2026-05-29T13:34:57,855 Created temporary directory: /tmp/pip-ephem-wheel-cache-6m5coo0t 2026-05-29T13:34:57,856 Created temporary directory: /tmp/pip-build-tracker-xrj2kvi5 2026-05-29T13:34:57,857 Initialized build tracking at /tmp/pip-build-tracker-xrj2kvi5 2026-05-29T13:34:57,857 Created build tracker: /tmp/pip-build-tracker-xrj2kvi5 2026-05-29T13:34:57,858 Entered build tracker: /tmp/pip-build-tracker-xrj2kvi5 2026-05-29T13:34:57,859 Created temporary directory: /tmp/pip-wheel-0ojvt9ro 2026-05-29T13:34:57,861 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-29T13:34:57,864 Created temporary directory: /tmp/pip-ephem-wheel-cache-lyl2bqgm 2026-05-29T13:34:57,885 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-29T13:34:57,889 2 location(s) to search for versions of pyxmipp3: 2026-05-29T13:34:57,889 * https://pypi.org/simple/pyxmipp3/ 2026-05-29T13:34:57,889 * https://www.piwheels.org/simple/pyxmipp3/ 2026-05-29T13:34:57,890 Fetching project page and analyzing links: https://pypi.org/simple/pyxmipp3/ 2026-05-29T13:34:57,890 Getting page https://pypi.org/simple/pyxmipp3/ 2026-05-29T13:34:57,892 Found index url https://pypi.org/simple 2026-05-29T13:34:58,121 Fetched page https://pypi.org/simple/pyxmipp3/ as application/vnd.pypi.simple.v1+json 2026-05-29T13:34:58,135 Skipping link: No binaries permitted for pyxmipp3: 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https://files.pythonhosted.org/packages/ce/af/ea088ad558e3a0cb15c810c00d88667cc505d8938dece44890dd2e5545ba/pyxmipp3-0.2.0-cp313-cp313-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,166 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/70/b0/d76fc57f8a1411d9b200527b4bdecd4642ee2e946ded3f22ca79b09d4196/pyxmipp3-0.2.0-cp313-cp313-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,166 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/e9/96/34004f50e47fb3da09f23c5668e9175b4519d9ac1ca69251badc9ff2d2d7/pyxmipp3-0.2.0-cp314-cp314-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,167 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/c0/54/c3834f33a3706142ba22ae6e396f15d0bad969192afd39ad833bea81757a/pyxmipp3-0.2.0-cp314-cp314-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,167 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/dc/16/c7ecfc1b0dec57f00a192adb579097e9f69bc84fe68b87389092d8185fe7/pyxmipp3-0.2.0-cp38-cp38-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,168 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/fe/40/63e0055cd2549997f6b8d97165dba727f57a8744e734b6559183c15c95e0/pyxmipp3-0.2.0-cp38-cp38-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,168 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/66/91/a52c5ec731c29e01f15cbeeea48ac5fd508ce04dd39cbe8241dc950f1054/pyxmipp3-0.2.0-cp39-cp39-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,169 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/d6/2a/b00068a44b07d60b8872c9c67d84e4ede29a205920c6fb4a4b327ac0d5c5/pyxmipp3-0.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,170 Found link https://files.pythonhosted.org/packages/d8/8e/6574905e03a18f667bbf9fd690bc4cfaa559dab5832f8acae295c71783b7/pyxmipp3-0.2.0.tar.gz (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7), version: 0.2.0 2026-05-29T13:34:58,170 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/81/69/6544cad7379e8fec47275c0181bb403caed331ad89d147cad053c86387cc/pyxmipp3-0.3.0-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,171 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/72/88/5dddcb1e58d44b1677244fd74fb410f2d1c92b449c83a0d7cf6b4a9aa6f7/pyxmipp3-0.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,171 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/51/b1/a5cad4acec3b48e771e08a93aad30ed8bfb7ef748e9a1626561997200c1f/pyxmipp3-0.3.0-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,172 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/79/e0/a9f263bb1a2837fd09c3ba66d071d1b56275d3608f9baa9feb76263f4ca7/pyxmipp3-0.3.0-cp313-cp313-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,172 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/e4/c7/97357d9bc208da3e2271aa4ee83210d2e1a663aafa7ea248cb302408b99f/pyxmipp3-0.3.0-cp314-cp314-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,173 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/a1/bc/625163ad5f69f0c0ae27648c0bd7a046bf9a888b8c197c43df13c8dc787a/pyxmipp3-0.3.0-cp38-cp38-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,173 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/dc/2a/0e8df69b5df9c5711e9dd374b7590b1994551188cd768d07372905bab6c5/pyxmipp3-0.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-05-29T13:34:58,174 Found link https://files.pythonhosted.org/packages/bc/4c/a296bee6f7f922474322af2dcb919001e335ef7196f9ce123ff8f38d71ba/pyxmipp3-0.3.0.tar.gz (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7), version: 0.3.0 2026-05-29T13:34:58,175 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyxmipp3/ 2026-05-29T13:34:58,175 Getting page https://www.piwheels.org/simple/pyxmipp3/ 2026-05-29T13:34:58,176 Found index url https://www.piwheels.org/simple 2026-05-29T13:34:58,344 Fetched page https://www.piwheels.org/simple/pyxmipp3/ as text/html 2026-05-29T13:34:58,346 Skipping link: not a file: https://www.piwheels.org/simple/pyxmipp3/ 2026-05-29T13:34:58,346 Skipping link: not a file: https://pypi.org/simple/pyxmipp3/ 2026-05-29T13:34:58,365 Given no hashes to check 1 links for project 'pyxmipp3': discarding no candidates 2026-05-29T13:34:58,383 Collecting pyxmipp3==0.3.0 2026-05-29T13:34:58,386 Created temporary directory: /tmp/pip-unpack-kyqf62nd 2026-05-29T13:34:58,612 Downloading pyxmipp3-0.3.0.tar.gz (66 kB) 2026-05-29T13:34:58,748 Added pyxmipp3==0.3.0 from https://files.pythonhosted.org/packages/bc/4c/a296bee6f7f922474322af2dcb919001e335ef7196f9ce123ff8f38d71ba/pyxmipp3-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-xrj2kvi5' 2026-05-29T13:34:58,759 Created temporary directory: /tmp/pip-build-env-2ndpxokq 2026-05-29T13:34:58,763 Installing build dependencies: started 2026-05-29T13:34:58,765 Running command pip subprocess to install build dependencies 2026-05-29T13:34:59,898 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-05-29T13:35:00,322 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-05-29T13:35:00,347 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-05-29T13:35:00,348 Ignoring numpy: markers 'python_version < "3.9"' don't match your environment 2026-05-29T13:35:00,890 Collecting scikit-build-core==0.11.* 2026-05-29T13:35:00,891 Obtaining dependency information for scikit-build-core==0.11.* from https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.11.6-py3-none-any.whl.metadata 2026-05-29T13:35:00,912 Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.11.6-py3-none-any.whl.metadata (18 kB) 2026-05-29T13:35:00,926 Discarding https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.11.6-py3-none-any.whl#sha256=eeb430b2ffd6104e14b58f3b41dd78cee0bd8d18ac8d4ab70a82c90bedb24c9a (from https://www.piwheels.org/simple/scikit-build-core/) (requires-python:>=3.8): Requested scikit-build-core==0.11.* from https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.11.6-py3-none-any.whl#sha256=eeb430b2ffd6104e14b58f3b41dd78cee0bd8d18ac8d4ab70a82c90bedb24c9a has inconsistent Name: expected 'scikit-build-core', but metadata has 'scikit_build_core' 2026-05-29T13:35:00,958 Using cached scikit_build_core-0.11.6-py3-none-any.whl (185 kB) 2026-05-29T13:35:02,014 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-29T13:35:02,022 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-29T13:35:02,030 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-29T13:35:02,037 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-29T13:35:02,045 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-05-29T13:35:02,834 Collecting numpy>=2.0.0 2026-05-29T13:35:02,835 Obtaining dependency information for numpy>=2.0.0 from https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata 2026-05-29T13:35:02,849 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata (6.6 kB) 2026-05-29T13:35:03,194 Collecting packaging>=23.2 2026-05-29T13:35:03,195 Obtaining dependency information for packaging>=23.2 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-05-29T13:35:03,210 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-05-29T13:35:03,331 Collecting pathspec>=0.10.1 2026-05-29T13:35:03,333 Obtaining dependency information for pathspec>=0.10.1 from https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl.metadata 2026-05-29T13:35:03,347 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl.metadata (14 kB) 2026-05-29T13:35:03,822 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-05-29T13:35:03,941 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-29T13:35:03,959 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl (57 kB) 2026-05-29T13:35:04,404 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-05-29T13:35:04,602 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-05-29T13:35:04,626 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl (57 kB) 2026-05-29T13:35:07,336 Installing collected packages: pathspec, packaging, numpy, scikit-build-core 2026-05-29T13:35:16,871 Creating /tmp/pip-build-env-2ndpxokq/overlay/local/bin 2026-05-29T13:35:16,873 changing mode of /tmp/pip-build-env-2ndpxokq/overlay/local/bin/f2py to 755 2026-05-29T13:35:16,875 changing mode of /tmp/pip-build-env-2ndpxokq/overlay/local/bin/numpy-config to 755 2026-05-29T13:35:17,526 Successfully installed numpy-2.4.6 packaging-26.2 pathspec-1.1.1 scikit-build-core-0.11.6 2026-05-29T13:35:17,883 Installing build dependencies: finished with status 'done' 2026-05-29T13:35:17,889 Getting requirements to build wheel: started 2026-05-29T13:35:17,890 Running command Getting requirements to build wheel 2026-05-29T13:35:18,386 WARNING: Use build.verbose instead of cmake.verbose for scikit-build-core >= 0.10 2026-05-29T13:35:18,490 Getting requirements to build wheel: finished with status 'done' 2026-05-29T13:35:18,493 Created temporary directory: /tmp/pip-modern-metadata-pis3amk4 2026-05-29T13:35:18,496 Preparing metadata (pyproject.toml): started 2026-05-29T13:35:18,497 Running command Preparing metadata (pyproject.toml) 2026-05-29T13:35:19,143 WARNING: Use build.verbose instead of cmake.verbose for scikit-build-core >= 0.10 2026-05-29T13:35:19,195 *** scikit-build-core 0.11.6 using CMake 3.25.1 (metadata_wheel) 2026-05-29T13:35:19,302 Preparing metadata (pyproject.toml): finished with status 'done' 2026-05-29T13:35:19,307 Source in /tmp/pip-wheel-0ojvt9ro/pyxmipp3_d0f242eb90aa4a01b44ac04a0fab8958 has version 0.3.0, which satisfies requirement pyxmipp3==0.3.0 from https://files.pythonhosted.org/packages/bc/4c/a296bee6f7f922474322af2dcb919001e335ef7196f9ce123ff8f38d71ba/pyxmipp3-0.3.0.tar.gz 2026-05-29T13:35:19,308 Removed pyxmipp3==0.3.0 from https://files.pythonhosted.org/packages/bc/4c/a296bee6f7f922474322af2dcb919001e335ef7196f9ce123ff8f38d71ba/pyxmipp3-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-xrj2kvi5' 2026-05-29T13:35:19,313 Created temporary directory: /tmp/pip-unpack-gb9g0xov 2026-05-29T13:35:19,314 Building wheels for collected packages: pyxmipp3 2026-05-29T13:35:19,318 Created temporary directory: /tmp/pip-wheel-o5_eplc8 2026-05-29T13:35:19,318 Destination directory: /tmp/pip-wheel-o5_eplc8 2026-05-29T13:35:19,320 Building wheel for pyxmipp3 (pyproject.toml): started 2026-05-29T13:35:19,322 Running command Building wheel for pyxmipp3 (pyproject.toml) 2026-05-29T13:35:19,950 WARNING: Use build.verbose instead of cmake.verbose for scikit-build-core >= 0.10 2026-05-29T13:35:20,003 *** scikit-build-core 0.11.6 using CMake 3.25.1 (wheel) 2026-05-29T13:35:20,034 *** Configuring CMake... 2026-05-29T13:35:20,403 loading initial cache file /tmp/tmp1covsx7v/build/CMakeInit.txt 2026-05-29T13:35:20,728 -- The C compiler identification is GNU 12.2.0 2026-05-29T13:35:21,294 -- The CXX compiler identification is GNU 12.2.0 2026-05-29T13:35:21,377 -- Detecting C compiler ABI info 2026-05-29T13:35:21,653 -- Detecting C compiler ABI info - done 2026-05-29T13:35:21,690 -- Check for working C compiler: /usr/bin/arm-linux-gnueabihf-gcc - skipped 2026-05-29T13:35:21,691 -- Detecting C compile features 2026-05-29T13:35:21,693 -- Detecting C compile features - done 2026-05-29T13:35:21,715 -- Detecting CXX compiler ABI info 2026-05-29T13:35:22,047 -- Detecting CXX compiler ABI info - done 2026-05-29T13:35:22,087 -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabihf-g++ - skipped 2026-05-29T13:35:22,089 -- Detecting CXX compile features 2026-05-29T13:35:22,093 -- Detecting CXX compile features - done 2026-05-29T13:35:22,145 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2026-05-29T13:35:22,456 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success 2026-05-29T13:35:22,461 -- Found Threads: TRUE 2026-05-29T13:35:23,573 -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development.Module NumPy 2026-05-29T13:35:31,099 -- Building tiff version 4.7.1 2026-05-29T13:35:31,111 -- Performing Test C_FLAG_Wall 2026-05-29T13:35:31,372 -- Performing Test C_FLAG_Wall - Success 2026-05-29T13:35:31,377 -- Performing Test C_FLAG_Winline 2026-05-29T13:35:31,706 -- Performing Test C_FLAG_Winline - Success 2026-05-29T13:35:31,710 -- Performing Test C_FLAG_Wformat_security 2026-05-29T13:35:31,966 -- Performing Test C_FLAG_Wformat_security - Success 2026-05-29T13:35:31,969 -- Performing Test C_FLAG_Wpointer_arith 2026-05-29T13:35:32,224 -- Performing Test C_FLAG_Wpointer_arith - Success 2026-05-29T13:35:32,228 -- Performing Test C_FLAG_Wdisabled_optimization 2026-05-29T13:35:32,512 -- Performing Test C_FLAG_Wdisabled_optimization - Success 2026-05-29T13:35:32,515 -- Performing Test C_FLAG_Wno_unknown_pragmas 2026-05-29T13:35:32,775 -- Performing Test C_FLAG_Wno_unknown_pragmas - Success 2026-05-29T13:35:32,779 -- Performing Test C_FLAG_fstrict_aliasing 2026-05-29T13:35:33,033 -- Performing Test C_FLAG_fstrict_aliasing - Success 2026-05-29T13:35:33,037 -- Performing Test HAVE_LD_VERSION_SCRIPT 2026-05-29T13:35:33,337 -- Performing Test HAVE_LD_VERSION_SCRIPT - Success 2026-05-29T13:35:33,350 -- Looking for assert.h 2026-05-29T13:35:33,618 -- Looking for assert.h - found 2026-05-29T13:35:33,620 -- Looking for fcntl.h 2026-05-29T13:35:33,897 -- Looking for fcntl.h - found 2026-05-29T13:35:33,899 -- Looking for io.h 2026-05-29T13:35:34,056 -- Looking for io.h - not found 2026-05-29T13:35:34,058 -- Looking for strings.h 2026-05-29T13:35:34,351 -- Looking for strings.h - found 2026-05-29T13:35:34,353 -- Looking for sys/time.h 2026-05-29T13:35:34,627 -- Looking for sys/time.h - found 2026-05-29T13:35:34,628 -- Looking for sys/types.h 2026-05-29T13:35:34,944 -- Looking for sys/types.h - found 2026-05-29T13:35:34,946 -- Looking for unistd.h 2026-05-29T13:35:35,231 -- Looking for unistd.h - found 2026-05-29T13:35:35,236 -- Looking for getopt 2026-05-29T13:35:35,527 -- Looking for getopt - found 2026-05-29T13:35:35,529 -- Looking for optarg 2026-05-29T13:35:35,831 -- Looking for optarg - found 2026-05-29T13:35:35,832 -- Looking for mmap 2026-05-29T13:35:36,109 -- Looking for mmap - found 2026-05-29T13:35:36,111 -- Looking for setmode 2026-05-29T13:35:36,276 -- Looking for setmode - not found 2026-05-29T13:35:36,290 -- Looking for stdint.h 2026-05-29T13:35:36,595 -- Looking for stdint.h - found 2026-05-29T13:35:36,596 -- Looking for stddef.h 2026-05-29T13:35:36,862 -- Looking for stddef.h - found 2026-05-29T13:35:36,863 -- Check size of size_t 2026-05-29T13:35:37,156 -- Check size of size_t - done 2026-05-29T13:35:37,223 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2026-05-29T13:35:37,246 -- Found Deflate: /usr/lib/arm-linux-gnueabihf/libdeflate.so (found version "1.14") 2026-05-29T13:35:37,588 -- Found JPEG: /usr/lib/arm-linux-gnueabihf/libjpeg.so (found version "62") 2026-05-29T13:35:37,592 -- Performing Test HAVE_JPEGTURBO_DUAL_MODE_8_12 2026-05-29T13:35:37,891 -- Performing Test HAVE_JPEGTURBO_DUAL_MODE_8_12 - Failed 2026-05-29T13:35:37,910 -- Found JBIG: /usr/lib/arm-linux-gnueabihf/libjbig.so (found version "2.1") 2026-05-29T13:35:37,911 -- Looking for jbg_newlen 2026-05-29T13:35:38,185 -- Looking for jbg_newlen - found 2026-05-29T13:35:38,203 -- Found LERC: /usr/lib/arm-linux-gnueabihf/libLerc.so (found version "4.0.0") 2026-05-29T13:35:38,220 -- Looking for lzma_auto_decoder in /usr/lib/arm-linux-gnueabihf/liblzma.so 2026-05-29T13:35:38,578 -- Looking for lzma_auto_decoder in /usr/lib/arm-linux-gnueabihf/liblzma.so - found 2026-05-29T13:35:38,579 -- Looking for lzma_easy_encoder in /usr/lib/arm-linux-gnueabihf/liblzma.so 2026-05-29T13:35:38,854 -- Looking for lzma_easy_encoder in /usr/lib/arm-linux-gnueabihf/liblzma.so - found 2026-05-29T13:35:38,855 -- Looking for lzma_lzma_preset in /usr/lib/arm-linux-gnueabihf/liblzma.so 2026-05-29T13:35:39,126 -- Looking for lzma_lzma_preset in /usr/lib/arm-linux-gnueabihf/liblzma.so - found 2026-05-29T13:35:39,131 -- Found liblzma: /usr/lib/arm-linux-gnueabihf/liblzma.so (found version "5.4.1") 2026-05-29T13:35:39,164 -- Found ZSTD: /usr/lib/arm-linux-gnueabihf/libzstd.so (found version "1.5.4") 2026-05-29T13:35:39,165 -- Looking for ZSTD_decompressStream 2026-05-29T13:35:39,488 -- Looking for ZSTD_decompressStream - found 2026-05-29T13:35:39,505 -- Found WebP: /usr/lib/arm-linux-gnueabihf/libwebp.so 2026-05-29T13:35:39,543 -- Found OpenGL: /usr/lib/arm-linux-gnueabihf/libOpenGL.so found components: OpenGL 2026-05-29T13:35:39,822 -- Could NOT find GLUT (missing: GLUT_glut_LIBRARY GLUT_INCLUDE_DIR) 2026-05-29T13:35:39,823 -- Looking for GL/gl.h 2026-05-29T13:35:40,278 -- Looking for GL/gl.h - found 2026-05-29T13:35:40,279 -- Looking for GL/glu.h 2026-05-29T13:35:40,688 -- Looking for GL/glu.h - found 2026-05-29T13:35:40,689 -- Looking for GL/glut.h 2026-05-29T13:35:40,849 -- Looking for GL/glut.h - not found 2026-05-29T13:35:40,851 -- Looking for GLUT/glut.h 2026-05-29T13:35:41,008 -- Looking for GLUT/glut.h - not found 2026-05-29T13:35:41,010 -- Looking for OpenGL/gl.h 2026-05-29T13:35:41,154 -- Looking for OpenGL/gl.h - not found 2026-05-29T13:35:41,156 -- Looking for OpenGL/glu.h 2026-05-29T13:35:41,300 -- Looking for OpenGL/glu.h - not found 2026-05-29T13:35:41,307 -- Looking for pow 2026-05-29T13:35:41,619 -- Looking for pow - not found 2026-05-29T13:35:41,625 -- Looking for pow 2026-05-29T13:35:41,972 -- Looking for pow - found 2026-05-29T13:35:41,977 -- Found CMath: TRUE 2026-05-29T13:35:42,052 -- 2026-05-29T13:35:42,052 -- Libtiff is now configured for Linux-6.1.21-v7l+ 2026-05-29T13:35:42,053 -- 2026-05-29T13:35:42,053 -- Libtiff build version: 4.7.1 2026-05-29T13:35:42,054 -- Libtiff library version: 6.2.0 2026-05-29T13:35:42,054 -- Libtiff release date: 20250911 2026-05-29T13:35:42,055 -- 2026-05-29T13:35:42,055 -- Installation directory: /tmp/tmp1covsx7v/wheel/platlib 2026-05-29T13:35:42,055 -- Documentation directory: share/doc/pyxmipp3 2026-05-29T13:35:42,056 -- C compiler: /usr/bin/arm-linux-gnueabihf-gcc 2026-05-29T13:35:42,056 -- C++ compiler: /usr/bin/arm-linux-gnueabihf-g++ 2026-05-29T13:35:42,057 -- Build shared libraries: OFF 2026-05-29T13:35:42,058 -- Build tools: OFF 2026-05-29T13:35:42,058 -- Build tests: ON 2026-05-29T13:35:42,059 -- Build contrib: ON 2026-05-29T13:35:42,059 -- Build docs: OFF 2026-05-29T13:35:42,060 -- Build deprecated features: OFF 2026-05-29T13:35:42,060 -- Enable linker symbol versioning: TRUE 2026-05-29T13:35:42,061 -- Support Microsoft Document Imaging: ON 2026-05-29T13:35:42,061 -- Use win32 IO: OFF 2026-05-29T13:35:42,062 -- 2026-05-29T13:35:42,062 -- Support for internal codecs: 2026-05-29T13:35:42,063 -- CCITT Group 3 & 4 algorithms: ON 2026-05-29T13:35:42,063 -- Macintosh PackBits algorithm: ON 2026-05-29T13:35:42,063 -- LZW algorithm: ON 2026-05-29T13:35:42,064 -- ThunderScan 4-bit RLE algorithm: ON 2026-05-29T13:35:42,064 -- NeXT 2-bit RLE algorithm: ON 2026-05-29T13:35:42,065 -- LogLuv high dynamic range encoding: ON 2026-05-29T13:35:42,065 -- 2026-05-29T13:35:42,066 -- Support for external codecs: 2026-05-29T13:35:42,066 -- ZLIB support: Requested:ON Availability:TRUE Support:TRUE 2026-05-29T13:35:42,067 -- libdeflate support: Requested:ON Availability:TRUE Support:TRUE 2026-05-29T13:35:42,067 -- Pixar log-format algorithm: Requested:ON Availability:TRUE Support:TRUE 2026-05-29T13:35:42,068 -- JPEG support: Requested:ON Availability:TRUE Support:TRUE 2026-05-29T13:35:42,068 -- Old JPEG support: Requested:ON Availability:TRUE Support:TRUE 2026-05-29T13:35:42,069 -- JPEG 8/12 bit dual mode: Requested:OFF Availability:FALSE Support:FALSE 2026-05-29T13:35:42,069 -- ISO JBIG support: Requested:ON Availability:TRUE Support:TRUE 2026-05-29T13:35:42,070 -- LERC support: Requested:ON Availability:TRUE Support:TRUE 2026-05-29T13:35:42,070 -- LZMA2 support: Requested:ON Availability:TRUE Support:TRUE 2026-05-29T13:35:42,071 -- ZSTD support: Requested:ON Availability:TRUE Support:TRUE 2026-05-29T13:35:42,072 -- WEBP support: Requested:ON Availability:TRUE Support:TRUE 2026-05-29T13:35:42,072 -- 2026-05-29T13:35:42,072 -- C++ support: ON (requested) TRUE (availability) 2026-05-29T13:35:42,073 -- 2026-05-29T13:35:42,073 -- OpenGL support: Requested:OFF Availability:FALSE Support:FALSE 2026-05-29T13:35:42,074 -- 2026-05-29T13:35:50,585 -- Configuring done 2026-05-29T13:35:51,199 -- Generating done 2026-05-29T13:35:51,396 -- Build files have been written to: /tmp/tmp1covsx7v/build 2026-05-29T13:35:51,528 *** Building project with Ninja... 2026-05-29T13:35:51,774 [1/304] Creating directories for 'fftw3_float_external' 2026-05-29T13:35:51,808 [2/304] Creating directories for 'hdf5_external' 2026-05-29T13:35:51,826 [3/304] Creating directories for 'fftw3_double_external' 2026-05-29T13:35:51,834 [4/304] Creating directories for 'libjpeg_external' 2026-05-29T13:35:54,502 [5/304] Performing download step (download, verify and extract) for 'libjpeg_external' 2026-05-29T13:35:54,738 [6/304] No update step for 'libjpeg_external' 2026-05-29T13:35:54,965 [7/304] No patch step for 'libjpeg_external' 2026-05-29T13:35:59,433 [8/304] Performing download step (download, verify and extract) for 'fftw3_float_external' 2026-05-29T13:35:59,785 [9/304] No update step for 'fftw3_float_external' 2026-05-29T13:36:00,035 [10/304] No patch step for 'fftw3_float_external' 2026-05-29T13:36:00,302 [11/304] Performing download step (download, verify and extract) for 'fftw3_double_external' 2026-05-29T13:36:00,553 [12/304] No update step for 'fftw3_double_external' 2026-05-29T13:36:00,740 [13/304] No patch step for 'fftw3_double_external' 2026-05-29T13:36:02,697 [14/304] Building CXX object CMakeFiles/libsvm.dir/_deps/libsvm-src/svm.cpp.o 2026-05-29T13:36:03,153 [15/304] Linking CXX static library liblibsvm.a 2026-05-29T13:36:04,386 [16/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_aux.c.o 2026-05-29T13:36:04,814 [17/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_close.c.o 2026-05-29T13:36:05,114 [18/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_codec.c.o 2026-05-29T13:36:06,105 [19/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_color.c.o 2026-05-29T13:36:06,545 [20/304] Performing download step (download, verify and extract) for 'hdf5_external' 2026-05-29T13:36:06,742 [21/304] No update step for 'hdf5_external' 2026-05-29T13:36:06,802 [22/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_compress.c.o 2026-05-29T13:36:06,947 [23/304] No patch step for 'hdf5_external' 2026-05-29T13:36:07,646 [24/304] Performing configure step for 'libjpeg_external' 2026-05-29T13:36:12,585 [25/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_dir.c.o 2026-05-29T13:36:15,270 [26/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_dirinfo.c.o 2026-05-29T13:36:40,591 [27/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_dirread.c.o 2026-05-29T13:36:55,960 [28/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_dirwrite.c.o 2026-05-29T13:36:56,885 [29/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_dumpmode.c.o 2026-05-29T13:36:57,784 [30/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_error.c.o 2026-05-29T13:36:58,394 [31/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_extension.c.o 2026-05-29T13:37:05,577 [32/304] Performing configure step for 'fftw3_float_external' 2026-05-29T13:37:06,578 [33/304] Performing configure step for 'fftw3_double_external' 2026-05-29T13:37:23,238 [34/304] Performing build step for 'libjpeg_external' 2026-05-29T13:37:24,208 [35/304] Performing install step for 'libjpeg_external' 2026-05-29T13:37:24,210 -- Install configuration: "Release" 2026-05-29T13:37:24,211 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/lib/libjpeg.a 2026-05-29T13:37:24,212 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/bin/cjpeg 2026-05-29T13:37:24,213 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/bin/djpeg 2026-05-29T13:37:24,214 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/bin/jpegtran 2026-05-29T13:37:24,215 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/bin/rdjpgcom 2026-05-29T13:37:24,216 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/bin/wrjpgcom 2026-05-29T13:37:24,217 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/README.ijg 2026-05-29T13:37:24,223 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/README.md 2026-05-29T13:37:24,224 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/example.c 2026-05-29T13:37:24,225 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/tjcomp.c 2026-05-29T13:37:24,226 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/tjdecomp.c 2026-05-29T13:37:24,226 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/tjtran.c 2026-05-29T13:37:24,227 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/libjpeg.txt 2026-05-29T13:37:24,229 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/structure.txt 2026-05-29T13:37:24,230 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/usage.txt 2026-05-29T13:37:24,231 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/wizard.txt 2026-05-29T13:37:24,235 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/LICENSE.md 2026-05-29T13:37:24,235 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/man/man1/cjpeg.1 2026-05-29T13:37:24,239 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/man/man1/djpeg.1 2026-05-29T13:37:24,248 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/man/man1/jpegtran.1 2026-05-29T13:37:24,252 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/man/man1/rdjpgcom.1 2026-05-29T13:37:24,253 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/share/man/man1/wrjpgcom.1 2026-05-29T13:37:24,257 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/lib/pkgconfig/libjpeg.pc 2026-05-29T13:37:24,260 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/lib/cmake/libjpeg-turbo/libjpeg-turboConfig.cmake 2026-05-29T13:37:24,261 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/lib/cmake/libjpeg-turbo/libjpeg-turboConfigVersion.cmake 2026-05-29T13:37:24,263 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/lib/cmake/libjpeg-turbo/libjpeg-turboTargets.cmake 2026-05-29T13:37:24,265 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/lib/cmake/libjpeg-turbo/libjpeg-turboTargets-release.cmake 2026-05-29T13:37:24,267 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/include/jconfig.h 2026-05-29T13:37:24,268 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/include/jerror.h 2026-05-29T13:37:24,272 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/include/jmorecfg.h 2026-05-29T13:37:24,273 -- Installing: /tmp/tmp1covsx7v/build/external/libjpeg-turbo/include/jpeglib.h 2026-05-29T13:37:24,274 [36/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_fax3.c.o 2026-05-29T13:37:24,819 [37/304] Completed 'libjpeg_external' 2026-05-29T13:37:25,952 [38/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_flush.c.o 2026-05-29T13:37:26,173 [39/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_fax3sm.c.o 2026-05-29T13:37:28,075 [40/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_hash_set.c.o 2026-05-29T13:37:29,373 [41/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_jbig.c.o 2026-05-29T13:37:40,524 [42/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_jpeg.c.o 2026-05-29T13:37:41,080 [43/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_jpeg_12.c.o 2026-05-29T13:37:48,281 [44/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_getimage.c.o 2026-05-29T13:37:49,023 [45/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_lerc.c.o 2026-05-29T13:37:51,624 [46/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_lzma.c.o 2026-05-29T13:37:57,153 [47/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_lzw.c.o 2026-05-29T13:37:58,612 [48/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_next.c.o 2026-05-29T13:37:58,676 [49/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_luv.c.o 2026-05-29T13:38:02,218 [50/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_open.c.o 2026-05-29T13:38:04,307 [51/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_packbits.c.o 2026-05-29T13:38:12,376 [52/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_ojpeg.c.o 2026-05-29T13:38:17,709 [53/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_pixarlog.c.o 2026-05-29T13:38:19,901 [54/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_predict.c.o 2026-05-29T13:38:22,617 [55/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_print.c.o 2026-05-29T13:38:25,192 [56/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_strip.c.o 2026-05-29T13:38:25,864 [57/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_read.c.o 2026-05-29T13:38:27,303 [58/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_swab.c.o 2026-05-29T13:38:27,753 [59/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_thunder.c.o 2026-05-29T13:38:28,543 [60/304] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_version.c.o 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object _deps/libtiff-build/contrib/iptcutil/CMakeFiles/iptcutil.dir/iptcutil.c.o 2026-05-29T13:40:06,044 [131/304] Linking CXX executable _deps/libtiff-build/contrib/iptcutil/iptcutil 2026-05-29T13:40:34,380 [132/304] Performing build step for 'fftw3_float_external' 2026-05-29T13:40:34,844 [133/304] Performing install step for 'fftw3_float_external' 2026-05-29T13:40:34,845 -- Install configuration: "Release" 2026-05-29T13:40:34,846 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/libfftw3f.a 2026-05-29T13:40:34,847 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/libfftw3f_threads.a 2026-05-29T13:40:34,847 -- Up-to-date: /tmp/tmp1covsx7v/build/external/fftw3/lib/libfftw3f.a 2026-05-29T13:40:34,848 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/include/fftw3.h 2026-05-29T13:40:34,849 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/include/fftw3.f 2026-05-29T13:40:34,850 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/include/fftw3l.f03 2026-05-29T13:40:34,851 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/include/fftw3q.f03 2026-05-29T13:40:34,852 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/include/fftw3.f03 2026-05-29T13:40:34,853 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/pkgconfig/fftw3f.pc 2026-05-29T13:40:34,854 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/cmake/fftw3f/FFTW3fConfig.cmake 2026-05-29T13:40:34,855 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/cmake/fftw3f/FFTW3fConfigVersion.cmake 2026-05-29T13:40:34,856 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/cmake/fftw3f/FFTW3LibraryDepends.cmake 2026-05-29T13:40:34,857 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/cmake/fftw3f/FFTW3LibraryDepends-release.cmake 2026-05-29T13:40:35,224 [134/304] Completed 'fftw3_float_external' 2026-05-29T13:40:50,985 [135/304] Performing build step for 'fftw3_double_external' 2026-05-29T13:40:51,327 [136/304] Performing install step for 'fftw3_double_external' 2026-05-29T13:40:51,328 -- Install configuration: "Release" 2026-05-29T13:40:51,329 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/libfftw3.a 2026-05-29T13:40:51,330 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/libfftw3_threads.a 2026-05-29T13:40:51,330 -- Up-to-date: /tmp/tmp1covsx7v/build/external/fftw3/lib/libfftw3.a 2026-05-29T13:40:51,331 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/include/fftw3.h 2026-05-29T13:40:51,332 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/include/fftw3.f 2026-05-29T13:40:51,333 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/include/fftw3l.f03 2026-05-29T13:40:51,334 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/include/fftw3q.f03 2026-05-29T13:40:51,334 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/include/fftw3.f03 2026-05-29T13:40:51,335 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/pkgconfig/fftw3.pc 2026-05-29T13:40:51,337 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/cmake/fftw3/FFTW3Config.cmake 2026-05-29T13:40:51,337 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/cmake/fftw3/FFTW3ConfigVersion.cmake 2026-05-29T13:40:51,338 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/cmake/fftw3/FFTW3LibraryDepends.cmake 2026-05-29T13:40:51,339 -- Installing: /tmp/tmp1covsx7v/build/external/fftw3/lib/cmake/fftw3/FFTW3LibraryDepends-release.cmake 2026-05-29T13:40:51,674 [137/304] Completed 'fftw3_double_external' 2026-05-29T13:43:15,659 [138/304] Performing build step for 'hdf5_external' 2026-05-29T13:43:19,693 [139/304] Performing install step for 'hdf5_external' 2026-05-29T13:43:19,695 -- Install configuration: "" 2026-05-29T13:43:19,695 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/hdf5.h 2026-05-29T13:43:19,696 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5api_adpt.h 2026-05-29T13:43:19,697 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5encode.h 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Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5FDcore.h 2026-05-29T13:43:19,705 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5FDdevelop.h 2026-05-29T13:43:19,706 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5FDdirect.h 2026-05-29T13:43:19,707 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5FDfamily.h 2026-05-29T13:43:19,707 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5FDhdfs.h 2026-05-29T13:43:19,708 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5FDlog.h 2026-05-29T13:43:19,709 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5FDmirror.h 2026-05-29T13:43:19,710 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5FDmpi.h 2026-05-29T13:43:19,710 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5FDmpio.h 2026-05-29T13:43:19,711 -- Installing: /tmp/tmp1covsx7v/build/external/hdf5/include/H5FDmulti.h 2026-05-29T13:43:19,712 -- Installing: 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CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/messagedisplay.cc.o 2026-05-29T13:45:37,571 [187/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/minmax.cc.o 2026-05-29T13:45:38,030 [188/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/firconvolve.cc.o 2026-05-29T13:45:38,770 [189/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/kerneldiff2.cc.o 2026-05-29T13:45:38,836 [190/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/kernelintegrate.cc.o 2026-05-29T13:45:38,985 [191/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/interpolate.cc.o 2026-05-29T13:45:39,263 [192/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/movingaverage.cc.o 2026-05-29T13:45:40,235 [193/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/pyramidfilters.cc.o 2026-05-29T13:45:40,337 [194/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/positivepower.cc.o 2026-05-29T13:45:40,886 [195/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/swap.cc.o 2026-05-29T13:45:41,517 [196/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/timestamp.cc.o 2026-05-29T13:45:41,635 [197/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/polynomial.cc.o 2026-05-29T13:45:42,176 [198/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/morphology.cc.o 2026-05-29T13:45:42,254 [199/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/wavelet.cc.o 2026-05-29T13:45:42,345 [200/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/round.cc.o 2026-05-29T13:45:42,794 [201/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/traceline.cc.o 2026-05-29T13:45:44,207 [202/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/waveletfiltersfract.cc.o 2026-05-29T13:45:44,555 [203/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/window.cc.o 2026-05-29T13:45:44,562 [204/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/pyramidtools.cc.o 2026-05-29T13:45:44,701 [205/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/waveletfilters.cc.o 2026-05-29T13:45:45,202 [206/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/linearalgebra.cc.o 2026-05-29T13:45:45,578 [207/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/wavelettools.cc.o 2026-05-29T13:45:48,555 [208/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/comment_list.cpp.o 2026-05-29T13:45:52,957 [209/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/linear_system_helper.cpp.o 2026-05-29T13:46:09,353 [210/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/histogram.cpp.o 2026-05-29T13:46:22,162 [211/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_base.cpp.o 2026-05-29T13:46:23,709 [212/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/geometry.cpp.o 2026-05-29T13:46:23,710 In file included from /usr/include/c++/12/vector:70, 2026-05-29T13:46:23,711 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/matrix1d.h:31, 2026-05-29T13:46:23,712 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:34, 2026-05-29T13:46:23,713 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/geometry.h:29, 2026-05-29T13:46:23,714 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/geometry.cpp:29: 2026-05-29T13:46:23,715 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2026-05-29T13:46:23,716 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-29T13:46:23,717 439 | vector<_Tp, _Alloc>:: 2026-05-29T13:46:23,718 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:23,719 In file included from /usr/include/c++/12/vector:64: 2026-05-29T13:46:23,720 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2026-05-29T13:46:23,721 inlined from ‘void computeCircleAroundE(const Matrix2D&, double, double, std::vector >&)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/geometry.cpp:1111:36: 2026-05-29T13:46:23,722 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-29T13:46:23,723 1287 | _M_realloc_insert(end(), __x); 2026-05-29T13:46:23,724 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-29T13:46:23,725 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2026-05-29T13:46:23,727 inlined from ‘void computeCircleAroundE(const Matrix2D&, double, double, std::vector >&)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/geometry.cpp:1112:36: 2026-05-29T13:46:23,727 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-29T13:46:23,728 1287 | _M_realloc_insert(end(), __x); 2026-05-29T13:46:23,729 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-29T13:46:23,730 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2026-05-29T13:46:23,731 inlined from ‘void computeCircleAroundE(const Matrix2D&, double, double, std::vector >&)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/geometry.cpp:1113:36: 2026-05-29T13:46:23,732 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-05-29T13:46:23,734 1287 | _M_realloc_insert(end(), __x); 2026-05-29T13:46:23,734 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-05-29T13:46:27,846 [213/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/matrix1d.cpp.o 2026-05-29T13:46:34,072 [214/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_generator.cpp.o 2026-05-29T13:46:34,236 [215/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/matrix2d.cpp.o 2026-05-29T13:46:34,237 In file included from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.h:32, 2026-05-29T13:46:34,238 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/matrix2d.cpp:29: 2026-05-29T13:46:34,238 In function ‘void free_Tmatrix(T**&, int, int, int, int) [with T = double]’, 2026-05-29T13:46:34,239 inlined from ‘void free_Tmatrix(T**&, int, int, int, int) [with T = double]’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:61:25, 2026-05-29T13:46:34,240 inlined from ‘void Matrix2D::killAdaptationForNumericalRecipes(T**) const [with T = double]’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/matrix2d.h:890:21: 2026-05-29T13:46:34,241 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:67:17: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*))’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:46:34,242 67 | free((char*)(m[i] + nrl)); 2026-05-29T13:46:34,243 | ~~~~^~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:34,244 In function ‘void free_Tmatrix(T**&, int, int, int, int) [with T = int]’, 2026-05-29T13:46:34,245 inlined from ‘void free_Tmatrix(T**&, int, int, int, int) [with T = int]’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:61:25, 2026-05-29T13:46:34,246 inlined from ‘void Matrix2D::killAdaptationForNumericalRecipes(T**) const [with T = int]’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/matrix2d.h:890:21: 2026-05-29T13:46:34,247 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:67:17: warning: ‘void free(void*)’ called on pointer ‘*(int**)((char*))’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:46:34,248 67 | free((char*)(m[i] + nrl)); 2026-05-29T13:46:34,249 | ~~~~^~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:34,250 In function ‘void free_Tmatrix(T**&, int, int, int, int) [with T = float]’, 2026-05-29T13:46:34,251 inlined from ‘void free_Tmatrix(T**&, int, int, int, int) [with T = float]’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:61:25, 2026-05-29T13:46:34,252 inlined from ‘void Matrix2D::killAdaptationForNumericalRecipes(T**) const [with T = float]’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/matrix2d.h:890:21: 2026-05-29T13:46:34,253 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:67:17: warning: ‘void free(void*)’ called on pointer ‘*(float**)((char*))’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:46:34,254 67 | free((char*)(m[i] + nrl)); 2026-05-29T13:46:34,255 | ~~~~^~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:34,256 In function ‘void free_Tmatrix(T**&, int, int, int, int) [with T = unsigned char]’, 2026-05-29T13:46:34,256 inlined from ‘void free_Tmatrix(T**&, int, int, int, int) [with T = unsigned char]’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:61:25, 2026-05-29T13:46:34,258 inlined from ‘void Matrix2D::killAdaptationForNumericalRecipes(T**) const [with T = unsigned char]’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/matrix2d.h:890:21: 2026-05-29T13:46:34,259 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:67:17: warning: ‘void free(void*)’ called on pointer ‘*(unsigned char**)((char*))’ with nonzero offset 1 [-Wfree-nonheap-object] 2026-05-29T13:46:34,260 67 | free((char*)(m[i] + nrl)); 2026-05-29T13:46:34,260 | ~~~~^~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:34,261 In file included from /usr/include/c++/12/vector:70, 2026-05-29T13:46:34,262 from /usr/include/c++/12/queue:61, 2026-05-29T13:46:34,263 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/matrix2d.cpp:26: 2026-05-29T13:46:34,270 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::complex}; _Tp = std::complex; _Alloc = std::allocator >]’: 2026-05-29T13:46:34,271 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-05-29T13:46:34,272 439 | vector<_Tp, _Alloc>:: 2026-05-29T13:46:34,273 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:34,274 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::complex}; _Tp = std::complex; _Alloc = std::allocator >]’, 2026-05-29T13:46:34,274 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::complex; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-29T13:46:34,275 inlined from ‘void allEigs(const Matrix2D&, std::vector >&)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/matrix2d.cpp:357:17: 2026-05-29T13:46:34,276 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-05-29T13:46:34,277 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-29T13:46:34,278 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:37,845 [216/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_object.cpp.o 2026-05-29T13:46:37,845 In file included from /usr/include/c++/12/vector:70, 2026-05-29T13:46:37,847 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_strings.h:29, 2026-05-29T13:46:37,848 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_label.h:31, 2026-05-29T13:46:37,849 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_object.h:31, 2026-05-29T13:46:37,850 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_object.cpp:30: 2026-05-29T13:46:37,851 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’: 2026-05-29T13:46:37,851 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-29T13:46:37,853 439 | vector<_Tp, _Alloc>:: 2026-05-29T13:46:37,854 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:37,855 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’, 2026-05-29T13:46:37,856 inlined from ‘bool MDObject::fromStream(std::istream&, bool)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_object.cpp:505:47: 2026-05-29T13:46:37,857 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-29T13:46:37,859 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-29T13:46:37,860 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:38,881 [217/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_db.cpp.o 2026-05-29T13:46:38,882 In file included from /usr/include/c++/12/vector:70, 2026-05-29T13:46:38,883 from /usr/include/c++/12/bits/random.h:34, 2026-05-29T13:46:38,884 from /usr/include/c++/12/random:49, 2026-05-29T13:46:38,884 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_db.cpp:28: 2026-05-29T13:46:38,885 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = MDObject; _Alloc = std::allocator]’: 2026-05-29T13:46:38,886 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-29T13:46:38,887 523 | vector<_Tp, _Alloc>:: 2026-05-29T13:46:38,888 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:38,889 In file included from /usr/include/c++/12/vector:64: 2026-05-29T13:46:38,890 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = MDObject; _Alloc = std::allocator]’, 2026-05-29T13:46:38,890 inlined from ‘virtual void MetaDataDb::getColumnValues(MDLabel, std::vector&) const’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_db.cpp:126:21: 2026-05-29T13:46:38,891 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-29T13:46:38,892 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2026-05-29T13:46:38,893 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:38,894 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MDLabel&}; _Tp = MDObject; _Alloc = std::allocator]’: 2026-05-29T13:46:38,895 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-29T13:46:38,896 439 | vector<_Tp, _Alloc>:: 2026-05-29T13:46:38,897 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:38,899 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const MDLabel&}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-05-29T13:46:38,899 inlined from ‘std::vector MetaDataDb::getObjectsForActiveLabels() const’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_db.cpp:207:28: 2026-05-29T13:46:38,900 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-29T13:46:38,902 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-29T13:46:38,903 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:39,665 [218/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_query.cpp.o 2026-05-29T13:46:43,683 [219/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_row_sql.cpp.o 2026-05-29T13:46:44,986 [220/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_row_vec.cpp.o 2026-05-29T13:46:44,988 In file included from /usr/include/c++/12/vector:70, 2026-05-29T13:46:44,989 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_strings.h:29, 2026-05-29T13:46:44,989 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_label.h:31, 2026-05-29T13:46:44,990 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_row_base.h:31, 2026-05-29T13:46:44,992 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_row_vec.h:30, 2026-05-29T13:46:44,993 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_row_vec.cpp:29: 2026-05-29T13:46:44,994 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’: 2026-05-29T13:46:44,995 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-29T13:46:44,996 439 | vector<_Tp, _Alloc>:: 2026-05-29T13:46:44,997 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:44,998 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-05-29T13:46:44,998 inlined from ‘size_t MDRowVec::newCol(MDLabel)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_row_vec.cpp:167:31: 2026-05-29T13:46:45,000 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-29T13:46:45,000 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-29T13:46:45,001 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:45,003 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-05-29T13:46:45,004 inlined from ‘size_t MDRowVec::newCol(MDLabel)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_row_vec.cpp:179:23: 2026-05-29T13:46:45,005 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-29T13:46:45,006 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-29T13:46:45,007 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:45,008 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-05-29T13:46:45,009 inlined from ‘virtual void MDRowVec::setValue(const MDObject&)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_row_vec.cpp:208:31: 2026-05-29T13:46:45,010 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-29T13:46:45,011 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-29T13:46:45,013 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:47,436 [221/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_extension.cpp.o 2026-05-29T13:46:51,845 [222/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array_base.cpp.o 2026-05-29T13:46:52,263 [223/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array.cpp.o 2026-05-29T13:46:52,264 FAILED: CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array.cpp.o 2026-05-29T13:46:52,266 /usr/bin/arm-linux-gnueabihf-g++ -DxmippLib_EXPORTS -I/tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src -I/tmp/tmp1covsx7v/build/_deps/xmipp3_sources-src/src/xmipp/libraries -I/tmp/pip-wheel-0ojvt9ro/pyxmipp3_d0f242eb90aa4a01b44ac04a0fab8958/src -I/api -I/tmp/tmp1covsx7v/build/_deps/sqlite3-src -I/tmp/tmp1covsx7v/build/_deps/libsvm-src -I/tmp/tmp1covsx7v/build/_deps/libtiff-src/libtiff -I/tmp/tmp1covsx7v/build/_deps/libtiff-build/libtiff -isystem /usr/include/python3.11 -isystem /tmp/pip-build-env-2ndpxokq/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -isystem /tmp/tmp1covsx7v/build/external/hdf5/include -isystem /tmp/tmp1covsx7v/build/external/fftw3/include -isystem /tmp/tmp1covsx7v/build/external/libjpeg-turbo/include -O3 -DNDEBUG -fPIC -std=gnu++17 -MD -MT CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array.cpp.o -MF CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array.cpp.o.d -o CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array.cpp.o -c /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp 2026-05-29T13:46:52,266 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1138:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(bool*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,267 1138 | template FILE* MultidimArray::mmapFile(bool*&, unsigned long) const; 2026-05-29T13:46:52,268 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,269 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = bool; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,270 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-05-29T13:46:52,271 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,272 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1139:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(float*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,273 1139 | template FILE* MultidimArray::mmapFile(float*&, unsigned long) const; 2026-05-29T13:46:52,274 | ^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,274 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = float; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,275 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-05-29T13:46:52,276 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,277 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1140:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(char*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,278 1140 | template FILE* MultidimArray::mmapFile(char*&, unsigned long) const; 2026-05-29T13:46:52,279 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,280 In file included from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:30: 2026-05-29T13:46:52,281 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:344:11: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = char; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,282 344 | FILE* mmapFile(T* &_data, size_t nzyxDim) const; 2026-05-29T13:46:52,283 | ^~~~~~~~ 2026-05-29T13:46:52,284 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1141:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(int*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,285 1141 | template FILE* MultidimArray::mmapFile(int*&, unsigned long) const; 2026-05-29T13:46:52,286 | ^~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,287 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:344:11: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = int; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,288 344 | FILE* mmapFile(T* &_data, size_t nzyxDim) const; 2026-05-29T13:46:52,289 | ^~~~~~~~ 2026-05-29T13:46:52,290 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1142:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(long int*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,290 1142 | template FILE* MultidimArray::mmapFile(long*&, unsigned long) const; 2026-05-29T13:46:52,291 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,292 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = long int; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,293 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-05-29T13:46:52,310 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,311 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1143:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(short int*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,311 1143 | template FILE* MultidimArray::mmapFile(short*&, unsigned long) const; 2026-05-29T13:46:52,312 | ^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,313 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = short int; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,314 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-05-29T13:46:52,315 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,316 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1144:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(unsigned char*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,317 1144 | template FILE* MultidimArray::mmapFile(unsigned char*&, unsigned long) const; 2026-05-29T13:46:52,318 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,319 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = unsigned char; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,320 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-05-29T13:46:52,321 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,322 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1145:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(unsigned int*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,323 1145 | template FILE* MultidimArray::mmapFile(unsigned int*&, unsigned long) const; 2026-05-29T13:46:52,324 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,324 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = unsigned int; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,325 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-05-29T13:46:52,326 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,328 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1146:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(long unsigned int*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,329 1146 | template FILE* MultidimArray::mmapFile(unsigned long*&, unsigned long) const; 2026-05-29T13:46:52,330 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,331 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = long unsigned int; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,332 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-05-29T13:46:52,333 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,333 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1147:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(short unsigned int*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,334 1147 | template FILE* MultidimArray::mmapFile(unsigned short*&, unsigned long) const; 2026-05-29T13:46:52,335 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,336 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = short unsigned int; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,337 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-05-29T13:46:52,339 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,340 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1148:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray >::mmapFile(std::complex*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,341 1148 | template FILE* MultidimArray>::mmapFile(std::complex*&, unsigned long) const; 2026-05-29T13:46:52,342 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,343 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:344:11: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = std::complex; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,344 344 | FILE* mmapFile(T* &_data, size_t nzyxDim) const; 2026-05-29T13:46:52,345 | ^~~~~~~~ 2026-05-29T13:46:52,346 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1149:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(half_float::half*&, long unsigned int) const’ does not match any template declaration 2026-05-29T13:46:52,347 1149 | template FILE* MultidimArray::mmapFile(half_float::half*&, unsigned long) const; 2026-05-29T13:46:52,348 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,349 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = half_float::half; FILE = FILE; size_t = unsigned int]’ 2026-05-29T13:46:52,350 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-05-29T13:46:52,351 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,360 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1152:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,360 1152 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,361 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,363 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = bool]’ 2026-05-29T13:46:52,364 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,364 | ^~~~~~ 2026-05-29T13:46:52,365 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = bool; size_t = unsigned int]’ 2026-05-29T13:46:52,366 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-05-29T13:46:52,367 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,368 In file included from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:36: 2026-05-29T13:46:52,369 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,370 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,371 | ^~~~~~ 2026-05-29T13:46:52,371 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,372 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,373 | ^~~~~~ 2026-05-29T13:46:52,374 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,375 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,376 | ^~~~~~ 2026-05-29T13:46:52,377 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,378 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,379 | ^~~~~~ 2026-05-29T13:46:52,380 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1153:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,381 1153 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,382 | ^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,382 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = float]’ 2026-05-29T13:46:52,383 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,384 | ^~~~~~ 2026-05-29T13:46:52,385 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = float; size_t = unsigned int]’ 2026-05-29T13:46:52,386 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-05-29T13:46:52,387 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,388 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,390 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,391 | ^~~~~~ 2026-05-29T13:46:52,392 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,393 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,394 | ^~~~~~ 2026-05-29T13:46:52,395 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,396 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,397 | ^~~~~~ 2026-05-29T13:46:52,398 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,400 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,401 | ^~~~~~ 2026-05-29T13:46:52,403 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1154:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,403 1154 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,420 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,420 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = char]’ 2026-05-29T13:46:52,421 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,422 | ^~~~~~ 2026-05-29T13:46:52,423 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:475:10: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = char; size_t = unsigned int]’ 2026-05-29T13:46:52,424 475 | void resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy=true); 2026-05-29T13:46:52,425 | ^~~~~~ 2026-05-29T13:46:52,426 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,427 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,427 | ^~~~~~ 2026-05-29T13:46:52,428 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,429 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,430 | ^~~~~~ 2026-05-29T13:46:52,431 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,432 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,434 | ^~~~~~ 2026-05-29T13:46:52,435 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,436 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,437 | ^~~~~~ 2026-05-29T13:46:52,438 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1155:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,439 1155 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,440 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,441 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = long int]’ 2026-05-29T13:46:52,442 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,444 | ^~~~~~ 2026-05-29T13:46:52,444 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = long int; size_t = unsigned int]’ 2026-05-29T13:46:52,445 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-05-29T13:46:52,446 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,447 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,448 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,448 | ^~~~~~ 2026-05-29T13:46:52,449 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,450 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,451 | ^~~~~~ 2026-05-29T13:46:52,452 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,453 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,454 | ^~~~~~ 2026-05-29T13:46:52,455 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,456 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,457 | ^~~~~~ 2026-05-29T13:46:52,458 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1156:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,459 1156 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,460 | ^~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,461 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = int]’ 2026-05-29T13:46:52,462 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,463 | ^~~~~~ 2026-05-29T13:46:52,464 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:475:10: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = int; size_t = unsigned int]’ 2026-05-29T13:46:52,465 475 | void resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy=true); 2026-05-29T13:46:52,466 | ^~~~~~ 2026-05-29T13:46:52,466 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,467 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,468 | ^~~~~~ 2026-05-29T13:46:52,469 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,470 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,471 | ^~~~~~ 2026-05-29T13:46:52,472 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,473 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,475 | ^~~~~~ 2026-05-29T13:46:52,476 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,477 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,478 | ^~~~~~ 2026-05-29T13:46:52,478 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1157:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,479 1157 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,480 | ^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,481 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = short int]’ 2026-05-29T13:46:52,482 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,483 | ^~~~~~ 2026-05-29T13:46:52,484 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = short int; size_t = unsigned int]’ 2026-05-29T13:46:52,484 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-05-29T13:46:52,485 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,486 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,487 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,488 | ^~~~~~ 2026-05-29T13:46:52,489 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,490 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,491 | ^~~~~~ 2026-05-29T13:46:52,492 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,492 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,493 | ^~~~~~ 2026-05-29T13:46:52,494 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,495 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,496 | ^~~~~~ 2026-05-29T13:46:52,497 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1158:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,498 1158 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,498 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,499 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = unsigned char]’ 2026-05-29T13:46:52,500 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,501 | ^~~~~~ 2026-05-29T13:46:52,502 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = unsigned char; size_t = unsigned int]’ 2026-05-29T13:46:52,504 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-05-29T13:46:52,505 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,506 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,506 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,507 | ^~~~~~ 2026-05-29T13:46:52,508 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,509 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,510 | ^~~~~~ 2026-05-29T13:46:52,511 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,512 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,512 | ^~~~~~ 2026-05-29T13:46:52,513 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,514 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,515 | ^~~~~~ 2026-05-29T13:46:52,516 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1159:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,517 1159 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,518 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,519 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = unsigned int]’ 2026-05-29T13:46:52,519 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,520 | ^~~~~~ 2026-05-29T13:46:52,521 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = unsigned int; size_t = unsigned int]’ 2026-05-29T13:46:52,522 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-05-29T13:46:52,523 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,524 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,525 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,526 | ^~~~~~ 2026-05-29T13:46:52,527 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,528 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,529 | ^~~~~~ 2026-05-29T13:46:52,530 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,531 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,532 | ^~~~~~ 2026-05-29T13:46:52,533 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,533 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,534 | ^~~~~~ 2026-05-29T13:46:52,535 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1160:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,536 1160 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,537 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,538 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = long unsigned int]’ 2026-05-29T13:46:52,539 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,540 | ^~~~~~ 2026-05-29T13:46:52,541 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = long unsigned int; size_t = unsigned int]’ 2026-05-29T13:46:52,542 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-05-29T13:46:52,543 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,543 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,544 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,545 | ^~~~~~ 2026-05-29T13:46:52,546 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,547 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,548 | ^~~~~~ 2026-05-29T13:46:52,549 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,550 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,551 | ^~~~~~ 2026-05-29T13:46:52,552 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,553 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,554 | ^~~~~~ 2026-05-29T13:46:52,555 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1161:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,556 1161 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,557 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,558 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = short unsigned int]’ 2026-05-29T13:46:52,559 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,560 | ^~~~~~ 2026-05-29T13:46:52,561 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = short unsigned int; size_t = unsigned int]’ 2026-05-29T13:46:52,561 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-05-29T13:46:52,563 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,564 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,565 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,565 | ^~~~~~ 2026-05-29T13:46:52,566 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,567 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,568 | ^~~~~~ 2026-05-29T13:46:52,569 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,569 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,570 | ^~~~~~ 2026-05-29T13:46:52,571 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,572 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,573 | ^~~~~~ 2026-05-29T13:46:52,574 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1162:15: error: template-id ‘resize<>’ for ‘void MultidimArray >::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,574 1162 | template void MultidimArray>::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,575 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,576 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = std::complex]’ 2026-05-29T13:46:52,577 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,578 | ^~~~~~ 2026-05-29T13:46:52,579 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:475:10: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = std::complex; size_t = unsigned int]’ 2026-05-29T13:46:52,580 475 | void resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy=true); 2026-05-29T13:46:52,581 | ^~~~~~ 2026-05-29T13:46:52,582 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,583 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,584 | ^~~~~~ 2026-05-29T13:46:52,585 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,585 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,586 | ^~~~~~ 2026-05-29T13:46:52,587 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,588 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,589 | ^~~~~~ 2026-05-29T13:46:52,590 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,591 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,591 | ^~~~~~ 2026-05-29T13:46:52,592 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1163:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-05-29T13:46:52,593 1163 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-05-29T13:46:52,595 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,595 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = half_float::half]’ 2026-05-29T13:46:52,596 490 | void resize(const MultidimArray &v, bool copy = true) 2026-05-29T13:46:52,597 | ^~~~~~ 2026-05-29T13:46:52,598 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = half_float::half; size_t = unsigned int]’ 2026-05-29T13:46:52,598 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-05-29T13:46:52,599 | ^~~~~~~~~~~~~~~~ 2026-05-29T13:46:52,600 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-05-29T13:46:52,601 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,602 | ^~~~~~ 2026-05-29T13:46:52,603 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-05-29T13:46:52,604 773 | void resize(size_t Ydim, size_t Xdim) 2026-05-29T13:46:52,605 | ^~~~~~ 2026-05-29T13:46:52,606 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-05-29T13:46:52,607 785 | void resize(size_t Xdim) 2026-05-29T13:46:52,608 | ^~~~~~ 2026-05-29T13:46:52,609 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-05-29T13:46:52,610 793 | void resize(ArrayDim &adim, bool copy=true); 2026-05-29T13:46:52,611 | ^~~~~~ 2026-05-29T13:47:06,148 [224/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array_generic.cpp.o 2026-05-29T13:47:08,234 [225/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_sql.cpp.o 2026-05-29T13:47:08,234 In file included from /usr/include/c++/12/vector:70, 2026-05-29T13:47:08,236 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/xmipp_strings.h:29, 2026-05-29T13:47:08,237 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_sql.h:31, 2026-05-29T13:47:08,238 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_sql.cpp:29: 2026-05-29T13:47:08,239 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MDLabel&}; _Tp = MDObject; _Alloc = std::allocator]’: 2026-05-29T13:47:08,240 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-29T13:47:08,241 439 | vector<_Tp, _Alloc>:: 2026-05-29T13:47:08,242 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:08,244 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const MDLabel&}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-05-29T13:47:08,245 inlined from ‘bool MDSql::getObjectsValues(const std::vector&, std::vector&)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_sql.cpp:524:36: 2026-05-29T13:47:08,246 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-29T13:47:08,248 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-29T13:47:08,248 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:10,206 [226/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_vec.cpp.o 2026-05-29T13:47:10,206 In file included from /usr/include/c++/12/vector:70, 2026-05-29T13:47:10,207 from /usr/include/c++/12/bits/random.h:34, 2026-05-29T13:47:10,208 from /usr/include/c++/12/random:49, 2026-05-29T13:47:10,208 from /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_vec.cpp:30: 2026-05-29T13:47:10,209 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MDObject&}; _Tp = MDObject; _Alloc = std::allocator]’: 2026-05-29T13:47:10,210 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-29T13:47:10,211 439 | vector<_Tp, _Alloc>:: 2026-05-29T13:47:10,211 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:10,212 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const MDObject&}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-05-29T13:47:10,213 inlined from ‘virtual void MetaDataVec::getColumnValues(MDLabel, std::vector&) const’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_vec.cpp:368:31: 2026-05-29T13:47:10,214 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-29T13:47:10,215 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-29T13:47:10,216 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:10,217 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’: 2026-05-29T13:47:10,218 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-05-29T13:47:10,220 439 | vector<_Tp, _Alloc>:: 2026-05-29T13:47:10,220 | ^~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:10,221 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-05-29T13:47:10,222 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MDObject; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-05-29T13:47:10,223 inlined from ‘void MetaDataVec::_setRow(const MDRow&, size_t)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_vec.cpp:214:26: 2026-05-29T13:47:10,224 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-29T13:47:10,225 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-29T13:47:10,226 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:10,227 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-05-29T13:47:10,228 inlined from ‘void MetaDataVec::_expand(MetaDataVecRow&, size_t)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/metadata_vec.cpp:888:25: 2026-05-29T13:47:10,229 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-05-29T13:47:10,230 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-05-29T13:47:10,231 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:15,600 [227/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_static.cpp.o 2026-05-29T13:47:21,293 [228/304] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp.o 2026-05-29T13:47:21,293 In function ‘void free_dm(double**, int)’, 2026-05-29T13:47:21,293 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5429:12: 2026-05-29T13:47:21,294 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9029:13: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*))’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,295 9029 | free((char *)(m[i] + 1)); 2026-05-29T13:47:21,295 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,296 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9030:9: warning: ‘void free(void*)’ called on pointer ‘a’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,297 9030 | free((char *)(m + 1)); 2026-05-29T13:47:21,297 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,298 In function ‘void free_dm(double**, int)’, 2026-05-29T13:47:21,299 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5430:12: 2026-05-29T13:47:21,300 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9029:13: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*))’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,300 9029 | free((char *)(m[i] + 1)); 2026-05-29T13:47:21,301 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,301 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9030:9: warning: ‘void free(void*)’ called on pointer ‘hess’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,302 9030 | free((char *)(m + 1)); 2026-05-29T13:47:21,302 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,303 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9030:9: warning: ‘void free(void*)’ called on pointer ‘hess’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,304 In function ‘void free_dm(double**, int)’, 2026-05-29T13:47:21,304 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5431:12: 2026-05-29T13:47:21,305 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9029:13: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*))’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,305 9029 | free((char *)(m[i] + 1)); 2026-05-29T13:47:21,306 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,306 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9030:9: warning: ‘void free(void*)’ called on pointer ‘hess1’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,307 9030 | free((char *)(m + 1)); 2026-05-29T13:47:21,307 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,307 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,308 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5432:12: 2026-05-29T13:47:21,308 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘di’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,308 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,309 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,309 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,310 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5433:12: 2026-05-29T13:47:21,310 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘d’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,310 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,311 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,312 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,312 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5434:12: 2026-05-29T13:47:21,313 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘gm’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,313 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,314 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,314 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,314 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5435:12: 2026-05-29T13:47:21,315 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘grdpsf’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,315 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,316 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,316 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,317 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5436:12: 2026-05-29T13:47:21,317 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘penp’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,318 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,318 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,319 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,320 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5437:12: 2026-05-29T13:47:21,320 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘bl’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,321 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,321 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,321 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,322 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5438:12: 2026-05-29T13:47:21,322 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘bu’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,323 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,323 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,323 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,324 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5439:12: 2026-05-29T13:47:21,324 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘clamda’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,325 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,325 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,326 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,326 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5440:12: 2026-05-29T13:47:21,327 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘cvec’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,327 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,328 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,328 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,329 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5441:12: 2026-05-29T13:47:21,329 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘psmu’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,330 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,330 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,331 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,331 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5442:12: 2026-05-29T13:47:21,332 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘span’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,332 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,333 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,333 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,334 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5443:12: 2026-05-29T13:47:21,334 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘backup’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,335 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,335 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,335 In function ‘void free_iv(int*)’, 2026-05-29T13:47:21,336 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5444:12: 2026-05-29T13:47:21,336 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9007:9: warning: ‘void free(void*)’ called on pointer ‘iact’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,337 9007 | free((char *)(v + 1)); 2026-05-29T13:47:21,337 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,337 In function ‘void free_iv(int*)’, 2026-05-29T13:47:21,338 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5445:12: 2026-05-29T13:47:21,338 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9007:9: warning: ‘void free(void*)’ called on pointer ‘iskip’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,339 9007 | free((char *)(v + 1)); 2026-05-29T13:47:21,339 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,340 In function ‘void free_iv(int*)’, 2026-05-29T13:47:21,340 inlined from ‘void dealloc1(int, int, double**, double**, double**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5446:12: 2026-05-29T13:47:21,341 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9007:9: warning: ‘void free(void*)’ called on pointer ‘istore’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,342 9007 | free((char *)(v + 1)); 2026-05-29T13:47:21,342 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,343 In function ‘void free_dm(double**, int)’, 2026-05-29T13:47:21,343 inlined from ‘void step1(int, int, int, int, int, int, int, int, int, int, int, int*, int*, int*, int*, int*, int*, int*, int*, int, double, _objective*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, _constraint*, double*, double*, _violation*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:7556:12: 2026-05-29T13:47:21,344 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9029:13: warning: ‘void free(void*)’ called on pointer ‘make_dm’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,344 9029 | free((char *)(m[i] + 1)); 2026-05-29T13:47:21,345 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,345 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9030:9: warning: ‘void free(void*)’ called on pointer ‘’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,346 9030 | free((char *)(m + 1)); 2026-05-29T13:47:21,346 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,347 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp: In function ‘void step1(int, int, int, int, int, int, int, int, int, int, int, int*, int*, int*, int*, int*, int*, int*, int*, int, double, _objective*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, _constraint*, double*, double*, _violation*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void*)’: 2026-05-29T13:47:21,347 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:7210:21: note: returned from ‘double** make_dm(int, int)’ 2026-05-29T13:47:21,348 7210 | adummy = make_dm(1, 1); 2026-05-29T13:47:21,348 | ~~~~~~~^~~~~~ 2026-05-29T13:47:21,348 In function ‘void free_dm(double**, int)’, 2026-05-29T13:47:21,349 inlined from ‘void di1(int, int, int, int, int, int, int, int, int, int, int, int, int*, int, _parameter*, double*, _objective*, double, double*, _constraint*, double*, double*, double*, double*, double**, double*, double)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:7146:12, 2026-05-29T13:47:21,349 inlined from ‘void dir(int, int, int, int, int, int, int, int, int, int, int, int, double*, double, double, double*, double*, double, double*, double*, int*, int*, int*, int*, int*, int*, _parameter*, double*, double*, _constraint*, _objective*, double*, double*, double*, double*, double*, double*, double**, double*, double*, double*, double*, double**, double**, double*, double*, _violation*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*))’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:6446:12: 2026-05-29T13:47:21,350 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9030:9: warning: ‘void free(void*)’ called on pointer ‘’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,350 9030 | free((char *)(m + 1)); 2026-05-29T13:47:21,351 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,351 In function ‘void di1(int, int, int, int, int, int, int, int, int, int, int, int, int*, int, _parameter*, double*, _objective*, double, double*, _constraint*, double*, double*, double*, double*, double**, double*, double)’, 2026-05-29T13:47:21,352 inlined from ‘void dir(int, int, int, int, int, int, int, int, int, int, int, int, double*, double, double, double*, double*, double, double*, double*, int*, int*, int*, int*, int*, int*, _parameter*, double*, double*, _constraint*, _objective*, double*, double*, double*, double*, double*, double*, double**, double*, double*, double*, double*, double**, double**, double*, double*, _violation*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*))’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:6446:12: 2026-05-29T13:47:21,352 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:7053:16: note: returned from ‘double** make_dm(int, int)’ 2026-05-29T13:47:21,353 7053 | a = make_dm(nrowa, nqpram); 2026-05-29T13:47:21,353 | ~~~~~~~^~~~~~~~~~~~~~~ 2026-05-29T13:47:21,354 In function ‘void free_dm(double**, int)’, 2026-05-29T13:47:21,354 inlined from ‘void di1(int, int, int, int, int, int, int, int, int, int, int, int, int*, int, _parameter*, double*, _objective*, double, double*, _constraint*, double*, double*, double*, double*, double**, double*, double)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:7146:12, 2026-05-29T13:47:21,355 inlined from ‘void dir(int, int, int, int, int, int, int, int, int, int, int, int, double*, double, double, double*, double*, double, double*, double*, int*, int*, int*, int*, int*, int*, _parameter*, double*, double*, _constraint*, _objective*, double*, double*, double*, double*, double*, double*, double**, double*, double*, double*, double*, double**, double**, double*, double*, _violation*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*))’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:6446:12: 2026-05-29T13:47:21,356 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9029:13: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*))’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,356 9029 | free((char *)(m[i] + 1)); 2026-05-29T13:47:21,356 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,357 In function ‘void free_dm(double**, int)’, 2026-05-29T13:47:21,357 inlined from ‘void initpt(int, int, int, int, int, int, int, _parameter*, _constraint*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*))’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5658:12, 2026-05-29T13:47:21,358 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4809:15: 2026-05-29T13:47:21,358 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9030:9: warning: ‘void free(void*)’ called on pointer ‘’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,358 9030 | free((char *)(m + 1)); 2026-05-29T13:47:21,359 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,359 In function ‘void initpt(int, int, int, int, int, int, int, _parameter*, _constraint*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*))’, 2026-05-29T13:47:21,360 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4809:15: 2026-05-29T13:47:21,360 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5587:16: note: returned from ‘double** make_dm(int, int)’ 2026-05-29T13:47:21,361 5587 | a = make_dm(nrowa, nparam); 2026-05-29T13:47:21,361 | ~~~~~~~^~~~~~~~~~~~~~~ 2026-05-29T13:47:21,362 In function ‘void free_dm(double**, int)’, 2026-05-29T13:47:21,362 inlined from ‘void initpt(int, int, int, int, int, int, int, _parameter*, _constraint*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*))’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5658:12, 2026-05-29T13:47:21,363 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4809:15: 2026-05-29T13:47:21,363 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9029:13: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*))’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,364 9029 | free((char *)(m[i] + 1)); 2026-05-29T13:47:21,364 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,365 In function ‘void free_dm(double**, int)’, 2026-05-29T13:47:21,365 inlined from ‘void initpt(int, int, int, int, int, int, int, _parameter*, _constraint*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*))’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5659:12, 2026-05-29T13:47:21,366 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4809:15: 2026-05-29T13:47:21,366 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9030:9: warning: ‘void free(void*)’ called on pointer ‘’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,366 9030 | free((char *)(m + 1)); 2026-05-29T13:47:21,367 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,367 In function ‘void initpt(int, int, int, int, int, int, int, _parameter*, _constraint*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*))’, 2026-05-29T13:47:21,368 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4809:15: 2026-05-29T13:47:21,368 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5586:19: note: returned from ‘double** make_dm(int, int)’ 2026-05-29T13:47:21,369 5586 | hess = make_dm(nparam, nparam); 2026-05-29T13:47:21,369 | ~~~~~~~^~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,370 In function ‘void free_iv(int*)’, 2026-05-29T13:47:21,370 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4811:16: 2026-05-29T13:47:21,371 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9007:9: warning: ‘void free(void*)’ called on pointer ‘iw’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,371 9007 | free((char *)(v + 1)); 2026-05-29T13:47:21,372 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,372 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp: In function ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’: 2026-05-29T13:47:21,373 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4213:10: note: declared here 2026-05-29T13:47:21,373 4213 | int *iw; 2026-05-29T13:47:21,373 | ^~ 2026-05-29T13:47:21,374 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,374 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4812:16: 2026-05-29T13:47:21,375 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘w’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,375 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,375 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,376 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp: In function ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’: 2026-05-29T13:47:21,376 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4214:9: note: declared here 2026-05-29T13:47:21,377 4214 | double *w; 2026-05-29T13:47:21,377 | ^ 2026-05-29T13:47:21,378 In function ‘void free_dm(double**, int)’, 2026-05-29T13:47:21,378 inlined from ‘void initpt(int, int, int, int, int, int, int, _parameter*, _constraint*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*))’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5659:12, 2026-05-29T13:47:21,379 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4809:15: 2026-05-29T13:47:21,379 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9029:13: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*))’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,380 9029 | free((char *)(m[i] + 1)); 2026-05-29T13:47:21,380 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,381 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,381 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5110:12, 2026-05-29T13:47:21,382 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4968:16: 2026-05-29T13:47:21,382 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::x’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,383 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,383 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,383 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,384 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5111:12, 2026-05-29T13:47:21,384 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4968:16: 2026-05-29T13:47:21,385 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bl’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,385 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,386 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,386 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,387 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5112:12, 2026-05-29T13:47:21,387 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4968:16: 2026-05-29T13:47:21,387 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bu’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,388 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,388 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,389 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,389 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5113:12, 2026-05-29T13:47:21,390 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4968:16: 2026-05-29T13:47:21,390 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::mult’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,391 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,392 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,392 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,392 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5118:16, 2026-05-29T13:47:21,393 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4968:16: 2026-05-29T13:47:21,393 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*) +40)’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,394 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,394 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,394 In function ‘void free_iv(int*)’, 2026-05-29T13:47:21,395 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5022:12: 2026-05-29T13:47:21,396 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:9007:9: warning: ‘void free(void*)’ called on pointer ‘iw’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-05-29T13:47:21,396 9007 | free((char *)(v + 1)); 2026-05-29T13:47:21,397 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,397 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp: In function ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’: 2026-05-29T13:47:21,398 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4213:10: note: declared here 2026-05-29T13:47:21,398 4213 | int *iw; 2026-05-29T13:47:21,398 | ^~ 2026-05-29T13:47:21,399 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,399 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5023:12: 2026-05-29T13:47:21,400 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘w’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,401 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,401 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,401 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp: In function ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’: 2026-05-29T13:47:21,402 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4214:9: note: declared here 2026-05-29T13:47:21,402 4214 | double *w; 2026-05-29T13:47:21,403 | ^ 2026-05-29T13:47:21,403 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,404 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5030:20: 2026-05-29T13:47:21,404 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*) +48)’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,404 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,405 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,405 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,406 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5111:12, 2026-05-29T13:47:21,406 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5043:20: 2026-05-29T13:47:21,407 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bl’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,407 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,408 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,408 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,409 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5112:12, 2026-05-29T13:47:21,409 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5043:20: 2026-05-29T13:47:21,410 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bu’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,410 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,411 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,411 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,412 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5113:12, 2026-05-29T13:47:21,412 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5043:20: 2026-05-29T13:47:21,413 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::mult’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,413 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,413 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,414 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,414 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5118:16, 2026-05-29T13:47:21,415 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5043:20: 2026-05-29T13:47:21,415 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*) +40)’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,416 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,416 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,417 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,417 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5047:24: 2026-05-29T13:47:21,418 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*) +48)’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,418 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,419 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,420 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,420 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5111:12, 2026-05-29T13:47:21,420 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5058:16: 2026-05-29T13:47:21,421 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bl’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,421 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,422 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,422 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,423 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5112:12, 2026-05-29T13:47:21,423 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5058:16: 2026-05-29T13:47:21,423 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bu’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,424 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,424 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,425 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,426 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5113:12, 2026-05-29T13:47:21,426 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5058:16: 2026-05-29T13:47:21,427 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::mult’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,427 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,428 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,428 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,428 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5118:16, 2026-05-29T13:47:21,429 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5058:16: 2026-05-29T13:47:21,430 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*) +40)’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,431 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,431 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,431 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,432 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5060:20: 2026-05-29T13:47:21,432 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*) +48)’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,433 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,433 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,434 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,434 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5080:16: 2026-05-29T13:47:21,434 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*) +48)’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,435 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,435 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,436 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,436 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5111:12, 2026-05-29T13:47:21,437 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5086:12: 2026-05-29T13:47:21,437 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bl’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,438 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,439 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,439 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,440 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5112:12, 2026-05-29T13:47:21,440 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5086:12: 2026-05-29T13:47:21,441 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bu’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,441 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,441 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,442 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,442 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5113:12, 2026-05-29T13:47:21,443 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5086:12: 2026-05-29T13:47:21,443 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::mult’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,444 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,444 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,444 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,445 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5118:16, 2026-05-29T13:47:21,446 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5086:12: 2026-05-29T13:47:21,446 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*) +40)’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,446 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,447 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,448 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,448 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5111:12, 2026-05-29T13:47:21,449 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5043:20: 2026-05-29T13:47:21,449 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bl’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,450 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,450 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,451 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,451 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5112:12, 2026-05-29T13:47:21,451 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5043:20: 2026-05-29T13:47:21,452 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bu’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,452 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,453 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,453 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,454 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5113:12, 2026-05-29T13:47:21,454 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5043:20: 2026-05-29T13:47:21,454 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::mult’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,455 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,455 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,456 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,456 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5110:12, 2026-05-29T13:47:21,457 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4968:16: 2026-05-29T13:47:21,458 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::x’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,458 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,459 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,459 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,459 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5111:12, 2026-05-29T13:47:21,460 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4968:16: 2026-05-29T13:47:21,460 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bl’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,461 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,461 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,462 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,462 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5112:12, 2026-05-29T13:47:21,462 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4968:16: 2026-05-29T13:47:21,463 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::bu’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,463 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,464 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,464 In function ‘void free_dv(double*)’, 2026-05-29T13:47:21,465 inlined from ‘void dealloc(int, int, double*, int*, int*, _constraint*, _parameter*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:5113:12, 2026-05-29T13:47:21,465 inlined from ‘void cfsqp(int, int, int, int, int, int, int, int, int, int*, int, int, int, int*, double, double, double, double, double*, double*, double*, double*, double*, double*, void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void (*)(int, int, double*, double*, void (*)(int, int, double*, double*, void*), void*), void*)’ at /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:4968:16: 2026-05-29T13:47:21,466 /tmp/tmp1covsx7v/build/_deps/xmipp_core_sources-src/core/numerical_recipes.cpp:8991:9: warning: ‘void free(void*)’ called on pointer ‘_param._parameter::mult’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-05-29T13:47:21,466 8991 | free((char *)(v + 1)); 2026-05-29T13:47:21,467 | ~~~~^~~~~~~~~~~~~~~~~ 2026-05-29T13:47:21,467 ninja: build stopped: subcommand failed. 2026-05-29T13:47:26,781 *** CMake build failed 2026-05-29T13:47:26,890 ERROR: [present-rich] Building wheel for pyxmipp3 (pyproject.toml) exited with 1 2026-05-29T13:47:26,903 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpujcxary4[/] 2026-05-29T13:47:26,904 [bold magenta]cwd[/]: /tmp/pip-wheel-0ojvt9ro/pyxmipp3_d0f242eb90aa4a01b44ac04a0fab8958 2026-05-29T13:47:26,904 Building wheel for pyxmipp3 (pyproject.toml): finished with status 'error' 2026-05-29T13:47:26,906 ERROR: Failed building wheel for pyxmipp3 2026-05-29T13:47:26,909 Failed to build pyxmipp3 2026-05-29T13:47:26,910 ERROR: Failed to build one or more wheels 2026-05-29T13:47:26,911 Exception information: 2026-05-29T13:47:26,911 Traceback (most recent call last): 2026-05-29T13:47:26,911 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2026-05-29T13:47:26,911 status = run_func(*args) 2026-05-29T13:47:26,911 ^^^^^^^^^^^^^^^ 2026-05-29T13:47:26,911 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2026-05-29T13:47:26,911 return func(self, options, args) 2026-05-29T13:47:26,911 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-05-29T13:47:26,911 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2026-05-29T13:47:26,911 raise CommandError("Failed to build one or more wheels") 2026-05-29T13:47:26,911 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2026-05-29T13:47:26,916 Removed build tracker: '/tmp/pip-build-tracker-xrj2kvi5'