torchref==0.5.3.3 from https://files.pythonhosted.org/packages/4b/ac/c250685121447ac23890696b6b0328b9a0763749254074e468ee75170ddf/torchref-0.5.3.3.tar.gz 2026-05-28T11:58:20,972 Removed torchref==0.5.3.3 from https://files.pythonhosted.org/packages/4b/ac/c250685121447ac23890696b6b0328b9a0763749254074e468ee75170ddf/torchref-0.5.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-6dvowui8' 2026-05-28T11:58:20,978 Created temporary directory: /tmp/pip-unpack-8y20ydhw 2026-05-28T11:58:20,979 Building wheels for collected packages: torchref 2026-05-28T11:58:20,985 Created temporary directory: /tmp/pip-wheel-ggr9tnj5 2026-05-28T11:58:20,985 Destination directory: /tmp/pip-wheel-ggr9tnj5 2026-05-28T11:58:20,988 Building wheel for torchref (pyproject.toml): started 2026-05-28T11:58:20,989 Running command Building wheel for torchref (pyproject.toml) 2026-05-28T11:58:21,661 running bdist_wheel 2026-05-28T11:58:21,679 running build 2026-05-28T11:58:21,679 running build_py 2026-05-28T11:58:21,686 creating build/lib/torchref 2026-05-28T11:58:21,688 copying torchref/config.py -> build/lib/torchref 2026-05-28T11:58:21,691 copying torchref/__init__.py -> build/lib/torchref 2026-05-28T11:58:21,694 copying torchref/_bootstrap.py -> build/lib/torchref 2026-05-28T11:58:21,697 creating build/lib/torchref/refinement 2026-05-28T11:58:21,698 copying torchref/refinement/loss_state.py -> build/lib/torchref/refinement 2026-05-28T11:58:21,701 copying torchref/refinement/base_refinement.py -> build/lib/torchref/refinement 2026-05-28T11:58:21,705 copying torchref/refinement/__init__.py -> build/lib/torchref/refinement 2026-05-28T11:58:21,707 copying torchref/refinement/logger.py -> build/lib/torchref/refinement 2026-05-28T11:58:21,710 copying torchref/refinement/lbfgs_refinement.py -> build/lib/torchref/refinement 2026-05-28T11:58:21,713 creating build/lib/torchref/symmetry 2026-05-28T11:58:21,714 copying torchref/symmetry/map_symmetry_interpolation.py -> build/lib/torchref/symmetry 2026-05-28T11:58:21,717 copying torchref/symmetry/symmetry.py -> build/lib/torchref/symmetry 2026-05-28T11:58:21,719 copying torchref/symmetry/reciprocal_symmetry.py -> build/lib/torchref/symmetry 2026-05-28T11:58:21,722 copying torchref/symmetry/grid_utils.py -> build/lib/torchref/symmetry 2026-05-28T11:58:21,724 copying torchref/symmetry/map_symmetry.py -> build/lib/torchref/symmetry 2026-05-28T11:58:21,727 copying torchref/symmetry/__init__.py -> build/lib/torchref/symmetry 2026-05-28T11:58:21,730 copying torchref/symmetry/spacegroup.py -> build/lib/torchref/symmetry 2026-05-28T11:58:21,733 copying torchref/symmetry/cell.py -> build/lib/torchref/symmetry 2026-05-28T11:58:21,736 creating build/lib/torchref/utils 2026-05-28T11:58:21,737 copying torchref/utils/utils.py -> build/lib/torchref/utils 2026-05-28T11:58:21,740 copying torchref/utils/hyperparameters.py -> build/lib/torchref/utils 2026-05-28T11:58:21,743 copying torchref/utils/serialization.py -> build/lib/torchref/utils 2026-05-28T11:58:21,745 copying torchref/utils/debug_utils.py -> build/lib/torchref/utils 2026-05-28T11:58:21,748 copying torchref/utils/caching.py -> build/lib/torchref/utils 2026-05-28T11:58:21,750 copying torchref/utils/autograd_ops.py -> build/lib/torchref/utils 2026-05-28T11:58:21,752 copying torchref/utils/stats.py -> build/lib/torchref/utils 2026-05-28T11:58:21,755 copying torchref/utils/gradnorm.py -> build/lib/torchref/utils 2026-05-28T11:58:21,757 copying torchref/utils/device_resolution.py -> build/lib/torchref/utils 2026-05-28T11:58:21,759 copying torchref/utils/loss_validation.py -> build/lib/torchref/utils 2026-05-28T11:58:21,761 copying torchref/utils/timing.py -> build/lib/torchref/utils 2026-05-28T11:58:21,763 copying torchref/utils/__init__.py -> build/lib/torchref/utils 2026-05-28T11:58:21,765 copying torchref/utils/device_mixin.py -> build/lib/torchref/utils 2026-05-28T11:58:21,768 copying torchref/utils/pse.py -> build/lib/torchref/utils 2026-05-28T11:58:21,771 copying torchref/utils/autograd_introspection.py -> build/lib/torchref/utils 2026-05-28T11:58:21,774 creating build/lib/torchref/scripts 2026-05-28T11:58:21,775 copying torchref/scripts/generate_scattering_table.py -> build/lib/torchref/scripts 2026-05-28T11:58:21,778 copying torchref/scripts/__init__.py -> build/lib/torchref/scripts 2026-05-28T11:58:21,781 creating build/lib/torchref/model 2026-05-28T11:58:21,782 copying torchref/model/parameter_wrappers.py -> build/lib/torchref/model 2026-05-28T11:58:21,786 copying torchref/model/model_ft.py -> build/lib/torchref/model 2026-05-28T11:58:21,789 copying torchref/model/model.py -> build/lib/torchref/model 2026-05-28T11:58:21,794 copying torchref/model/mixed_model.py -> build/lib/torchref/model 2026-05-28T11:58:21,797 copying torchref/model/__init__.py -> build/lib/torchref/model 2026-05-28T11:58:21,799 copying torchref/model/sf_ds.py -> build/lib/torchref/model 2026-05-28T11:58:21,802 copying torchref/model/sf_fft.py -> build/lib/torchref/model 2026-05-28T11:58:21,804 copying torchref/model/model_collection.py -> build/lib/torchref/model 2026-05-28T11:58:21,807 copying torchref/model/segmented_internal_coordinates.py -> build/lib/torchref/model 2026-05-28T11:58:21,811 copying torchref/model/internal_coordinates.py -> build/lib/torchref/model 2026-05-28T11:58:21,815 copying torchref/model/closed_segmented_internal_coordinates.py -> build/lib/torchref/model 2026-05-28T11:58:21,820 creating build/lib/torchref/alignment 2026-05-28T11:58:21,822 copying torchref/alignment/sampling.py -> build/lib/torchref/alignment 2026-05-28T11:58:21,824 copying torchref/alignment/transform.py -> build/lib/torchref/alignment 2026-05-28T11:58:21,827 copying torchref/alignment/jax_subpixel_peaks.py -> build/lib/torchref/alignment 2026-05-28T11:58:21,830 copying torchref/alignment/pipeline.py -> build/lib/torchref/alignment 2026-05-28T11:58:21,832 copying torchref/alignment/ball_transform.py -> build/lib/torchref/alignment 2026-05-28T11:58:21,836 copying torchref/alignment/rigid_body.py -> build/lib/torchref/alignment 2026-05-28T11:58:21,839 copying torchref/alignment/__init__.py -> build/lib/torchref/alignment 2026-05-28T11:58:21,841 copying torchref/alignment/distributions.py -> build/lib/torchref/alignment 2026-05-28T11:58:21,844 copying torchref/alignment/clashscore.py -> build/lib/torchref/alignment 2026-05-28T11:58:21,847 copying torchref/alignment/translation.py -> build/lib/torchref/alignment 2026-05-28T11:58:21,850 creating build/lib/torchref/restraints 2026-05-28T11:58:21,851 copying torchref/restraints/library.py -> build/lib/torchref/restraints 2026-05-28T11:58:21,854 copying torchref/restraints/builders_numba.py -> build/lib/torchref/restraints 2026-05-28T11:58:21,857 copying torchref/restraints/ramachandran.py -> build/lib/torchref/restraints 2026-05-28T11:58:21,859 copying torchref/restraints/builders_fast.py -> build/lib/torchref/restraints 2026-05-28T11:58:21,864 copying torchref/restraints/restraints.py -> build/lib/torchref/restraints 2026-05-28T11:58:21,868 copying torchref/restraints/neighbor_search.py -> build/lib/torchref/restraints 2026-05-28T11:58:21,872 copying torchref/restraints/__init__.py -> build/lib/torchref/restraints 2026-05-28T11:58:21,874 copying torchref/restraints/hydrogen_topology.py -> build/lib/torchref/restraints 2026-05-28T11:58:21,877 copying torchref/restraints/restraints_helper.py -> build/lib/torchref/restraints 2026-05-28T11:58:21,880 copying torchref/restraints/builders.py -> build/lib/torchref/restraints 2026-05-28T11:58:21,884 creating build/lib/torchref/maps 2026-05-28T11:58:21,885 copying torchref/maps/map.py -> build/lib/torchref/maps 2026-05-28T11:58:21,888 copying torchref/maps/difference_map.py -> build/lib/torchref/maps 2026-05-28T11:58:21,891 copying torchref/maps/__init__.py -> build/lib/torchref/maps 2026-05-28T11:58:21,893 creating build/lib/torchref/scaling 2026-05-28T11:58:21,894 copying torchref/scaling/collection_scaler.py -> build/lib/torchref/scaling 2026-05-28T11:58:21,897 copying torchref/scaling/scaler_base.py -> build/lib/torchref/scaling 2026-05-28T11:58:21,900 copying torchref/scaling/scaler.py -> build/lib/torchref/scaling 2026-05-28T11:58:21,903 copying torchref/scaling/__init__.py -> build/lib/torchref/scaling 2026-05-28T11:58:21,905 copying torchref/scaling/solvent.py -> build/lib/torchref/scaling 2026-05-28T11:58:21,909 creating build/lib/torchref/io 2026-05-28T11:58:21,910 copying torchref/io/pdb.py -> build/lib/torchref/io 2026-05-28T11:58:21,913 copying torchref/io/mtz.py -> build/lib/torchref/io 2026-05-28T11:58:21,916 copying torchref/io/data_router.py -> build/lib/torchref/io 2026-05-28T11:58:21,919 copying torchref/io/ihm_mapping.py -> build/lib/torchref/io 2026-05-28T11:58:21,921 copying torchref/io/ihm.py -> build/lib/torchref/io 2026-05-28T11:58:21,924 copying torchref/io/__init__.py -> build/lib/torchref/io 2026-05-28T11:58:21,926 copying torchref/io/cif_readers.py -> build/lib/torchref/io 2026-05-28T11:58:21,930 copying torchref/io/metadata.py -> build/lib/torchref/io 2026-05-28T11:58:21,933 copying torchref/io/cif.py -> build/lib/torchref/io 2026-05-28T11:58:21,937 creating build/lib/torchref/base 2026-05-28T11:58:21,938 copying torchref/base/CCTBX_related.py -> build/lib/torchref/base 2026-05-28T11:58:21,940 copying torchref/base/__init__.py -> build/lib/torchref/base 2026-05-28T11:58:21,943 copying torchref/base/math_torch.py -> build/lib/torchref/base 2026-05-28T11:58:21,945 copying torchref/base/get_scattering_factor_torch.py -> build/lib/torchref/base 2026-05-28T11:58:21,948 copying torchref/base/french_wilson.py -> build/lib/torchref/base 2026-05-28T11:58:21,951 copying torchref/base/math_numpy.py -> build/lib/torchref/base 2026-05-28T11:58:21,955 creating build/lib/torchref/cli 2026-05-28T11:58:21,956 copying torchref/cli/refine.py -> build/lib/torchref/cli 2026-05-28T11:58:21,959 copying torchref/cli/_common.py -> build/lib/torchref/cli 2026-05-28T11:58:21,961 copying torchref/cli/mtz2map.py -> build/lib/torchref/cli 2026-05-28T11:58:21,964 copying torchref/cli/phased_difference_map.py -> build/lib/torchref/cli 2026-05-28T11:58:21,966 copying torchref/cli/add_metadata.py -> build/lib/torchref/cli 2026-05-28T11:58:21,969 copying torchref/cli/__init__.py -> build/lib/torchref/cli 2026-05-28T11:58:21,971 copying torchref/cli/validate_ded.py -> build/lib/torchref/cli 2026-05-28T11:58:21,974 copying torchref/cli/strip_altlocs.py -> build/lib/torchref/cli 2026-05-28T11:58:21,976 copying torchref/cli/collection_difference_refine.py -> build/lib/torchref/cli 2026-05-28T11:58:21,980 creating build/lib/torchref/kinetic 2026-05-28T11:58:21,981 copying torchref/kinetic/targets.py -> build/lib/torchref/kinetic 2026-05-28T11:58:21,983 copying torchref/kinetic/occupancies.py -> build/lib/torchref/kinetic 2026-05-28T11:58:21,986 copying torchref/kinetic/__init__.py -> build/lib/torchref/kinetic 2026-05-28T11:58:21,988 copying torchref/kinetic/kinetics.py -> build/lib/torchref/kinetic 2026-05-28T11:58:21,991 copying torchref/kinetic/refinement.py -> build/lib/torchref/kinetic 2026-05-28T11:58:21,995 creating build/lib/torchref/refinement/targets 2026-05-28T11:58:21,996 copying torchref/refinement/targets/occupancy_floor_diagnostic.py -> build/lib/torchref/refinement/targets 2026-05-28T11:58:21,999 copying torchref/refinement/targets/similarity.py -> build/lib/torchref/refinement/targets 2026-05-28T11:58:22,002 copying torchref/refinement/targets/realspace.py -> build/lib/torchref/refinement/targets 2026-05-28T11:58:22,005 copying torchref/refinement/targets/difference.py -> build/lib/torchref/refinement/targets 2026-05-28T11:58:22,008 copying torchref/refinement/targets/__init__.py -> build/lib/torchref/refinement/targets 2026-05-28T11:58:22,010 copying torchref/refinement/targets/combined.py -> build/lib/torchref/refinement/targets 2026-05-28T11:58:22,014 copying torchref/refinement/targets/base.py -> build/lib/torchref/refinement/targets 2026-05-28T11:58:22,017 copying torchref/refinement/targets/amber_target.py -> build/lib/torchref/refinement/targets 2026-05-28T11:58:22,021 copying torchref/refinement/targets/sampled_ml_phase_target.py -> build/lib/torchref/refinement/targets 2026-05-28T11:58:22,024 copying torchref/refinement/targets/forcefield_target.py -> build/lib/torchref/refinement/targets 2026-05-28T11:58:22,027 creating build/lib/torchref/refinement/optimizers 2026-05-28T11:58:22,029 copying torchref/refinement/optimizers/internal_coord_sa.py -> build/lib/torchref/refinement/optimizers 2026-05-28T11:58:22,032 copying torchref/refinement/optimizers/simulated_annealing.py -> build/lib/torchref/refinement/optimizers 2026-05-28T11:58:22,035 copying torchref/refinement/optimizers/langevin_sa.py -> build/lib/torchref/refinement/optimizers 2026-05-28T11:58:22,038 copying torchref/refinement/optimizers/exploratory_lbfgs.py -> build/lib/torchref/refinement/optimizers 2026-05-28T11:58:22,041 copying torchref/refinement/optimizers/adam_noise.py -> build/lib/torchref/refinement/optimizers 2026-05-28T11:58:22,044 copying torchref/refinement/optimizers/__init__.py -> build/lib/torchref/refinement/optimizers 2026-05-28T11:58:22,046 copying torchref/refinement/optimizers/momentum_sa.py -> build/lib/torchref/refinement/optimizers 2026-05-28T11:58:22,049 creating build/lib/torchref/refinement/weighting 2026-05-28T11:58:22,050 copying torchref/refinement/weighting/random_weighting.py -> build/lib/torchref/refinement/weighting 2026-05-28T11:58:22,053 copying torchref/refinement/weighting/es_policy_training.py -> build/lib/torchref/refinement/weighting 2026-05-28T11:58:22,056 copying torchref/refinement/weighting/policy_weighting.py -> build/lib/torchref/refinement/weighting 2026-05-28T11:58:22,060 copying torchref/refinement/weighting/component_weighting.py -> build/lib/torchref/refinement/weighting 2026-05-28T11:58:22,062 copying torchref/refinement/weighting/__init__.py -> build/lib/torchref/refinement/weighting 2026-05-28T11:58:22,064 copying torchref/refinement/weighting/base_weighting.py -> build/lib/torchref/refinement/weighting 2026-05-28T11:58:22,068 creating build/lib/torchref/refinement/targets/xray 2026-05-28T11:58:22,069 copying torchref/refinement/targets/xray/least_squares.py -> build/lib/torchref/refinement/targets/xray 2026-05-28T11:58:22,071 copying torchref/refinement/targets/xray/maximum_likelihood.py -> build/lib/torchref/refinement/targets/xray 2026-05-28T11:58:22,073 copying torchref/refinement/targets/xray/__init__.py -> build/lib/torchref/refinement/targets/xray 2026-05-28T11:58:22,076 copying torchref/refinement/targets/xray/base.py -> build/lib/torchref/refinement/targets/xray 2026-05-28T11:58:22,078 copying torchref/refinement/targets/xray/gaussian.py -> build/lib/torchref/refinement/targets/xray 2026-05-28T11:58:22,081 copying torchref/refinement/targets/xray/bhattacharyya.py -> build/lib/torchref/refinement/targets/xray 2026-05-28T11:58:22,084 creating build/lib/torchref/refinement/targets/adp 2026-05-28T11:58:22,085 copying torchref/refinement/targets/adp/rigid_bond.py -> build/lib/torchref/refinement/targets/adp 2026-05-28T11:58:22,088 copying torchref/refinement/targets/adp/entropy.py -> build/lib/torchref/refinement/targets/adp 2026-05-28T11:58:22,090 copying torchref/refinement/targets/adp/similarity.py -> build/lib/torchref/refinement/targets/adp 2026-05-28T11:58:22,093 copying torchref/refinement/targets/adp/scaler_log_scale.py -> build/lib/torchref/refinement/targets/adp 2026-05-28T11:58:22,095 copying torchref/refinement/targets/adp/__init__.py -> build/lib/torchref/refinement/targets/adp 2026-05-28T11:58:22,097 copying torchref/refinement/targets/adp/base.py -> build/lib/torchref/refinement/targets/adp 2026-05-28T11:58:22,100 copying torchref/refinement/targets/adp/scaler_u.py -> build/lib/torchref/refinement/targets/adp 2026-05-28T11:58:22,102 copying torchref/refinement/targets/adp/locality.py -> build/lib/torchref/refinement/targets/adp 2026-05-28T11:58:22,106 creating build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,107 copying torchref/refinement/targets/geometry/ramachandran.py -> build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,109 copying torchref/refinement/targets/geometry/non_bonded.py -> build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,112 copying torchref/refinement/targets/geometry/planarity.py -> build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,115 copying torchref/refinement/targets/geometry/non_bonded_h.py -> build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,117 copying torchref/refinement/targets/geometry/bonds.py -> build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,120 copying torchref/refinement/targets/geometry/torsions.py -> build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,123 copying torchref/refinement/targets/geometry/__init__.py -> build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,125 copying torchref/refinement/targets/geometry/angles.py -> build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,127 copying torchref/refinement/targets/geometry/chiral.py -> build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,129 copying torchref/refinement/targets/geometry/base.py -> build/lib/torchref/refinement/targets/geometry 2026-05-28T11:58:22,132 creating build/lib/torchref/io/datasets 2026-05-28T11:58:22,133 copying torchref/io/datasets/reflection_data.py -> build/lib/torchref/io/datasets 2026-05-28T11:58:22,138 copying torchref/io/datasets/fcalc_data.py -> build/lib/torchref/io/datasets 2026-05-28T11:58:22,141 copying torchref/io/datasets/__init__.py -> build/lib/torchref/io/datasets 2026-05-28T11:58:22,143 copying torchref/io/datasets/base.py -> build/lib/torchref/io/datasets 2026-05-28T11:58:22,146 copying torchref/io/datasets/collection.py -> build/lib/torchref/io/datasets 2026-05-28T11:58:22,155 creating build/lib/torchref/base/metrics 2026-05-28T11:58:22,156 copying torchref/base/metrics/loss.py -> build/lib/torchref/base/metrics 2026-05-28T11:58:22,159 copying torchref/base/metrics/__init__.py -> build/lib/torchref/base/metrics 2026-05-28T11:58:22,161 copying torchref/base/metrics/rfactor.py -> build/lib/torchref/base/metrics 2026-05-28T11:58:22,164 creating build/lib/torchref/base/fourier 2026-05-28T11:58:22,165 copying torchref/base/fourier/grid.py -> build/lib/torchref/base/fourier 2026-05-28T11:58:22,168 copying torchref/base/fourier/fft.py -> build/lib/torchref/base/fourier 2026-05-28T11:58:22,170 copying torchref/base/fourier/__init__.py -> build/lib/torchref/base/fourier 2026-05-28T11:58:22,173 creating build/lib/torchref/base/targets 2026-05-28T11:58:22,174 copying torchref/base/targets/xray_gaussian.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,176 copying torchref/base/targets/angle.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,178 copying torchref/base/targets/ramachandran.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,180 copying torchref/base/targets/bond.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,183 copying torchref/base/targets/xray_ls.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,185 copying torchref/base/targets/_common.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,187 copying torchref/base/targets/xray_bhattacharyya.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,189 copying torchref/base/targets/planarity.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,191 copying torchref/base/targets/nonbonded.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,194 copying torchref/base/targets/__init__.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,195 copying torchref/base/targets/adp.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,198 copying torchref/base/targets/chiral.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,200 copying torchref/base/targets/torsion.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,202 copying torchref/base/targets/_dispatch.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,205 copying torchref/base/targets/xray_ml.py -> build/lib/torchref/base/targets 2026-05-28T11:58:22,208 creating build/lib/torchref/base/electron_density 2026-05-28T11:58:22,209 copying torchref/base/electron_density/voxel_utils.py -> build/lib/torchref/base/electron_density 2026-05-28T11:58:22,212 copying torchref/base/electron_density/__init__.py -> build/lib/torchref/base/electron_density 2026-05-28T11:58:22,214 copying torchref/base/electron_density/map_building.py -> build/lib/torchref/base/electron_density 2026-05-28T11:58:22,217 copying torchref/base/electron_density/main.py -> build/lib/torchref/base/electron_density 2026-05-28T11:58:22,220 copying torchref/base/electron_density/solvent_mask.py -> build/lib/torchref/base/electron_density 2026-05-28T11:58:22,224 creating build/lib/torchref/base/alignment 2026-05-28T11:58:22,225 copying torchref/base/alignment/superposition.py -> build/lib/torchref/base/alignment 2026-05-28T11:58:22,228 copying torchref/base/alignment/rotation.py -> build/lib/torchref/base/alignment 2026-05-28T11:58:22,231 copying torchref/base/alignment/normalization.py -> build/lib/torchref/base/alignment 2026-05-28T11:58:22,233 copying torchref/base/alignment/scoring.py -> build/lib/torchref/base/alignment 2026-05-28T11:58:22,235 copying torchref/base/alignment/__init__.py -> build/lib/torchref/base/alignment 2026-05-28T11:58:22,238 creating build/lib/torchref/base/coordinates 2026-05-28T11:58:22,239 copying torchref/base/coordinates/periodic_boundary.py -> build/lib/torchref/base/coordinates 2026-05-28T11:58:22,242 copying torchref/base/coordinates/__init__.py -> build/lib/torchref/base/coordinates 2026-05-28T11:58:22,244 copying torchref/base/coordinates/transforms_numpy.py -> build/lib/torchref/base/coordinates 2026-05-28T11:58:22,246 copying torchref/base/coordinates/transforms_torch.py -> build/lib/torchref/base/coordinates 2026-05-28T11:58:22,249 creating build/lib/torchref/base/scattering 2026-05-28T11:58:22,250 copying torchref/base/scattering/scattering_table.py -> build/lib/torchref/base/scattering 2026-05-28T11:58:22,253 copying torchref/base/scattering/itc92.py -> build/lib/torchref/base/scattering 2026-05-28T11:58:22,256 copying torchref/base/scattering/__init__.py -> build/lib/torchref/base/scattering 2026-05-28T11:58:22,258 copying torchref/base/scattering/anomalous_table.py -> build/lib/torchref/base/scattering 2026-05-28T11:58:22,262 creating build/lib/torchref/base/direct_summation 2026-05-28T11:58:22,263 copying torchref/base/direct_summation/anisotropic.py -> build/lib/torchref/base/direct_summation 2026-05-28T11:58:22,266 copying torchref/base/direct_summation/corrections.py -> build/lib/torchref/base/direct_summation 2026-05-28T11:58:22,268 copying torchref/base/direct_summation/__init__.py -> build/lib/torchref/base/direct_summation 2026-05-28T11:58:22,270 copying torchref/base/direct_summation/isotropic.py -> build/lib/torchref/base/direct_summation 2026-05-28T11:58:22,272 creating build/lib/torchref/base/chain_closure 2026-05-28T11:58:22,273 copying torchref/base/chain_closure/backbone_utils.py -> build/lib/torchref/base/chain_closure 2026-05-28T11:58:22,276 copying torchref/base/chain_closure/__init__.py -> build/lib/torchref/base/chain_closure 2026-05-28T11:58:22,278 copying torchref/base/chain_closure/closure.py -> build/lib/torchref/base/chain_closure 2026-05-28T11:58:22,281 creating build/lib/torchref/base/kernels 2026-05-28T11:58:22,282 copying torchref/base/kernels/optimized_ops.py -> build/lib/torchref/base/kernels 2026-05-28T11:58:22,285 copying torchref/base/kernels/triton_kernel.py -> build/lib/torchref/base/kernels 2026-05-28T11:58:22,288 copying torchref/base/kernels/separable_triton_kernel.py -> build/lib/torchref/base/kernels 2026-05-28T11:58:22,292 copying torchref/base/kernels/__init__.py -> build/lib/torchref/base/kernels 2026-05-28T11:58:22,294 copying torchref/base/kernels/jit_kernel_vectorized_add_to_map.py -> build/lib/torchref/base/kernels 2026-05-28T11:58:22,297 copying torchref/base/kernels/cpu_scatter.py -> build/lib/torchref/base/kernels 2026-05-28T11:58:22,300 creating build/lib/torchref/base/reciprocal 2026-05-28T11:58:22,302 copying torchref/base/reciprocal/symmetry.py -> build/lib/torchref/base/reciprocal 2026-05-28T11:58:22,304 copying torchref/base/reciprocal/hkl.py -> build/lib/torchref/base/reciprocal 2026-05-28T11:58:22,307 copying torchref/base/reciprocal/basis.py -> build/lib/torchref/base/reciprocal 2026-05-28T11:58:22,309 copying torchref/base/reciprocal/__init__.py -> build/lib/torchref/base/reciprocal 2026-05-28T11:58:22,312 copying torchref/base/reciprocal/grid_operations.py -> build/lib/torchref/base/reciprocal 2026-05-28T11:58:22,314 copying torchref/base/reciprocal/interpolation.py -> build/lib/torchref/base/reciprocal 2026-05-28T11:58:22,318 creating build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,320 copying torchref/base/targets/triton/xray_gaussian.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,322 copying torchref/base/targets/triton/angle.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,325 copying torchref/base/targets/triton/ramachandran.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,328 copying torchref/base/targets/triton/bond.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,331 copying torchref/base/targets/triton/xray_ls.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,334 copying torchref/base/targets/triton/place_hydrogens.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,336 copying torchref/base/targets/triton/xray_bhattacharyya.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,339 copying torchref/base/targets/triton/planarity.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,341 copying torchref/base/targets/triton/nonbonded.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,344 copying torchref/base/targets/triton/__init__.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,346 copying torchref/base/targets/triton/adp_simu.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,348 copying torchref/base/targets/triton/chiral.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,351 copying torchref/base/targets/triton/torsion.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,354 copying torchref/base/targets/triton/xray_ml.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,356 copying torchref/base/targets/triton/_dihedral.py -> build/lib/torchref/base/targets/triton 2026-05-28T11:58:22,359 running egg_info 2026-05-28T11:58:22,369 writing torchref.egg-info/PKG-INFO 2026-05-28T11:58:22,377 writing dependency_links to torchref.egg-info/dependency_links.txt 2026-05-28T11:58:22,379 writing entry points to torchref.egg-info/entry_points.txt 2026-05-28T11:58:22,383 writing requirements to torchref.egg-info/requires.txt 2026-05-28T11:58:22,385 writing top-level names to torchref.egg-info/top_level.txt 2026-05-28T11:58:22,454 reading manifest file 'torchref.egg-info/SOURCES.txt' 2026-05-28T11:58:22,470 adding license file 'LICENSE' 2026-05-28T11:58:22,484 writing manifest file 'torchref.egg-info/SOURCES.txt' 2026-05-28T11:58:22,527 creating build/lib/torchref/data 2026-05-28T11:58:22,528 copying torchref/data/atomic_vdw_radii.csv -> build/lib/torchref/data 2026-05-28T11:58:22,531 copying torchref/data/itc92_scattering_factors.pt -> build/lib/torchref/data 2026-05-28T11:58:22,534 copying torchref/data/rama_nll_surfaces.pt -> build/lib/torchref/data 2026-05-28T11:58:22,588 creating build/lib/torchref/data/monomer_library/l 2026-05-28T11:58:22,590 copying torchref/data/monomer_library/l/LYS.cif -> build/lib/torchref/data/monomer_library/l 2026-05-28T11:58:22,594 copying torchref/data/monomer_library/l/LEU.cif -> build/lib/torchref/data/monomer_library/l 2026-05-28T11:58:22,596 creating build/lib/torchref/data/monomer_library/m 2026-05-28T11:58:22,598 copying torchref/data/monomer_library/m/MET.cif -> build/lib/torchref/data/monomer_library/m 2026-05-28T11:58:22,601 copying torchref/data/monomer_library/m/MSE.cif -> build/lib/torchref/data/monomer_library/m 2026-05-28T11:58:22,604 creating build/lib/torchref/data/monomer_library/t 2026-05-28T11:58:22,605 copying torchref/data/monomer_library/t/TPO.cif -> build/lib/torchref/data/monomer_library/t 2026-05-28T11:58:22,609 copying torchref/data/monomer_library/t/THR.cif -> build/lib/torchref/data/monomer_library/t 2026-05-28T11:58:22,611 copying torchref/data/monomer_library/t/TRP.cif -> build/lib/torchref/data/monomer_library/t 2026-05-28T11:58:22,614 copying torchref/data/monomer_library/t/TYR.cif -> build/lib/torchref/data/monomer_library/t 2026-05-28T11:58:22,618 creating build/lib/torchref/data/monomer_library/v 2026-05-28T11:58:22,619 copying torchref/data/monomer_library/v/VAL.cif -> build/lib/torchref/data/monomer_library/v 2026-05-28T11:58:22,622 creating build/lib/torchref/data/monomer_library/g 2026-05-28T11:58:22,623 copying torchref/data/monomer_library/g/GLN.cif -> build/lib/torchref/data/monomer_library/g 2026-05-28T11:58:22,626 copying torchref/data/monomer_library/g/GLU.cif -> build/lib/torchref/data/monomer_library/g 2026-05-28T11:58:22,629 copying torchref/data/monomer_library/g/GLY.cif -> build/lib/torchref/data/monomer_library/g 2026-05-28T11:58:22,632 copying torchref/data/monomer_library/g/G.cif -> build/lib/torchref/data/monomer_library/g 2026-05-28T11:58:22,635 creating build/lib/torchref/data/monomer_library/u 2026-05-28T11:58:22,636 copying torchref/data/monomer_library/u/U.cif -> build/lib/torchref/data/monomer_library/u 2026-05-28T11:58:22,640 creating build/lib/torchref/data/monomer_library/list 2026-05-28T11:58:22,641 copying torchref/data/monomer_library/list/mon_lib_list.cif -> build/lib/torchref/data/monomer_library/list 2026-05-28T11:58:22,702 creating build/lib/torchref/data/monomer_library/d 2026-05-28T11:58:22,704 copying torchref/data/monomer_library/d/DT.cif -> build/lib/torchref/data/monomer_library/d 2026-05-28T11:58:22,707 copying torchref/data/monomer_library/d/DG.cif -> build/lib/torchref/data/monomer_library/d 2026-05-28T11:58:22,710 copying torchref/data/monomer_library/d/DC.cif -> build/lib/torchref/data/monomer_library/d 2026-05-28T11:58:22,714 copying torchref/data/monomer_library/d/DA.cif -> build/lib/torchref/data/monomer_library/d 2026-05-28T11:58:22,717 creating build/lib/torchref/data/monomer_library/s 2026-05-28T11:58:22,718 copying torchref/data/monomer_library/s/SEP.cif -> build/lib/torchref/data/monomer_library/s 2026-05-28T11:58:22,721 copying torchref/data/monomer_library/s/SER.cif -> build/lib/torchref/data/monomer_library/s 2026-05-28T11:58:22,724 creating build/lib/torchref/data/monomer_library/p 2026-05-28T11:58:22,725 copying torchref/data/monomer_library/p/PHE.cif -> build/lib/torchref/data/monomer_library/p 2026-05-28T11:58:22,729 copying torchref/data/monomer_library/p/PRO.cif -> build/lib/torchref/data/monomer_library/p 2026-05-28T11:58:22,732 copying torchref/data/monomer_library/p/PTR.cif -> build/lib/torchref/data/monomer_library/p 2026-05-28T11:58:22,736 creating build/lib/torchref/data/monomer_library/h 2026-05-28T11:58:22,737 copying torchref/data/monomer_library/h/HYP.cif -> build/lib/torchref/data/monomer_library/h 2026-05-28T11:58:22,740 copying torchref/data/monomer_library/h/HOH.cif -> build/lib/torchref/data/monomer_library/h 2026-05-28T11:58:22,742 copying torchref/data/monomer_library/h/HIS.cif -> build/lib/torchref/data/monomer_library/h 2026-05-28T11:58:22,745 creating build/lib/torchref/data/monomer_library/i 2026-05-28T11:58:22,746 copying torchref/data/monomer_library/i/ILE.cif -> build/lib/torchref/data/monomer_library/i 2026-05-28T11:58:22,749 creating build/lib/torchref/data/monomer_library/a 2026-05-28T11:58:22,750 copying torchref/data/monomer_library/a/ARG.cif -> build/lib/torchref/data/monomer_library/a 2026-05-28T11:58:22,754 copying torchref/data/monomer_library/a/ASN.cif -> build/lib/torchref/data/monomer_library/a 2026-05-28T11:58:22,757 copying torchref/data/monomer_library/a/ALA.cif -> build/lib/torchref/data/monomer_library/a 2026-05-28T11:58:22,760 copying torchref/data/monomer_library/a/A.cif -> build/lib/torchref/data/monomer_library/a 2026-05-28T11:58:22,763 copying torchref/data/monomer_library/a/ASP.cif -> build/lib/torchref/data/monomer_library/a 2026-05-28T11:58:22,766 creating build/lib/torchref/data/monomer_library/c 2026-05-28T11:58:22,767 copying torchref/data/monomer_library/c/CYS.cif -> build/lib/torchref/data/monomer_library/c 2026-05-28T11:58:22,770 copying torchref/data/monomer_library/c/C.cif -> build/lib/torchref/data/monomer_library/c 2026-05-28T11:58:22,822 installing to build/bdist.linux-armv7l/wheel 2026-05-28T11:58:22,823 running install 2026-05-28T11:58:22,846 running install_lib 2026-05-28T11:58:22,852 creating build/bdist.linux-armv7l/wheel 2026-05-28T11:58:22,855 creating build/bdist.linux-armv7l/wheel/torchref 2026-05-28T11:58:22,856 creating build/bdist.linux-armv7l/wheel/torchref/refinement 2026-05-28T11:58:22,858 creating build/bdist.linux-armv7l/wheel/torchref/refinement/targets 2026-05-28T11:58:22,860 copying build/lib/torchref/refinement/targets/occupancy_floor_diagnostic.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-28T11:58:22,863 copying build/lib/torchref/refinement/targets/similarity.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-28T11:58:22,866 creating build/bdist.linux-armv7l/wheel/torchref/refinement/targets/xray 2026-05-28T11:58:22,868 copying build/lib/torchref/refinement/targets/xray/least_squares.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-28T11:58:22,870 copying build/lib/torchref/refinement/targets/xray/maximum_likelihood.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-28T11:58:22,872 copying build/lib/torchref/refinement/targets/xray/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-28T11:58:22,875 copying build/lib/torchref/refinement/targets/xray/base.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-28T11:58:22,877 copying build/lib/torchref/refinement/targets/xray/gaussian.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-28T11:58:22,879 copying build/lib/torchref/refinement/targets/xray/bhattacharyya.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/xray 2026-05-28T11:58:22,881 copying build/lib/torchref/refinement/targets/realspace.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-28T11:58:22,884 copying build/lib/torchref/refinement/targets/difference.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-28T11:58:22,889 creating build/bdist.linux-armv7l/wheel/torchref/refinement/targets/adp 2026-05-28T11:58:22,890 copying build/lib/torchref/refinement/targets/adp/rigid_bond.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-28T11:58:22,892 copying build/lib/torchref/refinement/targets/adp/entropy.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-28T11:58:22,895 copying build/lib/torchref/refinement/targets/adp/similarity.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-28T11:58:22,897 copying build/lib/torchref/refinement/targets/adp/scaler_log_scale.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-28T11:58:22,899 copying build/lib/torchref/refinement/targets/adp/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-28T11:58:22,902 copying build/lib/torchref/refinement/targets/adp/base.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-28T11:58:22,904 copying build/lib/torchref/refinement/targets/adp/scaler_u.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-28T11:58:22,907 copying build/lib/torchref/refinement/targets/adp/locality.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/adp 2026-05-28T11:58:22,910 copying build/lib/torchref/refinement/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-28T11:58:22,912 copying build/lib/torchref/refinement/targets/combined.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-28T11:58:22,915 copying build/lib/torchref/refinement/targets/base.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-28T11:58:22,918 copying build/lib/torchref/refinement/targets/amber_target.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-28T11:58:22,922 creating build/bdist.linux-armv7l/wheel/torchref/refinement/targets/geometry 2026-05-28T11:58:22,923 copying build/lib/torchref/refinement/targets/geometry/ramachandran.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-28T11:58:22,926 copying build/lib/torchref/refinement/targets/geometry/non_bonded.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-28T11:58:22,929 copying build/lib/torchref/refinement/targets/geometry/planarity.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-28T11:58:22,931 copying build/lib/torchref/refinement/targets/geometry/non_bonded_h.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-28T11:58:22,934 copying build/lib/torchref/refinement/targets/geometry/bonds.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-28T11:58:22,937 copying build/lib/torchref/refinement/targets/geometry/torsions.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-28T11:58:22,940 copying build/lib/torchref/refinement/targets/geometry/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-28T11:58:22,942 copying build/lib/torchref/refinement/targets/geometry/angles.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-28T11:58:22,945 copying build/lib/torchref/refinement/targets/geometry/chiral.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-28T11:58:22,947 copying build/lib/torchref/refinement/targets/geometry/base.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets/geometry 2026-05-28T11:58:22,949 copying build/lib/torchref/refinement/targets/sampled_ml_phase_target.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-28T11:58:22,952 copying build/lib/torchref/refinement/targets/forcefield_target.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets 2026-05-28T11:58:22,955 creating build/bdist.linux-armv7l/wheel/torchref/refinement/optimizers 2026-05-28T11:58:22,956 copying build/lib/torchref/refinement/optimizers/internal_coord_sa.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-28T11:58:22,959 copying build/lib/torchref/refinement/optimizers/simulated_annealing.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-28T11:58:22,961 copying build/lib/torchref/refinement/optimizers/langevin_sa.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-28T11:58:22,964 copying build/lib/torchref/refinement/optimizers/exploratory_lbfgs.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-28T11:58:22,967 copying build/lib/torchref/refinement/optimizers/adam_noise.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-28T11:58:22,969 copying build/lib/torchref/refinement/optimizers/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-28T11:58:22,971 copying build/lib/torchref/refinement/optimizers/momentum_sa.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/optimizers 2026-05-28T11:58:22,973 copying build/lib/torchref/refinement/loss_state.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement 2026-05-28T11:58:22,976 copying build/lib/torchref/refinement/base_refinement.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement 2026-05-28T11:58:22,981 creating build/bdist.linux-armv7l/wheel/torchref/refinement/weighting 2026-05-28T11:58:22,983 copying build/lib/torchref/refinement/weighting/random_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-28T11:58:22,987 copying build/lib/torchref/refinement/weighting/es_policy_training.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-28T11:58:22,990 copying build/lib/torchref/refinement/weighting/policy_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-28T11:58:22,994 copying build/lib/torchref/refinement/weighting/component_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-28T11:58:22,997 copying build/lib/torchref/refinement/weighting/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-28T11:58:23,000 copying build/lib/torchref/refinement/weighting/base_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting 2026-05-28T11:58:23,003 copying build/lib/torchref/refinement/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement 2026-05-28T11:58:23,006 copying build/lib/torchref/refinement/logger.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement 2026-05-28T11:58:23,009 copying build/lib/torchref/refinement/lbfgs_refinement.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement 2026-05-28T11:58:23,013 copying build/lib/torchref/config.py -> build/bdist.linux-armv7l/wheel/./torchref 2026-05-28T11:58:23,017 creating build/bdist.linux-armv7l/wheel/torchref/symmetry 2026-05-28T11:58:23,018 copying build/lib/torchref/symmetry/map_symmetry_interpolation.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-28T11:58:23,021 copying build/lib/torchref/symmetry/symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-28T11:58:23,023 copying build/lib/torchref/symmetry/reciprocal_symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-28T11:58:23,027 copying build/lib/torchref/symmetry/grid_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-28T11:58:23,030 copying build/lib/torchref/symmetry/map_symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-28T11:58:23,033 copying build/lib/torchref/symmetry/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-28T11:58:23,035 copying build/lib/torchref/symmetry/spacegroup.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-28T11:58:23,039 copying build/lib/torchref/symmetry/cell.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry 2026-05-28T11:58:23,043 creating build/bdist.linux-armv7l/wheel/torchref/utils 2026-05-28T11:58:23,045 copying build/lib/torchref/utils/utils.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,049 copying build/lib/torchref/utils/hyperparameters.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,052 copying build/lib/torchref/utils/serialization.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,055 copying build/lib/torchref/utils/debug_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,058 copying build/lib/torchref/utils/caching.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,061 copying build/lib/torchref/utils/autograd_ops.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,064 copying build/lib/torchref/utils/stats.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,067 copying build/lib/torchref/utils/gradnorm.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,070 copying build/lib/torchref/utils/device_resolution.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,073 copying build/lib/torchref/utils/loss_validation.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,076 copying build/lib/torchref/utils/timing.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,078 copying build/lib/torchref/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,080 copying build/lib/torchref/utils/device_mixin.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,083 copying build/lib/torchref/utils/pse.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,085 copying build/lib/torchref/utils/autograd_introspection.py -> build/bdist.linux-armv7l/wheel/./torchref/utils 2026-05-28T11:58:23,088 creating build/bdist.linux-armv7l/wheel/torchref/scripts 2026-05-28T11:58:23,089 copying build/lib/torchref/scripts/generate_scattering_table.py -> build/bdist.linux-armv7l/wheel/./torchref/scripts 2026-05-28T11:58:23,092 copying build/lib/torchref/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/scripts 2026-05-28T11:58:23,095 creating build/bdist.linux-armv7l/wheel/torchref/model 2026-05-28T11:58:23,097 copying build/lib/torchref/model/parameter_wrappers.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,101 copying build/lib/torchref/model/model_ft.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,104 copying build/lib/torchref/model/model.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,109 copying build/lib/torchref/model/mixed_model.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,112 copying build/lib/torchref/model/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,114 copying build/lib/torchref/model/sf_ds.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,118 copying build/lib/torchref/model/sf_fft.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,121 copying build/lib/torchref/model/model_collection.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,123 copying build/lib/torchref/model/segmented_internal_coordinates.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,127 copying build/lib/torchref/model/internal_coordinates.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,130 copying build/lib/torchref/model/closed_segmented_internal_coordinates.py -> build/bdist.linux-armv7l/wheel/./torchref/model 2026-05-28T11:58:23,135 creating build/bdist.linux-armv7l/wheel/torchref/alignment 2026-05-28T11:58:23,136 copying build/lib/torchref/alignment/sampling.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-28T11:58:23,139 copying build/lib/torchref/alignment/transform.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-28T11:58:23,142 copying build/lib/torchref/alignment/jax_subpixel_peaks.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-28T11:58:23,144 copying build/lib/torchref/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-28T11:58:23,147 copying build/lib/torchref/alignment/ball_transform.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-28T11:58:23,150 copying build/lib/torchref/alignment/rigid_body.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-28T11:58:23,153 copying build/lib/torchref/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-28T11:58:23,155 copying build/lib/torchref/alignment/distributions.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-28T11:58:23,158 copying build/lib/torchref/alignment/clashscore.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-28T11:58:23,161 copying build/lib/torchref/alignment/translation.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment 2026-05-28T11:58:23,164 creating build/bdist.linux-armv7l/wheel/torchref/restraints 2026-05-28T11:58:23,165 copying build/lib/torchref/restraints/library.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-28T11:58:23,168 copying build/lib/torchref/restraints/builders_numba.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-28T11:58:23,171 copying build/lib/torchref/restraints/ramachandran.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-28T11:58:23,174 copying build/lib/torchref/restraints/builders_fast.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-28T11:58:23,178 copying build/lib/torchref/restraints/restraints.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-28T11:58:23,183 copying build/lib/torchref/restraints/neighbor_search.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-28T11:58:23,187 copying build/lib/torchref/restraints/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-28T11:58:23,189 copying build/lib/torchref/restraints/hydrogen_topology.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-28T11:58:23,192 copying build/lib/torchref/restraints/restraints_helper.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-28T11:58:23,196 copying build/lib/torchref/restraints/builders.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints 2026-05-28T11:58:23,200 creating build/bdist.linux-armv7l/wheel/torchref/maps 2026-05-28T11:58:23,201 copying build/lib/torchref/maps/map.py -> build/bdist.linux-armv7l/wheel/./torchref/maps 2026-05-28T11:58:23,204 copying build/lib/torchref/maps/difference_map.py -> build/bdist.linux-armv7l/wheel/./torchref/maps 2026-05-28T11:58:23,207 copying build/lib/torchref/maps/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/maps 2026-05-28T11:58:23,210 creating build/bdist.linux-armv7l/wheel/torchref/scaling 2026-05-28T11:58:23,211 copying build/lib/torchref/scaling/collection_scaler.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling 2026-05-28T11:58:23,214 copying build/lib/torchref/scaling/scaler_base.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling 2026-05-28T11:58:23,217 copying build/lib/torchref/scaling/scaler.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling 2026-05-28T11:58:23,220 copying build/lib/torchref/scaling/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling 2026-05-28T11:58:23,222 copying build/lib/torchref/scaling/solvent.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling 2026-05-28T11:58:23,226 creating build/bdist.linux-armv7l/wheel/torchref/io 2026-05-28T11:58:23,227 copying build/lib/torchref/io/pdb.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-28T11:58:23,230 copying build/lib/torchref/io/mtz.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-28T11:58:23,233 copying build/lib/torchref/io/data_router.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-28T11:58:23,236 copying build/lib/torchref/io/ihm_mapping.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-28T11:58:23,238 copying build/lib/torchref/io/ihm.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-28T11:58:23,241 copying build/lib/torchref/io/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-28T11:58:23,244 copying build/lib/torchref/io/cif_readers.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-28T11:58:23,248 copying build/lib/torchref/io/metadata.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-28T11:58:23,251 copying build/lib/torchref/io/cif.py -> build/bdist.linux-armv7l/wheel/./torchref/io 2026-05-28T11:58:23,254 creating build/bdist.linux-armv7l/wheel/torchref/io/datasets 2026-05-28T11:58:23,256 copying build/lib/torchref/io/datasets/reflection_data.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets 2026-05-28T11:58:23,261 copying build/lib/torchref/io/datasets/fcalc_data.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets 2026-05-28T11:58:23,264 copying build/lib/torchref/io/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets 2026-05-28T11:58:23,266 copying build/lib/torchref/io/datasets/base.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets 2026-05-28T11:58:23,269 copying build/lib/torchref/io/datasets/collection.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets 2026-05-28T11:58:23,271 copying build/lib/torchref/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref 2026-05-28T11:58:23,274 creating build/bdist.linux-armv7l/wheel/torchref/data 2026-05-28T11:58:23,276 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library 2026-05-28T11:58:23,278 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/l 2026-05-28T11:58:23,280 copying build/lib/torchref/data/monomer_library/l/LYS.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/l 2026-05-28T11:58:23,282 copying build/lib/torchref/data/monomer_library/l/LEU.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/l 2026-05-28T11:58:23,285 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/m 2026-05-28T11:58:23,286 copying build/lib/torchref/data/monomer_library/m/MET.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/m 2026-05-28T11:58:23,289 copying build/lib/torchref/data/monomer_library/m/MSE.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/m 2026-05-28T11:58:23,293 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/t 2026-05-28T11:58:23,294 copying build/lib/torchref/data/monomer_library/t/TPO.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/t 2026-05-28T11:58:23,297 copying build/lib/torchref/data/monomer_library/t/THR.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/t 2026-05-28T11:58:23,299 copying build/lib/torchref/data/monomer_library/t/TRP.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/t 2026-05-28T11:58:23,302 copying build/lib/torchref/data/monomer_library/t/TYR.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/t 2026-05-28T11:58:23,305 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/v 2026-05-28T11:58:23,306 copying build/lib/torchref/data/monomer_library/v/VAL.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/v 2026-05-28T11:58:23,309 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/g 2026-05-28T11:58:23,311 copying build/lib/torchref/data/monomer_library/g/GLN.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/g 2026-05-28T11:58:23,314 copying build/lib/torchref/data/monomer_library/g/GLU.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/g 2026-05-28T11:58:23,317 copying build/lib/torchref/data/monomer_library/g/GLY.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/g 2026-05-28T11:58:23,319 copying build/lib/torchref/data/monomer_library/g/G.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/g 2026-05-28T11:58:23,322 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/u 2026-05-28T11:58:23,324 copying build/lib/torchref/data/monomer_library/u/U.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/u 2026-05-28T11:58:23,327 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/list 2026-05-28T11:58:23,328 copying build/lib/torchref/data/monomer_library/list/mon_lib_list.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/list 2026-05-28T11:58:23,387 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/d 2026-05-28T11:58:23,389 copying build/lib/torchref/data/monomer_library/d/DT.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/d 2026-05-28T11:58:23,392 copying build/lib/torchref/data/monomer_library/d/DG.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/d 2026-05-28T11:58:23,395 copying build/lib/torchref/data/monomer_library/d/DC.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/d 2026-05-28T11:58:23,398 copying build/lib/torchref/data/monomer_library/d/DA.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/d 2026-05-28T11:58:23,402 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/s 2026-05-28T11:58:23,403 copying build/lib/torchref/data/monomer_library/s/SEP.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/s 2026-05-28T11:58:23,406 copying build/lib/torchref/data/monomer_library/s/SER.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/s 2026-05-28T11:58:23,410 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/p 2026-05-28T11:58:23,411 copying build/lib/torchref/data/monomer_library/p/PHE.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/p 2026-05-28T11:58:23,414 copying build/lib/torchref/data/monomer_library/p/PRO.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/p 2026-05-28T11:58:23,418 copying build/lib/torchref/data/monomer_library/p/PTR.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/p 2026-05-28T11:58:23,421 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/h 2026-05-28T11:58:23,423 copying build/lib/torchref/data/monomer_library/h/HYP.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/h 2026-05-28T11:58:23,427 copying build/lib/torchref/data/monomer_library/h/HOH.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/h 2026-05-28T11:58:23,430 copying build/lib/torchref/data/monomer_library/h/HIS.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/h 2026-05-28T11:58:23,433 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/i 2026-05-28T11:58:23,435 copying build/lib/torchref/data/monomer_library/i/ILE.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/i 2026-05-28T11:58:23,439 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/a 2026-05-28T11:58:23,440 copying build/lib/torchref/data/monomer_library/a/ARG.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/a 2026-05-28T11:58:23,444 copying build/lib/torchref/data/monomer_library/a/ASN.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/a 2026-05-28T11:58:23,447 copying build/lib/torchref/data/monomer_library/a/ALA.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/a 2026-05-28T11:58:23,450 copying build/lib/torchref/data/monomer_library/a/A.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/a 2026-05-28T11:58:23,453 copying build/lib/torchref/data/monomer_library/a/ASP.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/a 2026-05-28T11:58:23,457 creating build/bdist.linux-armv7l/wheel/torchref/data/monomer_library/c 2026-05-28T11:58:23,459 copying build/lib/torchref/data/monomer_library/c/CYS.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/c 2026-05-28T11:58:23,462 copying build/lib/torchref/data/monomer_library/c/C.cif -> build/bdist.linux-armv7l/wheel/./torchref/data/monomer_library/c 2026-05-28T11:58:23,466 copying build/lib/torchref/data/itc92_scattering_factors.pt -> build/bdist.linux-armv7l/wheel/./torchref/data 2026-05-28T11:58:23,469 copying build/lib/torchref/data/atomic_vdw_radii.csv -> build/bdist.linux-armv7l/wheel/./torchref/data 2026-05-28T11:58:23,472 copying build/lib/torchref/data/rama_nll_surfaces.pt -> build/bdist.linux-armv7l/wheel/./torchref/data 2026-05-28T11:58:23,532 creating build/bdist.linux-armv7l/wheel/torchref/base 2026-05-28T11:58:23,534 creating build/bdist.linux-armv7l/wheel/torchref/base/metrics 2026-05-28T11:58:23,535 copying build/lib/torchref/base/metrics/loss.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics 2026-05-28T11:58:23,538 copying build/lib/torchref/base/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics 2026-05-28T11:58:23,540 copying build/lib/torchref/base/metrics/rfactor.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics 2026-05-28T11:58:23,544 creating build/bdist.linux-armv7l/wheel/torchref/base/fourier 2026-05-28T11:58:23,545 copying build/lib/torchref/base/fourier/grid.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier 2026-05-28T11:58:23,548 copying build/lib/torchref/base/fourier/fft.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier 2026-05-28T11:58:23,550 copying build/lib/torchref/base/fourier/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier 2026-05-28T11:58:23,553 creating build/bdist.linux-armv7l/wheel/torchref/base/targets 2026-05-28T11:58:23,554 copying build/lib/torchref/base/targets/xray_gaussian.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,556 copying build/lib/torchref/base/targets/angle.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,559 copying build/lib/torchref/base/targets/ramachandran.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,561 copying build/lib/torchref/base/targets/bond.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,563 copying build/lib/torchref/base/targets/xray_ls.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,565 copying build/lib/torchref/base/targets/_common.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,568 copying build/lib/torchref/base/targets/xray_bhattacharyya.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,570 copying build/lib/torchref/base/targets/planarity.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,572 copying build/lib/torchref/base/targets/nonbonded.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,575 copying build/lib/torchref/base/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,577 copying build/lib/torchref/base/targets/adp.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,579 copying build/lib/torchref/base/targets/chiral.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,581 copying build/lib/torchref/base/targets/torsion.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,583 copying build/lib/torchref/base/targets/_dispatch.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,586 copying build/lib/torchref/base/targets/xray_ml.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets 2026-05-28T11:58:23,589 creating build/bdist.linux-armv7l/wheel/torchref/base/targets/triton 2026-05-28T11:58:23,590 copying build/lib/torchref/base/targets/triton/xray_gaussian.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,592 copying build/lib/torchref/base/targets/triton/angle.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,594 copying build/lib/torchref/base/targets/triton/ramachandran.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,597 copying build/lib/torchref/base/targets/triton/bond.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,600 copying build/lib/torchref/base/targets/triton/xray_ls.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,602 copying build/lib/torchref/base/targets/triton/place_hydrogens.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,606 copying build/lib/torchref/base/targets/triton/xray_bhattacharyya.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,608 copying build/lib/torchref/base/targets/triton/planarity.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,611 copying build/lib/torchref/base/targets/triton/nonbonded.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,614 copying build/lib/torchref/base/targets/triton/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,616 copying build/lib/torchref/base/targets/triton/adp_simu.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,618 copying build/lib/torchref/base/targets/triton/chiral.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,622 copying build/lib/torchref/base/targets/triton/torsion.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,625 copying build/lib/torchref/base/targets/triton/xray_ml.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,628 copying build/lib/torchref/base/targets/triton/_dihedral.py -> build/bdist.linux-armv7l/wheel/./torchref/base/targets/triton 2026-05-28T11:58:23,630 creating build/bdist.linux-armv7l/wheel/torchref/base/electron_density 2026-05-28T11:58:23,632 copying build/lib/torchref/base/electron_density/voxel_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density 2026-05-28T11:58:23,635 copying build/lib/torchref/base/electron_density/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density 2026-05-28T11:58:23,637 copying build/lib/torchref/base/electron_density/map_building.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density 2026-05-28T11:58:23,640 copying build/lib/torchref/base/electron_density/main.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density 2026-05-28T11:58:23,643 copying build/lib/torchref/base/electron_density/solvent_mask.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density 2026-05-28T11:58:23,647 copying build/lib/torchref/base/CCTBX_related.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-28T11:58:23,651 creating build/bdist.linux-armv7l/wheel/torchref/base/alignment 2026-05-28T11:58:23,653 copying build/lib/torchref/base/alignment/superposition.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment 2026-05-28T11:58:23,655 copying build/lib/torchref/base/alignment/rotation.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment 2026-05-28T11:58:23,658 copying build/lib/torchref/base/alignment/normalization.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment 2026-05-28T11:58:23,661 copying build/lib/torchref/base/alignment/scoring.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment 2026-05-28T11:58:23,663 copying build/lib/torchref/base/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment 2026-05-28T11:58:23,666 creating build/bdist.linux-armv7l/wheel/torchref/base/coordinates 2026-05-28T11:58:23,667 copying build/lib/torchref/base/coordinates/periodic_boundary.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates 2026-05-28T11:58:23,670 copying build/lib/torchref/base/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates 2026-05-28T11:58:23,673 copying build/lib/torchref/base/coordinates/transforms_numpy.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates 2026-05-28T11:58:23,675 copying build/lib/torchref/base/coordinates/transforms_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates 2026-05-28T11:58:23,677 creating build/bdist.linux-armv7l/wheel/torchref/base/scattering 2026-05-28T11:58:23,678 copying build/lib/torchref/base/scattering/scattering_table.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering 2026-05-28T11:58:23,682 copying build/lib/torchref/base/scattering/itc92.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering 2026-05-28T11:58:23,684 copying build/lib/torchref/base/scattering/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering 2026-05-28T11:58:23,687 copying build/lib/torchref/base/scattering/anomalous_table.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering 2026-05-28T11:58:23,690 creating build/bdist.linux-armv7l/wheel/torchref/base/direct_summation 2026-05-28T11:58:23,691 copying build/lib/torchref/base/direct_summation/anisotropic.py -> build/bdist.linux-armv7l/wheel/./torchref/base/direct_summation 2026-05-28T11:58:23,694 copying build/lib/torchref/base/direct_summation/corrections.py -> build/bdist.linux-armv7l/wheel/./torchref/base/direct_summation 2026-05-28T11:58:23,696 copying build/lib/torchref/base/direct_summation/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/direct_summation 2026-05-28T11:58:23,698 copying build/lib/torchref/base/direct_summation/isotropic.py -> build/bdist.linux-armv7l/wheel/./torchref/base/direct_summation 2026-05-28T11:58:23,701 copying build/lib/torchref/base/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-28T11:58:23,704 copying build/lib/torchref/base/math_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-28T11:58:23,707 copying build/lib/torchref/base/get_scattering_factor_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-28T11:58:23,710 copying build/lib/torchref/base/french_wilson.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-28T11:58:23,715 creating build/bdist.linux-armv7l/wheel/torchref/base/chain_closure 2026-05-28T11:58:23,716 copying build/lib/torchref/base/chain_closure/backbone_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/base/chain_closure 2026-05-28T11:58:23,719 copying build/lib/torchref/base/chain_closure/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/chain_closure 2026-05-28T11:58:23,721 copying build/lib/torchref/base/chain_closure/closure.py -> build/bdist.linux-armv7l/wheel/./torchref/base/chain_closure 2026-05-28T11:58:23,724 copying build/lib/torchref/base/math_numpy.py -> build/bdist.linux-armv7l/wheel/./torchref/base 2026-05-28T11:58:23,728 creating build/bdist.linux-armv7l/wheel/torchref/base/kernels 2026-05-28T11:58:23,729 copying build/lib/torchref/base/kernels/optimized_ops.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-28T11:58:23,732 copying build/lib/torchref/base/kernels/triton_kernel.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-28T11:58:23,735 copying build/lib/torchref/base/kernels/separable_triton_kernel.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-28T11:58:23,741 copying build/lib/torchref/base/kernels/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-28T11:58:23,745 copying build/lib/torchref/base/kernels/jit_kernel_vectorized_add_to_map.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-28T11:58:23,748 copying build/lib/torchref/base/kernels/cpu_scatter.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels 2026-05-28T11:58:23,752 creating build/bdist.linux-armv7l/wheel/torchref/base/reciprocal 2026-05-28T11:58:23,753 copying build/lib/torchref/base/reciprocal/symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-28T11:58:23,756 copying build/lib/torchref/base/reciprocal/hkl.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-28T11:58:23,759 copying build/lib/torchref/base/reciprocal/basis.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-28T11:58:23,762 copying build/lib/torchref/base/reciprocal/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-28T11:58:23,765 copying build/lib/torchref/base/reciprocal/grid_operations.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-28T11:58:23,767 copying build/lib/torchref/base/reciprocal/interpolation.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal 2026-05-28T11:58:23,771 creating build/bdist.linux-armv7l/wheel/torchref/cli 2026-05-28T11:58:23,772 copying build/lib/torchref/cli/refine.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-28T11:58:23,775 copying build/lib/torchref/cli/_common.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-28T11:58:23,778 copying build/lib/torchref/cli/mtz2map.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-28T11:58:23,780 copying build/lib/torchref/cli/phased_difference_map.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-28T11:58:23,783 copying build/lib/torchref/cli/add_metadata.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-28T11:58:23,786 copying build/lib/torchref/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-28T11:58:23,789 copying build/lib/torchref/cli/validate_ded.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-28T11:58:23,793 copying build/lib/torchref/cli/strip_altlocs.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-28T11:58:23,795 copying build/lib/torchref/cli/collection_difference_refine.py -> build/bdist.linux-armv7l/wheel/./torchref/cli 2026-05-28T11:58:23,800 copying build/lib/torchref/_bootstrap.py -> build/bdist.linux-armv7l/wheel/./torchref 2026-05-28T11:58:23,803 creating build/bdist.linux-armv7l/wheel/torchref/kinetic 2026-05-28T11:58:23,805 copying build/lib/torchref/kinetic/targets.py -> build/bdist.linux-armv7l/wheel/./torchref/kinetic 2026-05-28T11:58:23,808 copying build/lib/torchref/kinetic/occupancies.py -> build/bdist.linux-armv7l/wheel/./torchref/kinetic 2026-05-28T11:58:23,812 copying build/lib/torchref/kinetic/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/kinetic 2026-05-28T11:58:23,815 copying build/lib/torchref/kinetic/kinetics.py -> build/bdist.linux-armv7l/wheel/./torchref/kinetic 2026-05-28T11:58:23,820 copying build/lib/torchref/kinetic/refinement.py -> build/bdist.linux-armv7l/wheel/./torchref/kinetic 2026-05-28T11:58:23,824 running install_egg_info 2026-05-28T11:58:23,831 Copying torchref.egg-info to build/bdist.linux-armv7l/wheel/./torchref-0.5.3.3-py3.11.egg-info 2026-05-28T11:58:23,849 running install_scripts 2026-05-28T11:58:23,868 creating build/bdist.linux-armv7l/wheel/torchref-0.5.3.3.dist-info/WHEEL 2026-05-28T11:58:23,872 creating '/tmp/pip-wheel-ggr9tnj5/.tmp-g7nedjf1/torchref-0.5.3.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-05-28T11:58:23,876 adding 'torchref/__init__.py' 2026-05-28T11:58:23,879 adding 'torchref/_bootstrap.py' 2026-05-28T11:58:23,882 adding 'torchref/config.py' 2026-05-28T11:58:23,885 adding 'torchref/alignment/__init__.py' 2026-05-28T11:58:23,893 adding 'torchref/alignment/ball_transform.py' 2026-05-28T11:58:23,896 adding 'torchref/alignment/clashscore.py' 2026-05-28T11:58:23,899 adding 'torchref/alignment/distributions.py' 2026-05-28T11:58:23,900 adding 'torchref/alignment/jax_subpixel_peaks.py' 2026-05-28T11:58:23,903 adding 'torchref/alignment/pipeline.py' 2026-05-28T11:58:23,906 adding 'torchref/alignment/rigid_body.py' 2026-05-28T11:58:23,908 adding 'torchref/alignment/sampling.py' 2026-05-28T11:58:23,912 adding 'torchref/alignment/transform.py' 2026-05-28T11:58:23,914 adding 'torchref/alignment/translation.py' 2026-05-28T11:58:23,917 adding 'torchref/base/CCTBX_related.py' 2026-05-28T11:58:23,919 adding 'torchref/base/__init__.py' 2026-05-28T11:58:23,923 adding 'torchref/base/french_wilson.py' 2026-05-28T11:58:23,925 adding 'torchref/base/get_scattering_factor_torch.py' 2026-05-28T11:58:23,929 adding 'torchref/base/math_numpy.py' 2026-05-28T11:58:23,932 adding 'torchref/base/math_torch.py' 2026-05-28T11:58:23,934 adding 'torchref/base/alignment/__init__.py' 2026-05-28T11:58:23,936 adding 'torchref/base/alignment/normalization.py' 2026-05-28T11:58:23,939 adding 'torchref/base/alignment/rotation.py' 2026-05-28T11:58:23,940 adding 'torchref/base/alignment/scoring.py' 2026-05-28T11:58:23,943 adding 'torchref/base/alignment/superposition.py' 2026-05-28T11:58:23,945 adding 'torchref/base/chain_closure/__init__.py' 2026-05-28T11:58:23,947 adding 'torchref/base/chain_closure/backbone_utils.py' 2026-05-28T11:58:23,951 adding 'torchref/base/chain_closure/closure.py' 2026-05-28T11:58:23,954 adding 'torchref/base/coordinates/__init__.py' 2026-05-28T11:58:23,955 adding 'torchref/base/coordinates/periodic_boundary.py' 2026-05-28T11:58:23,957 adding 'torchref/base/coordinates/transforms_numpy.py' 2026-05-28T11:58:23,958 adding 'torchref/base/coordinates/transforms_torch.py' 2026-05-28T11:58:23,961 adding 'torchref/base/direct_summation/__init__.py' 2026-05-28T11:58:23,963 adding 'torchref/base/direct_summation/anisotropic.py' 2026-05-28T11:58:23,965 adding 'torchref/base/direct_summation/corrections.py' 2026-05-28T11:58:23,967 adding 'torchref/base/direct_summation/isotropic.py' 2026-05-28T11:58:23,970 adding 'torchref/base/electron_density/__init__.py' 2026-05-28T11:58:23,974 adding 'torchref/base/electron_density/main.py' 2026-05-28T11:58:23,977 adding 'torchref/base/electron_density/map_building.py' 2026-05-28T11:58:23,979 adding 'torchref/base/electron_density/solvent_mask.py' 2026-05-28T11:58:23,981 adding 'torchref/base/electron_density/voxel_utils.py' 2026-05-28T11:58:23,983 adding 'torchref/base/fourier/__init__.py' 2026-05-28T11:58:23,985 adding 'torchref/base/fourier/fft.py' 2026-05-28T11:58:23,987 adding 'torchref/base/fourier/grid.py' 2026-05-28T11:58:23,990 adding 'torchref/base/kernels/__init__.py' 2026-05-28T11:58:23,992 adding 'torchref/base/kernels/cpu_scatter.py' 2026-05-28T11:58:23,995 adding 'torchref/base/kernels/jit_kernel_vectorized_add_to_map.py' 2026-05-28T11:58:23,998 adding 'torchref/base/kernels/optimized_ops.py' 2026-05-28T11:58:24,003 adding 'torchref/base/kernels/separable_triton_kernel.py' 2026-05-28T11:58:24,007 adding 'torchref/base/kernels/triton_kernel.py' 2026-05-28T11:58:24,009 adding 'torchref/base/metrics/__init__.py' 2026-05-28T11:58:24,011 adding 'torchref/base/metrics/loss.py' 2026-05-28T11:58:24,013 adding 'torchref/base/metrics/rfactor.py' 2026-05-28T11:58:24,015 adding 'torchref/base/reciprocal/__init__.py' 2026-05-28T11:58:24,017 adding 'torchref/base/reciprocal/basis.py' 2026-05-28T11:58:24,019 adding 'torchref/base/reciprocal/grid_operations.py' 2026-05-28T11:58:24,021 adding 'torchref/base/reciprocal/hkl.py' 2026-05-28T11:58:24,024 adding 'torchref/base/reciprocal/interpolation.py' 2026-05-28T11:58:24,026 adding 'torchref/base/reciprocal/symmetry.py' 2026-05-28T11:58:24,029 adding 'torchref/base/scattering/__init__.py' 2026-05-28T11:58:24,030 adding 'torchref/base/scattering/anomalous_table.py' 2026-05-28T11:58:24,033 adding 'torchref/base/scattering/itc92.py' 2026-05-28T11:58:24,035 adding 'torchref/base/scattering/scattering_table.py' 2026-05-28T11:58:24,037 adding 'torchref/base/targets/__init__.py' 2026-05-28T11:58:24,039 adding 'torchref/base/targets/_common.py' 2026-05-28T11:58:24,041 adding 'torchref/base/targets/_dispatch.py' 2026-05-28T11:58:24,043 adding 'torchref/base/targets/adp.py' 2026-05-28T11:58:24,045 adding 'torchref/base/targets/angle.py' 2026-05-28T11:58:24,046 adding 'torchref/base/targets/bond.py' 2026-05-28T11:58:24,048 adding 'torchref/base/targets/chiral.py' 2026-05-28T11:58:24,050 adding 'torchref/base/targets/nonbonded.py' 2026-05-28T11:58:24,052 adding 'torchref/base/targets/planarity.py' 2026-05-28T11:58:24,053 adding 'torchref/base/targets/ramachandran.py' 2026-05-28T11:58:24,055 adding 'torchref/base/targets/torsion.py' 2026-05-28T11:58:24,057 adding 'torchref/base/targets/xray_bhattacharyya.py' 2026-05-28T11:58:24,059 adding 'torchref/base/targets/xray_gaussian.py' 2026-05-28T11:58:24,060 adding 'torchref/base/targets/xray_ls.py' 2026-05-28T11:58:24,062 adding 'torchref/base/targets/xray_ml.py' 2026-05-28T11:58:24,065 adding 'torchref/base/targets/triton/__init__.py' 2026-05-28T11:58:24,067 adding 'torchref/base/targets/triton/_dihedral.py' 2026-05-28T11:58:24,068 adding 'torchref/base/targets/triton/adp_simu.py' 2026-05-28T11:58:24,071 adding 'torchref/base/targets/triton/angle.py' 2026-05-28T11:58:24,073 adding 'torchref/base/targets/triton/bond.py' 2026-05-28T11:58:24,074 adding 'torchref/base/targets/triton/chiral.py' 2026-05-28T11:58:24,077 adding 'torchref/base/targets/triton/nonbonded.py' 2026-05-28T11:58:24,079 adding 'torchref/base/targets/triton/place_hydrogens.py' 2026-05-28T11:58:24,082 adding 'torchref/base/targets/triton/planarity.py' 2026-05-28T11:58:24,083 adding 'torchref/base/targets/triton/ramachandran.py' 2026-05-28T11:58:24,086 adding 'torchref/base/targets/triton/torsion.py' 2026-05-28T11:58:24,088 adding 'torchref/base/targets/triton/xray_bhattacharyya.py' 2026-05-28T11:58:24,089 adding 'torchref/base/targets/triton/xray_gaussian.py' 2026-05-28T11:58:24,091 adding 'torchref/base/targets/triton/xray_ls.py' 2026-05-28T11:58:24,093 adding 'torchref/base/targets/triton/xray_ml.py' 2026-05-28T11:58:24,095 adding 'torchref/cli/__init__.py' 2026-05-28T11:58:24,098 adding 'torchref/cli/_common.py' 2026-05-28T11:58:24,100 adding 'torchref/cli/add_metadata.py' 2026-05-28T11:58:24,105 adding 'torchref/cli/collection_difference_refine.py' 2026-05-28T11:58:24,107 adding 'torchref/cli/mtz2map.py' 2026-05-28T11:58:24,109 adding 'torchref/cli/phased_difference_map.py' 2026-05-28T11:58:24,111 adding 'torchref/cli/refine.py' 2026-05-28T11:58:24,112 adding 'torchref/cli/strip_altlocs.py' 2026-05-28T11:58:24,116 adding 'torchref/cli/validate_ded.py' 2026-05-28T11:58:24,118 adding 'torchref/data/atomic_vdw_radii.csv' 2026-05-28T11:58:24,121 adding 'torchref/data/itc92_scattering_factors.pt' 2026-05-28T11:58:24,355 adding 'torchref/data/rama_nll_surfaces.pt' 2026-05-28T11:58:24,378 adding 'torchref/data/monomer_library/a/A.cif' 2026-05-28T11:58:24,381 adding 'torchref/data/monomer_library/a/ALA.cif' 2026-05-28T11:58:24,383 adding 'torchref/data/monomer_library/a/ARG.cif' 2026-05-28T11:58:24,384 adding 'torchref/data/monomer_library/a/ASN.cif' 2026-05-28T11:58:24,386 adding 'torchref/data/monomer_library/a/ASP.cif' 2026-05-28T11:58:24,389 adding 'torchref/data/monomer_library/c/C.cif' 2026-05-28T11:58:24,390 adding 'torchref/data/monomer_library/c/CYS.cif' 2026-05-28T11:58:24,393 adding 'torchref/data/monomer_library/d/DA.cif' 2026-05-28T11:58:24,396 adding 'torchref/data/monomer_library/d/DC.cif' 2026-05-28T11:58:24,398 adding 'torchref/data/monomer_library/d/DG.cif' 2026-05-28T11:58:24,400 adding 'torchref/data/monomer_library/d/DT.cif' 2026-05-28T11:58:24,403 adding 'torchref/data/monomer_library/g/G.cif' 2026-05-28T11:58:24,405 adding 'torchref/data/monomer_library/g/GLN.cif' 2026-05-28T11:58:24,406 adding 'torchref/data/monomer_library/g/GLU.cif' 2026-05-28T11:58:24,408 adding 'torchref/data/monomer_library/g/GLY.cif' 2026-05-28T11:58:24,410 adding 'torchref/data/monomer_library/h/HIS.cif' 2026-05-28T11:58:24,412 adding 'torchref/data/monomer_library/h/HOH.cif' 2026-05-28T11:58:24,413 adding 'torchref/data/monomer_library/h/HYP.cif' 2026-05-28T11:58:24,416 adding 'torchref/data/monomer_library/i/ILE.cif' 2026-05-28T11:58:24,418 adding 'torchref/data/monomer_library/l/LEU.cif' 2026-05-28T11:58:24,420 adding 'torchref/data/monomer_library/l/LYS.cif' 2026-05-28T11:58:24,962 adding 'torchref/data/monomer_library/list/mon_lib_list.cif' 2026-05-28T11:58:24,989 adding 'torchref/data/monomer_library/m/MET.cif' 2026-05-28T11:58:24,991 adding 'torchref/data/monomer_library/m/MSE.cif' 2026-05-28T11:58:24,994 adding 'torchref/data/monomer_library/p/PHE.cif' 2026-05-28T11:58:24,995 adding 'torchref/data/monomer_library/p/PRO.cif' 2026-05-28T11:58:24,997 adding 'torchref/data/monomer_library/p/PTR.cif' 2026-05-28T11:58:24,999 adding 'torchref/data/monomer_library/s/SEP.cif' 2026-05-28T11:58:25,001 adding 'torchref/data/monomer_library/s/SER.cif' 2026-05-28T11:58:25,003 adding 'torchref/data/monomer_library/t/THR.cif' 2026-05-28T11:58:25,005 adding 'torchref/data/monomer_library/t/TPO.cif' 2026-05-28T11:58:25,007 adding 'torchref/data/monomer_library/t/TRP.cif' 2026-05-28T11:58:25,009 adding 'torchref/data/monomer_library/t/TYR.cif' 2026-05-28T11:58:25,012 adding 'torchref/data/monomer_library/u/U.cif' 2026-05-28T11:58:25,014 adding 'torchref/data/monomer_library/v/VAL.cif' 2026-05-28T11:58:25,016 adding 'torchref/io/__init__.py' 2026-05-28T11:58:25,019 adding 'torchref/io/cif.py' 2026-05-28T11:58:25,027 adding 'torchref/io/cif_readers.py' 2026-05-28T11:58:25,029 adding 'torchref/io/data_router.py' 2026-05-28T11:58:25,034 adding 'torchref/io/ihm.py' 2026-05-28T11:58:25,036 adding 'torchref/io/ihm_mapping.py' 2026-05-28T11:58:25,039 adding 'torchref/io/metadata.py' 2026-05-28T11:58:25,041 adding 'torchref/io/mtz.py' 2026-05-28T11:58:25,044 adding 'torchref/io/pdb.py' 2026-05-28T11:58:25,046 adding 'torchref/io/datasets/__init__.py' 2026-05-28T11:58:25,048 adding 'torchref/io/datasets/base.py' 2026-05-28T11:58:25,050 adding 'torchref/io/datasets/collection.py' 2026-05-28T11:58:25,052 adding 'torchref/io/datasets/fcalc_data.py' 2026-05-28T11:58:25,065 adding 'torchref/io/datasets/reflection_data.py' 2026-05-28T11:58:25,068 adding 'torchref/kinetic/__init__.py' 2026-05-28T11:58:25,073 adding 'torchref/kinetic/kinetics.py' 2026-05-28T11:58:25,077 adding 'torchref/kinetic/occupancies.py' 2026-05-28T11:58:25,080 adding 'torchref/kinetic/refinement.py' 2026-05-28T11:58:25,083 adding 'torchref/kinetic/targets.py' 2026-05-28T11:58:25,085 adding 'torchref/maps/__init__.py' 2026-05-28T11:58:25,087 adding 'torchref/maps/difference_map.py' 2026-05-28T11:58:25,088 adding 'torchref/maps/map.py' 2026-05-28T11:58:25,091 adding 'torchref/model/__init__.py' 2026-05-28T11:58:25,099 adding 'torchref/model/closed_segmented_internal_coordinates.py' 2026-05-28T11:58:25,108 adding 'torchref/model/internal_coordinates.py' 2026-05-28T11:58:25,111 adding 'torchref/model/mixed_model.py' 2026-05-28T11:58:25,126 adding 'torchref/model/model.py' 2026-05-28T11:58:25,129 adding 'torchref/model/model_collection.py' 2026-05-28T11:58:25,134 adding 'torchref/model/model_ft.py' 2026-05-28T11:58:25,144 adding 'torchref/model/parameter_wrappers.py' 2026-05-28T11:58:25,152 adding 'torchref/model/segmented_internal_coordinates.py' 2026-05-28T11:58:25,155 adding 'torchref/model/sf_ds.py' 2026-05-28T11:58:25,158 adding 'torchref/model/sf_fft.py' 2026-05-28T11:58:25,160 adding 'torchref/refinement/__init__.py' 2026-05-28T11:58:25,165 adding 'torchref/refinement/base_refinement.py' 2026-05-28T11:58:25,168 adding 'torchref/refinement/lbfgs_refinement.py' 2026-05-28T11:58:25,170 adding 'torchref/refinement/logger.py' 2026-05-28T11:58:25,175 adding 'torchref/refinement/loss_state.py' 2026-05-28T11:58:25,177 adding 'torchref/refinement/optimizers/__init__.py' 2026-05-28T11:58:25,179 adding 'torchref/refinement/optimizers/adam_noise.py' 2026-05-28T11:58:25,182 adding 'torchref/refinement/optimizers/exploratory_lbfgs.py' 2026-05-28T11:58:25,186 adding 'torchref/refinement/optimizers/internal_coord_sa.py' 2026-05-28T11:58:25,188 adding 'torchref/refinement/optimizers/langevin_sa.py' 2026-05-28T11:58:25,190 adding 'torchref/refinement/optimizers/momentum_sa.py' 2026-05-28T11:58:25,192 adding 'torchref/refinement/optimizers/simulated_annealing.py' 2026-05-28T11:58:25,194 adding 'torchref/refinement/targets/__init__.py' 2026-05-28T11:58:25,200 adding 'torchref/refinement/targets/amber_target.py' 2026-05-28T11:58:25,203 adding 'torchref/refinement/targets/base.py' 2026-05-28T11:58:25,205 adding 'torchref/refinement/targets/combined.py' 2026-05-28T11:58:25,210 adding 'torchref/refinement/targets/difference.py' 2026-05-28T11:58:25,213 adding 'torchref/refinement/targets/forcefield_target.py' 2026-05-28T11:58:25,215 adding 'torchref/refinement/targets/occupancy_floor_diagnostic.py' 2026-05-28T11:58:25,219 adding 'torchref/refinement/targets/realspace.py' 2026-05-28T11:58:25,222 adding 'torchref/refinement/targets/sampled_ml_phase_target.py' 2026-05-28T11:58:25,224 adding 'torchref/refinement/targets/similarity.py' 2026-05-28T11:58:25,226 adding 'torchref/refinement/targets/adp/__init__.py' 2026-05-28T11:58:25,228 adding 'torchref/refinement/targets/adp/base.py' 2026-05-28T11:58:25,229 adding 'torchref/refinement/targets/adp/entropy.py' 2026-05-28T11:58:25,231 adding 'torchref/refinement/targets/adp/locality.py' 2026-05-28T11:58:25,233 adding 'torchref/refinement/targets/adp/rigid_bond.py' 2026-05-28T11:58:25,235 adding 'torchref/refinement/targets/adp/scaler_log_scale.py' 2026-05-28T11:58:25,236 adding 'torchref/refinement/targets/adp/scaler_u.py' 2026-05-28T11:58:25,238 adding 'torchref/refinement/targets/adp/similarity.py' 2026-05-28T11:58:25,240 adding 'torchref/refinement/targets/geometry/__init__.py' 2026-05-28T11:58:25,241 adding 'torchref/refinement/targets/geometry/angles.py' 2026-05-28T11:58:25,242 adding 'torchref/refinement/targets/geometry/base.py' 2026-05-28T11:58:25,244 adding 'torchref/refinement/targets/geometry/bonds.py' 2026-05-28T11:58:25,246 adding 'torchref/refinement/targets/geometry/chiral.py' 2026-05-28T11:58:25,248 adding 'torchref/refinement/targets/geometry/non_bonded.py' 2026-05-28T11:58:25,250 adding 'torchref/refinement/targets/geometry/non_bonded_h.py' 2026-05-28T11:58:25,252 adding 'torchref/refinement/targets/geometry/planarity.py' 2026-05-28T11:58:25,253 adding 'torchref/refinement/targets/geometry/ramachandran.py' 2026-05-28T11:58:25,255 adding 'torchref/refinement/targets/geometry/torsions.py' 2026-05-28T11:58:25,257 adding 'torchref/refinement/targets/xray/__init__.py' 2026-05-28T11:58:25,259 adding 'torchref/refinement/targets/xray/base.py' 2026-05-28T11:58:25,261 adding 'torchref/refinement/targets/xray/bhattacharyya.py' 2026-05-28T11:58:25,263 adding 'torchref/refinement/targets/xray/gaussian.py' 2026-05-28T11:58:25,264 adding 'torchref/refinement/targets/xray/least_squares.py' 2026-05-28T11:58:25,265 adding 'torchref/refinement/targets/xray/maximum_likelihood.py' 2026-05-28T11:58:25,267 adding 'torchref/refinement/weighting/__init__.py' 2026-05-28T11:58:25,269 adding 'torchref/refinement/weighting/base_weighting.py' 2026-05-28T11:58:25,271 adding 'torchref/refinement/weighting/component_weighting.py' 2026-05-28T11:58:25,273 adding 'torchref/refinement/weighting/es_policy_training.py' 2026-05-28T11:58:25,277 adding 'torchref/refinement/weighting/policy_weighting.py' 2026-05-28T11:58:25,279 adding 'torchref/refinement/weighting/random_weighting.py' 2026-05-28T11:58:25,282 adding 'torchref/restraints/__init__.py' 2026-05-28T11:58:25,287 adding 'torchref/restraints/builders.py' 2026-05-28T11:58:25,294 adding 'torchref/restraints/builders_fast.py' 2026-05-28T11:58:25,298 adding 'torchref/restraints/builders_numba.py' 2026-05-28T11:58:25,303 adding 'torchref/restraints/hydrogen_topology.py' 2026-05-28T11:58:25,305 adding 'torchref/restraints/library.py' 2026-05-28T11:58:25,310 adding 'torchref/restraints/neighbor_search.py' 2026-05-28T11:58:25,312 adding 'torchref/restraints/ramachandran.py' 2026-05-28T11:58:25,322 adding 'torchref/restraints/restraints.py' 2026-05-28T11:58:25,326 adding 'torchref/restraints/restraints_helper.py' 2026-05-28T11:58:25,328 adding 'torchref/scaling/__init__.py' 2026-05-28T11:58:25,331 adding 'torchref/scaling/collection_scaler.py' 2026-05-28T11:58:25,334 adding 'torchref/scaling/scaler.py' 2026-05-28T11:58:25,339 adding 'torchref/scaling/scaler_base.py' 2026-05-28T11:58:25,342 adding 'torchref/scaling/solvent.py' 2026-05-28T11:58:25,345 adding 'torchref/scripts/__init__.py' 2026-05-28T11:58:25,346 adding 'torchref/scripts/generate_scattering_table.py' 2026-05-28T11:58:25,349 adding 'torchref/symmetry/__init__.py' 2026-05-28T11:58:25,350 adding 'torchref/symmetry/cell.py' 2026-05-28T11:58:25,352 adding 'torchref/symmetry/grid_utils.py' 2026-05-28T11:58:25,354 adding 'torchref/symmetry/map_symmetry.py' 2026-05-28T11:58:25,356 adding 'torchref/symmetry/map_symmetry_interpolation.py' 2026-05-28T11:58:25,362 adding 'torchref/symmetry/reciprocal_symmetry.py' 2026-05-28T11:58:25,366 adding 'torchref/symmetry/spacegroup.py' 2026-05-28T11:58:25,368 adding 'torchref/symmetry/symmetry.py' 2026-05-28T11:58:25,370 adding 'torchref/utils/__init__.py' 2026-05-28T11:58:25,371 adding 'torchref/utils/autograd_introspection.py' 2026-05-28T11:58:25,373 adding 'torchref/utils/autograd_ops.py' 2026-05-28T11:58:25,374 adding 'torchref/utils/caching.py' 2026-05-28T11:58:25,376 adding 'torchref/utils/debug_utils.py' 2026-05-28T11:58:25,379 adding 'torchref/utils/device_mixin.py' 2026-05-28T11:58:25,380 adding 'torchref/utils/device_resolution.py' 2026-05-28T11:58:25,381 adding 'torchref/utils/gradnorm.py' 2026-05-28T11:58:25,383 adding 'torchref/utils/hyperparameters.py' 2026-05-28T11:58:25,386 adding 'torchref/utils/loss_validation.py' 2026-05-28T11:58:25,388 adding 'torchref/utils/pse.py' 2026-05-28T11:58:25,389 adding 'torchref/utils/serialization.py' 2026-05-28T11:58:25,391 adding 'torchref/utils/stats.py' 2026-05-28T11:58:25,392 adding 'torchref/utils/timing.py' 2026-05-28T11:58:25,397 adding 'torchref/utils/utils.py' 2026-05-28T11:58:25,400 adding 'torchref-0.5.3.3.dist-info/licenses/LICENSE' 2026-05-28T11:58:25,402 adding 'torchref-0.5.3.3.dist-info/METADATA' 2026-05-28T11:58:25,403 adding 'torchref-0.5.3.3.dist-info/WHEEL' 2026-05-28T11:58:25,404 adding 'torchref-0.5.3.3.dist-info/entry_points.txt' 2026-05-28T11:58:25,405 adding 'torchref-0.5.3.3.dist-info/top_level.txt' 2026-05-28T11:58:25,409 adding 'torchref-0.5.3.3.dist-info/RECORD' 2026-05-28T11:58:25,444 removing build/bdist.linux-armv7l/wheel 2026-05-28T11:58:25,630 Building wheel for torchref (pyproject.toml): finished with status 'done' 2026-05-28T11:58:25,696 Created wheel for torchref: filename=torchref-0.5.3.3-py3-none-any.whl size=3134951 sha256=d514e91bc2e9cbe6e7c2c76cbc3a9180280bda2f08476cb92801246b944408aa 2026-05-28T11:58:25,697 Stored in directory: /tmp/pip-ephem-wheel-cache-xtejqjlf/wheels/64/e6/9c/fa8b66019d735f8ea178825a9aefe628ef27d15c13e6fc3202 2026-05-28T11:58:25,718 Successfully built torchref 2026-05-28T11:58:25,809 Removed build tracker: '/tmp/pip-build-tracker-6dvowui8'