2026-06-01T22:16:55,932 Created temporary directory: /tmp/pip-ephem-wheel-cache-217z1xhp
2026-06-01T22:16:55,934 Created temporary directory: /tmp/pip-build-tracker-3cr9_gx7
2026-06-01T22:16:55,934 Initialized build tracking at /tmp/pip-build-tracker-3cr9_gx7
2026-06-01T22:16:55,935 Created build tracker: /tmp/pip-build-tracker-3cr9_gx7
2026-06-01T22:16:55,935 Entered build tracker: /tmp/pip-build-tracker-3cr9_gx7
2026-06-01T22:16:55,936 Created temporary directory: /tmp/pip-wheel-vowptatx
2026-06-01T22:16:55,939 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-01T22:16:55,941 Created temporary directory: /tmp/pip-ephem-wheel-cache-sxr2dl_w
2026-06-01T22:16:55,963 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-01T22:16:55,966 2 location(s) to search for versions of scikit-bio:
2026-06-01T22:16:55,966 * https://pypi.org/simple/scikit-bio/
2026-06-01T22:16:55,966 * https://www.piwheels.org/simple/scikit-bio/
2026-06-01T22:16:55,967 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/
2026-06-01T22:16:55,968 Getting page https://pypi.org/simple/scikit-bio/
2026-06-01T22:16:55,969 Found index url https://pypi.org/simple
2026-06-01T22:16:56,122 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json
2026-06-01T22:16:56,153   Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0
2026-06-01T22:16:56,153   Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1
2026-06-01T22:16:56,154   Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2
2026-06-01T22:16:56,155   Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3
2026-06-01T22:16:56,156   Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4
2026-06-01T22:16:56,157   Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5
2026-06-01T22:16:56,157   Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0
2026-06-01T22:16:56,158   Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.1
2026-06-01T22:16:56,159   Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.2
2026-06-01T22:16:56,160   Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.3
2026-06-01T22:16:56,160   Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.0
2026-06-01T22:16:56,161   Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.1
2026-06-01T22:16:56,162   Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.2
2026-06-01T22:16:56,163   Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip (from https://pypi.org/simple/scikit-bio/), version: 0.5.0
2026-06-01T22:16:56,163   Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.1
2026-06-01T22:16:56,164   Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2
2026-06-01T22:16:56,164   Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3
2026-06-01T22:16:56,165   Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4
2026-06-01T22:16:56,166   Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5
2026-06-01T22:16:56,166   Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6
2026-06-01T22:16:56,167   Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7
2026-06-01T22:16:56,168   Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8
2026-06-01T22:16:56,169   Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9
2026-06-01T22:16:56,169   Found link https://files.pythonhosted.org/packages/9d/77/531cf69c99cb398c5abf8545259b88ee256bfdb72e5972bcfdbcb9942751/scikit-bio-0.6.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.0
2026-06-01T22:16:56,170   Found link https://files.pythonhosted.org/packages/12/6b/1a01f3df88503d9a11916972f0b0c2aed13d516f159336b4bdcfcd04098a/scikit-bio-0.6.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.1
2026-06-01T22:16:56,171   Found link https://files.pythonhosted.org/packages/29/28/07326aa931c67d491d3053e2875b6c8f2904e661d9ab7c2840c3ae6b3780/scikit-bio-0.6.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.2
2026-06-01T22:16:56,172   Found link https://files.pythonhosted.org/packages/65/59/31e499edc0d045acab799b7117130e9c9de22371be57ac311f2f0b235dc4/scikit-bio-0.6.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.3
2026-06-01T22:16:56,172   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/59/8b/f90ee0325c7f59573bdf8d4a5a5717ca710f067a081fd46f3768600a200d/scikit_bio-0.7.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,173   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/57/c6/0864476e63935459eb4d474f210e70ca1b0aa9689bb1beccbeae582587ce/scikit_bio-0.7.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,174   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/ca/087675f3fd6608142be8c53e6875a1a730e0fa1250a85421677570445839/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,174   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c8/69/da203001d9a0d4f2dc14426617e5eed76c9ff059f6c2a94023bf48e204cb/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,175   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/45/97/3b928b1f075a6033326244e125f0e3a518fe75c17278359d1835ca4ccb24/scikit_bio-0.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,176   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3d/66/5f238ff8fa25080d5baf82287297bfd1e6dbeab45ef3ff1b0f6e1a7c017e/scikit_bio-0.7.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,176   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f9/8b/8ef6e40a818067bdaf57fa779eadbc8ef73f333dbd50fb09daeae13de1f2/scikit_bio-0.7.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,177   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f0/66/6cb6e9ba1e67f65a27b34fcd33b457cb0fea73f93dc184ea1bf38562f012/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,177   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/27/e359f131018cf988f1e4f5e7380db7db43ba4202ffc9ba9e8f6cfb1988f5/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,178   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/db/99/6b0ce81f81e2cfe06c899455b149e7f8393cd3ba9a8905efe18c36894420/scikit_bio-0.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,178   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/43/9b/bf339d439568a4fa0ab6e7e545c4487b1cf86e6245f98be0d922f4677ddc/scikit_bio-0.7.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,179   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1d/e9/7a5dd2e04bbd361907f5a1942fa4b6aeecfa453801f4c047c55b51036df2/scikit_bio-0.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,180   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/19/4b/b63123cf09c3375fa90cbfc02febf32cc20429a49c03d71f37febed7c52d/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,180   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f5/02/b178ca48305a230e080732dd02233e0824b1a9b41b273acf2444de116be2/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,181   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/5f/a8/199cafe05bb77bf274f0a3db8f5199f4b2966db37589f9e5ec6a212c0b9c/scikit_bio-0.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,182   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d4/31/b943fcf7d4579b4751002ad9a48e62e9f0c7db542dd440f7e3e82f50f58b/scikit_bio-0.7.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,182   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e7/af/5f3452f0dce0f0a3c7ccb9f067e410b50a8d188c4fb56426f8785317333d/scikit_bio-0.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,183   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7d/20/ef1d2a8accb946cc31b5b987a46d197f69d1e89bab76b5e9cb4235a355f9/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,183   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1c/46/3f05eedb58e13c21f5ab7496e9735da2f008aa66038b268ea46138a3e48d/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,184   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/40/e9/2f7d72ef933e9328b929295ada98ad2c5fbdc5b3c6bd2f4d886f14d4f90a/scikit_bio-0.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,184   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b5/fa/3a7770c445111c6b957aba701887f22506faef8145965a6b9d2816cfd896/scikit_bio-0.7.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,185   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4e/07/e2a29ccbb31208c98ff2c7b61b00614885f781474891ebf249d85495e238/scikit_bio-0.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,186   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/89/15/829f7da8e5083f4d2e3dd1ef24faa6b32da2bf492547bd6d385e92fda127/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,186   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4a/34/687f9e4dc73e39a56277e2aa900577fccb3c99ef28a5acc5fc258028e2ac/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,187   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6c/a5/75fd40c8bf70836216fffe57bdd80c78959d5cc21c23927ada892b246f3d/scikit_bio-0.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,188   Found link https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9), version: 0.7.0
2026-06-01T22:16:56,189   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6d/04/6e6a1b10435102dfd1a8e30f474c54653673c8a91474e329901b0267d3f0/scikit_bio-0.7.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,189   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d2/7c/f284d2057fd0e7263acbb8063cac485f8035e647f404b847974a83409351/scikit_bio-0.7.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,190   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/0a/6d/dbfc1d74fc7f4f928e7e3d2ddef5ef4496452b199306a2cfc489e80e7d3b/scikit_bio-0.7.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,191   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d6/34/d74ffd08dc4260b2bcb79e0cd9e36be83991291ee9478fd7ffd766b1cde5/scikit_bio-0.7.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,192   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/8d/8b/c397b7b6dad883b9f90ce0a43d218bea5c3414e432ed66c254b08647aefc/scikit_bio-0.7.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,192   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/23/3a/e2be5b83a9505e8dd443325614f27fb63f9c2f8839c09032860cc9998853/scikit_bio-0.7.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,193   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/46/44/67643050e6e9f7ca7bcdab88dd3cdf1d5720cc542636a50d16d6606f0cad/scikit_bio-0.7.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,193   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/07/cb/d38547b994c3728088ef20797ce9a51cf6466f06d92fba4e59580a5c91b5/scikit_bio-0.7.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,194   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/fb/b0/30cbcfa69255a1f6b574d2e0d7b3e772cb6ee5e8d2c3ffa13b5a2b64236b/scikit_bio-0.7.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,194   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/62/ad/c82c0a0c51289372aa16c09f3188f245beff215171c027476d6fc314be8f/scikit_bio-0.7.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,195   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c7/c8/7e5ce788c455803898d338dad19c76e4eab54a16428386a4d104583ec8a1/scikit_bio-0.7.1-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,195   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/a4/b8/568936a7f6e0150492a274e883f20eda972bbda6a9d72b9f06846f3ad4d2/scikit_bio-0.7.1-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,196   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1a/97/111eee5c5b9dceca0923d20bde93170a2b247330b821d8d924f4b858b9a2/scikit_bio-0.7.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,197   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/06/35/8c0b9fc742d0c6cc67aa677386c2da77d9aecf2ac42879b27ac8e6874ae3/scikit_bio-0.7.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,197   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/20/59/a328599e30b45e202199d3868726dc3f64f230d8e904a137f14e9d8237d9/scikit_bio-0.7.1-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,198   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/bd/81/a5ca29616d9ae72a294dbcae411cc694fde2053e388614ea80a3ba8f39fc/scikit_bio-0.7.1-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,199   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/9d/ec/263db2f193d3e07be38a17eab43d5dfb963141117ab87f35fad3a460d5de/scikit_bio-0.7.1-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,199   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/05/a9/787f835a441e16b590c4f6177552ab657d0d7b2d9ee21079d0df75271918/scikit_bio-0.7.1-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,200   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/44/3f/87938613a40e69ed091e369d4c942e5b9f201026e293c84f55aef12d0ff4/scikit_bio-0.7.1-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,200   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/b6/13f3c264b7eaa782fafdba39d21f70345264aff886324e33f61b1c25678a/scikit_bio-0.7.1-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,201   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/cc/d0/1cca312e7ad0ee610aab765457ee2926a077961c14bed0142f58cda00989/scikit_bio-0.7.1-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,202   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/51/4b/c6ff1b45e5befcb5d2c52540a23520cdb544e0a8f976bf8aed482e3dfd0f/scikit_bio-0.7.1-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,202   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/29/c8/55bc1539199ddb3c24b0867c6c59f713e3741a0928452c51932094edbf0f/scikit_bio-0.7.1-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,203   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1a/bc/481bbbae352077fc1f05444e029aa08cce82e6e4e6ef10f3a834f42ae8c2/scikit_bio-0.7.1-cp314-cp314-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,203   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4e/9c/dc7d3d75903542df0ca45f35671dbcd78f6b1b3b40ae81fae53e0cdcb56d/scikit_bio-0.7.1-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,204   Found link https://files.pythonhosted.org/packages/f5/16/7b8575e9e28a091c4201af990e097c7d48bdb99659b464bac7420ecdff94/scikit_bio-0.7.1.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10), version: 0.7.1
2026-06-01T22:16:56,205   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/91/38/5fda6a940bb367ca083acaf393cf4f8d4ef9b9fee59a543db7e84af4dfcc/scikit_bio-0.7.1.post1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,206   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/21/c4/43dc66de1d6699014238928eae7d183e27e5f0838dbaa917711cae95526b/scikit_bio-0.7.1.post1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,206   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b1/e7/c0c3a2b93ecc8a076ec0b526a8596b14d8c97d9d669968ba27e0eb2738a9/scikit_bio-0.7.1.post1-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,207   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ce/84/618d9eefeb933f0cb080e4d0ce6b561002f7967057a24e52278db067282f/scikit_bio-0.7.1.post1-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,208   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/28/44/570eb1a2bda69f03255b4129521ba4e5e045b590855fcd65dec269ef8ee4/scikit_bio-0.7.1.post1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,208   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e6/91/eb2a2eed239612ec22d69f948cd02a90a86ec0a3eb0ddf468c66e54a8609/scikit_bio-0.7.1.post1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,209   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/74/c2/de147eef13bfcc19cb086061ef52a6dcb33613b535c5b8b903207a18b1f2/scikit_bio-0.7.1.post1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,209   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/72/2b/68f1ef336a4285b5898a2910d65ebc3f329035228d0fdabce0f1775402b4/scikit_bio-0.7.1.post1-cp311-cp311-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,210   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/5c/35/b100d2e6d5e0fd4de4af4c3be9e70c291702afb314b549374331df4f99e4/scikit_bio-0.7.1.post1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,211   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/5c/60/9896f3378ab768af4eb56749bca7eb229be1ef76f6417506fb2437330ed7/scikit_bio-0.7.1.post1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,211   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/9a/9e/1709b0eb124cddba864b855df6c428e96c224d99ffb5d008329a5d8caec4/scikit_bio-0.7.1.post1-cp311-cp311-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,212   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ac/4e/df25894303407646477823d37409b88e9589a64432bcfd97b5c69e290f01/scikit_bio-0.7.1.post1-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,212   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/a9/e4/f35635cdf167a0335cae98d6b89da08de4f89c80f740304ba642030761ad/scikit_bio-0.7.1.post1-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,213   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/cc/5a/25e6fa4db4e0cdbaecf395af06f8d95830ad1e57b0daf176bebe1c957ad6/scikit_bio-0.7.1.post1-cp312-cp312-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,214   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/78/fd/45a25d9c4ff917582f951f08c2f06ab719802f3d4f9a6dcb4fc291c763f7/scikit_bio-0.7.1.post1-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,214   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/cd/cea3b6fbe18cd94226e38196e71b4bdb57b187722ade8df63b38a0c15560/scikit_bio-0.7.1.post1-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,215   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d9/61/8dcdd863634f77db5dac566cdd4fe09a01786e42f0ccf06d32e91f68f5a8/scikit_bio-0.7.1.post1-cp312-cp312-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,216   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/fd/96/a8c8bd5cddbc0159f67b8efe399b4f786887608292edd90e57b669dfb58c/scikit_bio-0.7.1.post1-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,216   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/8b/e3/679a58a84b5c863b27ba130f3691083f6bb71c3f3142a20a1ebce5f3988f/scikit_bio-0.7.1.post1-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,217   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e7/65/c776d8d32e69d2074bc2eb8c46c7807e1ac572548da9fe950eac249ede4f/scikit_bio-0.7.1.post1-cp313-cp313-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,217   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f4/e0/fc497c545850e2e3683e8a30139dccfff0616f02658dfbd6b5f92bf2499d/scikit_bio-0.7.1.post1-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,218   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/71/5c/fb855a6f767c88c82bb28ec125457ea8d654b3187aea49bd2696df923513/scikit_bio-0.7.1.post1-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,218   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/84/3d/f7549b21f314b2a23f5a6148e0a17c88d8170bd1599ae8c735f492a01ce5/scikit_bio-0.7.1.post1-cp313-cp313-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,219   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/29/7f/11d1c5e10001870e42f91e0236d6bb3fabd1bd0f6d43eb149fe74596e951/scikit_bio-0.7.1.post1-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,220   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6b/73/60707444c38f8a791046d16c0f54dc4fa98e4d34c01e38e306799a2f0754/scikit_bio-0.7.1.post1-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,220   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ee/e4/5a06cce37472df5503192435637a51ee3a658e4ca7a7c2671f0a4f32737d/scikit_bio-0.7.1.post1-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,221   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d8/6d/5700bb155429a6aa74ad8ef94a905f52c901fd6de2c7d03b99222e77f1bf/scikit_bio-0.7.1.post1-cp314-cp314-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,221   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f4/39/05c6f52c53f16b00003099db1ad9b51f037a90382fe7e31c96376896efdc/scikit_bio-0.7.1.post1-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,222   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ff/95/ff64d260b2dd308338842287b0a165eb3b97e123ead5ff5206862475f812/scikit_bio-0.7.1.post1-cp314-cp314-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,223   Found link https://files.pythonhosted.org/packages/08/d2/7c8d097db3f158cf2f346cc2586943ee3d85263177ddacc7d663d9f95131/scikit_bio-0.7.1.post1.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10), version: 0.7.1.post1
2026-06-01T22:16:56,224   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b6/63/ca3236b8c4b7fe638ada64f76a2853343a4296ada72ac2024f3939bd882d/scikit_bio-0.7.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,224   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/fe/1a/de76d17868d23b8e88342d307425c53ccefd2548b3bb974de0bdab89262f/scikit_bio-0.7.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,225   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/30/c4/5a2dfc7439c00b4f0b50f4c1abb7557128e11883e1b59538744cf49283e3/scikit_bio-0.7.2-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,225   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1e/62/3ceef25e854227dcda3dff4df6841a9759bb35f79aee9f8c6b441fb45f57/scikit_bio-0.7.2-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,226   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/8d/81/ec37fce9fdba200bfdbd5782913ec658e83d11b1127557aaec4a0cdd30f7/scikit_bio-0.7.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,226   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/36/20/8162865e96b3195ce721379892dc4ec5f81ee4c2c29a68571b7e6a05957c/scikit_bio-0.7.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,227   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/fd/6c/7af46e94698bfcdfbd4eabb261e70a8cb2eb69ebed27804e30693082db5a/scikit_bio-0.7.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,228   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4b/35/88e97e2d96106be663d1ff10e1c74869bf7972510daa399a8d4c644ab530/scikit_bio-0.7.2-cp311-cp311-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,228   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/de/51/0fa75940de0fe3e0d7a34828831efb6cb3d673c2b23d795da5c74b5cdc7f/scikit_bio-0.7.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,229   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/db/63/d3010fdc1486898511b05c9250c96e87a28bb3e584e05c0e0f6e9b4766ed/scikit_bio-0.7.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,230   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/83/4d/9a420e15f1554cb983a6d7bde19db74247a29b4bc2f52eb28e9e698e28b5/scikit_bio-0.7.2-cp311-cp311-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,230   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4a/3e/533150782121da572c422c7659ead6688deea251900af4072fe8e73628a2/scikit_bio-0.7.2-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,231   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e5/82/068e77d31093a469a44b58a74683c2da7d62f244ce3580bcf09aaeb3f3bb/scikit_bio-0.7.2-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,231   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4c/69/74b3b3fef3cec61db3d8467be6e27d079cc8542a700e918c50fa7520c091/scikit_bio-0.7.2-cp312-cp312-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,232   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6e/68/7a70e65189ea9b4524fe98578ecd38d8c772c191a600a03cb2da5368267f/scikit_bio-0.7.2-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,232   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f4/7e/ecd5135713cd41ac4ddfebc5f6b381d8075322617f850e92f892d79b31c5/scikit_bio-0.7.2-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,233   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/14/fa/5fca7b5c595f4bc2e38f459917d334e245f5bb9ae694ac7396790898605b/scikit_bio-0.7.2-cp312-cp312-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,233   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3c/53/9c3dc4b736f945be852ae43474a901c06763bba3a5cf52f2adbfcba42bff/scikit_bio-0.7.2-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,234   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7f/0e/25373b3e62fee797f517edde44d69e7fe99ff8acf6a1faf05839885842c1/scikit_bio-0.7.2-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,235   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/55/00/08d301ee1f091768928e2ec0371aefb4b67f70f718f93e23d145a23353a1/scikit_bio-0.7.2-cp313-cp313-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,235   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6a/d2/398ae8185cd8fd59d099128fbb8481f58b596dd6ab29d5dcd14023561e7f/scikit_bio-0.7.2-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,236   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e6/20/3c9cbcbe91f1bd881d441da82570857bf302a3987f065ba69b6de03e61fc/scikit_bio-0.7.2-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,237   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d7/e4/628c154fbf83855f9157411bcb80de0b65902ef942318643ff16746fb5aa/scikit_bio-0.7.2-cp313-cp313-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,237   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/62/87/ffc5384a6793ed20f0fd550c6c92cac4eec85763d51d5a1d0e6bb76e37c6/scikit_bio-0.7.2-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,238   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/05/c6/7b4de57d21e1587df1a9b8a599bb09ed36135a9cbfb57bcce1e695c15c20/scikit_bio-0.7.2-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,239   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4d/f7/94fed4818f0b616845d89be2ac7149d5afe3ec61df15e77f04811a2b84df/scikit_bio-0.7.2-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,239   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/da/be/4eeea67c506c563e59e2e472563d9ddbd8bde8ef8c77e0fe326f161c6d36/scikit_bio-0.7.2-cp314-cp314-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,240   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/27/c2/01b9072ffac75312902b6007c546c5713fe1084bde27a7479c32bce542dc/scikit_bio-0.7.2-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,240   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/46/23/c95e4d0a65fbbf859e40cce4f221291d1d3ddb1ebe03df1b5c0e0c0ed642/scikit_bio-0.7.2-cp314-cp314-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,241   Found link https://files.pythonhosted.org/packages/5a/6f/6bb9eda0faccafede38979b79d161f81bb3cbf56ec81dcd7c26fbdadbc4b/scikit_bio-0.7.2.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10), version: 0.7.2
2026-06-01T22:16:56,242   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/93/07/85774dca025670d0274fc5a89ad63bb771ecb3baa16c1427d8bb5121619b/scikit_bio-0.7.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,243   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b8/11/433b4c05e1f30abe344f7ea8122ac3548cc64d476fec428a13637221f437/scikit_bio-0.7.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,244   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b8/59/5e496cf4eef8a8a1b54e7663e05c1314e9c54e3021bf42f6a381b21e8363/scikit_bio-0.7.3-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,244   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/24/7f/a31d25480e7114179bc8bbb12565d438783636f8b01a2933c8d93b05d935/scikit_bio-0.7.3-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,245   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/b7/7c06577ff04946cc80c346cdd2b5315ab4143e3464c2b3d802f251d0ea49/scikit_bio-0.7.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,246   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/9a/8e/7637ccfec1b1487dd762a4595c272513d99684eb4f30a242ce84374d38c7/scikit_bio-0.7.3-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,246   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3f/c4/3566190ad61087b663f1042fab4508a0c5731ee6f91b4fd33f3a40f861ac/scikit_bio-0.7.3-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,247   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3b/e4/7d1717705febf54a3a793cbe10040d2fce00dc125154dba36e03eb6c0e36/scikit_bio-0.7.3-cp311-cp311-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,248   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/0a/c9/0eb37549c164f447a77ff0f85848ab7ffb35f7796afbe073aabf451c7c36/scikit_bio-0.7.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,248   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/23/bf/17840752e3aa2d07baa0b89ac53bb5147ae1979ce54a1a473cd3443efec6/scikit_bio-0.7.3-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,249   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7b/dd/80ef17b3f2112d647bbbc279ef66563f7f94a58675f4eb961243c3218f4f/scikit_bio-0.7.3-cp311-cp311-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,249   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b6/58/1d14366965494f9bf9d63f5e36caefcf1ad0b047a395128cbcec9dd9f74f/scikit_bio-0.7.3-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,250   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/eb/9c/cd193442cd9f4b336532637cff55580669ad62cc0c1c4b2f7c0e5a43ba98/scikit_bio-0.7.3-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,250   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1b/57/8261c53785d6681a291fab7153af97fb33cdd4f0aeb189569496ed248da6/scikit_bio-0.7.3-cp312-cp312-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,251   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c3/a2/57977ccff57c9706a6deb32ce4c938560f667c7613de6a82fddb2b9af3fb/scikit_bio-0.7.3-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,252   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4f/ca/5f5752316f836903f9d45c67afcaa839924bdf90c65121aa5a6cb3c6ac0a/scikit_bio-0.7.3-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,252   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/fc/25/ddf8b8f4ea09c3a3224c0f12fc4ade6c119cea929635db8832774df4310c/scikit_bio-0.7.3-cp312-cp312-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,253   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/52/4d/9ed6b34e5e4de1b4056cadbaa3a30cd7a96756fa20bfe7202138366dfce8/scikit_bio-0.7.3-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,254   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1c/55/932b40255691bd638b4111e0e103459136f646e33d0f5db65d0e2a0a2cc5/scikit_bio-0.7.3-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,254   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d0/f7/396e184e67d7d9ca8ba1ae9a6599acb5aadbf223372f86e2332826e1c21b/scikit_bio-0.7.3-cp313-cp313-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,255   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3d/a1/6baa127ecec8a291d1cd4503b18abdc7dacf16e5b1ec98eb2a42e9317a76/scikit_bio-0.7.3-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,256   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/62/526eeb742106bf665f0bb3d83d378a6f646cc5683b6da0563991efe3c427/scikit_bio-0.7.3-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,256   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/48/a9/f7a19f9b8e7da5536c8ce49a0b2b619f4b58411368ef8891a50f0dc81ec2/scikit_bio-0.7.3-cp313-cp313-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,257   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/54/e5/6f4248340d3bb195c7bef34970ee8813a6c6f7bd22e86516ed65936988a9/scikit_bio-0.7.3-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,257   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7d/5c/5af76cbdaca620cd226ade74c66b622d57c8e7a4b32e5b35ae645d5841da/scikit_bio-0.7.3-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,258   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/97/b2/147988bd1af4d7df0dfc50d429eafbe7950c44be85107dec2ef6c3111630/scikit_bio-0.7.3-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,258   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/f7/fc0517930d59d7eca6d3f8ff5c2d770b3b3f312f8148c385c07c6ff79b19/scikit_bio-0.7.3-cp314-cp314-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,259   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/fc/b4/4d312e2dd3e1f958425e09f2e8686b445fdd1e67c9e21b5d404dbca92b57/scikit_bio-0.7.3-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,260   Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/01/03/dbe2e0834b509b03afcd26c999991ff6e0ea2a3fd394d6f7c7512ca35939/scikit_bio-0.7.3-cp314-cp314-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,261   Found link https://files.pythonhosted.org/packages/f1/b7/9a349408f2edb09be83a2d105a0c1ecbfcb52d794abfeb601a12a3cc5093/scikit_bio-0.7.3.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10), version: 0.7.3
2026-06-01T22:16:56,261 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/
2026-06-01T22:16:56,262 Getting page https://www.piwheels.org/simple/scikit-bio/
2026-06-01T22:16:56,264 Found index url https://www.piwheels.org/simple
2026-06-01T22:16:56,444 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html
2026-06-01T22:16:56,458   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.1.post1-cp311-cp311-linux_armv6l.whl#sha256=42f804459495d2d832f39e60c832cc00a617769395443560d2aaee427f6f6b99 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,459   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.1.post1-cp311-cp311-linux_armv7l.whl#sha256=42f804459495d2d832f39e60c832cc00a617769395443560d2aaee427f6f6b99 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,459   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.1.post1-cp313-cp313-linux_armv6l.whl#sha256=9dfa39ee20f38838513fd2dc4aafe7594e96c0bf67b14a401ee89e7e64407f5e (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,460   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.1.post1-cp313-cp313-linux_armv7l.whl#sha256=9dfa39ee20f38838513fd2dc4aafe7594e96c0bf67b14a401ee89e7e64407f5e (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,460   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.1-cp313-cp313-linux_armv6l.whl#sha256=e59fc5a6085994cdb9f10ae8cca98a7791bf27c75ce201153762d75083cd0261 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,461   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.1-cp313-cp313-linux_armv7l.whl#sha256=e59fc5a6085994cdb9f10ae8cca98a7791bf27c75ce201153762d75083cd0261 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.10)
2026-06-01T22:16:56,461   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.0-cp39-cp39-linux_armv6l.whl#sha256=0cea0da1a2ed84ffd67385927e252038821660b4c491a6dae9d0d4f859058e95 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,462   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.0-cp39-cp39-linux_armv7l.whl#sha256=0cea0da1a2ed84ffd67385927e252038821660b4c491a6dae9d0d4f859058e95 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,463   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.0-cp311-cp311-linux_armv6l.whl#sha256=2507236b76ff2093cede8127ea000205cd62fe6f26c6f45e30d8c05640fb3254 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,463   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.0-cp311-cp311-linux_armv7l.whl#sha256=2507236b76ff2093cede8127ea000205cd62fe6f26c6f45e30d8c05640fb3254 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.9)
2026-06-01T22:16:56,464   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv6l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,464   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv7l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,465   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv6l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,466   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv7l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,466   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp313-cp313-linux_armv6l.whl#sha256=ac375c5fa6ccb09fe01c5811f3c5fa5a79019ba07cf1fe226ba166fd219bcc68 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,467   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp313-cp313-linux_armv7l.whl#sha256=ac375c5fa6ccb09fe01c5811f3c5fa5a79019ba07cf1fe226ba166fd219bcc68 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,467   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.2-cp39-cp39-linux_armv6l.whl#sha256=c11cd14b1aa68524f23fa412af6d5139f3023ac63212057c53649ce6a63da7b8 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,468   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.2-cp39-cp39-linux_armv7l.whl#sha256=c11cd14b1aa68524f23fa412af6d5139f3023ac63212057c53649ce6a63da7b8 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,468   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.2-cp313-cp313-linux_armv6l.whl#sha256=dfa1a1651ab7302bec2b83cd5529715837d36327656c6f42a3ab6a4e103275c1 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,469   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.2-cp313-cp313-linux_armv7l.whl#sha256=dfa1a1651ab7302bec2b83cd5529715837d36327656c6f42a3ab6a4e103275c1 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,469   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp311-cp311-linux_armv6l.whl#sha256=7657b22d76cf0c3a508f91d921cbfc5431049f4477456d8b26c9a24a9ebb7190 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,469   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp311-cp311-linux_armv7l.whl#sha256=7657b22d76cf0c3a508f91d921cbfc5431049f4477456d8b26c9a24a9ebb7190 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,470   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp37-cp37m-linux_armv6l.whl#sha256=2dfb82a5726354b8f83f298206e3c08373a5c7502bcd2d68eba605d3d7a63398 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,471   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=2dfb82a5726354b8f83f298206e3c08373a5c7502bcd2d68eba605d3d7a63398 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,471   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,472   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,472   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv6l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,473   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv7l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,473   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,474   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,475   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,475   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,476   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp313-cp313-linux_armv6l.whl#sha256=18b56025e3a7827cede6dff75025f3d75f4e757fb44bc2ffddd440ecab847dce (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,476   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp313-cp313-linux_armv7l.whl#sha256=18b56025e3a7827cede6dff75025f3d75f4e757fb44bc2ffddd440ecab847dce (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,477   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,477   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,478   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,478   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,479   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv6l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,480   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv7l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,480   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,481   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,481   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,482   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,482   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,483   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,483   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,484   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,484   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,485   Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/)
2026-06-01T22:16:56,485 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/
2026-06-01T22:16:56,486 Skipping link: not a file: https://pypi.org/simple/scikit-bio/
2026-06-01T22:16:56,509 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates
2026-06-01T22:16:56,527 Collecting scikit-bio==0.7.3
2026-06-01T22:16:56,529   Created temporary directory: /tmp/pip-unpack-uiseesdb
2026-06-01T22:16:56,759   Downloading scikit_bio-0.7.3.tar.gz (5.8 MB)
2026-06-01T22:16:59,659   Added scikit-bio==0.7.3 from https://files.pythonhosted.org/packages/f1/b7/9a349408f2edb09be83a2d105a0c1ecbfcb52d794abfeb601a12a3cc5093/scikit_bio-0.7.3.tar.gz to build tracker '/tmp/pip-build-tracker-3cr9_gx7'
2026-06-01T22:16:59,673   Created temporary directory: /tmp/pip-build-env-iy1lbtjw
2026-06-01T22:16:59,679   Installing build dependencies: started
2026-06-01T22:16:59,681   Running command pip subprocess to install build dependencies
2026-06-01T22:17:00,838   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-06-01T22:17:01,256   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-01T22:17:01,279   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-01T22:17:03,060   Collecting setuptools
2026-06-01T22:17:03,061     Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-06-01T22:17:03,076     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-06-01T22:17:03,311   Collecting wheel
2026-06-01T22:17:03,312     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-06-01T22:17:03,328     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-06-01T22:17:04,556     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2026-06-01T22:17:04,564     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2026-06-01T22:17:04,571     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2026-06-01T22:17:04,577     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2026-06-01T22:17:04,584     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2026-06-01T22:17:05,337   Collecting numpy
2026-06-01T22:17:05,338     Obtaining dependency information for numpy from https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata
2026-06-01T22:17:05,354     Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata (6.6 kB)
2026-06-01T22:17:07,472   Collecting cython
2026-06-01T22:17:07,473     Obtaining dependency information for cython from https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl.metadata
2026-06-01T22:17:07,488     Using cached https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl.metadata (7.1 kB)
2026-06-01T22:17:07,502   Discarding https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl#sha256=939fc43a47366b136afa03a5ddb4ddf357c664047d8598dfb680597a4f00104f (from https://www.piwheels.org/simple/cython/) (requires-python:>=3.8): Requested cython from https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl#sha256=939fc43a47366b136afa03a5ddb4ddf357c664047d8598dfb680597a4f00104f has inconsistent Name: expected 'cython', but metadata has 'Cython'
2026-06-01T22:17:07,566     Using cached cython-3.2.5-cp39-abi3-manylinux2014_armv7l.manylinux_2_17_armv7l.manylinux_2_31_armv7l.whl (2.9 MB)
2026-06-01T22:17:07,834   Collecting packaging>=24.0
2026-06-01T22:17:07,835     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-06-01T22:17:07,850     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-06-01T22:17:08,048   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-01T22:17:08,505   Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB)
2026-06-01T22:17:08,629   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-01T22:17:08,716   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-01T22:17:08,753   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-01T22:17:09,235   Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB)
2026-06-01T22:17:09,469   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-01T22:17:09,551   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-01T22:17:12,402   Installing collected packages: setuptools, packaging, numpy, cython, wheel
2026-06-01T22:17:24,693     Creating /tmp/pip-build-env-iy1lbtjw/overlay/local/bin
2026-06-01T22:17:24,696     changing mode of /tmp/pip-build-env-iy1lbtjw/overlay/local/bin/f2py to 755
2026-06-01T22:17:24,698     changing mode of /tmp/pip-build-env-iy1lbtjw/overlay/local/bin/numpy-config to 755
2026-06-01T22:17:27,815     changing mode of /tmp/pip-build-env-iy1lbtjw/overlay/local/bin/cygdb to 755
2026-06-01T22:17:27,817     changing mode of /tmp/pip-build-env-iy1lbtjw/overlay/local/bin/cython to 755
2026-06-01T22:17:27,819     changing mode of /tmp/pip-build-env-iy1lbtjw/overlay/local/bin/cythonize to 755
2026-06-01T22:17:27,960     changing mode of /tmp/pip-build-env-iy1lbtjw/overlay/local/bin/wheel to 755
2026-06-01T22:17:28,000   Successfully installed cython-3.2.5 numpy-2.4.6 packaging-26.2 setuptools-82.0.1 wheel-0.47.0
2026-06-01T22:17:28,495   Installing build dependencies: finished with status 'done'
2026-06-01T22:17:28,502   Getting requirements to build wheel: started
2026-06-01T22:17:28,503   Running command Getting requirements to build wheel
2026-06-01T22:17:32,786   warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'float *' from 'const float *' discards const qualifier
2026-06-01T22:17:32,791   warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'double *' from 'const double *' discards const qualifier
2026-06-01T22:17:32,800   warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'float *' from 'const float *' discards const qualifier
2026-06-01T22:17:32,805   warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'double *' from 'const double *' discards const qualifier
2026-06-01T22:17:52,838   performance hint: skbio/stats/distance/_cutils.pyx:558:0: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:52,838   performance hint: skbio/stats/distance/_cutils.pyx:567:0: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:52,839   performance hint: skbio/stats/distance/_cutils.pyx:574:0: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:55,860   performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:55,862   performance hint: skbio/stats/distance/_cutils.pyx:517:24: Exception check after calling '__pyx_fuse_0_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_0_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:55,872   performance hint: skbio/stats/distance/_cutils.pyx:541:35: Exception check after calling '__pyx_fuse_0_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:55,875   performance hint: skbio/stats/distance/_cutils.pyx:549:34: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:55,891   performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:55,894   performance hint: skbio/stats/distance/_cutils.pyx:517:24: Exception check after calling '__pyx_fuse_1_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_1_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:55,900   performance hint: skbio/stats/distance/_cutils.pyx:541:35: Exception check after calling '__pyx_fuse_1_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:55,903   performance hint: skbio/stats/distance/_cutils.pyx:549:34: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:17:55,907   performance hint: skbio/stats/distance/_cutils.pyx:563:15: Use boundscheck(False) for faster access
2026-06-01T22:17:55,908   performance hint: skbio/stats/distance/_cutils.pyx:563:22: Use boundscheck(False) for faster access
2026-06-01T22:17:55,911   performance hint: skbio/stats/distance/_cutils.pyx:563:15: Use boundscheck(False) for faster access
2026-06-01T22:17:55,912   performance hint: skbio/stats/distance/_cutils.pyx:563:22: Use boundscheck(False) for faster access
2026-06-01T22:17:55,915   performance hint: skbio/stats/distance/_cutils.pyx:571:14: Use boundscheck(False) for faster access
2026-06-01T22:17:55,916   performance hint: skbio/stats/distance/_cutils.pyx:571:21: Use boundscheck(False) for faster access
2026-06-01T22:17:55,919   performance hint: skbio/stats/distance/_cutils.pyx:571:14: Use boundscheck(False) for faster access
2026-06-01T22:17:55,920   performance hint: skbio/stats/distance/_cutils.pyx:571:21: Use boundscheck(False) for faster access
2026-06-01T22:17:55,922   performance hint: skbio/stats/distance/_cutils.pyx:578:18: Use boundscheck(False) for faster access
2026-06-01T22:17:55,925   performance hint: skbio/stats/distance/_cutils.pyx:578:18: Use boundscheck(False) for faster access
2026-06-01T22:17:56,179   [1/7] Cythonizing skbio/alignment/_cutils.pyx
2026-06-01T22:17:56,179   [2/7] Cythonizing skbio/metadata/_intersection.pyx
2026-06-01T22:17:56,180   [3/7] Cythonizing skbio/stats/ordination/_cutils.pyx
2026-06-01T22:17:56,180   [4/7] Cythonizing skbio/tree/_c_me.pyx
2026-06-01T22:17:56,181   [5/7] Cythonizing skbio/tree/_c_nj.pyx
2026-06-01T22:17:56,182   [6/7] Cythonizing skbio/diversity/_phylogenetic.pyx
2026-06-01T22:17:56,182   [7/7] Cythonizing skbio/stats/distance/_cutils.pyx
2026-06-01T22:17:56,398   running egg_info
2026-06-01T22:17:56,406   writing scikit_bio.egg-info/PKG-INFO
2026-06-01T22:17:56,417   writing dependency_links to scikit_bio.egg-info/dependency_links.txt
2026-06-01T22:17:56,423   writing requirements to scikit_bio.egg-info/requires.txt
2026-06-01T22:17:56,424   writing top-level names to scikit_bio.egg-info/top_level.txt
2026-06-01T22:17:56,449   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:17:56,450   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:17:56,450   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:17:56,451   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:17:56,451   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:17:56,456   reading manifest file 'scikit_bio.egg-info/SOURCES.txt'
2026-06-01T22:17:56,602   reading manifest template 'MANIFEST.in'
2026-06-01T22:17:56,671   no previously-included directories found matching 'doc/build'
2026-06-01T22:17:56,673   no previously-included directories found matching 'doc/source/generated'
2026-06-01T22:17:56,675   no previously-included directories found matching 'web/_build'
2026-06-01T22:17:56,680   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2026-06-01T22:17:56,684   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2026-06-01T22:17:56,689   warning: no previously-included files matching '*.so' found anywhere in distribution
2026-06-01T22:17:56,692   warning: no previously-included files matching '.*.swp' found anywhere in distribution
2026-06-01T22:17:56,696   warning: no previously-included files matching '.coverage' found anywhere in distribution
2026-06-01T22:17:56,697   adding license file 'LICENSE.txt'
2026-06-01T22:17:56,741   writing manifest file 'scikit_bio.egg-info/SOURCES.txt'
2026-06-01T22:17:57,868   Getting requirements to build wheel: finished with status 'done'
2026-06-01T22:17:57,872   Created temporary directory: /tmp/pip-modern-metadata-uc6rfya5
2026-06-01T22:17:57,874   Preparing metadata (pyproject.toml): started
2026-06-01T22:17:57,875   Running command Preparing metadata (pyproject.toml)
2026-06-01T22:18:02,046   warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'float *' from 'const float *' discards const qualifier
2026-06-01T22:18:02,051   warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'double *' from 'const double *' discards const qualifier
2026-06-01T22:18:02,059   warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'float *' from 'const float *' discards const qualifier
2026-06-01T22:18:02,065   warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'double *' from 'const double *' discards const qualifier
2026-06-01T22:18:21,841   performance hint: skbio/stats/distance/_cutils.pyx:558:0: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:21,842   performance hint: skbio/stats/distance/_cutils.pyx:567:0: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:21,843   performance hint: skbio/stats/distance/_cutils.pyx:574:0: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:24,846   performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:24,849   performance hint: skbio/stats/distance/_cutils.pyx:517:24: Exception check after calling '__pyx_fuse_0_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_0_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:24,859   performance hint: skbio/stats/distance/_cutils.pyx:541:35: Exception check after calling '__pyx_fuse_0_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:24,863   performance hint: skbio/stats/distance/_cutils.pyx:549:34: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:24,880   performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:24,882   performance hint: skbio/stats/distance/_cutils.pyx:517:24: Exception check after calling '__pyx_fuse_1_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_1_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:24,889   performance hint: skbio/stats/distance/_cutils.pyx:541:35: Exception check after calling '__pyx_fuse_1_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:24,893   performance hint: skbio/stats/distance/_cutils.pyx:549:34: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:24,897   performance hint: skbio/stats/distance/_cutils.pyx:563:15: Use boundscheck(False) for faster access
2026-06-01T22:18:24,899   performance hint: skbio/stats/distance/_cutils.pyx:563:22: Use boundscheck(False) for faster access
2026-06-01T22:18:24,902   performance hint: skbio/stats/distance/_cutils.pyx:563:15: Use boundscheck(False) for faster access
2026-06-01T22:18:24,903   performance hint: skbio/stats/distance/_cutils.pyx:563:22: Use boundscheck(False) for faster access
2026-06-01T22:18:24,907   performance hint: skbio/stats/distance/_cutils.pyx:571:14: Use boundscheck(False) for faster access
2026-06-01T22:18:24,908   performance hint: skbio/stats/distance/_cutils.pyx:571:21: Use boundscheck(False) for faster access
2026-06-01T22:18:24,911   performance hint: skbio/stats/distance/_cutils.pyx:571:14: Use boundscheck(False) for faster access
2026-06-01T22:18:24,912   performance hint: skbio/stats/distance/_cutils.pyx:571:21: Use boundscheck(False) for faster access
2026-06-01T22:18:24,916   performance hint: skbio/stats/distance/_cutils.pyx:578:18: Use boundscheck(False) for faster access
2026-06-01T22:18:24,919   performance hint: skbio/stats/distance/_cutils.pyx:578:18: Use boundscheck(False) for faster access
2026-06-01T22:18:25,181   [1/7] Cythonizing skbio/alignment/_cutils.pyx
2026-06-01T22:18:25,182   [2/7] Cythonizing skbio/metadata/_intersection.pyx
2026-06-01T22:18:25,183   [3/7] Cythonizing skbio/stats/ordination/_cutils.pyx
2026-06-01T22:18:25,183   [4/7] Cythonizing skbio/tree/_c_me.pyx
2026-06-01T22:18:25,184   [5/7] Cythonizing skbio/tree/_c_nj.pyx
2026-06-01T22:18:25,185   [6/7] Cythonizing skbio/diversity/_phylogenetic.pyx
2026-06-01T22:18:25,185   [7/7] Cythonizing skbio/stats/distance/_cutils.pyx
2026-06-01T22:18:25,371   running dist_info
2026-06-01T22:18:25,384   creating /tmp/pip-modern-metadata-uc6rfya5/scikit_bio.egg-info
2026-06-01T22:18:25,385   writing /tmp/pip-modern-metadata-uc6rfya5/scikit_bio.egg-info/PKG-INFO
2026-06-01T22:18:25,396   writing dependency_links to /tmp/pip-modern-metadata-uc6rfya5/scikit_bio.egg-info/dependency_links.txt
2026-06-01T22:18:25,401   writing requirements to /tmp/pip-modern-metadata-uc6rfya5/scikit_bio.egg-info/requires.txt
2026-06-01T22:18:25,402   writing top-level names to /tmp/pip-modern-metadata-uc6rfya5/scikit_bio.egg-info/top_level.txt
2026-06-01T22:18:25,403   writing manifest file '/tmp/pip-modern-metadata-uc6rfya5/scikit_bio.egg-info/SOURCES.txt'
2026-06-01T22:18:25,425   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:18:25,426   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:18:25,426   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:18:25,427   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:18:25,427   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:18:25,432   reading manifest file '/tmp/pip-modern-metadata-uc6rfya5/scikit_bio.egg-info/SOURCES.txt'
2026-06-01T22:18:25,434   reading manifest template 'MANIFEST.in'
2026-06-01T22:18:25,594   no previously-included directories found matching 'doc/build'
2026-06-01T22:18:25,596   no previously-included directories found matching 'doc/source/generated'
2026-06-01T22:18:25,597   no previously-included directories found matching 'web/_build'
2026-06-01T22:18:25,599   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2026-06-01T22:18:25,602   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2026-06-01T22:18:25,605   warning: no previously-included files matching '*.so' found anywhere in distribution
2026-06-01T22:18:25,607   warning: no previously-included files matching '.*.swp' found anywhere in distribution
2026-06-01T22:18:25,609   warning: no previously-included files matching '.coverage' found anywhere in distribution
2026-06-01T22:18:25,610   adding license file 'LICENSE.txt'
2026-06-01T22:18:25,642   writing manifest file '/tmp/pip-modern-metadata-uc6rfya5/scikit_bio.egg-info/SOURCES.txt'
2026-06-01T22:18:25,644   creating '/tmp/pip-modern-metadata-uc6rfya5/scikit_bio-0.7.3.dist-info'
2026-06-01T22:18:26,817   Preparing metadata (pyproject.toml): finished with status 'done'
2026-06-01T22:18:26,823   Source in /tmp/pip-wheel-vowptatx/scikit-bio_ebbddcfd212446cd92d9ca25f4ae1347 has version 0.7.3, which satisfies requirement scikit-bio==0.7.3 from https://files.pythonhosted.org/packages/f1/b7/9a349408f2edb09be83a2d105a0c1ecbfcb52d794abfeb601a12a3cc5093/scikit_bio-0.7.3.tar.gz
2026-06-01T22:18:26,824   Removed scikit-bio==0.7.3 from https://files.pythonhosted.org/packages/f1/b7/9a349408f2edb09be83a2d105a0c1ecbfcb52d794abfeb601a12a3cc5093/scikit_bio-0.7.3.tar.gz from build tracker '/tmp/pip-build-tracker-3cr9_gx7'
2026-06-01T22:18:26,831 Created temporary directory: /tmp/pip-unpack-l55960u9
2026-06-01T22:18:26,832 Building wheels for collected packages: scikit-bio
2026-06-01T22:18:26,838   Created temporary directory: /tmp/pip-wheel-w8ol2vwr
2026-06-01T22:18:26,838   Destination directory: /tmp/pip-wheel-w8ol2vwr
2026-06-01T22:18:26,840   Building wheel for scikit-bio (pyproject.toml): started
2026-06-01T22:18:26,841   Running command Building wheel for scikit-bio (pyproject.toml)
2026-06-01T22:18:30,976   warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'float *' from 'const float *' discards const qualifier
2026-06-01T22:18:30,981   warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'double *' from 'const double *' discards const qualifier
2026-06-01T22:18:30,989   warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'float *' from 'const float *' discards const qualifier
2026-06-01T22:18:30,995   warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'double *' from 'const double *' discards const qualifier
2026-06-01T22:18:50,500   performance hint: skbio/stats/distance/_cutils.pyx:558:0: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:50,501   performance hint: skbio/stats/distance/_cutils.pyx:567:0: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:50,502   performance hint: skbio/stats/distance/_cutils.pyx:574:0: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:53,465   performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:53,468   performance hint: skbio/stats/distance/_cutils.pyx:517:24: Exception check after calling '__pyx_fuse_0_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_0_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:53,478   performance hint: skbio/stats/distance/_cutils.pyx:541:35: Exception check after calling '__pyx_fuse_0_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:53,482   performance hint: skbio/stats/distance/_cutils.pyx:549:34: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:53,498   performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:53,501   performance hint: skbio/stats/distance/_cutils.pyx:517:24: Exception check after calling '__pyx_fuse_1_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_1_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:53,507   performance hint: skbio/stats/distance/_cutils.pyx:541:35: Exception check after calling '__pyx_fuse_1_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:53,511   performance hint: skbio/stats/distance/_cutils.pyx:549:34: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2026-06-01T22:18:53,515   performance hint: skbio/stats/distance/_cutils.pyx:563:15: Use boundscheck(False) for faster access
2026-06-01T22:18:53,516   performance hint: skbio/stats/distance/_cutils.pyx:563:22: Use boundscheck(False) for faster access
2026-06-01T22:18:53,520   performance hint: skbio/stats/distance/_cutils.pyx:563:15: Use boundscheck(False) for faster access
2026-06-01T22:18:53,521   performance hint: skbio/stats/distance/_cutils.pyx:563:22: Use boundscheck(False) for faster access
2026-06-01T22:18:53,524   performance hint: skbio/stats/distance/_cutils.pyx:571:14: Use boundscheck(False) for faster access
2026-06-01T22:18:53,525   performance hint: skbio/stats/distance/_cutils.pyx:571:21: Use boundscheck(False) for faster access
2026-06-01T22:18:53,528   performance hint: skbio/stats/distance/_cutils.pyx:571:14: Use boundscheck(False) for faster access
2026-06-01T22:18:53,529   performance hint: skbio/stats/distance/_cutils.pyx:571:21: Use boundscheck(False) for faster access
2026-06-01T22:18:53,532   performance hint: skbio/stats/distance/_cutils.pyx:578:18: Use boundscheck(False) for faster access
2026-06-01T22:18:53,535   performance hint: skbio/stats/distance/_cutils.pyx:578:18: Use boundscheck(False) for faster access
2026-06-01T22:18:53,790   [1/7] Cythonizing skbio/alignment/_cutils.pyx
2026-06-01T22:18:53,790   [2/7] Cythonizing skbio/metadata/_intersection.pyx
2026-06-01T22:18:53,791   [3/7] Cythonizing skbio/stats/ordination/_cutils.pyx
2026-06-01T22:18:53,791   [4/7] Cythonizing skbio/tree/_c_me.pyx
2026-06-01T22:18:53,792   [5/7] Cythonizing skbio/tree/_c_nj.pyx
2026-06-01T22:18:53,792   [6/7] Cythonizing skbio/diversity/_phylogenetic.pyx
2026-06-01T22:18:53,793   [7/7] Cythonizing skbio/stats/distance/_cutils.pyx
2026-06-01T22:18:53,971   running bdist_wheel
2026-06-01T22:18:53,996   running build
2026-06-01T22:18:53,997   running build_py
2026-06-01T22:18:54,005   creating build/lib.linux-armv7l-cpython-311/skbio
2026-06-01T22:18:54,008   copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio
2026-06-01T22:18:54,011   copying skbio/_base.py -> build/lib.linux-armv7l-cpython-311/skbio
2026-06-01T22:18:54,013   copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-311/skbio
2026-06-01T22:18:54,017   copying skbio/_config.py -> build/lib.linux-armv7l-cpython-311/skbio
2026-06-01T22:18:54,019   copying skbio/test.py -> build/lib.linux-armv7l-cpython-311/skbio
2026-06-01T22:18:54,021   running egg_info
2026-06-01T22:18:54,034   writing scikit_bio.egg-info/PKG-INFO
2026-06-01T22:18:54,045   writing dependency_links to scikit_bio.egg-info/dependency_links.txt
2026-06-01T22:18:54,050   writing requirements to scikit_bio.egg-info/requires.txt
2026-06-01T22:18:54,051   writing top-level names to scikit_bio.egg-info/top_level.txt
2026-06-01T22:18:54,057   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:18:54,058   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:18:54,058   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:18:54,059   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:18:54,059   dependency /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2026-06-01T22:18:54,066   reading manifest file 'scikit_bio.egg-info/SOURCES.txt'
2026-06-01T22:18:54,235   reading manifest template 'MANIFEST.in'
2026-06-01T22:18:54,286   no previously-included directories found matching 'doc/build'
2026-06-01T22:18:54,289   no previously-included directories found matching 'doc/source/generated'
2026-06-01T22:18:54,291   no previously-included directories found matching 'web/_build'
2026-06-01T22:18:54,296   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2026-06-01T22:18:54,301   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2026-06-01T22:18:54,306   warning: no previously-included files matching '*.so' found anywhere in distribution
2026-06-01T22:18:54,311   warning: no previously-included files matching '.*.swp' found anywhere in distribution
2026-06-01T22:18:54,315   warning: no previously-included files matching '.coverage' found anywhere in distribution
2026-06-01T22:18:54,316   adding license file 'LICENSE.txt'
2026-06-01T22:18:54,360   writing manifest file 'scikit_bio.egg-info/SOURCES.txt'
2026-06-01T22:18:54,365   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.alignment' is absent from the `packages` configuration.
2026-06-01T22:18:54,366   !!

2026-06-01T22:18:54,367           ********************************************************************************
2026-06-01T22:18:54,367           ############################
2026-06-01T22:18:54,368           # Package would be ignored #
2026-06-01T22:18:54,368           ############################
2026-06-01T22:18:54,369           Python recognizes 'skbio.alignment' as an importable package[^1],
2026-06-01T22:18:54,369           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,370           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,371           package, please make sure that 'skbio.alignment' is explicitly added
2026-06-01T22:18:54,372           to the `packages` configuration field.

2026-06-01T22:18:54,373           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,374           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,374           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,376           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,377           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,378           If you don't want 'skbio.alignment' to be distributed and are
2026-06-01T22:18:54,379           already explicitly excluding 'skbio.alignment' via
2026-06-01T22:18:54,379           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,380           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,380           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,381           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,382           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,384           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,384                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,385                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,385                 directory, all directories are treated like packages.
2026-06-01T22:18:54,386           ********************************************************************************

2026-06-01T22:18:54,387   !!
2026-06-01T22:18:54,388     check.warn(importable)
2026-06-01T22:18:54,388   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.alignment.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,389   !!

2026-06-01T22:18:54,390           ********************************************************************************
2026-06-01T22:18:54,390           ############################
2026-06-01T22:18:54,390           # Package would be ignored #
2026-06-01T22:18:54,391           ############################
2026-06-01T22:18:54,391           Python recognizes 'skbio.alignment.tests' as an importable package[^1],
2026-06-01T22:18:54,392           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,393           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,393           package, please make sure that 'skbio.alignment.tests' is explicitly added
2026-06-01T22:18:54,394           to the `packages` configuration field.

2026-06-01T22:18:54,394           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,395           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,396           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,397           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,397           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,398           If you don't want 'skbio.alignment.tests' to be distributed and are
2026-06-01T22:18:54,399           already explicitly excluding 'skbio.alignment.tests' via
2026-06-01T22:18:54,399           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,400           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,400           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,401           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,402           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,404           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,404                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,405                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,406                 directory, all directories are treated like packages.
2026-06-01T22:18:54,406           ********************************************************************************

2026-06-01T22:18:54,407   !!
2026-06-01T22:18:54,408     check.warn(importable)
2026-06-01T22:18:54,408   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.alignment.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:54,409   !!

2026-06-01T22:18:54,410           ********************************************************************************
2026-06-01T22:18:54,411           ############################
2026-06-01T22:18:54,411           # Package would be ignored #
2026-06-01T22:18:54,412           ############################
2026-06-01T22:18:54,412           Python recognizes 'skbio.alignment.tests.data' as an importable package[^1],
2026-06-01T22:18:54,413           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,414           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,415           package, please make sure that 'skbio.alignment.tests.data' is explicitly added
2026-06-01T22:18:54,415           to the `packages` configuration field.

2026-06-01T22:18:54,416           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,417           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,418           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,419           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,420           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,420           If you don't want 'skbio.alignment.tests.data' to be distributed and are
2026-06-01T22:18:54,421           already explicitly excluding 'skbio.alignment.tests.data' via
2026-06-01T22:18:54,421           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,422           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,422           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,423           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,424           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,425           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,426                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,426                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,427                 directory, all directories are treated like packages.
2026-06-01T22:18:54,427           ********************************************************************************

2026-06-01T22:18:54,428   !!
2026-06-01T22:18:54,429     check.warn(importable)
2026-06-01T22:18:54,429   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.binaries' is absent from the `packages` configuration.
2026-06-01T22:18:54,430   !!

2026-06-01T22:18:54,431           ********************************************************************************
2026-06-01T22:18:54,431           ############################
2026-06-01T22:18:54,432           # Package would be ignored #
2026-06-01T22:18:54,433           ############################
2026-06-01T22:18:54,433           Python recognizes 'skbio.binaries' as an importable package[^1],
2026-06-01T22:18:54,434           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,435           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,435           package, please make sure that 'skbio.binaries' is explicitly added
2026-06-01T22:18:54,436           to the `packages` configuration field.

2026-06-01T22:18:54,437           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,437           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,438           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,439           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,440           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,441           If you don't want 'skbio.binaries' to be distributed and are
2026-06-01T22:18:54,441           already explicitly excluding 'skbio.binaries' via
2026-06-01T22:18:54,442           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,442           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,443           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,444           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,445           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,446           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,447                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,448                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,448                 directory, all directories are treated like packages.
2026-06-01T22:18:54,448           ********************************************************************************

2026-06-01T22:18:54,449   !!
2026-06-01T22:18:54,450     check.warn(importable)
2026-06-01T22:18:54,450   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.binaries.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,450   !!

2026-06-01T22:18:54,451           ********************************************************************************
2026-06-01T22:18:54,451           ############################
2026-06-01T22:18:54,452           # Package would be ignored #
2026-06-01T22:18:54,452           ############################
2026-06-01T22:18:54,453           Python recognizes 'skbio.binaries.tests' as an importable package[^1],
2026-06-01T22:18:54,453           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,454           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,454           package, please make sure that 'skbio.binaries.tests' is explicitly added
2026-06-01T22:18:54,454           to the `packages` configuration field.

2026-06-01T22:18:54,455           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,456           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,456           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,457           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,458           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,459           If you don't want 'skbio.binaries.tests' to be distributed and are
2026-06-01T22:18:54,459           already explicitly excluding 'skbio.binaries.tests' via
2026-06-01T22:18:54,460           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,460           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,460           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,462           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,463           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,464           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,464                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,465                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,465                 directory, all directories are treated like packages.
2026-06-01T22:18:54,466           ********************************************************************************

2026-06-01T22:18:54,467   !!
2026-06-01T22:18:54,468     check.warn(importable)
2026-06-01T22:18:54,468   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity' is absent from the `packages` configuration.
2026-06-01T22:18:54,469   !!

2026-06-01T22:18:54,470           ********************************************************************************
2026-06-01T22:18:54,471           ############################
2026-06-01T22:18:54,471           # Package would be ignored #
2026-06-01T22:18:54,472           ############################
2026-06-01T22:18:54,472           Python recognizes 'skbio.diversity' as an importable package[^1],
2026-06-01T22:18:54,473           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,474           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,475           package, please make sure that 'skbio.diversity' is explicitly added
2026-06-01T22:18:54,475           to the `packages` configuration field.

2026-06-01T22:18:54,476           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,476           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,477           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,478           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,478           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,479           If you don't want 'skbio.diversity' to be distributed and are
2026-06-01T22:18:54,480           already explicitly excluding 'skbio.diversity' via
2026-06-01T22:18:54,480           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,480           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,481           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,482           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,482           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,484           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,484                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,485                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,485                 directory, all directories are treated like packages.
2026-06-01T22:18:54,486           ********************************************************************************

2026-06-01T22:18:54,487   !!
2026-06-01T22:18:54,487     check.warn(importable)
2026-06-01T22:18:54,488   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.alpha' is absent from the `packages` configuration.
2026-06-01T22:18:54,488   !!

2026-06-01T22:18:54,489           ********************************************************************************
2026-06-01T22:18:54,490           ############################
2026-06-01T22:18:54,490           # Package would be ignored #
2026-06-01T22:18:54,491           ############################
2026-06-01T22:18:54,491           Python recognizes 'skbio.diversity.alpha' as an importable package[^1],
2026-06-01T22:18:54,491           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,492           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,493           package, please make sure that 'skbio.diversity.alpha' is explicitly added
2026-06-01T22:18:54,493           to the `packages` configuration field.

2026-06-01T22:18:54,494           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,495           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,495           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,496           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,497           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,498           If you don't want 'skbio.diversity.alpha' to be distributed and are
2026-06-01T22:18:54,499           already explicitly excluding 'skbio.diversity.alpha' via
2026-06-01T22:18:54,500           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,500           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,501           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,502           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,503           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,504           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,504                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,505                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,505                 directory, all directories are treated like packages.
2026-06-01T22:18:54,505           ********************************************************************************

2026-06-01T22:18:54,506   !!
2026-06-01T22:18:54,507     check.warn(importable)
2026-06-01T22:18:54,507   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.alpha.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,508   !!

2026-06-01T22:18:54,508           ********************************************************************************
2026-06-01T22:18:54,509           ############################
2026-06-01T22:18:54,509           # Package would be ignored #
2026-06-01T22:18:54,510           ############################
2026-06-01T22:18:54,510           Python recognizes 'skbio.diversity.alpha.tests' as an importable package[^1],
2026-06-01T22:18:54,511           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,511           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,512           package, please make sure that 'skbio.diversity.alpha.tests' is explicitly added
2026-06-01T22:18:54,512           to the `packages` configuration field.

2026-06-01T22:18:54,513           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,514           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,514           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,515           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,516           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,517           If you don't want 'skbio.diversity.alpha.tests' to be distributed and are
2026-06-01T22:18:54,517           already explicitly excluding 'skbio.diversity.alpha.tests' via
2026-06-01T22:18:54,518           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,518           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,519           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,520           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,521           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,522           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,523                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,523                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,524                 directory, all directories are treated like packages.
2026-06-01T22:18:54,524           ********************************************************************************

2026-06-01T22:18:54,525   !!
2026-06-01T22:18:54,525     check.warn(importable)
2026-06-01T22:18:54,526   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.alpha.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:54,526   !!

2026-06-01T22:18:54,528           ********************************************************************************
2026-06-01T22:18:54,528           ############################
2026-06-01T22:18:54,529           # Package would be ignored #
2026-06-01T22:18:54,529           ############################
2026-06-01T22:18:54,529           Python recognizes 'skbio.diversity.alpha.tests.data' as an importable package[^1],
2026-06-01T22:18:54,530           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,531           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,531           package, please make sure that 'skbio.diversity.alpha.tests.data' is explicitly added
2026-06-01T22:18:54,531           to the `packages` configuration field.

2026-06-01T22:18:54,532           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,533           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,533           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,534           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,534           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,535           If you don't want 'skbio.diversity.alpha.tests.data' to be distributed and are
2026-06-01T22:18:54,536           already explicitly excluding 'skbio.diversity.alpha.tests.data' via
2026-06-01T22:18:54,536           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,537           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,537           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,538           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,539           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,541           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,541                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,542                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,543                 directory, all directories are treated like packages.
2026-06-01T22:18:54,543           ********************************************************************************

2026-06-01T22:18:54,545   !!
2026-06-01T22:18:54,545     check.warn(importable)
2026-06-01T22:18:54,546   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.beta' is absent from the `packages` configuration.
2026-06-01T22:18:54,546   !!

2026-06-01T22:18:54,548           ********************************************************************************
2026-06-01T22:18:54,548           ############################
2026-06-01T22:18:54,548           # Package would be ignored #
2026-06-01T22:18:54,549           ############################
2026-06-01T22:18:54,549           Python recognizes 'skbio.diversity.beta' as an importable package[^1],
2026-06-01T22:18:54,550           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,551           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,551           package, please make sure that 'skbio.diversity.beta' is explicitly added
2026-06-01T22:18:54,552           to the `packages` configuration field.

2026-06-01T22:18:54,553           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,553           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,554           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,555           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,557           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,557           If you don't want 'skbio.diversity.beta' to be distributed and are
2026-06-01T22:18:54,558           already explicitly excluding 'skbio.diversity.beta' via
2026-06-01T22:18:54,558           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,558           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,559           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,559           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,560           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,561           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,562                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,562                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,562                 directory, all directories are treated like packages.
2026-06-01T22:18:54,563           ********************************************************************************

2026-06-01T22:18:54,563   !!
2026-06-01T22:18:54,564     check.warn(importable)
2026-06-01T22:18:54,564   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.beta.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,565   !!

2026-06-01T22:18:54,565           ********************************************************************************
2026-06-01T22:18:54,566           ############################
2026-06-01T22:18:54,566           # Package would be ignored #
2026-06-01T22:18:54,567           ############################
2026-06-01T22:18:54,567           Python recognizes 'skbio.diversity.beta.tests' as an importable package[^1],
2026-06-01T22:18:54,568           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,569           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,569           package, please make sure that 'skbio.diversity.beta.tests' is explicitly added
2026-06-01T22:18:54,570           to the `packages` configuration field.

2026-06-01T22:18:54,571           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,571           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,572           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,573           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,574           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,575           If you don't want 'skbio.diversity.beta.tests' to be distributed and are
2026-06-01T22:18:54,575           already explicitly excluding 'skbio.diversity.beta.tests' via
2026-06-01T22:18:54,575           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,576           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,576           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,577           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,578           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,580           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,581                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,581                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,582                 directory, all directories are treated like packages.
2026-06-01T22:18:54,582           ********************************************************************************

2026-06-01T22:18:54,584   !!
2026-06-01T22:18:54,584     check.warn(importable)
2026-06-01T22:18:54,584   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.beta.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:54,585   !!

2026-06-01T22:18:54,586           ********************************************************************************
2026-06-01T22:18:54,586           ############################
2026-06-01T22:18:54,586           # Package would be ignored #
2026-06-01T22:18:54,587           ############################
2026-06-01T22:18:54,587           Python recognizes 'skbio.diversity.beta.tests.data' as an importable package[^1],
2026-06-01T22:18:54,588           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,588           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,589           package, please make sure that 'skbio.diversity.beta.tests.data' is explicitly added
2026-06-01T22:18:54,589           to the `packages` configuration field.

2026-06-01T22:18:54,590           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,590           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,591           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,592           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,593           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,593           If you don't want 'skbio.diversity.beta.tests.data' to be distributed and are
2026-06-01T22:18:54,594           already explicitly excluding 'skbio.diversity.beta.tests.data' via
2026-06-01T22:18:54,594           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,595           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,596           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,597           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,598           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,600           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,600                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,601                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,601                 directory, all directories are treated like packages.
2026-06-01T22:18:54,602           ********************************************************************************

2026-06-01T22:18:54,603   !!
2026-06-01T22:18:54,603     check.warn(importable)
2026-06-01T22:18:54,604   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,604   !!

2026-06-01T22:18:54,605           ********************************************************************************
2026-06-01T22:18:54,606           ############################
2026-06-01T22:18:54,606           # Package would be ignored #
2026-06-01T22:18:54,607           ############################
2026-06-01T22:18:54,607           Python recognizes 'skbio.diversity.tests' as an importable package[^1],
2026-06-01T22:18:54,608           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,609           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,610           package, please make sure that 'skbio.diversity.tests' is explicitly added
2026-06-01T22:18:54,610           to the `packages` configuration field.

2026-06-01T22:18:54,611           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,612           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,612           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,613           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,614           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,614           If you don't want 'skbio.diversity.tests' to be distributed and are
2026-06-01T22:18:54,615           already explicitly excluding 'skbio.diversity.tests' via
2026-06-01T22:18:54,615           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,615           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,616           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,617           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,618           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,619           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,619                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,620                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,620                 directory, all directories are treated like packages.
2026-06-01T22:18:54,621           ********************************************************************************

2026-06-01T22:18:54,622   !!
2026-06-01T22:18:54,622     check.warn(importable)
2026-06-01T22:18:54,622   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.embedding' is absent from the `packages` configuration.
2026-06-01T22:18:54,623   !!

2026-06-01T22:18:54,624           ********************************************************************************
2026-06-01T22:18:54,625           ############################
2026-06-01T22:18:54,625           # Package would be ignored #
2026-06-01T22:18:54,626           ############################
2026-06-01T22:18:54,627           Python recognizes 'skbio.embedding' as an importable package[^1],
2026-06-01T22:18:54,627           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,628           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,629           package, please make sure that 'skbio.embedding' is explicitly added
2026-06-01T22:18:54,629           to the `packages` configuration field.

2026-06-01T22:18:54,630           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,631           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,631           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,632           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,633           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,634           If you don't want 'skbio.embedding' to be distributed and are
2026-06-01T22:18:54,634           already explicitly excluding 'skbio.embedding' via
2026-06-01T22:18:54,635           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,636           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,636           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,637           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,639           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,640           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,640                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,640                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,641                 directory, all directories are treated like packages.
2026-06-01T22:18:54,641           ********************************************************************************

2026-06-01T22:18:54,642   !!
2026-06-01T22:18:54,642     check.warn(importable)
2026-06-01T22:18:54,642   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.embedding.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,643   !!

2026-06-01T22:18:54,643           ********************************************************************************
2026-06-01T22:18:54,644           ############################
2026-06-01T22:18:54,644           # Package would be ignored #
2026-06-01T22:18:54,645           ############################
2026-06-01T22:18:54,645           Python recognizes 'skbio.embedding.tests' as an importable package[^1],
2026-06-01T22:18:54,645           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,646           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,646           package, please make sure that 'skbio.embedding.tests' is explicitly added
2026-06-01T22:18:54,647           to the `packages` configuration field.

2026-06-01T22:18:54,648           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,648           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,649           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,650           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,651           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,652           If you don't want 'skbio.embedding.tests' to be distributed and are
2026-06-01T22:18:54,652           already explicitly excluding 'skbio.embedding.tests' via
2026-06-01T22:18:54,653           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,653           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,654           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,655           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,656           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,657           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,658                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,658                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,659                 directory, all directories are treated like packages.
2026-06-01T22:18:54,659           ********************************************************************************

2026-06-01T22:18:54,660   !!
2026-06-01T22:18:54,660     check.warn(importable)
2026-06-01T22:18:54,661   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.embedding.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:54,661   !!

2026-06-01T22:18:54,663           ********************************************************************************
2026-06-01T22:18:54,663           ############################
2026-06-01T22:18:54,664           # Package would be ignored #
2026-06-01T22:18:54,664           ############################
2026-06-01T22:18:54,665           Python recognizes 'skbio.embedding.tests.data' as an importable package[^1],
2026-06-01T22:18:54,666           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,666           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,667           package, please make sure that 'skbio.embedding.tests.data' is explicitly added
2026-06-01T22:18:54,667           to the `packages` configuration field.

2026-06-01T22:18:54,668           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,668           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,669           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,669           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,670           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,671           If you don't want 'skbio.embedding.tests.data' to be distributed and are
2026-06-01T22:18:54,671           already explicitly excluding 'skbio.embedding.tests.data' via
2026-06-01T22:18:54,672           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,672           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,672           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,673           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,674           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,675           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,676                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,676                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,677                 directory, all directories are treated like packages.
2026-06-01T22:18:54,677           ********************************************************************************

2026-06-01T22:18:54,678   !!
2026-06-01T22:18:54,679     check.warn(importable)
2026-06-01T22:18:54,679   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io' is absent from the `packages` configuration.
2026-06-01T22:18:54,680   !!

2026-06-01T22:18:54,681           ********************************************************************************
2026-06-01T22:18:54,682           ############################
2026-06-01T22:18:54,682           # Package would be ignored #
2026-06-01T22:18:54,683           ############################
2026-06-01T22:18:54,683           Python recognizes 'skbio.io' as an importable package[^1],
2026-06-01T22:18:54,684           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,685           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,685           package, please make sure that 'skbio.io' is explicitly added
2026-06-01T22:18:54,685           to the `packages` configuration field.

2026-06-01T22:18:54,686           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,687           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,687           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,688           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,689           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,690           If you don't want 'skbio.io' to be distributed and are
2026-06-01T22:18:54,691           already explicitly excluding 'skbio.io' via
2026-06-01T22:18:54,692           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,692           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,693           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,694           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,695           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,696           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,696                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,697                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,697                 directory, all directories are treated like packages.
2026-06-01T22:18:54,698           ********************************************************************************

2026-06-01T22:18:54,698   !!
2026-06-01T22:18:54,699     check.warn(importable)
2026-06-01T22:18:54,699   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io.format' is absent from the `packages` configuration.
2026-06-01T22:18:54,699   !!

2026-06-01T22:18:54,700           ********************************************************************************
2026-06-01T22:18:54,701           ############################
2026-06-01T22:18:54,701           # Package would be ignored #
2026-06-01T22:18:54,701           ############################
2026-06-01T22:18:54,702           Python recognizes 'skbio.io.format' as an importable package[^1],
2026-06-01T22:18:54,702           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,703           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,703           package, please make sure that 'skbio.io.format' is explicitly added
2026-06-01T22:18:54,704           to the `packages` configuration field.

2026-06-01T22:18:54,705           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,705           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,706           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,707           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,708           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,708           If you don't want 'skbio.io.format' to be distributed and are
2026-06-01T22:18:54,709           already explicitly excluding 'skbio.io.format' via
2026-06-01T22:18:54,710           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,710           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,711           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,712           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,713           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,714           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,714                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,715                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,715                 directory, all directories are treated like packages.
2026-06-01T22:18:54,716           ********************************************************************************

2026-06-01T22:18:54,717   !!
2026-06-01T22:18:54,718     check.warn(importable)
2026-06-01T22:18:54,718   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io.format.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,719   !!

2026-06-01T22:18:54,720           ********************************************************************************
2026-06-01T22:18:54,720           ############################
2026-06-01T22:18:54,720           # Package would be ignored #
2026-06-01T22:18:54,721           ############################
2026-06-01T22:18:54,721           Python recognizes 'skbio.io.format.tests' as an importable package[^1],
2026-06-01T22:18:54,722           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,722           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,723           package, please make sure that 'skbio.io.format.tests' is explicitly added
2026-06-01T22:18:54,723           to the `packages` configuration field.

2026-06-01T22:18:54,724           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,724           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,724           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,725           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,726           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,727           If you don't want 'skbio.io.format.tests' to be distributed and are
2026-06-01T22:18:54,727           already explicitly excluding 'skbio.io.format.tests' via
2026-06-01T22:18:54,728           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,728           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,728           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,729           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,731           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,732           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,733                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,733                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,734                 directory, all directories are treated like packages.
2026-06-01T22:18:54,735           ********************************************************************************

2026-06-01T22:18:54,736   !!
2026-06-01T22:18:54,736     check.warn(importable)
2026-06-01T22:18:54,737   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io.format.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:54,738   !!

2026-06-01T22:18:54,739           ********************************************************************************
2026-06-01T22:18:54,739           ############################
2026-06-01T22:18:54,740           # Package would be ignored #
2026-06-01T22:18:54,740           ############################
2026-06-01T22:18:54,741           Python recognizes 'skbio.io.format.tests.data' as an importable package[^1],
2026-06-01T22:18:54,741           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,742           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,743           package, please make sure that 'skbio.io.format.tests.data' is explicitly added
2026-06-01T22:18:54,743           to the `packages` configuration field.

2026-06-01T22:18:54,744           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,745           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,745           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,746           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,748           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,749           If you don't want 'skbio.io.format.tests.data' to be distributed and are
2026-06-01T22:18:54,749           already explicitly excluding 'skbio.io.format.tests.data' via
2026-06-01T22:18:54,749           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,750           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,750           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,751           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,752           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,753           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,753                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,754                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,754                 directory, all directories are treated like packages.
2026-06-01T22:18:54,754           ********************************************************************************

2026-06-01T22:18:54,755   !!
2026-06-01T22:18:54,756     check.warn(importable)
2026-06-01T22:18:54,756   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,756   !!

2026-06-01T22:18:54,768           ********************************************************************************
2026-06-01T22:18:54,769           ############################
2026-06-01T22:18:54,769           # Package would be ignored #
2026-06-01T22:18:54,770           ############################
2026-06-01T22:18:54,771           Python recognizes 'skbio.io.tests' as an importable package[^1],
2026-06-01T22:18:54,771           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,772           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,773           package, please make sure that 'skbio.io.tests' is explicitly added
2026-06-01T22:18:54,773           to the `packages` configuration field.

2026-06-01T22:18:54,775           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,775           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,776           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,777           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,778           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,779           If you don't want 'skbio.io.tests' to be distributed and are
2026-06-01T22:18:54,780           already explicitly excluding 'skbio.io.tests' via
2026-06-01T22:18:54,780           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,781           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,781           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,782           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,784           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,785           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,786                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,787                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,787                 directory, all directories are treated like packages.
2026-06-01T22:18:54,788           ********************************************************************************

2026-06-01T22:18:54,789   !!
2026-06-01T22:18:54,789     check.warn(importable)
2026-06-01T22:18:54,790   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:54,790   !!

2026-06-01T22:18:54,791           ********************************************************************************
2026-06-01T22:18:54,791           ############################
2026-06-01T22:18:54,792           # Package would be ignored #
2026-06-01T22:18:54,792           ############################
2026-06-01T22:18:54,792           Python recognizes 'skbio.io.tests.data' as an importable package[^1],
2026-06-01T22:18:54,793           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,793           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,794           package, please make sure that 'skbio.io.tests.data' is explicitly added
2026-06-01T22:18:54,794           to the `packages` configuration field.

2026-06-01T22:18:54,795           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,795           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,796           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,797           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,798           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,798           If you don't want 'skbio.io.tests.data' to be distributed and are
2026-06-01T22:18:54,799           already explicitly excluding 'skbio.io.tests.data' via
2026-06-01T22:18:54,799           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,800           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,800           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,801           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,803           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,804           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,805                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,805                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,806                 directory, all directories are treated like packages.
2026-06-01T22:18:54,807           ********************************************************************************

2026-06-01T22:18:54,808   !!
2026-06-01T22:18:54,808     check.warn(importable)
2026-06-01T22:18:54,809   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.metadata' is absent from the `packages` configuration.
2026-06-01T22:18:54,809   !!

2026-06-01T22:18:54,810           ********************************************************************************
2026-06-01T22:18:54,811           ############################
2026-06-01T22:18:54,811           # Package would be ignored #
2026-06-01T22:18:54,812           ############################
2026-06-01T22:18:54,812           Python recognizes 'skbio.metadata' as an importable package[^1],
2026-06-01T22:18:54,813           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,814           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,814           package, please make sure that 'skbio.metadata' is explicitly added
2026-06-01T22:18:54,815           to the `packages` configuration field.

2026-06-01T22:18:54,816           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,817           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,817           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,818           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,818           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,819           If you don't want 'skbio.metadata' to be distributed and are
2026-06-01T22:18:54,820           already explicitly excluding 'skbio.metadata' via
2026-06-01T22:18:54,820           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,820           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,821           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,821           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,822           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,823           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,824                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,824                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,825                 directory, all directories are treated like packages.
2026-06-01T22:18:54,825           ********************************************************************************

2026-06-01T22:18:54,826   !!
2026-06-01T22:18:54,826     check.warn(importable)
2026-06-01T22:18:54,827   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.metadata.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,827   !!

2026-06-01T22:18:54,828           ********************************************************************************
2026-06-01T22:18:54,829           ############################
2026-06-01T22:18:54,830           # Package would be ignored #
2026-06-01T22:18:54,830           ############################
2026-06-01T22:18:54,831           Python recognizes 'skbio.metadata.tests' as an importable package[^1],
2026-06-01T22:18:54,831           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,832           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,833           package, please make sure that 'skbio.metadata.tests' is explicitly added
2026-06-01T22:18:54,833           to the `packages` configuration field.

2026-06-01T22:18:54,834           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,834           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,835           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,836           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,837           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,838           If you don't want 'skbio.metadata.tests' to be distributed and are
2026-06-01T22:18:54,838           already explicitly excluding 'skbio.metadata.tests' via
2026-06-01T22:18:54,839           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,839           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,840           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,841           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,842           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,844           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,844                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,845                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,845                 directory, all directories are treated like packages.
2026-06-01T22:18:54,845           ********************************************************************************

2026-06-01T22:18:54,846   !!
2026-06-01T22:18:54,846     check.warn(importable)
2026-06-01T22:18:54,847   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.metadata.tests.data.invalid' is absent from the `packages` configuration.
2026-06-01T22:18:54,847   !!

2026-06-01T22:18:54,848           ********************************************************************************
2026-06-01T22:18:54,848           ############################
2026-06-01T22:18:54,849           # Package would be ignored #
2026-06-01T22:18:54,849           ############################
2026-06-01T22:18:54,849           Python recognizes 'skbio.metadata.tests.data.invalid' as an importable package[^1],
2026-06-01T22:18:54,850           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,850           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,851           package, please make sure that 'skbio.metadata.tests.data.invalid' is explicitly added
2026-06-01T22:18:54,851           to the `packages` configuration field.

2026-06-01T22:18:54,852           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,853           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,853           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,854           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,856           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,857           If you don't want 'skbio.metadata.tests.data.invalid' to be distributed and are
2026-06-01T22:18:54,858           already explicitly excluding 'skbio.metadata.tests.data.invalid' via
2026-06-01T22:18:54,858           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,859           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,860           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,861           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,862           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,863           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,864                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,864                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,865                 directory, all directories are treated like packages.
2026-06-01T22:18:54,865           ********************************************************************************

2026-06-01T22:18:54,866   !!
2026-06-01T22:18:54,867     check.warn(importable)
2026-06-01T22:18:54,867   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.metadata.tests.data.valid' is absent from the `packages` configuration.
2026-06-01T22:18:54,868   !!

2026-06-01T22:18:54,869           ********************************************************************************
2026-06-01T22:18:54,869           ############################
2026-06-01T22:18:54,870           # Package would be ignored #
2026-06-01T22:18:54,871           ############################
2026-06-01T22:18:54,871           Python recognizes 'skbio.metadata.tests.data.valid' as an importable package[^1],
2026-06-01T22:18:54,872           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,873           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,873           package, please make sure that 'skbio.metadata.tests.data.valid' is explicitly added
2026-06-01T22:18:54,874           to the `packages` configuration field.

2026-06-01T22:18:54,874           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,875           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,875           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,876           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,877           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,877           If you don't want 'skbio.metadata.tests.data.valid' to be distributed and are
2026-06-01T22:18:54,878           already explicitly excluding 'skbio.metadata.tests.data.valid' via
2026-06-01T22:18:54,878           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,878           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,879           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,880           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,880           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,882           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,883                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,883                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,884                 directory, all directories are treated like packages.
2026-06-01T22:18:54,884           ********************************************************************************

2026-06-01T22:18:54,885   !!
2026-06-01T22:18:54,886     check.warn(importable)
2026-06-01T22:18:54,886   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.sequence' is absent from the `packages` configuration.
2026-06-01T22:18:54,887   !!

2026-06-01T22:18:54,888           ********************************************************************************
2026-06-01T22:18:54,889           ############################
2026-06-01T22:18:54,889           # Package would be ignored #
2026-06-01T22:18:54,890           ############################
2026-06-01T22:18:54,890           Python recognizes 'skbio.sequence' as an importable package[^1],
2026-06-01T22:18:54,891           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,892           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,892           package, please make sure that 'skbio.sequence' is explicitly added
2026-06-01T22:18:54,893           to the `packages` configuration field.

2026-06-01T22:18:54,894           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,894           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,895           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,896           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,897           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,898           If you don't want 'skbio.sequence' to be distributed and are
2026-06-01T22:18:54,898           already explicitly excluding 'skbio.sequence' via
2026-06-01T22:18:54,899           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,900           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,901           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,901           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,902           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,903           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,903                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,904                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,904                 directory, all directories are treated like packages.
2026-06-01T22:18:54,905           ********************************************************************************

2026-06-01T22:18:54,905   !!
2026-06-01T22:18:54,906     check.warn(importable)
2026-06-01T22:18:54,906   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.sequence.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,906   !!

2026-06-01T22:18:54,907           ********************************************************************************
2026-06-01T22:18:54,908           ############################
2026-06-01T22:18:54,908           # Package would be ignored #
2026-06-01T22:18:54,908           ############################
2026-06-01T22:18:54,909           Python recognizes 'skbio.sequence.tests' as an importable package[^1],
2026-06-01T22:18:54,909           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,910           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,911           package, please make sure that 'skbio.sequence.tests' is explicitly added
2026-06-01T22:18:54,911           to the `packages` configuration field.

2026-06-01T22:18:54,913           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,913           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,914           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,915           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,916           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,917           If you don't want 'skbio.sequence.tests' to be distributed and are
2026-06-01T22:18:54,918           already explicitly excluding 'skbio.sequence.tests' via
2026-06-01T22:18:54,918           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,919           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,920           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,920           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,921           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,923           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,923                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,924                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,924                 directory, all directories are treated like packages.
2026-06-01T22:18:54,925           ********************************************************************************

2026-06-01T22:18:54,926   !!
2026-06-01T22:18:54,927     check.warn(importable)
2026-06-01T22:18:54,927   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats' is absent from the `packages` configuration.
2026-06-01T22:18:54,928   !!

2026-06-01T22:18:54,929           ********************************************************************************
2026-06-01T22:18:54,929           ############################
2026-06-01T22:18:54,930           # Package would be ignored #
2026-06-01T22:18:54,930           ############################
2026-06-01T22:18:54,930           Python recognizes 'skbio.stats' as an importable package[^1],
2026-06-01T22:18:54,931           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,931           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,932           package, please make sure that 'skbio.stats' is explicitly added
2026-06-01T22:18:54,932           to the `packages` configuration field.

2026-06-01T22:18:54,933           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,933           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,934           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,935           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,936           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,937           If you don't want 'skbio.stats' to be distributed and are
2026-06-01T22:18:54,937           already explicitly excluding 'skbio.stats' via
2026-06-01T22:18:54,937           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,938           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,938           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,939           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,940           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,942           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,943                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,943                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,944                 directory, all directories are treated like packages.
2026-06-01T22:18:54,944           ********************************************************************************

2026-06-01T22:18:54,945   !!
2026-06-01T22:18:54,946     check.warn(importable)
2026-06-01T22:18:54,947   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.composition' is absent from the `packages` configuration.
2026-06-01T22:18:54,947   !!

2026-06-01T22:18:54,948           ********************************************************************************
2026-06-01T22:18:54,949           ############################
2026-06-01T22:18:54,949           # Package would be ignored #
2026-06-01T22:18:54,950           ############################
2026-06-01T22:18:54,950           Python recognizes 'skbio.stats.composition' as an importable package[^1],
2026-06-01T22:18:54,951           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,952           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,952           package, please make sure that 'skbio.stats.composition' is explicitly added
2026-06-01T22:18:54,953           to the `packages` configuration field.

2026-06-01T22:18:54,954           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,954           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,955           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,956           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,957           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,958           If you don't want 'skbio.stats.composition' to be distributed and are
2026-06-01T22:18:54,959           already explicitly excluding 'skbio.stats.composition' via
2026-06-01T22:18:54,959           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,959           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,960           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,960           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,961           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,962           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,963                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,963                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,963                 directory, all directories are treated like packages.
2026-06-01T22:18:54,964           ********************************************************************************

2026-06-01T22:18:54,965   !!
2026-06-01T22:18:54,965     check.warn(importable)
2026-06-01T22:18:54,965   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.composition.tests' is absent from the `packages` configuration.
2026-06-01T22:18:54,966   !!

2026-06-01T22:18:54,967           ********************************************************************************
2026-06-01T22:18:54,967           ############################
2026-06-01T22:18:54,968           # Package would be ignored #
2026-06-01T22:18:54,968           ############################
2026-06-01T22:18:54,969           Python recognizes 'skbio.stats.composition.tests' as an importable package[^1],
2026-06-01T22:18:54,969           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,971           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,971           package, please make sure that 'skbio.stats.composition.tests' is explicitly added
2026-06-01T22:18:54,972           to the `packages` configuration field.

2026-06-01T22:18:54,973           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,973           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,974           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,975           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,976           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,977           If you don't want 'skbio.stats.composition.tests' to be distributed and are
2026-06-01T22:18:54,978           already explicitly excluding 'skbio.stats.composition.tests' via
2026-06-01T22:18:54,978           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:54,978           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:54,979           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:54,980           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:54,981           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:54,983           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:54,983                 even if it does not contain any `.py` files.
2026-06-01T22:18:54,984                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:54,985                 directory, all directories are treated like packages.
2026-06-01T22:18:54,986           ********************************************************************************

2026-06-01T22:18:54,987   !!
2026-06-01T22:18:54,987     check.warn(importable)
2026-06-01T22:18:54,988   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.composition.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:54,988   !!

2026-06-01T22:18:54,989           ********************************************************************************
2026-06-01T22:18:54,989           ############################
2026-06-01T22:18:54,990           # Package would be ignored #
2026-06-01T22:18:54,990           ############################
2026-06-01T22:18:54,991           Python recognizes 'skbio.stats.composition.tests.data' as an importable package[^1],
2026-06-01T22:18:54,991           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:54,992           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:54,993           package, please make sure that 'skbio.stats.composition.tests.data' is explicitly added
2026-06-01T22:18:54,993           to the `packages` configuration field.

2026-06-01T22:18:54,994           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:54,995           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:54,995           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:54,996           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:54,997           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:54,998           If you don't want 'skbio.stats.composition.tests.data' to be distributed and are
2026-06-01T22:18:54,999           already explicitly excluding 'skbio.stats.composition.tests.data' via
2026-06-01T22:18:54,999           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,000           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,000           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,001           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,002           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,004           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,005                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,005                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,006                 directory, all directories are treated like packages.
2026-06-01T22:18:55,007           ********************************************************************************

2026-06-01T22:18:55,008   !!
2026-06-01T22:18:55,008     check.warn(importable)
2026-06-01T22:18:55,009   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.distance' is absent from the `packages` configuration.
2026-06-01T22:18:55,010   !!

2026-06-01T22:18:55,011           ********************************************************************************
2026-06-01T22:18:55,011           ############################
2026-06-01T22:18:55,012           # Package would be ignored #
2026-06-01T22:18:55,013           ############################
2026-06-01T22:18:55,013           Python recognizes 'skbio.stats.distance' as an importable package[^1],
2026-06-01T22:18:55,014           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,015           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,016           package, please make sure that 'skbio.stats.distance' is explicitly added
2026-06-01T22:18:55,017           to the `packages` configuration field.

2026-06-01T22:18:55,018           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,019           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,019           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,020           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,022           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,023           If you don't want 'skbio.stats.distance' to be distributed and are
2026-06-01T22:18:55,023           already explicitly excluding 'skbio.stats.distance' via
2026-06-01T22:18:55,024           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,024           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,025           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,026           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,027           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,028           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,029                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,029                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,030                 directory, all directories are treated like packages.
2026-06-01T22:18:55,030           ********************************************************************************

2026-06-01T22:18:55,032   !!
2026-06-01T22:18:55,032     check.warn(importable)
2026-06-01T22:18:55,033   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.distance.tests' is absent from the `packages` configuration.
2026-06-01T22:18:55,034   !!

2026-06-01T22:18:55,035           ********************************************************************************
2026-06-01T22:18:55,036           ############################
2026-06-01T22:18:55,037           # Package would be ignored #
2026-06-01T22:18:55,038           ############################
2026-06-01T22:18:55,038           Python recognizes 'skbio.stats.distance.tests' as an importable package[^1],
2026-06-01T22:18:55,039           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,040           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,041           package, please make sure that 'skbio.stats.distance.tests' is explicitly added
2026-06-01T22:18:55,042           to the `packages` configuration field.

2026-06-01T22:18:55,043           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,043           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,044           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,045           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,046           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,048           If you don't want 'skbio.stats.distance.tests' to be distributed and are
2026-06-01T22:18:55,048           already explicitly excluding 'skbio.stats.distance.tests' via
2026-06-01T22:18:55,049           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,050           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,050           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,052           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,053           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,055           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,055                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,056                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,056                 directory, all directories are treated like packages.
2026-06-01T22:18:55,057           ********************************************************************************

2026-06-01T22:18:55,058   !!
2026-06-01T22:18:55,058     check.warn(importable)
2026-06-01T22:18:55,059   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.distance.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:55,059   !!

2026-06-01T22:18:55,060           ********************************************************************************
2026-06-01T22:18:55,061           ############################
2026-06-01T22:18:55,061           # Package would be ignored #
2026-06-01T22:18:55,062           ############################
2026-06-01T22:18:55,063           Python recognizes 'skbio.stats.distance.tests.data' as an importable package[^1],
2026-06-01T22:18:55,063           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,064           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,065           package, please make sure that 'skbio.stats.distance.tests.data' is explicitly added
2026-06-01T22:18:55,065           to the `packages` configuration field.

2026-06-01T22:18:55,066           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,067           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,068           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,069           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,071           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,072           If you don't want 'skbio.stats.distance.tests.data' to be distributed and are
2026-06-01T22:18:55,073           already explicitly excluding 'skbio.stats.distance.tests.data' via
2026-06-01T22:18:55,073           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,074           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,075           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,076           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,077           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,079           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,080                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,081                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,081                 directory, all directories are treated like packages.
2026-06-01T22:18:55,082           ********************************************************************************

2026-06-01T22:18:55,083   !!
2026-06-01T22:18:55,084     check.warn(importable)
2026-06-01T22:18:55,085   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.evolve' is absent from the `packages` configuration.
2026-06-01T22:18:55,085   !!

2026-06-01T22:18:55,086           ********************************************************************************
2026-06-01T22:18:55,087           ############################
2026-06-01T22:18:55,088           # Package would be ignored #
2026-06-01T22:18:55,089           ############################
2026-06-01T22:18:55,089           Python recognizes 'skbio.stats.evolve' as an importable package[^1],
2026-06-01T22:18:55,090           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,090           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,091           package, please make sure that 'skbio.stats.evolve' is explicitly added
2026-06-01T22:18:55,091           to the `packages` configuration field.

2026-06-01T22:18:55,092           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,093           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,100           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,108           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,109           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,110           If you don't want 'skbio.stats.evolve' to be distributed and are
2026-06-01T22:18:55,111           already explicitly excluding 'skbio.stats.evolve' via
2026-06-01T22:18:55,111           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,112           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,112           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,113           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,115           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,116           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,117                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,118                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,118                 directory, all directories are treated like packages.
2026-06-01T22:18:55,119           ********************************************************************************

2026-06-01T22:18:55,120   !!
2026-06-01T22:18:55,121     check.warn(importable)
2026-06-01T22:18:55,122   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.evolve.tests' is absent from the `packages` configuration.
2026-06-01T22:18:55,122   !!

2026-06-01T22:18:55,123           ********************************************************************************
2026-06-01T22:18:55,124           ############################
2026-06-01T22:18:55,124           # Package would be ignored #
2026-06-01T22:18:55,125           ############################
2026-06-01T22:18:55,126           Python recognizes 'skbio.stats.evolve.tests' as an importable package[^1],
2026-06-01T22:18:55,126           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,127           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,128           package, please make sure that 'skbio.stats.evolve.tests' is explicitly added
2026-06-01T22:18:55,129           to the `packages` configuration field.

2026-06-01T22:18:55,130           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,130           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,131           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,132           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,133           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,134           If you don't want 'skbio.stats.evolve.tests' to be distributed and are
2026-06-01T22:18:55,135           already explicitly excluding 'skbio.stats.evolve.tests' via
2026-06-01T22:18:55,136           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,136           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,137           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,138           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,138           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,140           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,141                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,141                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,142                 directory, all directories are treated like packages.
2026-06-01T22:18:55,142           ********************************************************************************

2026-06-01T22:18:55,143   !!
2026-06-01T22:18:55,144     check.warn(importable)
2026-06-01T22:18:55,144   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.ordination' is absent from the `packages` configuration.
2026-06-01T22:18:55,145   !!

2026-06-01T22:18:55,145           ********************************************************************************
2026-06-01T22:18:55,146           ############################
2026-06-01T22:18:55,146           # Package would be ignored #
2026-06-01T22:18:55,147           ############################
2026-06-01T22:18:55,147           Python recognizes 'skbio.stats.ordination' as an importable package[^1],
2026-06-01T22:18:55,148           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,149           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,149           package, please make sure that 'skbio.stats.ordination' is explicitly added
2026-06-01T22:18:55,150           to the `packages` configuration field.

2026-06-01T22:18:55,151           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,151           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,152           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,153           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,154           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,155           If you don't want 'skbio.stats.ordination' to be distributed and are
2026-06-01T22:18:55,156           already explicitly excluding 'skbio.stats.ordination' via
2026-06-01T22:18:55,156           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,157           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,158           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,159           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,161           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,162           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,163                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,164                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,165                 directory, all directories are treated like packages.
2026-06-01T22:18:55,165           ********************************************************************************

2026-06-01T22:18:55,166   !!
2026-06-01T22:18:55,167     check.warn(importable)
2026-06-01T22:18:55,168   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.ordination.tests' is absent from the `packages` configuration.
2026-06-01T22:18:55,168   !!

2026-06-01T22:18:55,169           ********************************************************************************
2026-06-01T22:18:55,170           ############################
2026-06-01T22:18:55,170           # Package would be ignored #
2026-06-01T22:18:55,173           ############################
2026-06-01T22:18:55,174           Python recognizes 'skbio.stats.ordination.tests' as an importable package[^1],
2026-06-01T22:18:55,174           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,175           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,176           package, please make sure that 'skbio.stats.ordination.tests' is explicitly added
2026-06-01T22:18:55,177           to the `packages` configuration field.

2026-06-01T22:18:55,178           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,178           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,179           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,180           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,181           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,182           If you don't want 'skbio.stats.ordination.tests' to be distributed and are
2026-06-01T22:18:55,182           already explicitly excluding 'skbio.stats.ordination.tests' via
2026-06-01T22:18:55,183           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,183           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,184           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,185           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,186           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,187           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,188                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,189                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,189                 directory, all directories are treated like packages.
2026-06-01T22:18:55,189           ********************************************************************************

2026-06-01T22:18:55,190   !!
2026-06-01T22:18:55,191     check.warn(importable)
2026-06-01T22:18:55,192   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.ordination.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:55,192   !!

2026-06-01T22:18:55,193           ********************************************************************************
2026-06-01T22:18:55,194           ############################
2026-06-01T22:18:55,194           # Package would be ignored #
2026-06-01T22:18:55,195           ############################
2026-06-01T22:18:55,195           Python recognizes 'skbio.stats.ordination.tests.data' as an importable package[^1],
2026-06-01T22:18:55,196           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,197           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,197           package, please make sure that 'skbio.stats.ordination.tests.data' is explicitly added
2026-06-01T22:18:55,198           to the `packages` configuration field.

2026-06-01T22:18:55,199           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,200           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,200           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,201           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,202           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,203           If you don't want 'skbio.stats.ordination.tests.data' to be distributed and are
2026-06-01T22:18:55,204           already explicitly excluding 'skbio.stats.ordination.tests.data' via
2026-06-01T22:18:55,204           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,204           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,205           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,206           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,207           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,208           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,209                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,209                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,210                 directory, all directories are treated like packages.
2026-06-01T22:18:55,210           ********************************************************************************

2026-06-01T22:18:55,211   !!
2026-06-01T22:18:55,211     check.warn(importable)
2026-06-01T22:18:55,212   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.ordination.tests.data.cf' is absent from the `packages` configuration.
2026-06-01T22:18:55,213   !!

2026-06-01T22:18:55,213           ********************************************************************************
2026-06-01T22:18:55,214           ############################
2026-06-01T22:18:55,215           # Package would be ignored #
2026-06-01T22:18:55,215           ############################
2026-06-01T22:18:55,215           Python recognizes 'skbio.stats.ordination.tests.data.cf' as an importable package[^1],
2026-06-01T22:18:55,216           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,217           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,218           package, please make sure that 'skbio.stats.ordination.tests.data.cf' is explicitly added
2026-06-01T22:18:55,218           to the `packages` configuration field.

2026-06-01T22:18:55,219           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,220           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,220           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,221           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,222           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,224           If you don't want 'skbio.stats.ordination.tests.data.cf' to be distributed and are
2026-06-01T22:18:55,224           already explicitly excluding 'skbio.stats.ordination.tests.data.cf' via
2026-06-01T22:18:55,225           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,225           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,226           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,227           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,228           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,235           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,236                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,237                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,237                 directory, all directories are treated like packages.
2026-06-01T22:18:55,238           ********************************************************************************

2026-06-01T22:18:55,239   !!
2026-06-01T22:18:55,240     check.warn(importable)
2026-06-01T22:18:55,240   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.ordination.tests.data.soils' is absent from the `packages` configuration.
2026-06-01T22:18:55,242   !!

2026-06-01T22:18:55,243           ********************************************************************************
2026-06-01T22:18:55,244           ############################
2026-06-01T22:18:55,245           # Package would be ignored #
2026-06-01T22:18:55,246           ############################
2026-06-01T22:18:55,247           Python recognizes 'skbio.stats.ordination.tests.data.soils' as an importable package[^1],
2026-06-01T22:18:55,247           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,249           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,250           package, please make sure that 'skbio.stats.ordination.tests.data.soils' is explicitly added
2026-06-01T22:18:55,251           to the `packages` configuration field.

2026-06-01T22:18:55,253           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,254           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,255           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,256           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,258           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,260           If you don't want 'skbio.stats.ordination.tests.data.soils' to be distributed and are
2026-06-01T22:18:55,261           already explicitly excluding 'skbio.stats.ordination.tests.data.soils' via
2026-06-01T22:18:55,261           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,262           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,263           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,264           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,266           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,268           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,269                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,270                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,271                 directory, all directories are treated like packages.
2026-06-01T22:18:55,272           ********************************************************************************

2026-06-01T22:18:55,273   !!
2026-06-01T22:18:55,274     check.warn(importable)
2026-06-01T22:18:55,275   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.tests' is absent from the `packages` configuration.
2026-06-01T22:18:55,275   !!

2026-06-01T22:18:55,277           ********************************************************************************
2026-06-01T22:18:55,278           ############################
2026-06-01T22:18:55,279           # Package would be ignored #
2026-06-01T22:18:55,279           ############################
2026-06-01T22:18:55,280           Python recognizes 'skbio.stats.tests' as an importable package[^1],
2026-06-01T22:18:55,281           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,283           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,283           package, please make sure that 'skbio.stats.tests' is explicitly added
2026-06-01T22:18:55,284           to the `packages` configuration field.

2026-06-01T22:18:55,286           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,287           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,287           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,289           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,290           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,292           If you don't want 'skbio.stats.tests' to be distributed and are
2026-06-01T22:18:55,292           already explicitly excluding 'skbio.stats.tests' via
2026-06-01T22:18:55,293           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,294           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,295           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,296           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,298           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,300           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,301                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,302                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,302                 directory, all directories are treated like packages.
2026-06-01T22:18:55,303           ********************************************************************************

2026-06-01T22:18:55,304   !!
2026-06-01T22:18:55,305     check.warn(importable)
2026-06-01T22:18:55,305   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:55,307   !!

2026-06-01T22:18:55,308           ********************************************************************************
2026-06-01T22:18:55,309           ############################
2026-06-01T22:18:55,309           # Package would be ignored #
2026-06-01T22:18:55,310           ############################
2026-06-01T22:18:55,311           Python recognizes 'skbio.stats.tests.data' as an importable package[^1],
2026-06-01T22:18:55,312           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,313           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,314           package, please make sure that 'skbio.stats.tests.data' is explicitly added
2026-06-01T22:18:55,315           to the `packages` configuration field.

2026-06-01T22:18:55,316           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,317           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,318           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,319           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,320           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,322           If you don't want 'skbio.stats.tests.data' to be distributed and are
2026-06-01T22:18:55,323           already explicitly excluding 'skbio.stats.tests.data' via
2026-06-01T22:18:55,323           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,324           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,324           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,325           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,326           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,327           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,328                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,328                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,329                 directory, all directories are treated like packages.
2026-06-01T22:18:55,330           ********************************************************************************

2026-06-01T22:18:55,330   !!
2026-06-01T22:18:55,331     check.warn(importable)
2026-06-01T22:18:55,331   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.table' is absent from the `packages` configuration.
2026-06-01T22:18:55,332   !!

2026-06-01T22:18:55,333           ********************************************************************************
2026-06-01T22:18:55,333           ############################
2026-06-01T22:18:55,334           # Package would be ignored #
2026-06-01T22:18:55,334           ############################
2026-06-01T22:18:55,335           Python recognizes 'skbio.table' as an importable package[^1],
2026-06-01T22:18:55,335           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,337           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,337           package, please make sure that 'skbio.table' is explicitly added
2026-06-01T22:18:55,338           to the `packages` configuration field.

2026-06-01T22:18:55,339           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,339           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,340           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,341           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,342           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,343           If you don't want 'skbio.table' to be distributed and are
2026-06-01T22:18:55,344           already explicitly excluding 'skbio.table' via
2026-06-01T22:18:55,344           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,345           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,345           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,346           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,347           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,349           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,350                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,350                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,351                 directory, all directories are treated like packages.
2026-06-01T22:18:55,351           ********************************************************************************

2026-06-01T22:18:55,353   !!
2026-06-01T22:18:55,353     check.warn(importable)
2026-06-01T22:18:55,354   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.table.tests' is absent from the `packages` configuration.
2026-06-01T22:18:55,355   !!

2026-06-01T22:18:55,356           ********************************************************************************
2026-06-01T22:18:55,356           ############################
2026-06-01T22:18:55,357           # Package would be ignored #
2026-06-01T22:18:55,358           ############################
2026-06-01T22:18:55,358           Python recognizes 'skbio.table.tests' as an importable package[^1],
2026-06-01T22:18:55,359           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,360           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,360           package, please make sure that 'skbio.table.tests' is explicitly added
2026-06-01T22:18:55,361           to the `packages` configuration field.

2026-06-01T22:18:55,362           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,362           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,363           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,364           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,365           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,366           If you don't want 'skbio.table.tests' to be distributed and are
2026-06-01T22:18:55,366           already explicitly excluding 'skbio.table.tests' via
2026-06-01T22:18:55,367           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,367           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,368           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,369           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,370           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,372           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,372                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,373                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,373                 directory, all directories are treated like packages.
2026-06-01T22:18:55,374           ********************************************************************************

2026-06-01T22:18:55,375   !!
2026-06-01T22:18:55,376     check.warn(importable)
2026-06-01T22:18:55,377   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.tests' is absent from the `packages` configuration.
2026-06-01T22:18:55,377   !!

2026-06-01T22:18:55,379           ********************************************************************************
2026-06-01T22:18:55,380           ############################
2026-06-01T22:18:55,380           # Package would be ignored #
2026-06-01T22:18:55,381           ############################
2026-06-01T22:18:55,382           Python recognizes 'skbio.tests' as an importable package[^1],
2026-06-01T22:18:55,382           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,384           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,385           package, please make sure that 'skbio.tests' is explicitly added
2026-06-01T22:18:55,385           to the `packages` configuration field.

2026-06-01T22:18:55,388           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,388           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,389           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,391           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,394           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,398           If you don't want 'skbio.tests' to be distributed and are
2026-06-01T22:18:55,399           already explicitly excluding 'skbio.tests' via
2026-06-01T22:18:55,399           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,400           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,400           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,401           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,402           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,404           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,404                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,405                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,405                 directory, all directories are treated like packages.
2026-06-01T22:18:55,406           ********************************************************************************

2026-06-01T22:18:55,407   !!
2026-06-01T22:18:55,407     check.warn(importable)
2026-06-01T22:18:55,408   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.tree' is absent from the `packages` configuration.
2026-06-01T22:18:55,408   !!

2026-06-01T22:18:55,409           ********************************************************************************
2026-06-01T22:18:55,410           ############################
2026-06-01T22:18:55,410           # Package would be ignored #
2026-06-01T22:18:55,411           ############################
2026-06-01T22:18:55,412           Python recognizes 'skbio.tree' as an importable package[^1],
2026-06-01T22:18:55,412           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,413           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,414           package, please make sure that 'skbio.tree' is explicitly added
2026-06-01T22:18:55,414           to the `packages` configuration field.

2026-06-01T22:18:55,416           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,416           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,417           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,418           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,419           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,421           If you don't want 'skbio.tree' to be distributed and are
2026-06-01T22:18:55,421           already explicitly excluding 'skbio.tree' via
2026-06-01T22:18:55,422           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,422           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,423           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,424           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,425           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,427           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,428                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,428                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,429                 directory, all directories are treated like packages.
2026-06-01T22:18:55,429           ********************************************************************************

2026-06-01T22:18:55,430   !!
2026-06-01T22:18:55,431     check.warn(importable)
2026-06-01T22:18:55,431   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.tree.tests' is absent from the `packages` configuration.
2026-06-01T22:18:55,432   !!

2026-06-01T22:18:55,433           ********************************************************************************
2026-06-01T22:18:55,433           ############################
2026-06-01T22:18:55,433           # Package would be ignored #
2026-06-01T22:18:55,434           ############################
2026-06-01T22:18:55,434           Python recognizes 'skbio.tree.tests' as an importable package[^1],
2026-06-01T22:18:55,435           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,436           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,436           package, please make sure that 'skbio.tree.tests' is explicitly added
2026-06-01T22:18:55,437           to the `packages` configuration field.

2026-06-01T22:18:55,438           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,438           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,439           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,440           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,441           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,442           If you don't want 'skbio.tree.tests' to be distributed and are
2026-06-01T22:18:55,442           already explicitly excluding 'skbio.tree.tests' via
2026-06-01T22:18:55,443           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,443           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,444           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,445           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,446           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,448           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,448                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,449                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,449                 directory, all directories are treated like packages.
2026-06-01T22:18:55,450           ********************************************************************************

2026-06-01T22:18:55,451   !!
2026-06-01T22:18:55,452     check.warn(importable)
2026-06-01T22:18:55,452   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.tree.tests.data' is absent from the `packages` configuration.
2026-06-01T22:18:55,453   !!

2026-06-01T22:18:55,454           ********************************************************************************
2026-06-01T22:18:55,455           ############################
2026-06-01T22:18:55,456           # Package would be ignored #
2026-06-01T22:18:55,456           ############################
2026-06-01T22:18:55,457           Python recognizes 'skbio.tree.tests.data' as an importable package[^1],
2026-06-01T22:18:55,458           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,459           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,460           package, please make sure that 'skbio.tree.tests.data' is explicitly added
2026-06-01T22:18:55,461           to the `packages` configuration field.

2026-06-01T22:18:55,462           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,463           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,464           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,465           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,466           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,467           If you don't want 'skbio.tree.tests.data' to be distributed and are
2026-06-01T22:18:55,468           already explicitly excluding 'skbio.tree.tests.data' via
2026-06-01T22:18:55,468           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,469           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,469           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,470           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,471           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,473           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,474                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,474                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,475                 directory, all directories are treated like packages.
2026-06-01T22:18:55,475           ********************************************************************************

2026-06-01T22:18:55,476   !!
2026-06-01T22:18:55,478     check.warn(importable)
2026-06-01T22:18:55,478   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.util' is absent from the `packages` configuration.
2026-06-01T22:18:55,479   !!

2026-06-01T22:18:55,480           ********************************************************************************
2026-06-01T22:18:55,480           ############################
2026-06-01T22:18:55,481           # Package would be ignored #
2026-06-01T22:18:55,482           ############################
2026-06-01T22:18:55,482           Python recognizes 'skbio.util' as an importable package[^1],
2026-06-01T22:18:55,483           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,486           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,487           package, please make sure that 'skbio.util' is explicitly added
2026-06-01T22:18:55,488           to the `packages` configuration field.

2026-06-01T22:18:55,489           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,491           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,492           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,494           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,496           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,497           If you don't want 'skbio.util' to be distributed and are
2026-06-01T22:18:55,498           already explicitly excluding 'skbio.util' via
2026-06-01T22:18:55,498           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,499           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,501           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,502           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,503           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,506           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,506                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,507                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,508                 directory, all directories are treated like packages.
2026-06-01T22:18:55,508           ********************************************************************************

2026-06-01T22:18:55,510   !!
2026-06-01T22:18:55,510     check.warn(importable)
2026-06-01T22:18:55,511   /tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.util.tests' is absent from the `packages` configuration.
2026-06-01T22:18:55,511   !!

2026-06-01T22:18:55,512           ********************************************************************************
2026-06-01T22:18:55,513           ############################
2026-06-01T22:18:55,513           # Package would be ignored #
2026-06-01T22:18:55,514           ############################
2026-06-01T22:18:55,514           Python recognizes 'skbio.util.tests' as an importable package[^1],
2026-06-01T22:18:55,515           but it is absent from setuptools' `packages` configuration.

2026-06-01T22:18:55,516           This leads to an ambiguous overall configuration. If you want to distribute this
2026-06-01T22:18:55,516           package, please make sure that 'skbio.util.tests' is explicitly added
2026-06-01T22:18:55,516           to the `packages` configuration field.

2026-06-01T22:18:55,517           Alternatively, you can also rely on setuptools' discovery methods
2026-06-01T22:18:55,518           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-06-01T22:18:55,519           instead of `find_packages(...)`/`find:`).

2026-06-01T22:18:55,519           You can read more about "package discovery" on setuptools documentation page:

2026-06-01T22:18:55,521           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-06-01T22:18:55,523           If you don't want 'skbio.util.tests' to be distributed and are
2026-06-01T22:18:55,524           already explicitly excluding 'skbio.util.tests' via
2026-06-01T22:18:55,525           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-06-01T22:18:55,526           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-06-01T22:18:55,527           combination with a more fine grained `package-data` configuration.

2026-06-01T22:18:55,528           You can read more about "package data files" on setuptools documentation page:

2026-06-01T22:18:55,529           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-06-01T22:18:55,531           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-06-01T22:18:55,531                 even if it does not contain any `.py` files.
2026-06-01T22:18:55,532                 On the other hand, currently there is no concept of package data
2026-06-01T22:18:55,533                 directory, all directories are treated like packages.
2026-06-01T22:18:55,533           ********************************************************************************

2026-06-01T22:18:55,534   !!
2026-06-01T22:18:55,535     check.warn(importable)
2026-06-01T22:18:55,536   creating build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,536   copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,537   copying skbio/alignment/_cutils.c -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,537   copying skbio/alignment/_cutils.pyx -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,538   copying skbio/alignment/_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,539   copying skbio/alignment/_indexing.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,540   copying skbio/alignment/_pair.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,540   copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,541   copying skbio/alignment/_path.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,542   copying skbio/alignment/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,542   copying skbio/alignment/_score.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,543   copying skbio/alignment/_tabular_msa.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,544   copying skbio/alignment/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:18:55,544   creating build/lib.linux-armv7l-cpython-311/skbio/alignment/tests
2026-06-01T22:18:55,545   copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests
2026-06-01T22:18:55,545   copying skbio/alignment/tests/test_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests
2026-06-01T22:18:55,545   copying skbio/alignment/tests/test_pair.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests
2026-06-01T22:18:55,546   copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests
2026-06-01T22:18:55,546   copying skbio/alignment/tests/test_path.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests
2026-06-01T22:18:55,547   copying skbio/alignment/tests/test_score.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests
2026-06-01T22:18:55,547   copying skbio/alignment/tests/test_tabular_msa.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests
2026-06-01T22:18:55,548   copying skbio/alignment/tests/test_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests
2026-06-01T22:18:55,549   creating build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data
2026-06-01T22:18:55,550   copying skbio/alignment/tests/data/16s.frn -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data
2026-06-01T22:18:55,550   copying skbio/alignment/tests/data/il6.nucl.aln -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data
2026-06-01T22:18:55,551   copying skbio/alignment/tests/data/il6.prot.aln -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data
2026-06-01T22:18:55,551   copying skbio/alignment/tests/data/insulin.faa -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data
2026-06-01T22:18:55,552   copying skbio/alignment/tests/data/tp53.nucl.aln -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data
2026-06-01T22:18:55,553   copying skbio/alignment/tests/data/tp53.prot.aln -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data
2026-06-01T22:18:55,553   creating build/lib.linux-armv7l-cpython-311/skbio/binaries
2026-06-01T22:18:55,554   copying skbio/binaries/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries
2026-06-01T22:18:55,554   copying skbio/binaries/_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries
2026-06-01T22:18:55,555   copying skbio/binaries/_ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries
2026-06-01T22:18:55,555   copying skbio/binaries/_util.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries
2026-06-01T22:18:55,556   creating build/lib.linux-armv7l-cpython-311/skbio/binaries/tests
2026-06-01T22:18:55,557   copying skbio/binaries/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries/tests
2026-06-01T22:18:55,557   creating build/lib.linux-armv7l-cpython-311/skbio/diversity
2026-06-01T22:18:55,558   copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity
2026-06-01T22:18:55,559   copying skbio/diversity/_block.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity
2026-06-01T22:18:55,559   copying skbio/diversity/_driver.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity
2026-06-01T22:18:55,560   copying skbio/diversity/_phylogenetic.c -> build/lib.linux-armv7l-cpython-311/skbio/diversity
2026-06-01T22:18:55,561   copying skbio/diversity/_phylogenetic.pyx -> build/lib.linux-armv7l-cpython-311/skbio/diversity
2026-06-01T22:18:55,561   copying skbio/diversity/_util.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity
2026-06-01T22:18:55,562   creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha
2026-06-01T22:18:55,562   copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha
2026-06-01T22:18:55,563   copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha
2026-06-01T22:18:55,564   copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha
2026-06-01T22:18:55,564   copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha
2026-06-01T22:18:55,565   copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha
2026-06-01T22:18:55,566   copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha
2026-06-01T22:18:55,567   copying skbio/diversity/alpha/_pd.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha
2026-06-01T22:18:55,567   creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests
2026-06-01T22:18:55,568   copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests
2026-06-01T22:18:55,568   copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests
2026-06-01T22:18:55,569   copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests
2026-06-01T22:18:55,569   copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests
2026-06-01T22:18:55,570   copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests
2026-06-01T22:18:55,570   copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests
2026-06-01T22:18:55,571   copying skbio/diversity/alpha/tests/test_pd.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests
2026-06-01T22:18:55,572   creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt
2026-06-01T22:18:55,572   copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt
2026-06-01T22:18:55,573   copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt
2026-06-01T22:18:55,573   copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt
2026-06-01T22:18:55,574   copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt
2026-06-01T22:18:55,574   creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta
2026-06-01T22:18:55,575   copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta
2026-06-01T22:18:55,575   copying skbio/diversity/beta/_unifrac.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta
2026-06-01T22:18:55,576   creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests
2026-06-01T22:18:55,577   copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests
2026-06-01T22:18:55,578   copying skbio/diversity/beta/tests/test_unifrac.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests
2026-06-01T22:18:55,578   creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:18:55,579   copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:18:55,579   copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:18:55,580   copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:18:55,581   copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:18:55,581   copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:18:55,582   copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:18:55,582   creating build/lib.linux-armv7l-cpython-311/skbio/diversity/tests
2026-06-01T22:18:55,583   copying skbio/diversity/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests
2026-06-01T22:18:55,583   copying skbio/diversity/tests/test_block.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests
2026-06-01T22:18:55,584   copying skbio/diversity/tests/test_driver.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests
2026-06-01T22:18:55,584   copying skbio/diversity/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests
2026-06-01T22:18:55,585   creating build/lib.linux-armv7l-cpython-311/skbio/embedding
2026-06-01T22:18:55,585   copying skbio/embedding/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding
2026-06-01T22:18:55,586   copying skbio/embedding/_embedding.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding
2026-06-01T22:18:55,586   copying skbio/embedding/_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding
2026-06-01T22:18:55,587   creating build/lib.linux-armv7l-cpython-311/skbio/embedding/tests
2026-06-01T22:18:55,588   copying skbio/embedding/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests
2026-06-01T22:18:55,588   copying skbio/embedding/tests/test_embedding.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests
2026-06-01T22:18:55,589   copying skbio/embedding/tests/test_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests
2026-06-01T22:18:55,590   creating build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/data
2026-06-01T22:18:55,590   copying skbio/embedding/tests/data/embed1.txt.npy -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/data
2026-06-01T22:18:55,591   creating build/lib.linux-armv7l-cpython-311/skbio/io
2026-06-01T22:18:55,591   copying skbio/io/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io
2026-06-01T22:18:55,592   copying skbio/io/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/io
2026-06-01T22:18:55,592   copying skbio/io/_fileobject.py -> build/lib.linux-armv7l-cpython-311/skbio/io
2026-06-01T22:18:55,593   copying skbio/io/_iosources.py -> build/lib.linux-armv7l-cpython-311/skbio/io
2026-06-01T22:18:55,594   copying skbio/io/_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/io
2026-06-01T22:18:55,594   copying skbio/io/descriptors.py -> build/lib.linux-armv7l-cpython-311/skbio/io
2026-06-01T22:18:55,595   copying skbio/io/registry.py -> build/lib.linux-armv7l-cpython-311/skbio/io
2026-06-01T22:18:55,595   copying skbio/io/util.py -> build/lib.linux-armv7l-cpython-311/skbio/io
2026-06-01T22:18:55,596   creating build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,596   copying skbio/io/format/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,597   copying skbio/io/format/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,597   copying skbio/io/format/_blast.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,598   copying skbio/io/format/_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,599   copying skbio/io/format/binary_dm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,599   copying skbio/io/format/biom.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,600   copying skbio/io/format/blast6.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,600   copying skbio/io/format/blast7.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,601   copying skbio/io/format/clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,601   copying skbio/io/format/embed.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,602   copying skbio/io/format/embl.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,602   copying skbio/io/format/emptyfile.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,603   copying skbio/io/format/fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,603   copying skbio/io/format/fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,604   copying skbio/io/format/genbank.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,605   copying skbio/io/format/gff3.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,605   copying skbio/io/format/lsmat.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,606   copying skbio/io/format/newick.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,606   copying skbio/io/format/ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,607   copying skbio/io/format/phylip.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,607   copying skbio/io/format/phylip_dm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,608   copying skbio/io/format/qseq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,608   copying skbio/io/format/sample_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,609   copying skbio/io/format/stockholm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,610   copying skbio/io/format/taxdump.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format
2026-06-01T22:18:55,610   creating build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,611   copying skbio/io/format/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,611   copying skbio/io/format/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,612   copying skbio/io/format/tests/test_binary_dm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,612   copying skbio/io/format/tests/test_biom.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,613   copying skbio/io/format/tests/test_blast6.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,613   copying skbio/io/format/tests/test_blast7.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,614   copying skbio/io/format/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,614   copying skbio/io/format/tests/test_embed.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,615   copying skbio/io/format/tests/test_embl.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,616   copying skbio/io/format/tests/test_emptyfile.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,616   copying skbio/io/format/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,617   copying skbio/io/format/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,617   copying skbio/io/format/tests/test_genbank.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,618   copying skbio/io/format/tests/test_gff3.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,619   copying skbio/io/format/tests/test_lsmat.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,619   copying skbio/io/format/tests/test_newick.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,620   copying skbio/io/format/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,620   copying skbio/io/format/tests/test_phylip.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,620   copying skbio/io/format/tests/test_phylip_dm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,621   copying skbio/io/format/tests/test_qseq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,621   copying skbio/io/format/tests/test_sample_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,622   copying skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,622   copying skbio/io/format/tests/test_stockholm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,623   copying skbio/io/format/tests/test_taxdump.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests
2026-06-01T22:18:55,623   creating build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,624   copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,624   copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,625   copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,625   copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,626   copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,627   copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,627   copying skbio/io/format/tests/data/blast6_invalid_column_types -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,628   copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,628   copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,629   copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,629   copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,630   copying skbio/io/format/tests/data/blast7_custom_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,630   copying skbio/io/format/tests/data/blast7_custom_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,632   copying skbio/io/format/tests/data/blast7_default_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,635   copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,637   copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,639   copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,642   copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,644   copying skbio/io/format/tests/data/blast7_invalid_gibberish -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,646   copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,648   copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,650   copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,653   copying skbio/io/format/tests/data/embed1.txt.npy -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,659   copying skbio/io/format/tests/data/embed2.txt.npy -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,666   copying skbio/io/format/tests/data/embl_constructed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,669   copying skbio/io/format/tests/data/embl_feature_level_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,671   copying skbio/io/format/tests/data/embl_feature_level_record_no_FT -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,674   copying skbio/io/format/tests/data/embl_multi_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,677   copying skbio/io/format/tests/data/embl_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,680   copying skbio/io/format/tests/data/embl_single_record_lower -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,683   copying skbio/io/format/tests/data/embl_single_record_simple -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,685   copying skbio/io/format/tests/data/embl_single_record_upper -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,688   copying skbio/io/format/tests/data/embl_uniprot_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,690   copying skbio/io/format/tests/data/embl_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,693   copying skbio/io/format/tests/data/empty -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,695   copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,697   copying skbio/io/format/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,699   copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,702   copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,704   copying skbio/io/format/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,707   copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,709   copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,711   copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,714   copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,716   copying skbio/io/format/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,718   copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,720   copying skbio/io/format/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,723   copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,725   copying skbio/io/format/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,727   copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,729   copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,731   copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,733   copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,735   copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,737   copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,739   copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,742   copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,744   copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,746   copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,748   copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,750   copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,752   copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,754   copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,757   copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,759   copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,761   copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,763   copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,765   copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,767   copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,769   copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,772   copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,774   copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,776   copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,778   copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,780   copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,782   copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,784   copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,787   copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,789   copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,791   copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,793   copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,795   copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,797   copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,799   copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,801   copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,803   copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,805   copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,807   copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,809   copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,812   copying skbio/io/format/tests/data/fasta_multi_seq_spaces -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,814   copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,816   copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,818   copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,820   copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,822   copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,825   copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,827   copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,831   copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,834   copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,837   copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,841   copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,844   copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,846   copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,848   copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,850   copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,852   copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,854   copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,856   copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,858   copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,860   copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,862   copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,865   copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,867   copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,870   copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,872   copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,874   copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,876   copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,878   copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,880   copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,882   copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,884   copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,886   copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,889   copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,891   copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,893   copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,895   copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,897   copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,899   copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,901   copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,903   copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,905   copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,907   copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,909   copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,911   copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,914   copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,916   copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,918   copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,920   copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,922   copying skbio/io/format/tests/data/genbank_missing_locus_name -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,924   copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,926   copying skbio/io/format/tests/data/genbank_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,928   copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,930   copying skbio/io/format/tests/data/genbank_single_record_upper -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,933   copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,935   copying skbio/io/format/tests/data/gff3_bad_missing_directive -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,937   copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,939   copying skbio/io/format/tests/data/gff3_dna -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,941   copying skbio/io/format/tests/data/gff3_multi_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,943   copying skbio/io/format/tests/data/gff3_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,946   copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,948   copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,950   copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,952   copying skbio/io/format/tests/data/legacy9_and_blast7_default -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,954   copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,956   copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,958   copying skbio/io/format/tests/data/legacy9_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,960   copying skbio/io/format/tests/data/legacy9_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,962   copying skbio/io/format/tests/data/legacy9_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,964   copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,967   copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,969   copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,972   copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,974   copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,976   copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,978   copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,980   copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,982   copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,985   copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,987   copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,989   copying skbio/io/format/tests/data/ordination_error1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,991   copying skbio/io/format/tests/data/ordination_error10 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,993   copying skbio/io/format/tests/data/ordination_error11 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,996   copying skbio/io/format/tests/data/ordination_error12 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:55,998   copying skbio/io/format/tests/data/ordination_error13 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,000   copying skbio/io/format/tests/data/ordination_error14 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,002   copying skbio/io/format/tests/data/ordination_error15 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,004   copying skbio/io/format/tests/data/ordination_error16 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,007   copying skbio/io/format/tests/data/ordination_error17 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,009   copying skbio/io/format/tests/data/ordination_error18 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,011   copying skbio/io/format/tests/data/ordination_error19 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,013   copying skbio/io/format/tests/data/ordination_error2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,016   copying skbio/io/format/tests/data/ordination_error20 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,018   copying skbio/io/format/tests/data/ordination_error21 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,020   copying skbio/io/format/tests/data/ordination_error22 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,022   copying skbio/io/format/tests/data/ordination_error23 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,024   copying skbio/io/format/tests/data/ordination_error24 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,026   copying skbio/io/format/tests/data/ordination_error3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,028   copying skbio/io/format/tests/data/ordination_error4 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,031   copying skbio/io/format/tests/data/ordination_error5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,033   copying skbio/io/format/tests/data/ordination_error6 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,036   copying skbio/io/format/tests/data/ordination_error7 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,039   copying skbio/io/format/tests/data/ordination_error8 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,041   copying skbio/io/format/tests/data/ordination_error9 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,043   copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,045   copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,048   copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,050   copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,052   copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,054   copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,056   copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,059   copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,061   copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,063   copying skbio/io/format/tests/data/pdb_hits.txt -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,065   copying skbio/io/format/tests/data/phylip_dm_good_simple_strict_square.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,068   copying skbio/io/format/tests/data/phylip_dm_good_simple_strict_square_reader.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,070   copying skbio/io/format/tests/data/phylip_dm_invalid_empty_line_after_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,072   copying skbio/io/format/tests/data/phylip_dm_invalid_empty_line_before_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,074   copying skbio/io/format/tests/data/phylip_dm_invalid_header_too_long.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,076   copying skbio/io/format/tests/data/phylip_dm_invalid_no_dists.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,078   copying skbio/io/format/tests/data/phylip_dm_invalid_no_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,080   copying skbio/io/format/tests/data/phylip_dm_invalid_too_few_columns_sq.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,082   copying skbio/io/format/tests/data/phylip_dm_invalid_too_few_rows.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,084   copying skbio/io/format/tests/data/phylip_dm_invalid_too_many_columns.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,086   copying skbio/io/format/tests/data/phylip_dm_invalid_too_many_rows.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,089   copying skbio/io/format/tests/data/phylip_dm_invalid_wrong_number_dists_lt.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,091   copying skbio/io/format/tests/data/phylip_dm_invalid_zero_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,093   copying skbio/io/format/tests/data/phylip_dm_simple_lt.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,095   copying skbio/io/format/tests/data/phylip_dm_simple_sq.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,097   copying skbio/io/format/tests/data/phylip_dm_sq_invalid_empty_line_after_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,099   copying skbio/io/format/tests/data/phylip_dm_sq_invalid_empty_line_before_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,102   copying skbio/io/format/tests/data/phylip_dm_valid_lt.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,104   copying skbio/io/format/tests/data/phylip_dm_valid_sq.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,106   copying skbio/io/format/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,108   copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,111   copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,113   copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,115   copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,118   copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,120   copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,122   copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,125   copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,127   copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,129   copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,131   copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,134   copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,136   copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,138   copying skbio/io/format/tests/data/phylip_single_seq_relaxed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,140   copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,142   copying skbio/io/format/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,145   copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,147   copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,149   copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,151   copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,154   copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,156   copying skbio/io/format/tests/data/prot.emb -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,163   copying skbio/io/format/tests/data/prot_vec.emb -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,166   copying skbio/io/format/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,168   copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,170   copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,172   copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,175   copying skbio/io/format/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,177   copying skbio/io/format/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,180   copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,182   copying skbio/io/format/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,184   copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,186   copying skbio/io/format/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,188   copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,191   copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,193   copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,195   copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,197   copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,199   copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,201   copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,203   copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,205   copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,207   copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,210   copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,212   copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,214   copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,216   copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,218   copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,220   copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,223   copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,225   copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,227   copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,229   copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,231   copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,233   copying skbio/io/format/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,236   copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,238   copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,240   copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,242   copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,245   copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,246   copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,248   copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,251   copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,253   copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,255   copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,258   copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,260   copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,262   copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,264   copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,266   copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,268   copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,270   copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,272   copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,274   copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,277   copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,279   copying skbio/io/format/tests/data/qual_single_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,281   copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,283   copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,285   copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,288   copying skbio/io/format/tests/data/sample-metadata-comments-comment-char-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,290   copying skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,292   copying skbio/io/format/tests/data/sample-metadata-comments.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,294   copying skbio/io/format/tests/data/sample-metadata-complete-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,297   copying skbio/io/format/tests/data/sample-metadata-empty-rows.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,299   copying skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,301   copying skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,303   copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,305   copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,307   copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,309   copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,311   copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,313   copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,315   copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,318   copying skbio/io/format/tests/data/stockholm_different_padding -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,320   copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,322   copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,324   copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,326   copying skbio/io/format/tests/data/stockholm_duplicate_gc -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,328   copying skbio/io/format/tests/data/stockholm_duplicate_gr -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,330   copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,333   copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,335   copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,337   copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,339   copying skbio/io/format/tests/data/stockholm_invalid_data_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,341   copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,343   copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,345   copying skbio/io/format/tests/data/stockholm_malformed_data_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,348   copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,350   copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,352   copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,354   copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,356   copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,358   copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,360   copying skbio/io/format/tests/data/stockholm_missing_footer -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,362   copying skbio/io/format/tests/data/stockholm_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,364   copying skbio/io/format/tests/data/stockholm_missing_reference_items -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,366   copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,369   copying skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,371   copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,373   copying skbio/io/format/tests/data/stockholm_multiple_msa -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,375   copying skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,378   copying skbio/io/format/tests/data/stockholm_multiple_references -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,380   copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,382   copying skbio/io/format/tests/data/stockholm_no_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,384   copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,386   copying skbio/io/format/tests/data/stockholm_rna -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,388   copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,391   copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,393   copying skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,395   copying skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,397   copying skbio/io/format/tests/data/stockholm_runon_references -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,399   copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,402   copying skbio/io/format/tests/data/stockholm_single_reference -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,404   copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,406   copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,408   copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,410   copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,413   copying skbio/io/format/tests/data/taxdump_names.dmp -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,415   copying skbio/io/format/tests/data/taxdump_nodes.dmp -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,417   copying skbio/io/format/tests/data/tiny_embedding_file.npz -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,462   copying skbio/io/format/tests/data/tsv_10_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,464   copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,466   copying skbio/io/format/tests/data/whitespace_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,469   copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,471   copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,473   copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data
2026-06-01T22:18:56,475   creating build/lib.linux-armv7l-cpython-311/skbio/io/tests
2026-06-01T22:18:56,477   copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests
2026-06-01T22:18:56,479   copying skbio/io/tests/test_descriptors.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests
2026-06-01T22:18:56,482   copying skbio/io/tests/test_format_imports.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests
2026-06-01T22:18:56,485   copying skbio/io/tests/test_iosources.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests
2026-06-01T22:18:56,488   copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests
2026-06-01T22:18:56,491   copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests
2026-06-01T22:18:56,495   creating build/lib.linux-armv7l-cpython-311/skbio/io/tests/data
2026-06-01T22:18:56,496   copying skbio/io/tests/data/big5_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data
2026-06-01T22:18:56,499   copying skbio/io/tests/data/big5_file.bz2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data
2026-06-01T22:18:56,501   copying skbio/io/tests/data/big5_file.gz -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data
2026-06-01T22:18:56,504   copying skbio/io/tests/data/example_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data
2026-06-01T22:18:56,506   copying skbio/io/tests/data/example_file.bz2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data
2026-06-01T22:18:56,509   copying skbio/io/tests/data/example_file.gz -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data
2026-06-01T22:18:56,511   copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data
2026-06-01T22:18:56,514   copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data
2026-06-01T22:18:56,516   creating build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,518   copying skbio/metadata/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,521   copying skbio/metadata/_enan.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,524   copying skbio/metadata/_intersection.c -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,540   copying skbio/metadata/_intersection.pyx -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,543   copying skbio/metadata/_interval.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,547   copying skbio/metadata/_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,551   copying skbio/metadata/_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,554   copying skbio/metadata/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,557   copying skbio/metadata/_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,561   copying skbio/metadata/base.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,564   copying skbio/metadata/io.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,567   copying skbio/metadata/missing.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:56,570   creating build/lib.linux-armv7l-cpython-311/skbio/metadata/tests
2026-06-01T22:18:56,571   copying skbio/metadata/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests
2026-06-01T22:18:56,574   copying skbio/metadata/tests/test_enan.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests
2026-06-01T22:18:56,576   copying skbio/metadata/tests/test_intersection.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests
2026-06-01T22:18:56,579   copying skbio/metadata/tests/test_interval.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests
2026-06-01T22:18:56,583   copying skbio/metadata/tests/test_io.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests
2026-06-01T22:18:56,587   copying skbio/metadata/tests/test_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests
2026-06-01T22:18:56,591   copying skbio/metadata/tests/test_metadata_column.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests
2026-06-01T22:18:56,595   copying skbio/metadata/tests/test_missing.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests
2026-06-01T22:18:56,598   copying skbio/metadata/tests/test_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests
2026-06-01T22:18:56,601   creating build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,603   copying skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,606   copying skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,608   copying skbio/metadata/tests/data/invalid/data-longer-than-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,611   copying skbio/metadata/tests/data/invalid/directive-after-directives-section.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,614   copying skbio/metadata/tests/data/invalid/directive-before-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,617   copying skbio/metadata/tests/data/invalid/directive-longer-than-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,620   copying skbio/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,622   copying skbio/metadata/tests/data/invalid/duplicate-column-names.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,626   copying skbio/metadata/tests/data/invalid/duplicate-directives.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,629   copying skbio/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,632   copying skbio/metadata/tests/data/invalid/duplicate-ids.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,635   copying skbio/metadata/tests/data/invalid/empty-column-name.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,637   copying skbio/metadata/tests/data/invalid/empty-file -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,640   copying skbio/metadata/tests/data/invalid/empty-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,642   copying skbio/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,645   copying skbio/metadata/tests/data/invalid/header-only.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,647   copying skbio/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,650   copying skbio/metadata/tests/data/invalid/invalid-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,652   copying skbio/metadata/tests/data/invalid/missing-unknown-scheme.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,655   copying skbio/metadata/tests/data/invalid/non-utf-8.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,657   copying skbio/metadata/tests/data/invalid/qiime1-empty.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,660   copying skbio/metadata/tests/data/invalid/simple-utf-16be.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,662   copying skbio/metadata/tests/data/invalid/simple-utf-16le.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,665   copying skbio/metadata/tests/data/invalid/types-directive-non-numeric.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,668   copying skbio/metadata/tests/data/invalid/unrecognized-column-type.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,670   copying skbio/metadata/tests/data/invalid/unrecognized-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,673   copying skbio/metadata/tests/data/invalid/whitespace-only-column-name.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,676   copying skbio/metadata/tests/data/invalid/whitespace-only-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid
2026-06-01T22:18:56,678   creating build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,680   copying skbio/metadata/tests/data/valid/BOM-simple.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,682   copying skbio/metadata/tests/data/valid/all-cells-padded.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,685   copying skbio/metadata/tests/data/valid/biom-observation-metadata.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,688   copying skbio/metadata/tests/data/valid/case-insensitive-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,690   copying skbio/metadata/tests/data/valid/column-order.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,692   copying skbio/metadata/tests/data/valid/comments.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,695   copying skbio/metadata/tests/data/valid/complete-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,697   copying skbio/metadata/tests/data/valid/complete-types-directive_w_sk.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,700   copying skbio/metadata/tests/data/valid/empty-rows.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,702   copying skbio/metadata/tests/data/valid/empty-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,705   copying skbio/metadata/tests/data/valid/jagged-trailing-columns.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,707   copying skbio/metadata/tests/data/valid/jagged.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,709   copying skbio/metadata/tests/data/valid/leading-trailing-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,712   copying skbio/metadata/tests/data/valid/mac-line-endings.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,714   copying skbio/metadata/tests/data/valid/minimal.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,717   copying skbio/metadata/tests/data/valid/missing-data.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,719   copying skbio/metadata/tests/data/valid/missing-insdc-no-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,722   copying skbio/metadata/tests/data/valid/missing-insdc.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,724   copying skbio/metadata/tests/data/valid/no-columns.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,727   copying skbio/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,729   copying skbio/metadata/tests/data/valid/no-newline-at-eof.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,732   copying skbio/metadata/tests/data/valid/non-standard-characters.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,734   copying skbio/metadata/tests/data/valid/numeric-column.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,736   copying skbio/metadata/tests/data/valid/override-insdc.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,739   copying skbio/metadata/tests/data/valid/partial-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,741   copying skbio/metadata/tests/data/valid/qiime1.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,744   copying skbio/metadata/tests/data/valid/qiita-preparation-information.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,746   copying skbio/metadata/tests/data/valid/qiita-sample-information.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,748   copying skbio/metadata/tests/data/valid/recommended-ids.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,751   copying skbio/metadata/tests/data/valid/rows-shorter-than-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,753   copying skbio/metadata/tests/data/valid/simple-with-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,755   copying skbio/metadata/tests/data/valid/simple.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,757   copying skbio/metadata/tests/data/valid/simple.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,759   copying skbio/metadata/tests/data/valid/single-column.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,761   copying skbio/metadata/tests/data/valid/single-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,764   copying skbio/metadata/tests/data/valid/trailing-columns.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,766   copying skbio/metadata/tests/data/valid/unix-line-endings.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,768   copying skbio/metadata/tests/data/valid/windows-line-endings.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid
2026-06-01T22:18:56,770   creating build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,771   copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,774   copying skbio/sequence/_alphabet.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,777   copying skbio/sequence/_dna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,779   copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,782   copying skbio/sequence/_grammared_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,785   copying skbio/sequence/_nucleotide_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,788   copying skbio/sequence/_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,790   copying skbio/sequence/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,793   copying skbio/sequence/_rna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,797   copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,801   copying skbio/sequence/_substitution.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,804   copying skbio/sequence/distance.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence
2026-06-01T22:18:56,807   creating build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,808   copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,811   copying skbio/sequence/tests/test_alphabet.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,814   copying skbio/sequence/tests/test_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,817   copying skbio/sequence/tests/test_dna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,820   copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,823   copying skbio/sequence/tests/test_grammared_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,826   copying skbio/sequence/tests/test_nucleotide_sequences.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,829   copying skbio/sequence/tests/test_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,833   copying skbio/sequence/tests/test_rna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,835   copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,840   copying skbio/sequence/tests/test_substitution.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests
2026-06-01T22:18:56,842   creating build/lib.linux-armv7l-cpython-311/skbio/stats
2026-06-01T22:18:56,843   copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats
2026-06-01T22:18:56,846   copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats
2026-06-01T22:18:56,848   copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/stats
2026-06-01T22:18:56,851   copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/stats
2026-06-01T22:18:56,854   copying skbio/stats/power.py -> build/lib.linux-armv7l-cpython-311/skbio/stats
2026-06-01T22:18:56,857   creating build/lib.linux-armv7l-cpython-311/skbio/stats/composition
2026-06-01T22:18:56,858   copying skbio/stats/composition/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition
2026-06-01T22:18:56,861   copying skbio/stats/composition/_ancom.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition
2026-06-01T22:18:56,865   copying skbio/stats/composition/_ancombc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition
2026-06-01T22:18:56,868   copying skbio/stats/composition/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition
2026-06-01T22:18:56,872   copying skbio/stats/composition/_dirmult.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition
2026-06-01T22:18:56,875   copying skbio/stats/composition/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition
2026-06-01T22:18:56,878   creating build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests
2026-06-01T22:18:56,880   copying skbio/stats/composition/tests/test_ancom.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests
2026-06-01T22:18:56,884   copying skbio/stats/composition/tests/test_ancombc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests
2026-06-01T22:18:56,887   copying skbio/stats/composition/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests
2026-06-01T22:18:56,891   copying skbio/stats/composition/tests/test_dirmult.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests
2026-06-01T22:18:56,894   copying skbio/stats/composition/tests/test_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests
2026-06-01T22:18:56,898   creating build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data
2026-06-01T22:18:56,899   copying skbio/stats/composition/tests/data/pseq_feature_table_subset.csv.gz -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data
2026-06-01T22:18:56,903   copying skbio/stats/composition/tests/data/pseq_meta_data_subset.csv.gz -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data
2026-06-01T22:18:56,906   copying skbio/stats/composition/tests/data/pseq_subset_out_res_diff_abn.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data
2026-06-01T22:18:56,910   creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,911   copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,914   copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,918   copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,922   copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,925   copying skbio/stats/distance/_cutils.c -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,955   copying skbio/stats/distance/_cutils.pyx -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,958   copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,961   copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,965   copying skbio/stats/distance/_permdisp.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,968   copying skbio/stats/distance/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:18:56,971   creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests
2026-06-01T22:18:56,972   copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests
2026-06-01T22:18:56,975   copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests
2026-06-01T22:18:56,979   copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests
2026-06-01T22:18:56,983   copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests
2026-06-01T22:18:56,986   copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests
2026-06-01T22:18:56,990   copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests
2026-06-01T22:18:56,993   copying skbio/stats/distance/tests/test_permdisp.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests
2026-06-01T22:18:56,997   copying skbio/stats/distance/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests
2026-06-01T22:18:57,000   creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,002   copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,005   copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,008   copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,011   copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,013   copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,016   copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,019   copying skbio/stats/distance/tests/data/dm2.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,021   copying skbio/stats/distance/tests/data/dm3.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,024   copying skbio/stats/distance/tests/data/dm4.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,027   copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,030   copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,033   copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,036   copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,039   copying skbio/stats/distance/tests/data/frameSeries_dm.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,043   copying skbio/stats/distance/tests/data/frameSeries_grouping.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,046   copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,049   copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,052   copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,056   copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,059   copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,061   copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,065   copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,067   copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,070   copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,073   copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,075   copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data
2026-06-01T22:18:57,078   creating build/lib.linux-armv7l-cpython-311/skbio/stats/evolve
2026-06-01T22:18:57,079   copying skbio/stats/evolve/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve
2026-06-01T22:18:57,082   copying skbio/stats/evolve/_hommola.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve
2026-06-01T22:18:57,085   creating build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests
2026-06-01T22:18:57,086   copying skbio/stats/evolve/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests
2026-06-01T22:18:57,089   copying skbio/stats/evolve/tests/test_hommola.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests
2026-06-01T22:18:57,092   creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,093   copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,096   copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,099   copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,102   copying skbio/stats/ordination/_cutils.c -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,123   copying skbio/stats/ordination/_cutils.pyx -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,127   copying skbio/stats/ordination/_mmvec.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,131   copying skbio/stats/ordination/_ordination_results.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,134   copying skbio/stats/ordination/_principal_component_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,137   copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,141   copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,144   copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:18:57,147   creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests
2026-06-01T22:18:57,149   copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests
2026-06-01T22:18:57,152   copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests
2026-06-01T22:18:57,155   copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests
2026-06-01T22:18:57,159   copying skbio/stats/ordination/tests/test_mmvec.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests
2026-06-01T22:18:57,163   copying skbio/stats/ordination/tests/test_ordination_results.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests
2026-06-01T22:18:57,167   copying skbio/stats/ordination/tests/test_principal_component_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests
2026-06-01T22:18:57,170   copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests
2026-06-01T22:18:57,173   copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests
2026-06-01T22:18:57,177   copying skbio/stats/ordination/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests
2026-06-01T22:18:57,180   creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,181   copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,184   copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,187   copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,189   copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,192   copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,195   copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,197   copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,200   copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,203   copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,205   copying skbio/stats/ordination/tests/data/PCoA_skbio -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,208   copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,211   copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,213   copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,216   copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,218   copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,221   copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,224   copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,227   copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,229   copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,232   copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,235   copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,237   copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,240   copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,243   copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,245   copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,248   copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,251   copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,253   copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,256   copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,258   copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,261   copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,263   copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,266   copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,268   copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,271   copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,273   copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,276   copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,278   copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,281   copying skbio/stats/ordination/tests/data/varechem.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,283   copying skbio/stats/ordination/tests/data/varespec.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data
2026-06-01T22:18:57,286   creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf
2026-06-01T22:18:57,287   copying skbio/stats/ordination/tests/data/cf/README.md -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf
2026-06-01T22:18:57,289   copying skbio/stats/ordination/tests/data/cf/metabolite_meta.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf
2026-06-01T22:18:57,292   copying skbio/stats/ordination/tests/data/cf/metabolites.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf
2026-06-01T22:18:57,294   copying skbio/stats/ordination/tests/data/cf/microbe_meta.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf
2026-06-01T22:18:57,297   copying skbio/stats/ordination/tests/data/cf/microbes.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf
2026-06-01T22:18:57,299   creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils
2026-06-01T22:18:57,300   copying skbio/stats/ordination/tests/data/soils/README.md -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils
2026-06-01T22:18:57,302   copying skbio/stats/ordination/tests/data/soils/metabolites.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils
2026-06-01T22:18:57,305   copying skbio/stats/ordination/tests/data/soils/metabolites.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils
2026-06-01T22:18:57,307   copying skbio/stats/ordination/tests/data/soils/microbes.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils
2026-06-01T22:18:57,311   copying skbio/stats/ordination/tests/data/soils/microbes.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils
2026-06-01T22:18:57,313   creating build/lib.linux-armv7l-cpython-311/skbio/stats/tests
2026-06-01T22:18:57,314   copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests
2026-06-01T22:18:57,317   copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests
2026-06-01T22:18:57,320   copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests
2026-06-01T22:18:57,323   copying skbio/stats/tests/test_power.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests
2026-06-01T22:18:57,326   copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests
2026-06-01T22:18:57,329   creating build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,330   copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,332   copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,335   copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,337   copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,339   copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,341   copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,344   copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,346   copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,349   copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,351   copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,353   copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,356   copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data
2026-06-01T22:18:57,358   creating build/lib.linux-armv7l-cpython-311/skbio/table
2026-06-01T22:18:57,359   copying skbio/table/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/table
2026-06-01T22:18:57,362   copying skbio/table/_augment.py -> build/lib.linux-armv7l-cpython-311/skbio/table
2026-06-01T22:18:57,366   copying skbio/table/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/table
2026-06-01T22:18:57,368   copying skbio/table/_tabular.py -> build/lib.linux-armv7l-cpython-311/skbio/table
2026-06-01T22:18:57,370   creating build/lib.linux-armv7l-cpython-311/skbio/table/tests
2026-06-01T22:18:57,371   copying skbio/table/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests
2026-06-01T22:18:57,374   copying skbio/table/tests/test_augment.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests
2026-06-01T22:18:57,377   copying skbio/table/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests
2026-06-01T22:18:57,379   copying skbio/table/tests/test_tabular.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests
2026-06-01T22:18:57,382   creating build/lib.linux-armv7l-cpython-311/skbio/tests
2026-06-01T22:18:57,383   copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tests
2026-06-01T22:18:57,385   copying skbio/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/tests
2026-06-01T22:18:57,388   copying skbio/tests/test_config.py -> build/lib.linux-armv7l-cpython-311/skbio/tests
2026-06-01T22:18:57,390   copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-311/skbio/tests
2026-06-01T22:18:57,393   creating build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,394   copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,397   copying skbio/tree/_c_me.c -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,444   copying skbio/tree/_c_me.pyx -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,448   copying skbio/tree/_c_nj.c -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,467   copying skbio/tree/_c_nj.pyx -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,469   copying skbio/tree/_compare.py -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,472   copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,474   copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,477   copying skbio/tree/_me.py -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,481   copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,484   copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,489   copying skbio/tree/_upgma.py -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,492   copying skbio/tree/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:18:57,494   creating build/lib.linux-armv7l-cpython-311/skbio/tree/tests
2026-06-01T22:18:57,495   copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests
2026-06-01T22:18:57,497   copying skbio/tree/tests/test_compare.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests
2026-06-01T22:18:57,500   copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests
2026-06-01T22:18:57,503   copying skbio/tree/tests/test_me.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests
2026-06-01T22:18:57,507   copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests
2026-06-01T22:18:57,510   copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests
2026-06-01T22:18:57,515   copying skbio/tree/tests/test_upgma.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests
2026-06-01T22:18:57,518   copying skbio/tree/tests/test_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests
2026-06-01T22:18:57,521   creating build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data
2026-06-01T22:18:57,522   copying skbio/tree/tests/data/mp100.bme.nni.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data
2026-06-01T22:18:57,525   copying skbio/tree/tests/data/mp100.bme.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data
2026-06-01T22:18:57,528   copying skbio/tree/tests/data/mp100.gme.nni.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data
2026-06-01T22:18:57,531   copying skbio/tree/tests/data/mp100.gme.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data
2026-06-01T22:18:57,534   copying skbio/tree/tests/data/mp100.nj.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data
2026-06-01T22:18:57,537   copying skbio/tree/tests/data/mp100.phy -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data
2026-06-01T22:18:57,541   copying skbio/tree/tests/data/mp100.upgma.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data
2026-06-01T22:18:57,543   creating build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,545   copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,548   copying skbio/util/_array.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,551   copying skbio/util/_decorator.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,554   copying skbio/util/_docstring.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,557   copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,559   copying skbio/util/_gpu.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,562   copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,565   copying skbio/util/_optionals.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,568   copying skbio/util/_plotting.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,571   copying skbio/util/_random.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,574   copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,577   copying skbio/util/_typing.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,580   copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/util
2026-06-01T22:18:57,583   creating build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,585   copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,587   copying skbio/util/tests/test_array.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,591   copying skbio/util/tests/test_decorator.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,594   copying skbio/util/tests/test_docstring.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,597   copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,601   copying skbio/util/tests/test_optionals.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,603   copying skbio/util/tests/test_plotting.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,606   copying skbio/util/tests/test_random.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,608   copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,612   copying skbio/util/tests/test_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests
2026-06-01T22:18:57,618   running build_ext
2026-06-01T22:18:57,628   building 'skbio.metadata._intersection' extension
2026-06-01T22:18:57,629   creating build/temp.linux-armv7l-cpython-311/skbio/metadata
2026-06-01T22:18:57,632   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/metadata/_intersection.c -o build/temp.linux-armv7l-cpython-311/skbio/metadata/_intersection.o
2026-06-01T22:19:11,540   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/metadata/_intersection.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.cpython-311-arm-linux-gnueabihf.so
2026-06-01T22:19:11,676   building 'skbio.tree._c_nj' extension
2026-06-01T22:19:11,677   creating build/temp.linux-armv7l-cpython-311/skbio/tree
2026-06-01T22:19:11,678   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/tree/_c_nj.c -o build/temp.linux-armv7l-cpython-311/skbio/tree/_c_nj.o -I. -fopenmp
2026-06-01T22:19:23,853   In function ‘__pyx_pf_5skbio_4tree_5_c_nj_2nj_minq_cy’,
2026-06-01T22:19:23,854       inlined from ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’ at skbio/tree/_c_nj.c:17108:13:
2026-06-01T22:19:23,869   skbio/tree/_c_nj.c:17285:16: warning: ‘__pyx_v_min_j’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:19:23,870   17285 |   __pyx_t_14 = PyLong_FromSsize_t(__pyx_v_min_j); if (unlikely(!__pyx_t_14)) __PYX_ERR(0, 70, __pyx_L1_error)
2026-06-01T22:19:23,870         |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-06-01T22:19:23,871   skbio/tree/_c_nj.c: In function ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’:
2026-06-01T22:19:23,886   skbio/tree/_c_nj.c:17126:14: note: ‘__pyx_v_min_j’ was declared here
2026-06-01T22:19:23,886   17126 |   Py_ssize_t __pyx_v_min_j;
2026-06-01T22:19:23,887         |              ^~~~~~~~~~~~~
2026-06-01T22:19:23,887   In function ‘__pyx_pf_5skbio_4tree_5_c_nj_2nj_minq_cy’,
2026-06-01T22:19:23,888       inlined from ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’ at skbio/tree/_c_nj.c:17108:13:
2026-06-01T22:19:23,900   skbio/tree/_c_nj.c:17283:16: warning: ‘__pyx_v_min_i’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:19:23,901   17283 |   __pyx_t_13 = PyLong_FromSsize_t(__pyx_v_min_i); if (unlikely(!__pyx_t_13)) __PYX_ERR(0, 70, __pyx_L1_error)
2026-06-01T22:19:23,902         |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-06-01T22:19:23,902   skbio/tree/_c_nj.c: In function ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’:
2026-06-01T22:19:23,916   skbio/tree/_c_nj.c:17125:14: note: ‘__pyx_v_min_i’ was declared here
2026-06-01T22:19:23,917   17125 |   Py_ssize_t __pyx_v_min_i;
2026-06-01T22:19:23,918         |              ^~~~~~~~~~~~~
2026-06-01T22:19:24,135   In function ‘__pyx_pf_5skbio_4tree_5_c_nj_4nj_minq_cy’,
2026-06-01T22:19:24,136       inlined from ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’ at skbio/tree/_c_nj.c:17389:13:
2026-06-01T22:19:24,150   skbio/tree/_c_nj.c:17566:16: warning: ‘__pyx_v_min_j’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:19:24,151   17566 |   __pyx_t_14 = PyLong_FromSsize_t(__pyx_v_min_j); if (unlikely(!__pyx_t_14)) __PYX_ERR(0, 70, __pyx_L1_error)
2026-06-01T22:19:24,151         |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-06-01T22:19:24,152   skbio/tree/_c_nj.c: In function ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’:
2026-06-01T22:19:24,167   skbio/tree/_c_nj.c:17407:14: note: ‘__pyx_v_min_j’ was declared here
2026-06-01T22:19:24,167   17407 |   Py_ssize_t __pyx_v_min_j;
2026-06-01T22:19:24,168         |              ^~~~~~~~~~~~~
2026-06-01T22:19:24,168   In function ‘__pyx_pf_5skbio_4tree_5_c_nj_4nj_minq_cy’,
2026-06-01T22:19:24,169       inlined from ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’ at skbio/tree/_c_nj.c:17389:13:
2026-06-01T22:19:24,182   skbio/tree/_c_nj.c:17564:16: warning: ‘__pyx_v_min_i’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:19:24,182   17564 |   __pyx_t_13 = PyLong_FromSsize_t(__pyx_v_min_i); if (unlikely(!__pyx_t_13)) __PYX_ERR(0, 70, __pyx_L1_error)
2026-06-01T22:19:24,183         |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-06-01T22:19:24,183   skbio/tree/_c_nj.c: In function ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’:
2026-06-01T22:19:24,198   skbio/tree/_c_nj.c:17406:14: note: ‘__pyx_v_min_i’ was declared here
2026-06-01T22:19:24,198   17406 |   Py_ssize_t __pyx_v_min_i;
2026-06-01T22:19:24,199         |              ^~~~~~~~~~~~~
2026-06-01T22:19:29,408   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/tree/_c_nj.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.cpython-311-arm-linux-gnueabihf.so -fopenmp
2026-06-01T22:19:29,546   building 'skbio.tree._c_me' extension
2026-06-01T22:19:29,547   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/tree/_c_me.c -o build/temp.linux-armv7l-cpython-311/skbio/tree/_c_me.o -I. -fopenmp
2026-06-01T22:20:28,118   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/tree/_c_me.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.cpython-311-arm-linux-gnueabihf.so -fopenmp
2026-06-01T22:20:28,318   building 'skbio.diversity._phylogenetic' extension
2026-06-01T22:20:28,319   creating build/temp.linux-armv7l-cpython-311/skbio/diversity
2026-06-01T22:20:28,320   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/diversity/_phylogenetic.c -o build/temp.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.o
2026-06-01T22:20:35,628   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.cpython-311-arm-linux-gnueabihf.so
2026-06-01T22:20:35,742   building 'skbio.stats.ordination._cutils' extension
2026-06-01T22:20:35,743   creating build/temp.linux-armv7l-cpython-311/skbio/stats/ordination
2026-06-01T22:20:35,745   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/stats/ordination/_cutils.c -o build/temp.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.o -I. -fopenmp
2026-06-01T22:20:41,028   skbio/stats/ordination/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_10ordination_7_cutils_8e_matrix_means_cy._omp_fn.0’:
2026-06-01T22:20:41,046   skbio/stats/ordination/_cutils.c:18784:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:20:41,047   18784 |                                   __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno;
2026-06-01T22:20:41,048         |                                                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2026-06-01T22:20:41,064   skbio/stats/ordination/_cutils.c:18507:7: note: ‘__pyx_clineno’ was declared here
2026-06-01T22:20:41,065   18507 |   int __pyx_clineno = 0;
2026-06-01T22:20:41,066         |       ^~~~~~~~~~~~~
2026-06-01T22:20:41,139   skbio/stats/ordination/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_10ordination_7_cutils_6e_matrix_means_cy._omp_fn.0’:
2026-06-01T22:20:41,157   skbio/stats/ordination/_cutils.c:18255:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:20:41,157   18255 |                                   __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno;
2026-06-01T22:20:41,158         |                                                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2026-06-01T22:20:41,174   skbio/stats/ordination/_cutils.c:17978:7: note: ‘__pyx_clineno’ was declared here
2026-06-01T22:20:41,175   17978 |   int __pyx_clineno = 0;
2026-06-01T22:20:41,175         |       ^~~~~~~~~~~~~
2026-06-01T22:20:57,668   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.cpython-311-arm-linux-gnueabihf.so -fopenmp
2026-06-01T22:20:57,830   building 'skbio.stats.distance._cutils' extension
2026-06-01T22:20:57,831   creating build/temp.linux-armv7l-cpython-311/skbio/stats/distance
2026-06-01T22:20:57,831   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/stats/distance/_cutils.c -o build/temp.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.o -I. -fopenmp
2026-06-01T22:21:05,286   skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_48permanova_f_stat_sW_cy._omp_fn.0’:
2026-06-01T22:21:05,313   skbio/stats/distance/_cutils.c:27975:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:21:05,314   27975 |                                   __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno;
2026-06-01T22:21:05,314         |                                                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2026-06-01T22:21:05,341   skbio/stats/distance/_cutils.c:27599:7: note: ‘__pyx_clineno’ was declared here
2026-06-01T22:21:05,341   27599 |   int __pyx_clineno = 0;
2026-06-01T22:21:05,342         |       ^~~~~~~~~~~~~
2026-06-01T22:21:05,470   skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_46permanova_f_stat_sW_cy._omp_fn.0’:
2026-06-01T22:21:05,496   skbio/stats/distance/_cutils.c:27365:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:21:05,497   27365 |                                   __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno;
2026-06-01T22:21:05,498         |                                                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2026-06-01T22:21:05,523   skbio/stats/distance/_cutils.c:26989:7: note: ‘__pyx_clineno’ was declared here
2026-06-01T22:21:05,524   26989 |   int __pyx_clineno = 0;
2026-06-01T22:21:05,524         |       ^~~~~~~~~~~~~
2026-06-01T22:21:07,894   skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_40mantel_perm_pearsonr_condensed_cy._omp_fn.0’:
2026-06-01T22:21:07,919   skbio/stats/distance/_cutils.c:25877:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:21:07,920   25877 |                                   __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno;
2026-06-01T22:21:07,921         |                                                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2026-06-01T22:21:07,945   skbio/stats/distance/_cutils.c:25506:7: note: ‘__pyx_clineno’ was declared here
2026-06-01T22:21:07,946   25506 |   int __pyx_clineno = 0;
2026-06-01T22:21:07,946         |       ^~~~~~~~~~~~~
2026-06-01T22:21:08,086   skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_42mantel_perm_pearsonr_condensed_cy._omp_fn.0’:
2026-06-01T22:21:08,110   skbio/stats/distance/_cutils.c:26505:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:21:08,110   26505 |                                   __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno;
2026-06-01T22:21:08,111         |                                                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2026-06-01T22:21:08,136   skbio/stats/distance/_cutils.c:26134:7: note: ‘__pyx_clineno’ was declared here
2026-06-01T22:21:08,136   26134 |   int __pyx_clineno = 0;
2026-06-01T22:21:08,137         |       ^~~~~~~~~~~~~
2026-06-01T22:21:08,769   skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_52permanova_f_stat_sW_condensed_cy._omp_fn.0’:
2026-06-01T22:21:08,794   skbio/stats/distance/_cutils.c:28886:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:21:08,795   28886 |                                   __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno;
2026-06-01T22:21:08,796         |                                                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2026-06-01T22:21:08,823   skbio/stats/distance/_cutils.c:28474:7: note: ‘__pyx_clineno’ was declared here
2026-06-01T22:21:08,823   28474 |   int __pyx_clineno = 0;
2026-06-01T22:21:08,824         |       ^~~~~~~~~~~~~
2026-06-01T22:21:09,002   skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_54permanova_f_stat_sW_condensed_cy._omp_fn.0’:
2026-06-01T22:21:09,029   skbio/stats/distance/_cutils.c:29534:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:21:09,029   29534 |                                   __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno;
2026-06-01T22:21:09,030         |                                                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2026-06-01T22:21:09,058   skbio/stats/distance/_cutils.c:29122:7: note: ‘__pyx_clineno’ was declared here
2026-06-01T22:21:09,058   29122 |   int __pyx_clineno = 0;
2026-06-01T22:21:09,059         |       ^~~~~~~~~~~~~
2026-06-01T22:21:13,885   In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_54permanova_f_stat_sW_condensed_cy’,
2026-06-01T22:21:13,885       inlined from ‘__pyx_fuse_1__pyx_pw_5skbio_5stats_8distance_7_cutils_55permanova_f_stat_sW_condensed_cy’ at skbio/stats/distance/_cutils.c:29080:13:
2026-06-01T22:21:13,911   skbio/stats/distance/_cutils.c:29239:25: warning: ‘__pyx_v_local_s_W’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:21:13,911   29239 |                 #pragma omp parallel reduction(+:__pyx_v_local_s_W) reduction(+:__pyx_v_s_W) private(__pyx_t_1, __pyx_t_5, __pyx_t_6, __pyx_t_7, __pyx_t_8, __pyx_t_9) __Pyx_shared_in_cpython_freethreading(__pyx_parallel_freethreading_mutex) private(__pyx_filename, __pyx_lineno, __pyx_clineno) shared(__pyx_parallel_why, __pyx_parallel_exc_type, __pyx_parallel_exc_value, __pyx_parallel_exc_tb)
2026-06-01T22:21:13,912         |                         ^~~
2026-06-01T22:21:13,913   skbio/stats/distance/_cutils.c: In function ‘__pyx_fuse_1__pyx_pw_5skbio_5stats_8distance_7_cutils_55permanova_f_stat_sW_condensed_cy’:
2026-06-01T22:21:13,940   skbio/stats/distance/_cutils.c:29099:10: note: ‘__pyx_v_local_s_W’ was declared here
2026-06-01T22:21:13,941   29099 |   double __pyx_v_local_s_W;
2026-06-01T22:21:13,942         |          ^~~~~~~~~~~~~~~~~
2026-06-01T22:21:14,232   In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_52permanova_f_stat_sW_condensed_cy’,
2026-06-01T22:21:14,232       inlined from ‘__pyx_fuse_0__pyx_pw_5skbio_5stats_8distance_7_cutils_53permanova_f_stat_sW_condensed_cy’ at skbio/stats/distance/_cutils.c:28432:13:
2026-06-01T22:21:14,260   skbio/stats/distance/_cutils.c:28591:25: warning: ‘__pyx_v_local_s_W’ may be used uninitialized [-Wmaybe-uninitialized]
2026-06-01T22:21:14,261   28591 |                 #pragma omp parallel reduction(+:__pyx_v_local_s_W) reduction(+:__pyx_v_s_W) private(__pyx_t_1, __pyx_t_5, __pyx_t_6, __pyx_t_7, __pyx_t_8, __pyx_t_9) __Pyx_shared_in_cpython_freethreading(__pyx_parallel_freethreading_mutex) private(__pyx_filename, __pyx_lineno, __pyx_clineno) shared(__pyx_parallel_why, __pyx_parallel_exc_type, __pyx_parallel_exc_value, __pyx_parallel_exc_tb)
2026-06-01T22:21:14,261         |                         ^~~
2026-06-01T22:21:14,262   skbio/stats/distance/_cutils.c: In function ‘__pyx_fuse_0__pyx_pw_5skbio_5stats_8distance_7_cutils_53permanova_f_stat_sW_condensed_cy’:
2026-06-01T22:21:14,289   skbio/stats/distance/_cutils.c:28451:10: note: ‘__pyx_v_local_s_W’ was declared here
2026-06-01T22:21:14,289   28451 |   double __pyx_v_local_s_W;
2026-06-01T22:21:14,290         |          ^~~~~~~~~~~~~~~~~
2026-06-01T22:21:31,110   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.cpython-311-arm-linux-gnueabihf.so -fopenmp
2026-06-01T22:21:31,285   building 'skbio.alignment._cutils' extension
2026-06-01T22:21:31,285   creating build/temp.linux-armv7l-cpython-311/skbio/alignment
2026-06-01T22:21:31,286   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-build-env-iy1lbtjw/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/alignment/_cutils.c -o build/temp.linux-armv7l-cpython-311/skbio/alignment/_cutils.o -I. -fopenmp
2026-06-01T22:21:31,930   skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_12_fill_linear_matrix’:
2026-06-01T22:21:31,946   skbio/alignment/_cutils.c:18154:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2026-06-01T22:21:31,947   18154 |     __pyx_v_row = (&(*((float const  *) ( /* dim=1 */ ((char *) (((float const  *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) ))));
2026-06-01T22:21:31,947         |                 ^
2026-06-01T22:21:31,957   skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_14_fill_linear_matrix’:
2026-06-01T22:21:31,973   skbio/alignment/_cutils.c:18461:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2026-06-01T22:21:31,974   18461 |     __pyx_v_row = (&(*((double const  *) ( /* dim=1 */ ((char *) (((double const  *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) ))));
2026-06-01T22:21:31,975         |                 ^
2026-06-01T22:21:32,000   skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_18_fill_affine_matrices’:
2026-06-01T22:21:32,017   skbio/alignment/_cutils.c:19072:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2026-06-01T22:21:32,018   19072 |     __pyx_v_row = (&(*((float const  *) ( /* dim=1 */ ((char *) (((float const  *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) ))));
2026-06-01T22:21:32,018         |                 ^
2026-06-01T22:21:32,034   skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_20_fill_affine_matrices’:
2026-06-01T22:21:32,050   skbio/alignment/_cutils.c:19467:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2026-06-01T22:21:32,051   19467 |     __pyx_v_row = (&(*((double const  *) ( /* dim=1 */ ((char *) (((double const  *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) ))));
2026-06-01T22:21:32,051         |                 ^
2026-06-01T22:21:56,117   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/alignment/_cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.cpython-311-arm-linux-gnueabihf.so -fopenmp
2026-06-01T22:21:56,277   installing to build/bdist.linux-armv7l/wheel
2026-06-01T22:21:56,278   running install
2026-06-01T22:21:56,302   running install_lib
2026-06-01T22:21:56,309   creating build/bdist.linux-armv7l/wheel
2026-06-01T22:21:56,312   creating build/bdist.linux-armv7l/wheel/skbio
2026-06-01T22:21:56,313   creating build/bdist.linux-armv7l/wheel/skbio/stats
2026-06-01T22:21:56,315   creating build/bdist.linux-armv7l/wheel/skbio/stats/distance
2026-06-01T22:21:56,317   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_mantel.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,320   creating build/bdist.linux-armv7l/wheel/skbio/stats/distance/tests
2026-06-01T22:21:56,321   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_anosim.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests
2026-06-01T22:21:56,324   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests
2026-06-01T22:21:56,326   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_permanova.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests
2026-06-01T22:21:56,328   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_permdisp.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests
2026-06-01T22:21:56,331   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_mantel.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests
2026-06-01T22:21:56,334   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_bioenv.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests
2026-06-01T22:21:56,338   creating build/bdist.linux-armv7l/wheel/skbio/stats/distance/tests/data
2026-06-01T22:21:56,339   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm3.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,341   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/df_extra_column.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,343   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,345   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,347   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,349   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,352   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,354   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,356   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,358   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm_reordered.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,360   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm4.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,361   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,363   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/df.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,365   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,367   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,369   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,371   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,373   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/exp_results.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,375   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/frameSeries_grouping.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,377   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,379   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,381   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/frameSeries_dm.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,384   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm2.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,386   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,388   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,390   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data
2026-06-01T22:21:56,392   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests
2026-06-01T22:21:56,395   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests
2026-06-01T22:21:56,399   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,401   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,405   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,429   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,431   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_permanova.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,434   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_bioenv.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,437   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_permdisp.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,439   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_anosim.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,442   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.c -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,482   copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.pyx -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance
2026-06-01T22:21:56,485   creating build/bdist.linux-armv7l/wheel/skbio/stats/tests
2026-06-01T22:21:56,486   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests
2026-06-01T22:21:56,488   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_subsample.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests
2026-06-01T22:21:56,491   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_power.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests
2026-06-01T22:21:56,493   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests
2026-06-01T22:21:56,495   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_gradient.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests
2026-06-01T22:21:56,499   creating build/bdist.linux-armv7l/wheel/skbio/stats/tests/data
2026-06-01T22:21:56,500   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_data_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,502   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_no_data_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,504   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,506   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_wo_msg_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,508   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_data_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,510   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_wo_msg_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,512   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_real_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,514   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_real_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,516   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_w_msg_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,518   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_w_msg_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,520   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,522   copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_no_data_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data
2026-06-01T22:21:56,524   copying build/lib.linux-armv7l-cpython-311/skbio/stats/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats
2026-06-01T22:21:56,526   creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination
2026-06-01T22:21:56,527   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,531   creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination/tests
2026-06-01T22:21:56,532   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_principal_component_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests
2026-06-01T22:21:56,534   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_mmvec.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests
2026-06-01T22:21:56,537   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests
2026-06-01T22:21:56,539   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_ordination_results.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests
2026-06-01T22:21:56,542   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests
2026-06-01T22:21:56,544   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests
2026-06-01T22:21:56,548   creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination/tests/data
2026-06-01T22:21:56,549   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,551   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,553   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_X -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,555   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,557   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,559   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,561   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,562   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,565   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,567   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,569   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,571   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,574   creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination/tests/data/soils
2026-06-01T22:21:56,575   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils/README.md -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/soils
2026-06-01T22:21:56,577   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils/microbes.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/soils
2026-06-01T22:21:56,578   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils/microbes.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/soils
2026-06-01T22:21:56,581   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils/metabolites.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/soils
2026-06-01T22:21:56,584   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils/metabolites.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/soils
2026-06-01T22:21:56,586   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,588   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_Y -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,589   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,591   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,593   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,595   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/varechem.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,598   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,600   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,602   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,604   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,606   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,608   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,610   creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination/tests/data/cf
2026-06-01T22:21:56,612   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf/README.md -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/cf
2026-06-01T22:21:56,614   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf/microbes.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/cf
2026-06-01T22:21:56,616   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf/metabolite_meta.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/cf
2026-06-01T22:21:56,618   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf/microbe_meta.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/cf
2026-06-01T22:21:56,620   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf/metabolites.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/cf
2026-06-01T22:21:56,621   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,623   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,625   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,627   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_X -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,629   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,631   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,633   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,635   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,637   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/varespec.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,639   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_skbio -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,641   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/L&L_CA_data -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,643   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,645   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_Y -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,647   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,649   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,651   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data
2026-06-01T22:21:56,653   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests
2026-06-01T22:21:56,655   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests
2026-06-01T22:21:56,658   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests
2026-06-01T22:21:56,660   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,663   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_redundancy_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,665   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,668   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,684   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_ordination_results.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,687   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,690   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_mmvec.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,693   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_principal_component_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,696   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.c -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,727   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_principal_coordinate_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,730   copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.pyx -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination
2026-06-01T22:21:56,733   copying build/lib.linux-armv7l-cpython-311/skbio/stats/_subsample.py -> build/bdist.linux-armv7l/wheel/./skbio/stats
2026-06-01T22:21:56,735   copying build/lib.linux-armv7l-cpython-311/skbio/stats/power.py -> build/bdist.linux-armv7l/wheel/./skbio/stats
2026-06-01T22:21:56,739   creating build/bdist.linux-armv7l/wheel/skbio/stats/composition
2026-06-01T22:21:56,741   creating build/bdist.linux-armv7l/wheel/skbio/stats/composition/tests
2026-06-01T22:21:56,743   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests
2026-06-01T22:21:56,745   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/test_ancom.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests
2026-06-01T22:21:56,749   creating build/bdist.linux-armv7l/wheel/skbio/stats/composition/tests/data
2026-06-01T22:21:56,750   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/pseq_meta_data_subset.csv.gz -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data
2026-06-01T22:21:56,752   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/pseq_feature_table_subset.csv.gz -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data
2026-06-01T22:21:56,755   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/pseq_subset_out_res_diff_abn.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data
2026-06-01T22:21:56,757   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/test_dirmult.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests
2026-06-01T22:21:56,760   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/test_ancombc.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests
2026-06-01T22:21:56,763   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests
2026-06-01T22:21:56,766   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_dirmult.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition
2026-06-01T22:21:56,769   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition
2026-06-01T22:21:56,771   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition
2026-06-01T22:21:56,774   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition
2026-06-01T22:21:56,777   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_ancom.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition
2026-06-01T22:21:56,780   copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_ancombc.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition
2026-06-01T22:21:56,783   copying build/lib.linux-armv7l-cpython-311/skbio/stats/gradient.py -> build/bdist.linux-armv7l/wheel/./skbio/stats
2026-06-01T22:21:56,786   copying build/lib.linux-armv7l-cpython-311/skbio/stats/_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/stats
2026-06-01T22:21:56,788   creating build/bdist.linux-armv7l/wheel/skbio/stats/evolve
2026-06-01T22:21:56,790   creating build/bdist.linux-armv7l/wheel/skbio/stats/evolve/tests
2026-06-01T22:21:56,791   copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests/test_hommola.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve/tests
2026-06-01T22:21:56,794   copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve/tests
2026-06-01T22:21:56,796   copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve
2026-06-01T22:21:56,797   copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/_hommola.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve
2026-06-01T22:21:56,801   creating build/bdist.linux-armv7l/wheel/skbio/binaries
2026-06-01T22:21:56,802   creating build/bdist.linux-armv7l/wheel/skbio/binaries/tests
2026-06-01T22:21:56,804   copying build/lib.linux-armv7l-cpython-311/skbio/binaries/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries/tests
2026-06-01T22:21:56,806   copying build/lib.linux-armv7l-cpython-311/skbio/binaries/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries
2026-06-01T22:21:56,808   copying build/lib.linux-armv7l-cpython-311/skbio/binaries/_util.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries
2026-06-01T22:21:56,811   copying build/lib.linux-armv7l-cpython-311/skbio/binaries/_distance.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries
2026-06-01T22:21:56,813   copying build/lib.linux-armv7l-cpython-311/skbio/binaries/_ordination.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries
2026-06-01T22:21:56,816   creating build/bdist.linux-armv7l/wheel/skbio/tests
2026-06-01T22:21:56,818   copying build/lib.linux-armv7l-cpython-311/skbio/tests/test_workflow.py -> build/bdist.linux-armv7l/wheel/./skbio/tests
2026-06-01T22:21:56,820   copying build/lib.linux-armv7l-cpython-311/skbio/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/tests
2026-06-01T22:21:56,823   copying build/lib.linux-armv7l-cpython-311/skbio/tests/test_config.py -> build/bdist.linux-armv7l/wheel/./skbio/tests
2026-06-01T22:21:56,825   copying build/lib.linux-armv7l-cpython-311/skbio/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/tests
2026-06-01T22:21:56,827   copying build/lib.linux-armv7l-cpython-311/skbio/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio
2026-06-01T22:21:56,830   creating build/bdist.linux-armv7l/wheel/skbio/embedding
2026-06-01T22:21:56,832   creating build/bdist.linux-armv7l/wheel/skbio/embedding/tests
2026-06-01T22:21:56,833   copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/test_embedding.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests
2026-06-01T22:21:56,836   copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests
2026-06-01T22:21:56,838   copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/test_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests
2026-06-01T22:21:56,841   creating build/bdist.linux-armv7l/wheel/skbio/embedding/tests/data
2026-06-01T22:21:56,842   copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/data/embed1.txt.npy -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests/data
2026-06-01T22:21:56,849   copying build/lib.linux-armv7l-cpython-311/skbio/embedding/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding
2026-06-01T22:21:56,850   copying build/lib.linux-armv7l-cpython-311/skbio/embedding/_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding
2026-06-01T22:21:56,853   copying build/lib.linux-armv7l-cpython-311/skbio/embedding/_embedding.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding
2026-06-01T22:21:56,855   copying build/lib.linux-armv7l-cpython-311/skbio/_base.py -> build/bdist.linux-armv7l/wheel/./skbio
2026-06-01T22:21:56,857   copying build/lib.linux-armv7l-cpython-311/skbio/workflow.py -> build/bdist.linux-armv7l/wheel/./skbio
2026-06-01T22:21:56,861   creating build/bdist.linux-armv7l/wheel/skbio/sequence
2026-06-01T22:21:56,862   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_genetic_code.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,866   creating build/bdist.linux-armv7l/wheel/skbio/sequence/tests
2026-06-01T22:21:56,867   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_rna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,869   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_nucleotide_sequences.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,872   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_grammared_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,875   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,877   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,881   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_dna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,884   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_distance.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,887   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,890   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_substitution.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,893   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_alphabet.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,896   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_genetic_code.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests
2026-06-01T22:21:56,899   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_alphabet.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,902   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_nucleotide_mixin.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,905   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,908   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,912   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,916   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_rna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,918   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_repr.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,921   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/distance.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,925   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_dna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,929   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_grammared_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,932   copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_substitution.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence
2026-06-01T22:21:56,936   creating build/bdist.linux-armv7l/wheel/skbio/metadata
2026-06-01T22:21:56,938   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/base.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:56,941   creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests
2026-06-01T22:21:56,943   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_enan.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests
2026-06-01T22:21:56,945   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests
2026-06-01T22:21:56,947   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_mixin.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests
2026-06-01T22:21:56,950   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_io.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests
2026-06-01T22:21:56,954   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_metadata_column.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests
2026-06-01T22:21:56,958   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_intersection.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests
2026-06-01T22:21:56,961   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests
2026-06-01T22:21:56,965   creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests/data
2026-06-01T22:21:56,968   creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,969   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-ids.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,972   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/unrecognized-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,974   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-directives.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,977   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,979   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,982   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/whitespace-only-column-name.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,984   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/header-only.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,987   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-column-names.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,989   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/qiime1-empty.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,991   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/directive-longer-than-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,993   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/directive-before-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,995   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/invalid-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:56,998   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,000   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/whitespace-only-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,002   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/directive-after-directives-section.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,005   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/simple-utf-16be.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,007   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/non-utf-8.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,009   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/simple-utf-16le.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,011   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/data-longer-than-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,014   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/empty-column-name.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,016   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,019   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/missing-unknown-scheme.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,021   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/empty-file -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,023   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/empty-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,026   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/unrecognized-column-type.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,029   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/types-directive-non-numeric.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,031   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,034   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid
2026-06-01T22:21:57,037   creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests/data/valid
2026-06-01T22:21:57,039   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/non-standard-characters.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,041   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/windows-line-endings.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,044   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/trailing-columns.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,046   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/override-insdc.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,049   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/qiime1.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,051   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/single-column.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,053   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/qiita-sample-information.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,056   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/no-columns.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,058   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/leading-trailing-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,061   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/comments.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,063   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/complete-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,066   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/all-cells-padded.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,068   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/missing-data.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,071   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/no-newline-at-eof.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,074   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/recommended-ids.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,076   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/qiita-preparation-information.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,078   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/numeric-column.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,081   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/minimal.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,083   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/jagged.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,086   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/complete-types-directive_w_sk.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,088   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/unix-line-endings.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,091   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,093   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/simple.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,095   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/case-insensitive-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,098   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/jagged-trailing-columns.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,100   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/biom-observation-metadata.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,102   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/empty-rows.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,105   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/single-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,107   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/simple.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,109   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/partial-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,111   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/missing-insdc.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,114   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/column-order.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,116   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/rows-shorter-than-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,119   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/empty-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,121   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/missing-insdc-no-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,124   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/mac-line-endings.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,126   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/simple-with-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,128   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/BOM-simple.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid
2026-06-01T22:21:57,131   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_missing.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests
2026-06-01T22:21:57,133   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_interval.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests
2026-06-01T22:21:57,136   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/missing.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,139   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,142   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.pyx -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,145   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,147   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/io.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,150   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_mixin.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,153   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_interval.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,157   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_enan.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,159   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_repr.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,162   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_testing.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,165   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,181   copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.c -> build/bdist.linux-armv7l/wheel/./skbio/metadata
2026-06-01T22:21:57,198   copying build/lib.linux-armv7l-cpython-311/skbio/_config.py -> build/bdist.linux-armv7l/wheel/./skbio
2026-06-01T22:21:57,200   copying build/lib.linux-armv7l-cpython-311/skbio/test.py -> build/bdist.linux-armv7l/wheel/./skbio
2026-06-01T22:21:57,202   creating build/bdist.linux-armv7l/wheel/skbio/table
2026-06-01T22:21:57,204   copying build/lib.linux-armv7l-cpython-311/skbio/table/_augment.py -> build/bdist.linux-armv7l/wheel/./skbio/table
2026-06-01T22:21:57,207   creating build/bdist.linux-armv7l/wheel/skbio/table/tests
2026-06-01T22:21:57,208   copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/test_tabular.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests
2026-06-01T22:21:57,211   copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests
2026-06-01T22:21:57,213   copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/test_augment.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests
2026-06-01T22:21:57,216   copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests
2026-06-01T22:21:57,218   copying build/lib.linux-armv7l-cpython-311/skbio/table/_tabular.py -> build/bdist.linux-armv7l/wheel/./skbio/table
2026-06-01T22:21:57,221   copying build/lib.linux-armv7l-cpython-311/skbio/table/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/table
2026-06-01T22:21:57,223   copying build/lib.linux-armv7l-cpython-311/skbio/table/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/table
2026-06-01T22:21:57,227   creating build/bdist.linux-armv7l/wheel/skbio/io
2026-06-01T22:21:57,229   creating build/bdist.linux-armv7l/wheel/skbio/io/tests
2026-06-01T22:21:57,230   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_descriptors.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests
2026-06-01T22:21:57,233   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests
2026-06-01T22:21:57,235   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_iosources.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests
2026-06-01T22:21:57,237   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_format_imports.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests
2026-06-01T22:21:57,240   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_registry.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests
2026-06-01T22:21:57,244   creating build/bdist.linux-armv7l/wheel/skbio/io/tests/data
2026-06-01T22:21:57,245   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/big5_file.gz -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data
2026-06-01T22:21:57,247   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/big5_file -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data
2026-06-01T22:21:57,249   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/example_file.bz2 -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data
2026-06-01T22:21:57,251   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/real_file_2 -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data
2026-06-01T22:21:57,253   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/real_file -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data
2026-06-01T22:21:57,255   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/example_file.gz -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data
2026-06-01T22:21:57,257   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/example_file -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data
2026-06-01T22:21:57,259   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/big5_file.bz2 -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data
2026-06-01T22:21:57,261   copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests
2026-06-01T22:21:57,264   copying build/lib.linux-armv7l-cpython-311/skbio/io/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io
2026-06-01T22:21:57,266   copying build/lib.linux-armv7l-cpython-311/skbio/io/util.py -> build/bdist.linux-armv7l/wheel/./skbio/io
2026-06-01T22:21:57,269   copying build/lib.linux-armv7l-cpython-311/skbio/io/_exception.py -> build/bdist.linux-armv7l/wheel/./skbio/io
2026-06-01T22:21:57,271   copying build/lib.linux-armv7l-cpython-311/skbio/io/_iosources.py -> build/bdist.linux-armv7l/wheel/./skbio/io
2026-06-01T22:21:57,273   copying build/lib.linux-armv7l-cpython-311/skbio/io/descriptors.py -> build/bdist.linux-armv7l/wheel/./skbio/io
2026-06-01T22:21:57,276   copying build/lib.linux-armv7l-cpython-311/skbio/io/_warning.py -> build/bdist.linux-armv7l/wheel/./skbio/io
2026-06-01T22:21:57,278   copying build/lib.linux-armv7l-cpython-311/skbio/io/_fileobject.py -> build/bdist.linux-armv7l/wheel/./skbio/io
2026-06-01T22:21:57,281   creating build/bdist.linux-armv7l/wheel/skbio/io/format
2026-06-01T22:21:57,282   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/stockholm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:57,287   creating build/bdist.linux-armv7l/wheel/skbio/io/format/tests
2026-06-01T22:21:57,288   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,290   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_newick.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,293   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_blast7.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,296   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_blast6.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,298   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,300   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_genbank.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,303   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_gff3.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,306   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_embl.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,309   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_embed.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,312   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_taxdump.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,314   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_emptyfile.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,316   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_phylip.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,318   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_phylip_dm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,321   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_stockholm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,324   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_ordination.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,327   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_biom.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:57,338   creating build/bdist.linux-armv7l/wheel/skbio/io/format/tests/data
2026-06-01T22:21:57,339   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_single_record_simple -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,341   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,343   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,345   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,347   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,349   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multiple_trees -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,351   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,352   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_custom_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,354   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,356   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,358   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,360   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,362   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_gr -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,364   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_no_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,366   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_missing_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,368   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_custom_minimal -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,370   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,371   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/taxdump_names.dmp -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,373   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,375   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,377   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,379   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error7 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,381   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_gc -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,383   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,385   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,387   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,389   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,391   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,393   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,395   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,397   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_good_simple_strict_square_reader.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,399   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_gibberish -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,401   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,403   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,405   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,407   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_custom_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,409   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_no_dists.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,411   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_multi_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,413   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,415   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_constructed -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,417   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,418   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error17 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,421   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,423   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_invalid_data_type -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,425   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,426   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,429   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,430   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,432   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_default_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,435   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_space.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,437   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,439   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error6 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,441   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_rna -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,443   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_valid_lt.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,445   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_filter -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,447   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,449   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,451   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,453   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,455   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_bad_missing_directive -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,456   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,458   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,460   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,462   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,464   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,466   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/taxdump_nodes.dmp -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:57,468   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
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2026-06-01T22:21:58,168   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:58,170   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:58,172   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:58,174   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/empty -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:58,176   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:58,178   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:58,180   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error13 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:58,182   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_ws_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:58,184   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:58,186   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data
2026-06-01T22:21:58,189   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_qseq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:58,191   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_fasta.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:58,194   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_clustal.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:58,197   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_sample_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:58,199   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:58,202   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_fastq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:58,205   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_binary_dm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:58,207   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_lsmat.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests
2026-06-01T22:21:58,210   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/newick.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,213   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,215   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/emptyfile.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,217   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/_blast.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,220   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,222   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/sample_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,225   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/lsmat.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,228   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/_sequence_feature_vocabulary.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,231   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/taxdump.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,234   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/binary_dm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,237   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/gff3.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,240   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/embed.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,242   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/blast7.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,245   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/phylip_dm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,248   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/clustal.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,251   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/genbank.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,254   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/biom.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,257   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/fasta.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,260   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/embl.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,263   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/fastq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,266   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/ordination.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,269   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/phylip.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,272   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/blast6.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,275   copying build/lib.linux-armv7l-cpython-311/skbio/io/format/qseq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format
2026-06-01T22:21:58,278   copying build/lib.linux-armv7l-cpython-311/skbio/io/registry.py -> build/bdist.linux-armv7l/wheel/./skbio/io
2026-06-01T22:21:58,282   creating build/bdist.linux-armv7l/wheel/skbio/tree
2026-06-01T22:21:58,284   creating build/bdist.linux-armv7l/wheel/skbio/tree/tests
2026-06-01T22:21:58,285   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_tree.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests
2026-06-01T22:21:58,290   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests
2026-06-01T22:21:58,292   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_majority_rule.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests
2026-06-01T22:21:58,295   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests
2026-06-01T22:21:58,297   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_compare.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests
2026-06-01T22:21:58,300   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_upgma.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests
2026-06-01T22:21:58,303   creating build/bdist.linux-armv7l/wheel/skbio/tree/tests/data
2026-06-01T22:21:58,304   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.upgma.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data
2026-06-01T22:21:58,306   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.bme.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data
2026-06-01T22:21:58,309   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.nj.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data
2026-06-01T22:21:58,311   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.bme.nni.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data
2026-06-01T22:21:58,313   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.phy -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data
2026-06-01T22:21:58,316   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.gme.nni.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data
2026-06-01T22:21:58,319   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.gme.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data
2026-06-01T22:21:58,321   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_nj.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests
2026-06-01T22:21:58,323   copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_me.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests
2026-06-01T22:21:58,328   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_compare.py -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,330   copying build/lib.linux-armv7l-cpython-311/skbio/tree/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,333   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.c -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,388   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_tree.py -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,393   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,394   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_me.py -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,397   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_exception.py -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,399   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.pyx -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,401   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,436   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_upgma.py -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,438   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_majority_rule.py -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,441   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.c -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,458   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_nj.py -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,460   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.pyx -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,464   copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/tree
2026-06-01T22:21:58,479   creating build/bdist.linux-armv7l/wheel/skbio/alignment
2026-06-01T22:21:58,481   creating build/bdist.linux-armv7l/wheel/skbio/alignment/tests
2026-06-01T22:21:58,483   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_score.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests
2026-06-01T22:21:58,485   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_pair.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests
2026-06-01T22:21:58,488   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests
2026-06-01T22:21:58,490   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_tabular_msa.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests
2026-06-01T22:21:58,495   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_distance.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests
2026-06-01T22:21:58,497   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_pairwise.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests
2026-06-01T22:21:58,500   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_path.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests
2026-06-01T22:21:58,503   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests
2026-06-01T22:21:58,507   creating build/bdist.linux-armv7l/wheel/skbio/alignment/tests/data
2026-06-01T22:21:58,508   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/il6.nucl.aln -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data
2026-06-01T22:21:58,510   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/tp53.nucl.aln -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data
2026-06-01T22:21:58,513   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/insulin.faa -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data
2026-06-01T22:21:58,515   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/il6.prot.aln -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data
2026-06-01T22:21:58,517   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/tp53.prot.aln -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data
2026-06-01T22:21:58,519   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/16s.frn -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data
2026-06-01T22:21:58,521   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_pair.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,524   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,527   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,548   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_path.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,551   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_distance.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,554   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,556   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_pairwise.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,559   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_tabular_msa.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,563   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_repr.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,565   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_indexing.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,568   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.c -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,591   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.pyx -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,594   copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_score.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment
2026-06-01T22:21:58,597   creating build/bdist.linux-armv7l/wheel/skbio/diversity
2026-06-01T22:21:58,598   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.c -> build/bdist.linux-armv7l/wheel/./skbio/diversity
2026-06-01T22:21:58,610   creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta
2026-06-01T22:21:58,612   creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta/tests
2026-06-01T22:21:58,613   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests
2026-06-01T22:21:58,615   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/test_unifrac.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests
2026-06-01T22:21:58,619   creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta/tests/data
2026-06-01T22:21:58,621   creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:21:58,623   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:21:58,625   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:21:58,627   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:21:58,629   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:21:58,632   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:21:58,634   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt
2026-06-01T22:21:58,636   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/_unifrac.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta
2026-06-01T22:21:58,639   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta
2026-06-01T22:21:58,642   creating build/bdist.linux-armv7l/wheel/skbio/diversity/tests
2026-06-01T22:21:58,644   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/test_driver.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests
2026-06-01T22:21:58,648   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/test_block.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests
2026-06-01T22:21:58,650   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests
2026-06-01T22:21:58,653   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests
2026-06-01T22:21:58,655   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity
2026-06-01T22:21:58,659   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_block.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity
2026-06-01T22:21:58,661   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_util.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity
2026-06-01T22:21:58,664   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_driver.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity
2026-06-01T22:21:58,667   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/diversity
2026-06-01T22:21:58,677   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.pyx -> build/bdist.linux-armv7l/wheel/./skbio/diversity
2026-06-01T22:21:58,681   creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha
2026-06-01T22:21:58,682   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_ace.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha
2026-06-01T22:21:58,685   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_gini.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha
2026-06-01T22:21:58,688   creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha/tests
2026-06-01T22:21:58,689   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_pd.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests
2026-06-01T22:21:58,693   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests
2026-06-01T22:21:58,695   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_ace.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests
2026-06-01T22:21:58,697   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_lladser.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests
2026-06-01T22:21:58,700   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_chao1.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests
2026-06-01T22:21:58,703   creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha/tests/data
2026-06-01T22:21:58,705   creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha/tests/data/qiime-191-tt
2026-06-01T22:21:58,707   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt
2026-06-01T22:21:58,710   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt
2026-06-01T22:21:58,712   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt
2026-06-01T22:21:58,714   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt
2026-06-01T22:21:58,716   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests
2026-06-01T22:21:58,719   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_gini.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests
2026-06-01T22:21:58,721   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_chao1.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha
2026-06-01T22:21:58,724   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha
2026-06-01T22:21:58,727   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha
2026-06-01T22:21:58,730   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_lladser.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha
2026-06-01T22:21:58,733   copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_pd.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha
2026-06-01T22:21:58,737   creating build/bdist.linux-armv7l/wheel/skbio/util
2026-06-01T22:21:58,739   copying build/lib.linux-armv7l-cpython-311/skbio/util/_docstring.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,742   creating build/bdist.linux-armv7l/wheel/skbio/util/tests
2026-06-01T22:21:58,744   copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_testing.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests
2026-06-01T22:21:58,748   copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests
2026-06-01T22:21:58,750   copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_warning.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests
2026-06-01T22:21:58,752   copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_optionals.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests
2026-06-01T22:21:58,755   copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_docstring.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests
2026-06-01T22:21:58,758   copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_plotting.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests
2026-06-01T22:21:58,760   copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests
2026-06-01T22:21:58,763   copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_decorator.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests
2026-06-01T22:21:58,766   copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_random.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests
2026-06-01T22:21:58,768   copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_array.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests
2026-06-01T22:21:58,770   copying build/lib.linux-armv7l-cpython-311/skbio/util/_array.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,773   copying build/lib.linux-armv7l-cpython-311/skbio/util/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,775   copying build/lib.linux-armv7l-cpython-311/skbio/util/_plotting.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,777   copying build/lib.linux-armv7l-cpython-311/skbio/util/_typing.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,779   copying build/lib.linux-armv7l-cpython-311/skbio/util/_exception.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,781   copying build/lib.linux-armv7l-cpython-311/skbio/util/_optionals.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,783   copying build/lib.linux-armv7l-cpython-311/skbio/util/_random.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,784   copying build/lib.linux-armv7l-cpython-311/skbio/util/_decorator.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,787   copying build/lib.linux-armv7l-cpython-311/skbio/util/_warning.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,789   copying build/lib.linux-armv7l-cpython-311/skbio/util/_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,791   copying build/lib.linux-armv7l-cpython-311/skbio/util/_testing.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,794   copying build/lib.linux-armv7l-cpython-311/skbio/util/_gpu.py -> build/bdist.linux-armv7l/wheel/./skbio/util
2026-06-01T22:21:58,795   running install_egg_info
2026-06-01T22:21:58,802   Copying scikit_bio.egg-info to build/bdist.linux-armv7l/wheel/./scikit_bio-0.7.3-py3.11.egg-info
2026-06-01T22:21:58,814   running install_scripts
2026-06-01T22:21:58,859   creating build/bdist.linux-armv7l/wheel/scikit_bio-0.7.3.dist-info/WHEEL
2026-06-01T22:21:58,863   creating '/tmp/pip-wheel-w8ol2vwr/.tmp-k3u7xdkv/scikit_bio-0.7.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-01T22:21:58,866   adding 'scikit_bio-0.7.3.dist-info/licenses/LICENSE.txt'
2026-06-01T22:21:58,868   adding 'skbio/__init__.py'
2026-06-01T22:21:58,869   adding 'skbio/_base.py'
2026-06-01T22:21:58,871   adding 'skbio/_config.py'
2026-06-01T22:21:58,872   adding 'skbio/test.py'
2026-06-01T22:21:58,875   adding 'skbio/workflow.py'
2026-06-01T22:21:58,878   adding 'skbio/alignment/__init__.py'
2026-06-01T22:21:58,985   adding 'skbio/alignment/_cutils.c'
2026-06-01T22:21:59,239   adding 'skbio/alignment/_cutils.cpython-311-arm-linux-gnueabihf.so'
2026-06-01T22:21:59,249   adding 'skbio/alignment/_cutils.pyx'
2026-06-01T22:21:59,251   adding 'skbio/alignment/_distance.py'
2026-06-01T22:21:59,253   adding 'skbio/alignment/_indexing.py'
2026-06-01T22:21:59,259   adding 'skbio/alignment/_pair.py'
2026-06-01T22:21:59,263   adding 'skbio/alignment/_pairwise.py'
2026-06-01T22:21:59,268   adding 'skbio/alignment/_path.py'
2026-06-01T22:21:59,270   adding 'skbio/alignment/_repr.py'
2026-06-01T22:21:59,271   adding 'skbio/alignment/_score.py'
2026-06-01T22:21:59,280   adding 'skbio/alignment/_tabular_msa.py'
2026-06-01T22:21:59,283   adding 'skbio/alignment/_utils.py'
2026-06-01T22:21:59,286   adding 'skbio/alignment/tests/__init__.py'
2026-06-01T22:21:59,288   adding 'skbio/alignment/tests/test_distance.py'
2026-06-01T22:21:59,293   adding 'skbio/alignment/tests/test_pair.py'
2026-06-01T22:21:59,297   adding 'skbio/alignment/tests/test_pairwise.py'
2026-06-01T22:21:59,301   adding 'skbio/alignment/tests/test_path.py'
2026-06-01T22:21:59,303   adding 'skbio/alignment/tests/test_score.py'
2026-06-01T22:21:59,313   adding 'skbio/alignment/tests/test_tabular_msa.py'
2026-06-01T22:21:59,316   adding 'skbio/alignment/tests/test_utils.py'
2026-06-01T22:21:59,319   adding 'skbio/alignment/tests/data/16s.frn'
2026-06-01T22:21:59,320   adding 'skbio/alignment/tests/data/il6.nucl.aln'
2026-06-01T22:21:59,322   adding 'skbio/alignment/tests/data/il6.prot.aln'
2026-06-01T22:21:59,323   adding 'skbio/alignment/tests/data/insulin.faa'
2026-06-01T22:21:59,325   adding 'skbio/alignment/tests/data/tp53.nucl.aln'
2026-06-01T22:21:59,326   adding 'skbio/alignment/tests/data/tp53.prot.aln'
2026-06-01T22:21:59,328   adding 'skbio/binaries/__init__.py'
2026-06-01T22:21:59,330   adding 'skbio/binaries/_distance.py'
2026-06-01T22:21:59,332   adding 'skbio/binaries/_ordination.py'
2026-06-01T22:21:59,333   adding 'skbio/binaries/_util.py'
2026-06-01T22:21:59,335   adding 'skbio/binaries/tests/test_util.py'
2026-06-01T22:21:59,339   adding 'skbio/diversity/__init__.py'
2026-06-01T22:21:59,341   adding 'skbio/diversity/_block.py'
2026-06-01T22:21:59,343   adding 'skbio/diversity/_driver.py'
2026-06-01T22:21:59,392   adding 'skbio/diversity/_phylogenetic.c'
2026-06-01T22:21:59,473   adding 'skbio/diversity/_phylogenetic.cpython-311-arm-linux-gnueabihf.so'
2026-06-01T22:21:59,477   adding 'skbio/diversity/_phylogenetic.pyx'
2026-06-01T22:21:59,478   adding 'skbio/diversity/_util.py'
2026-06-01T22:21:59,481   adding 'skbio/diversity/alpha/__init__.py'
2026-06-01T22:21:59,482   adding 'skbio/diversity/alpha/_ace.py'
2026-06-01T22:21:59,487   adding 'skbio/diversity/alpha/_base.py'
2026-06-01T22:21:59,489   adding 'skbio/diversity/alpha/_chao1.py'
2026-06-01T22:21:59,490   adding 'skbio/diversity/alpha/_gini.py'
2026-06-01T22:21:59,493   adding 'skbio/diversity/alpha/_lladser.py'
2026-06-01T22:21:59,495   adding 'skbio/diversity/alpha/_pd.py'
2026-06-01T22:21:59,497   adding 'skbio/diversity/alpha/tests/__init__.py'
2026-06-01T22:21:59,499   adding 'skbio/diversity/alpha/tests/test_ace.py'
2026-06-01T22:21:59,501   adding 'skbio/diversity/alpha/tests/test_base.py'
2026-06-01T22:21:59,502   adding 'skbio/diversity/alpha/tests/test_chao1.py'
2026-06-01T22:21:59,504   adding 'skbio/diversity/alpha/tests/test_gini.py'
2026-06-01T22:21:59,505   adding 'skbio/diversity/alpha/tests/test_lladser.py'
2026-06-01T22:21:59,508   adding 'skbio/diversity/alpha/tests/test_pd.py'
2026-06-01T22:21:59,510   adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/README.md'
2026-06-01T22:21:59,511   adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt'
2026-06-01T22:21:59,512   adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv'
2026-06-01T22:21:59,513   adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk'
2026-06-01T22:21:59,515   adding 'skbio/diversity/beta/__init__.py'
2026-06-01T22:21:59,518   adding 'skbio/diversity/beta/_unifrac.py'
2026-06-01T22:21:59,520   adding 'skbio/diversity/beta/tests/__init__.py'
2026-06-01T22:21:59,522   adding 'skbio/diversity/beta/tests/test_unifrac.py'
2026-06-01T22:21:59,525   adding 'skbio/diversity/beta/tests/data/qiime-191-tt/README.md'
2026-06-01T22:21:59,526   adding 'skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv'
2026-06-01T22:21:59,527   adding 'skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk'
2026-06-01T22:21:59,528   adding 'skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt'
2026-06-01T22:21:59,529   adding 'skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt'
2026-06-01T22:21:59,531   adding 'skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt'
2026-06-01T22:21:59,532   adding 'skbio/diversity/tests/__init__.py'
2026-06-01T22:21:59,534   adding 'skbio/diversity/tests/test_block.py'
2026-06-01T22:21:59,537   adding 'skbio/diversity/tests/test_driver.py'
2026-06-01T22:21:59,539   adding 'skbio/diversity/tests/test_util.py'
2026-06-01T22:21:59,541   adding 'skbio/embedding/__init__.py'
2026-06-01T22:21:59,543   adding 'skbio/embedding/_embedding.py'
2026-06-01T22:21:59,545   adding 'skbio/embedding/_protein.py'
2026-06-01T22:21:59,547   adding 'skbio/embedding/tests/__init__.py'
2026-06-01T22:21:59,548   adding 'skbio/embedding/tests/test_embedding.py'
2026-06-01T22:21:59,550   adding 'skbio/embedding/tests/test_protein.py'
2026-06-01T22:21:59,588   adding 'skbio/embedding/tests/data/embed1.txt.npy'
2026-06-01T22:21:59,592   adding 'skbio/io/__init__.py'
2026-06-01T22:21:59,593   adding 'skbio/io/_exception.py'
2026-06-01T22:21:59,595   adding 'skbio/io/_fileobject.py'
2026-06-01T22:21:59,596   adding 'skbio/io/_iosources.py'
2026-06-01T22:21:59,598   adding 'skbio/io/_warning.py'
2026-06-01T22:21:59,599   adding 'skbio/io/descriptors.py'
2026-06-01T22:21:59,604   adding 'skbio/io/registry.py'
2026-06-01T22:21:59,606   adding 'skbio/io/util.py'
2026-06-01T22:21:59,609   adding 'skbio/io/format/__init__.py'
2026-06-01T22:21:59,610   adding 'skbio/io/format/_base.py'
2026-06-01T22:21:59,612   adding 'skbio/io/format/_blast.py'
2026-06-01T22:21:59,614   adding 'skbio/io/format/_sequence_feature_vocabulary.py'
2026-06-01T22:21:59,616   adding 'skbio/io/format/binary_dm.py'
2026-06-01T22:21:59,617   adding 'skbio/io/format/biom.py'
2026-06-01T22:21:59,619   adding 'skbio/io/format/blast6.py'
2026-06-01T22:21:59,621   adding 'skbio/io/format/blast7.py'
2026-06-01T22:21:59,623   adding 'skbio/io/format/clustal.py'
2026-06-01T22:21:59,626   adding 'skbio/io/format/embed.py'
2026-06-01T22:21:59,632   adding 'skbio/io/format/embl.py'
2026-06-01T22:21:59,634   adding 'skbio/io/format/emptyfile.py'
2026-06-01T22:21:59,639   adding 'skbio/io/format/fasta.py'
2026-06-01T22:21:59,641   adding 'skbio/io/format/fastq.py'
2026-06-01T22:21:59,645   adding 'skbio/io/format/genbank.py'
2026-06-01T22:21:59,648   adding 'skbio/io/format/gff3.py'
2026-06-01T22:21:59,650   adding 'skbio/io/format/lsmat.py'
2026-06-01T22:21:59,652   adding 'skbio/io/format/newick.py'
2026-06-01T22:21:59,655   adding 'skbio/io/format/ordination.py'
2026-06-01T22:21:59,657   adding 'skbio/io/format/phylip.py'
2026-06-01T22:21:59,660   adding 'skbio/io/format/phylip_dm.py'
2026-06-01T22:21:59,662   adding 'skbio/io/format/qseq.py'
2026-06-01T22:21:59,664   adding 'skbio/io/format/sample_metadata.py'
2026-06-01T22:21:59,667   adding 'skbio/io/format/stockholm.py'
2026-06-01T22:21:59,670   adding 'skbio/io/format/taxdump.py'
2026-06-01T22:21:59,672   adding 'skbio/io/format/tests/__init__.py'
2026-06-01T22:21:59,674   adding 'skbio/io/format/tests/test_base.py'
2026-06-01T22:21:59,675   adding 'skbio/io/format/tests/test_binary_dm.py'
2026-06-01T22:21:59,676   adding 'skbio/io/format/tests/test_biom.py'
2026-06-01T22:21:59,678   adding 'skbio/io/format/tests/test_blast6.py'
2026-06-01T22:21:59,680   adding 'skbio/io/format/tests/test_blast7.py'
2026-06-01T22:21:59,681   adding 'skbio/io/format/tests/test_clustal.py'
2026-06-01T22:21:59,683   adding 'skbio/io/format/tests/test_embed.py'
2026-06-01T22:21:59,687   adding 'skbio/io/format/tests/test_embl.py'
2026-06-01T22:21:59,688   adding 'skbio/io/format/tests/test_emptyfile.py'
2026-06-01T22:21:59,692   adding 'skbio/io/format/tests/test_fasta.py'
2026-06-01T22:21:59,695   adding 'skbio/io/format/tests/test_fastq.py'
2026-06-01T22:21:59,697   adding 'skbio/io/format/tests/test_genbank.py'
2026-06-01T22:21:59,699   adding 'skbio/io/format/tests/test_gff3.py'
2026-06-01T22:21:59,701   adding 'skbio/io/format/tests/test_lsmat.py'
2026-06-01T22:21:59,703   adding 'skbio/io/format/tests/test_newick.py'
2026-06-01T22:21:59,705   adding 'skbio/io/format/tests/test_ordination.py'
2026-06-01T22:21:59,707   adding 'skbio/io/format/tests/test_phylip.py'
2026-06-01T22:21:59,709   adding 'skbio/io/format/tests/test_phylip_dm.py'
2026-06-01T22:21:59,711   adding 'skbio/io/format/tests/test_qseq.py'
2026-06-01T22:21:59,712   adding 'skbio/io/format/tests/test_sample_metadata.py'
2026-06-01T22:21:59,714   adding 'skbio/io/format/tests/test_sequence_feature_vocabulary.py'
2026-06-01T22:21:59,717   adding 'skbio/io/format/tests/test_stockholm.py'
2026-06-01T22:21:59,718   adding 'skbio/io/format/tests/test_taxdump.py'
2026-06-01T22:21:59,727   adding 'skbio/io/format/tests/data/blast6_custom_minimal'
2026-06-01T22:21:59,728   adding 'skbio/io/format/tests/data/blast6_custom_mixed_nans'
2026-06-01T22:21:59,729   adding 'skbio/io/format/tests/data/blast6_custom_multi_line'
2026-06-01T22:21:59,730   adding 'skbio/io/format/tests/data/blast6_custom_single_line'
2026-06-01T22:21:59,731   adding 'skbio/io/format/tests/data/blast6_default_multi_line'
2026-06-01T22:21:59,732   adding 'skbio/io/format/tests/data/blast6_default_single_line'
2026-06-01T22:21:59,734   adding 'skbio/io/format/tests/data/blast6_invalid_column_types'
2026-06-01T22:21:59,735   adding 'skbio/io/format/tests/data/blast6_invalid_number_of_columns'
2026-06-01T22:21:59,736   adding 'skbio/io/format/tests/data/blast6_invalid_type_in_column'
2026-06-01T22:21:59,737   adding 'skbio/io/format/tests/data/blast7_custom_minimal'
2026-06-01T22:21:59,738   adding 'skbio/io/format/tests/data/blast7_custom_mixed_nans'
2026-06-01T22:21:59,739   adding 'skbio/io/format/tests/data/blast7_custom_multi_line'
2026-06-01T22:21:59,741   adding 'skbio/io/format/tests/data/blast7_custom_single_line'
2026-06-01T22:21:59,742   adding 'skbio/io/format/tests/data/blast7_default_multi_line'
2026-06-01T22:21:59,743   adding 'skbio/io/format/tests/data/blast7_default_single_line'
2026-06-01T22:21:59,744   adding 'skbio/io/format/tests/data/blast7_invalid_differing_fields'
2026-06-01T22:21:59,745   adding 'skbio/io/format/tests/data/blast7_invalid_for_sniffer'
2026-06-01T22:21:59,746   adding 'skbio/io/format/tests/data/blast7_invalid_for_sniffer_2'
2026-06-01T22:21:59,747   adding 'skbio/io/format/tests/data/blast7_invalid_gibberish'
2026-06-01T22:21:59,748   adding 'skbio/io/format/tests/data/blast7_invalid_no_data'
2026-06-01T22:21:59,750   adding 'skbio/io/format/tests/data/blast7_invalid_too_many_columns'
2026-06-01T22:21:59,751   adding 'skbio/io/format/tests/data/blast7_invalid_unrecognized_field'
2026-06-01T22:21:59,788   adding 'skbio/io/format/tests/data/embed1.txt.npy'
2026-06-01T22:21:59,827   adding 'skbio/io/format/tests/data/embed2.txt.npy'
2026-06-01T22:21:59,830   adding 'skbio/io/format/tests/data/embl_constructed'
2026-06-01T22:21:59,832   adding 'skbio/io/format/tests/data/embl_feature_level_record'
2026-06-01T22:21:59,834   adding 'skbio/io/format/tests/data/embl_feature_level_record_no_FT'
2026-06-01T22:21:59,835   adding 'skbio/io/format/tests/data/embl_multi_records'
2026-06-01T22:21:59,837   adding 'skbio/io/format/tests/data/embl_single_record'
2026-06-01T22:21:59,838   adding 'skbio/io/format/tests/data/embl_single_record_lower'
2026-06-01T22:21:59,840   adding 'skbio/io/format/tests/data/embl_single_record_simple'
2026-06-01T22:21:59,841   adding 'skbio/io/format/tests/data/embl_single_record_upper'
2026-06-01T22:21:59,842   adding 'skbio/io/format/tests/data/embl_uniprot_record'
2026-06-01T22:21:59,843   adding 'skbio/io/format/tests/data/embl_w_beginning_whitespace'
2026-06-01T22:21:59,845   adding 'skbio/io/format/tests/data/empty'
2026-06-01T22:21:59,846   adding 'skbio/io/format/tests/data/error_diff_ids.fastq'
2026-06-01T22:21:59,847   adding 'skbio/io/format/tests/data/error_double_qual.fastq'
2026-06-01T22:21:59,848   adding 'skbio/io/format/tests/data/error_double_seq.fastq'
2026-06-01T22:21:59,849   adding 'skbio/io/format/tests/data/error_long_qual.fastq'
2026-06-01T22:21:59,851   adding 'skbio/io/format/tests/data/error_no_qual.fastq'
2026-06-01T22:21:59,852   adding 'skbio/io/format/tests/data/error_qual_del.fastq'
2026-06-01T22:21:59,853   adding 'skbio/io/format/tests/data/error_qual_escape.fastq'
2026-06-01T22:21:59,854   adding 'skbio/io/format/tests/data/error_qual_null.fastq'
2026-06-01T22:21:59,856   adding 'skbio/io/format/tests/data/error_qual_space.fastq'
2026-06-01T22:21:59,857   adding 'skbio/io/format/tests/data/error_qual_tab.fastq'
2026-06-01T22:21:59,858   adding 'skbio/io/format/tests/data/error_qual_unit_sep.fastq'
2026-06-01T22:21:59,859   adding 'skbio/io/format/tests/data/error_qual_vtab.fastq'
2026-06-01T22:21:59,860   adding 'skbio/io/format/tests/data/error_short_qual.fastq'
2026-06-01T22:21:59,862   adding 'skbio/io/format/tests/data/error_spaces.fastq'
2026-06-01T22:21:59,863   adding 'skbio/io/format/tests/data/error_tabs.fastq'
2026-06-01T22:21:59,864   adding 'skbio/io/format/tests/data/error_trunc_at_plus.fastq'
2026-06-01T22:21:59,865   adding 'skbio/io/format/tests/data/error_trunc_at_qual.fastq'
2026-06-01T22:21:59,866   adding 'skbio/io/format/tests/data/error_trunc_at_seq.fastq'
2026-06-01T22:21:59,867   adding 'skbio/io/format/tests/data/error_trunc_in_plus.fastq'
2026-06-01T22:21:59,868   adding 'skbio/io/format/tests/data/error_trunc_in_qual.fastq'
2026-06-01T22:21:59,869   adding 'skbio/io/format/tests/data/error_trunc_in_seq.fastq'
2026-06-01T22:21:59,871   adding 'skbio/io/format/tests/data/error_trunc_in_title.fastq'
2026-06-01T22:21:59,872   adding 'skbio/io/format/tests/data/fasta_10_seqs'
2026-06-01T22:21:59,873   adding 'skbio/io/format/tests/data/fasta_3_seqs_defaults'
2026-06-01T22:21:59,874   adding 'skbio/io/format/tests/data/fasta_3_seqs_non_defaults'
2026-06-01T22:21:59,875   adding 'skbio/io/format/tests/data/fasta_5_blanks_start_of_file'
2026-06-01T22:21:59,876   adding 'skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file'
2026-06-01T22:21:59,877   adding 'skbio/io/format/tests/data/fasta_6_blanks_start_of_file'
2026-06-01T22:21:59,878   adding 'skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file'
2026-06-01T22:21:59,880   adding 'skbio/io/format/tests/data/fasta_blank_lines_between_records'
2026-06-01T22:21:59,881   adding 'skbio/io/format/tests/data/fasta_blanks_end_of_file'
2026-06-01T22:21:59,882   adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str'
2026-06-01T22:21:59,883   adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char'
2026-06-01T22:21:59,884   adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_none'
2026-06-01T22:21:59,885   adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str'
2026-06-01T22:21:59,887   adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char'
2026-06-01T22:21:59,888   adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_none'
2026-06-01T22:21:59,889   adding 'skbio/io/format/tests/data/fasta_invalid_after_10_seqs'
2026-06-01T22:21:59,890   adding 'skbio/io/format/tests/data/fasta_invalid_blank_line_after_header'
2026-06-01T22:21:59,891   adding 'skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence'
2026-06-01T22:21:59,892   adding 'skbio/io/format/tests/data/fasta_invalid_blank_sequence'
2026-06-01T22:21:59,893   adding 'skbio/io/format/tests/data/fasta_invalid_legacy_format'
2026-06-01T22:21:59,895   adding 'skbio/io/format/tests/data/fasta_invalid_missing_header'
2026-06-01T22:21:59,896   adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first'
2026-06-01T22:21:59,897   adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last'
2026-06-01T22:21:59,898   adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle'
2026-06-01T22:21:59,899   adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header'
2026-06-01T22:21:59,900   adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence'
2026-06-01T22:21:59,901   adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence'
2026-06-01T22:21:59,903   adding 'skbio/io/format/tests/data/fasta_max_width_1'
2026-06-01T22:21:59,904   adding 'skbio/io/format/tests/data/fasta_max_width_5'
2026-06-01T22:21:59,905   adding 'skbio/io/format/tests/data/fasta_mixed_qual_scores'
2026-06-01T22:21:59,906   adding 'skbio/io/format/tests/data/fasta_multi_seq'
2026-06-01T22:21:59,907   adding 'skbio/io/format/tests/data/fasta_multi_seq_roundtrip'
2026-06-01T22:21:59,909   adding 'skbio/io/format/tests/data/fasta_multi_seq_spaces'
2026-06-01T22:21:59,910   adding 'skbio/io/format/tests/data/fasta_prot_seqs_odd_labels'
2026-06-01T22:21:59,911   adding 'skbio/io/format/tests/data/fasta_single_bio_seq_defaults'
2026-06-01T22:21:59,912   adding 'skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults'
2026-06-01T22:21:59,913   adding 'skbio/io/format/tests/data/fasta_single_dna_seq_defaults'
2026-06-01T22:21:59,914   adding 'skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults'
2026-06-01T22:21:59,915   adding 'skbio/io/format/tests/data/fasta_single_prot_seq_defaults'
2026-06-01T22:21:59,916   adding 'skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults'
2026-06-01T22:21:59,917   adding 'skbio/io/format/tests/data/fasta_single_rna_seq_defaults'
2026-06-01T22:21:59,918   adding 'skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults'
2026-06-01T22:21:59,919   adding 'skbio/io/format/tests/data/fasta_single_seq'
2026-06-01T22:21:59,921   adding 'skbio/io/format/tests/data/fasta_tabular_msa_different_type'
2026-06-01T22:21:59,922   adding 'skbio/io/format/tests/data/fasta_ws_lines_between_records'
2026-06-01T22:21:59,923   adding 'skbio/io/format/tests/data/fasta_ws_lines_end_of_file'
2026-06-01T22:21:59,924   adding 'skbio/io/format/tests/data/fastq_5_blanks_start_of_file'
2026-06-01T22:21:59,925   adding 'skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file'
2026-06-01T22:21:59,926   adding 'skbio/io/format/tests/data/fastq_blank_lines'
2026-06-01T22:21:59,927   adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_header'
2026-06-01T22:21:59,929   adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_plus'
2026-06-01T22:21:59,930   adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_seq'
2026-06-01T22:21:59,931   adding 'skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol'
2026-06-01T22:21:59,932   adding 'skbio/io/format/tests/data/fastq_invalid_blank_within_qual'
2026-06-01T22:21:59,933   adding 'skbio/io/format/tests/data/fastq_invalid_blank_within_seq'
2026-06-01T22:21:59,934   adding 'skbio/io/format/tests/data/fastq_invalid_missing_header'
2026-06-01T22:21:59,935   adding 'skbio/io/format/tests/data/fastq_invalid_missing_seq_data'
2026-06-01T22:21:59,937   adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_header'
2026-06-01T22:21:59,938   adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus'
2026-06-01T22:21:59,939   adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq'
2026-06-01T22:21:59,940   adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual'
2026-06-01T22:21:59,941   adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq'
2026-06-01T22:21:59,942   adding 'skbio/io/format/tests/data/fastq_multi_blank_between_records'
2026-06-01T22:21:59,944   adding 'skbio/io/format/tests/data/fastq_multi_blank_end_of_file'
2026-06-01T22:21:59,945   adding 'skbio/io/format/tests/data/fastq_multi_blank_start_of_file'
2026-06-01T22:21:59,946   adding 'skbio/io/format/tests/data/fastq_multi_seq_sanger'
2026-06-01T22:21:59,947   adding 'skbio/io/format/tests/data/fastq_multi_whitespace_stripping'
2026-06-01T22:21:59,948   adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_between_records'
2026-06-01T22:21:59,949   adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file'
2026-06-01T22:21:59,951   adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file'
2026-06-01T22:21:59,952   adding 'skbio/io/format/tests/data/fastq_single_seq_illumina1.3'
2026-06-01T22:21:59,953   adding 'skbio/io/format/tests/data/fastq_single_seq_illumina1.8'
2026-06-01T22:21:59,954   adding 'skbio/io/format/tests/data/fastq_whitespace_only_lines'
2026-06-01T22:21:59,955   adding 'skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description'
2026-06-01T22:21:59,957   adding 'skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description'
2026-06-01T22:21:59,958   adding 'skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description'
2026-06-01T22:21:59,959   adding 'skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults'
2026-06-01T22:21:59,960   adding 'skbio/io/format/tests/data/fastq_writer_sanger_defaults'
2026-06-01T22:21:59,961   adding 'skbio/io/format/tests/data/fastq_writer_sanger_non_defaults'
2026-06-01T22:21:59,962   adding 'skbio/io/format/tests/data/genbank_5_blanks_start_of_file'
2026-06-01T22:21:59,963   adding 'skbio/io/format/tests/data/genbank_6_blanks_start_of_file'
2026-06-01T22:21:59,964   adding 'skbio/io/format/tests/data/genbank_missing_locus_name'
2026-06-01T22:21:59,966   adding 'skbio/io/format/tests/data/genbank_multi_records'
2026-06-01T22:21:59,967   adding 'skbio/io/format/tests/data/genbank_single_record'
2026-06-01T22:21:59,968   adding 'skbio/io/format/tests/data/genbank_single_record_lower'
2026-06-01T22:21:59,969   adding 'skbio/io/format/tests/data/genbank_single_record_upper'
2026-06-01T22:21:59,970   adding 'skbio/io/format/tests/data/genbank_w_beginning_whitespace'
2026-06-01T22:21:59,971   adding 'skbio/io/format/tests/data/gff3_bad_missing_directive'
2026-06-01T22:21:59,973   adding 'skbio/io/format/tests/data/gff3_bad_wrong_columns'
2026-06-01T22:21:59,974   adding 'skbio/io/format/tests/data/gff3_dna'
2026-06-01T22:21:59,975   adding 'skbio/io/format/tests/data/gff3_multi_record'
2026-06-01T22:21:59,977   adding 'skbio/io/format/tests/data/gff3_single_record'
2026-06-01T22:21:59,978   adding 'skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq'
2026-06-01T22:21:59,979   adding 'skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq'
2026-06-01T22:21:59,980   adding 'skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq'
2026-06-01T22:21:59,981   adding 'skbio/io/format/tests/data/legacy9_and_blast7_default'
2026-06-01T22:21:59,982   adding 'skbio/io/format/tests/data/legacy9_invalid_differing_fields'
2026-06-01T22:21:59,983   adding 'skbio/io/format/tests/data/legacy9_invalid_too_many_columns'
2026-06-01T22:21:59,985   adding 'skbio/io/format/tests/data/legacy9_mixed_nans'
2026-06-01T22:21:59,986   adding 'skbio/io/format/tests/data/legacy9_multi_line'
2026-06-01T22:21:59,987   adding 'skbio/io/format/tests/data/legacy9_single_line'
2026-06-01T22:21:59,989   adding 'skbio/io/format/tests/data/longreads_as_illumina.fastq'
2026-06-01T22:21:59,991   adding 'skbio/io/format/tests/data/longreads_as_sanger.fastq'
2026-06-01T22:21:59,994   adding 'skbio/io/format/tests/data/longreads_original_sanger.fastq'
2026-06-01T22:21:59,995   adding 'skbio/io/format/tests/data/misc_dna_as_illumina.fastq'
2026-06-01T22:21:59,996   adding 'skbio/io/format/tests/data/misc_dna_as_sanger.fastq'
2026-06-01T22:21:59,997   adding 'skbio/io/format/tests/data/misc_dna_original_sanger.fastq'
2026-06-01T22:21:59,999   adding 'skbio/io/format/tests/data/misc_rna_as_illumina.fastq'
2026-06-01T22:22:00,000   adding 'skbio/io/format/tests/data/misc_rna_as_sanger.fastq'
2026-06-01T22:22:00,001   adding 'skbio/io/format/tests/data/misc_rna_original_sanger.fastq'
2026-06-01T22:22:00,002   adding 'skbio/io/format/tests/data/ordination_L&L_CA_data_scores'
2026-06-01T22:22:00,004   adding 'skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores'
2026-06-01T22:22:00,005   adding 'skbio/io/format/tests/data/ordination_error1'
2026-06-01T22:22:00,006   adding 'skbio/io/format/tests/data/ordination_error10'
2026-06-01T22:22:00,008   adding 'skbio/io/format/tests/data/ordination_error11'
2026-06-01T22:22:00,009   adding 'skbio/io/format/tests/data/ordination_error12'
2026-06-01T22:22:00,011   adding 'skbio/io/format/tests/data/ordination_error13'
2026-06-01T22:22:00,012   adding 'skbio/io/format/tests/data/ordination_error14'
2026-06-01T22:22:00,013   adding 'skbio/io/format/tests/data/ordination_error15'
2026-06-01T22:22:00,015   adding 'skbio/io/format/tests/data/ordination_error16'
2026-06-01T22:22:00,016   adding 'skbio/io/format/tests/data/ordination_error17'
2026-06-01T22:22:00,018   adding 'skbio/io/format/tests/data/ordination_error18'
2026-06-01T22:22:00,019   adding 'skbio/io/format/tests/data/ordination_error19'
2026-06-01T22:22:00,020   adding 'skbio/io/format/tests/data/ordination_error2'
2026-06-01T22:22:00,021   adding 'skbio/io/format/tests/data/ordination_error20'
2026-06-01T22:22:00,022   adding 'skbio/io/format/tests/data/ordination_error21'
2026-06-01T22:22:00,023   adding 'skbio/io/format/tests/data/ordination_error22'
2026-06-01T22:22:00,024   adding 'skbio/io/format/tests/data/ordination_error23'
2026-06-01T22:22:00,026   adding 'skbio/io/format/tests/data/ordination_error24'
2026-06-01T22:22:00,027   adding 'skbio/io/format/tests/data/ordination_error3'
2026-06-01T22:22:00,028   adding 'skbio/io/format/tests/data/ordination_error4'
2026-06-01T22:22:00,030   adding 'skbio/io/format/tests/data/ordination_error5'
2026-06-01T22:22:00,031   adding 'skbio/io/format/tests/data/ordination_error6'
2026-06-01T22:22:00,033   adding 'skbio/io/format/tests/data/ordination_error7'
2026-06-01T22:22:00,034   adding 'skbio/io/format/tests/data/ordination_error8'
2026-06-01T22:22:00,035   adding 'skbio/io/format/tests/data/ordination_error9'
2026-06-01T22:22:00,037   adding 'skbio/io/format/tests/data/ordination_example2_scores'
2026-06-01T22:22:00,038   adding 'skbio/io/format/tests/data/ordination_example3_scores'
2026-06-01T22:22:00,040   adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site'
2026-06-01T22:22:00,041   adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints'
2026-06-01T22:22:00,042   adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species'
2026-06-01T22:22:00,044   adding 'skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site'
2026-06-01T22:22:00,045   adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site'
2026-06-01T22:22:00,046   adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints'
2026-06-01T22:22:00,048   adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species'
2026-06-01T22:22:00,049   adding 'skbio/io/format/tests/data/pdb_hits.txt'
2026-06-01T22:22:00,050   adding 'skbio/io/format/tests/data/phylip_dm_good_simple_strict_square.dist'
2026-06-01T22:22:00,051   adding 'skbio/io/format/tests/data/phylip_dm_good_simple_strict_square_reader.dist'
2026-06-01T22:22:00,052   adding 'skbio/io/format/tests/data/phylip_dm_invalid_empty_line_after_header.dist'
2026-06-01T22:22:00,054   adding 'skbio/io/format/tests/data/phylip_dm_invalid_empty_line_before_header.dist'
2026-06-01T22:22:00,055   adding 'skbio/io/format/tests/data/phylip_dm_invalid_header_too_long.dist'
2026-06-01T22:22:00,056   adding 'skbio/io/format/tests/data/phylip_dm_invalid_no_dists.dist'
2026-06-01T22:22:00,058   adding 'skbio/io/format/tests/data/phylip_dm_invalid_no_header.dist'
2026-06-01T22:22:00,059   adding 'skbio/io/format/tests/data/phylip_dm_invalid_too_few_columns_sq.dist'
2026-06-01T22:22:00,060   adding 'skbio/io/format/tests/data/phylip_dm_invalid_too_few_rows.dist'
2026-06-01T22:22:00,061   adding 'skbio/io/format/tests/data/phylip_dm_invalid_too_many_columns.dist'
2026-06-01T22:22:00,062   adding 'skbio/io/format/tests/data/phylip_dm_invalid_too_many_rows.dist'
2026-06-01T22:22:00,063   adding 'skbio/io/format/tests/data/phylip_dm_invalid_wrong_number_dists_lt.dist'
2026-06-01T22:22:00,065   adding 'skbio/io/format/tests/data/phylip_dm_invalid_zero_header.dist'
2026-06-01T22:22:00,066   adding 'skbio/io/format/tests/data/phylip_dm_simple_lt.dist'
2026-06-01T22:22:00,067   adding 'skbio/io/format/tests/data/phylip_dm_simple_sq.dist'
2026-06-01T22:22:00,068   adding 'skbio/io/format/tests/data/phylip_dm_sq_invalid_empty_line_after_header.dist'
2026-06-01T22:22:00,069   adding 'skbio/io/format/tests/data/phylip_dm_sq_invalid_empty_line_before_header.dist'
2026-06-01T22:22:00,071   adding 'skbio/io/format/tests/data/phylip_dm_valid_lt.dist'
2026-06-01T22:22:00,072   adding 'skbio/io/format/tests/data/phylip_dm_valid_sq.dist'
2026-06-01T22:22:00,073   adding 'skbio/io/format/tests/data/phylip_dna_3_seqs'
2026-06-01T22:22:00,074   adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_after_header'
2026-06-01T22:22:00,076   adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_before_header'
2026-06-01T22:22:00,077   adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs'
2026-06-01T22:22:00,078   adding 'skbio/io/format/tests/data/phylip_invalid_header_too_long'
2026-06-01T22:22:00,079   adding 'skbio/io/format/tests/data/phylip_invalid_header_too_short'
2026-06-01T22:22:00,080   adding 'skbio/io/format/tests/data/phylip_invalid_no_header'
2026-06-01T22:22:00,081   adding 'skbio/io/format/tests/data/phylip_invalid_seq_too_long'
2026-06-01T22:22:00,082   adding 'skbio/io/format/tests/data/phylip_invalid_seq_too_short'
2026-06-01T22:22:00,083   adding 'skbio/io/format/tests/data/phylip_invalid_too_few_seqs'
2026-06-01T22:22:00,084   adding 'skbio/io/format/tests/data/phylip_invalid_too_many_seqs'
2026-06-01T22:22:00,085   adding 'skbio/io/format/tests/data/phylip_invalid_zero_seq_len'
2026-06-01T22:22:00,086   adding 'skbio/io/format/tests/data/phylip_invalid_zero_seqs'
2026-06-01T22:22:00,088   adding 'skbio/io/format/tests/data/phylip_single_seq_long'
2026-06-01T22:22:00,089   adding 'skbio/io/format/tests/data/phylip_single_seq_relaxed'
2026-06-01T22:22:00,090   adding 'skbio/io/format/tests/data/phylip_single_seq_short'
2026-06-01T22:22:00,091   adding 'skbio/io/format/tests/data/phylip_two_chunks'
2026-06-01T22:22:00,092   adding 'skbio/io/format/tests/data/phylip_variable_length_ids'
2026-06-01T22:22:00,093   adding 'skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs'
2026-06-01T22:22:00,094   adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_1'
2026-06-01T22:22:00,096   adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_2'
2026-06-01T22:22:00,097   adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_3'
2026-06-01T22:22:00,135   adding 'skbio/io/format/tests/data/prot.emb'
2026-06-01T22:22:00,139   adding 'skbio/io/format/tests/data/prot_vec.emb'
2026-06-01T22:22:00,140   adding 'skbio/io/format/tests/data/qseq_invalid_filter'
2026-06-01T22:22:00,141   adding 'skbio/io/format/tests/data/qseq_invalid_lane'
2026-06-01T22:22:00,146   adding 'skbio/io/format/tests/data/qseq_invalid_read'
2026-06-01T22:22:00,147   adding 'skbio/io/format/tests/data/qseq_invalid_tile'
2026-06-01T22:22:00,148   adding 'skbio/io/format/tests/data/qseq_invalid_x'
2026-06-01T22:22:00,149   adding 'skbio/io/format/tests/data/qseq_invalid_y'
2026-06-01T22:22:00,150   adding 'skbio/io/format/tests/data/qseq_multi_seq_illumina1.3'
2026-06-01T22:22:00,152   adding 'skbio/io/format/tests/data/qseq_single_seq_sanger'
2026-06-01T22:22:00,153   adding 'skbio/io/format/tests/data/qual_2_seqs_defaults'
2026-06-01T22:22:00,154   adding 'skbio/io/format/tests/data/qual_3_seqs_defaults'
2026-06-01T22:22:00,155   adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch'
2026-06-01T22:22:00,157   adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_extra'
2026-06-01T22:22:00,158   adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch'
2026-06-01T22:22:00,159   adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch'
2026-06-01T22:22:00,160   adding 'skbio/io/format/tests/data/qual_3_seqs_non_defaults'
2026-06-01T22:22:00,161   adding 'skbio/io/format/tests/data/qual_5_blanks_start_of_file'
2026-06-01T22:22:00,162   adding 'skbio/io/format/tests/data/qual_5_ws_lines_start_of_file'
2026-06-01T22:22:00,164   adding 'skbio/io/format/tests/data/qual_6_blanks_start_of_file'
2026-06-01T22:22:00,165   adding 'skbio/io/format/tests/data/qual_6_ws_lines_start_of_file'
2026-06-01T22:22:00,166   adding 'skbio/io/format/tests/data/qual_blank_lines_between_records'
2026-06-01T22:22:00,167   adding 'skbio/io/format/tests/data/qual_blanks_end_of_file'
2026-06-01T22:22:00,169   adding 'skbio/io/format/tests/data/qual_description_newline_replacement_empty_str'
2026-06-01T22:22:00,170   adding 'skbio/io/format/tests/data/qual_description_newline_replacement_multi_char'
2026-06-01T22:22:00,171   adding 'skbio/io/format/tests/data/qual_description_newline_replacement_none'
2026-06-01T22:22:00,172   adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str'
2026-06-01T22:22:00,173   adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char'
2026-06-01T22:22:00,174   adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_none'
2026-06-01T22:22:00,175   adding 'skbio/io/format/tests/data/qual_invalid_blank_line_after_header'
2026-06-01T22:22:00,176   adding 'skbio/io/format/tests/data/qual_invalid_blank_line_within_seq'
2026-06-01T22:22:00,178   adding 'skbio/io/format/tests/data/qual_invalid_blank_sequence'
2026-06-01T22:22:00,179   adding 'skbio/io/format/tests/data/qual_invalid_legacy_format'
2026-06-01T22:22:00,180   adding 'skbio/io/format/tests/data/qual_invalid_missing_header'
2026-06-01T22:22:00,181   adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first'
2026-06-01T22:22:00,182   adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last'
2026-06-01T22:22:00,183   adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle'
2026-06-01T22:22:00,184   adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_float'
2026-06-01T22:22:00,186   adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_negative'
2026-06-01T22:22:00,187   adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_over_255'
2026-06-01T22:22:00,188   adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_string'
2026-06-01T22:22:00,189   adding 'skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq'
2026-06-01T22:22:00,190   adding 'skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence'
2026-06-01T22:22:00,191   adding 'skbio/io/format/tests/data/qual_invalid_ws_line_after_header'
2026-06-01T22:22:00,192   adding 'skbio/io/format/tests/data/qual_max_width_1'
2026-06-01T22:22:00,193   adding 'skbio/io/format/tests/data/qual_max_width_5'
2026-06-01T22:22:00,195   adding 'skbio/io/format/tests/data/qual_multi_seq'
2026-06-01T22:22:00,196   adding 'skbio/io/format/tests/data/qual_multi_seq_roundtrip'
2026-06-01T22:22:00,197   adding 'skbio/io/format/tests/data/qual_prot_seqs_odd_labels'
2026-06-01T22:22:00,198   adding 'skbio/io/format/tests/data/qual_single_bio_seq_non_defaults'
2026-06-01T22:22:00,199   adding 'skbio/io/format/tests/data/qual_single_dna_seq_non_defaults'
2026-06-01T22:22:00,200   adding 'skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults'
2026-06-01T22:22:00,201   adding 'skbio/io/format/tests/data/qual_single_prot_seq_non_defaults'
2026-06-01T22:22:00,202   adding 'skbio/io/format/tests/data/qual_single_rna_seq_non_defaults'
2026-06-01T22:22:00,204   adding 'skbio/io/format/tests/data/qual_single_seq'
2026-06-01T22:22:00,205   adding 'skbio/io/format/tests/data/qual_tabular_msa_different_type'
2026-06-01T22:22:00,206   adding 'skbio/io/format/tests/data/qual_ws_lines_between_records'
2026-06-01T22:22:00,207   adding 'skbio/io/format/tests/data/qual_ws_lines_end_of_file'
2026-06-01T22:22:00,208   adding 'skbio/io/format/tests/data/sample-metadata-comments-comment-char-id.tsv'
2026-06-01T22:22:00,210   adding 'skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv'
2026-06-01T22:22:00,211   adding 'skbio/io/format/tests/data/sample-metadata-comments.tsv'
2026-06-01T22:22:00,212   adding 'skbio/io/format/tests/data/sample-metadata-complete-types-directive.tsv'
2026-06-01T22:22:00,213   adding 'skbio/io/format/tests/data/sample-metadata-empty-rows.tsv'
2026-06-01T22:22:00,214   adding 'skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv'
2026-06-01T22:22:00,216   adding 'skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace.tsv'
2026-06-01T22:22:00,217   adding 'skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq'
2026-06-01T22:22:00,218   adding 'skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq'
2026-06-01T22:22:00,219   adding 'skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq'
2026-06-01T22:22:00,221   adding 'skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq'
2026-06-01T22:22:00,222   adding 'skbio/io/format/tests/data/stockholm_all_data_types'
2026-06-01T22:22:00,223   adding 'skbio/io/format/tests/data/stockholm_blank_lines'
2026-06-01T22:22:00,224   adding 'skbio/io/format/tests/data/stockholm_data_only'
2026-06-01T22:22:00,225   adding 'skbio/io/format/tests/data/stockholm_different_padding'
2026-06-01T22:22:00,226   adding 'skbio/io/format/tests/data/stockholm_differing_gc_data_length'
2026-06-01T22:22:00,227   adding 'skbio/io/format/tests/data/stockholm_differing_gr_data_length'
2026-06-01T22:22:00,228   adding 'skbio/io/format/tests/data/stockholm_differing_seq_lengths'
2026-06-01T22:22:00,229   adding 'skbio/io/format/tests/data/stockholm_duplicate_gc'
2026-06-01T22:22:00,230   adding 'skbio/io/format/tests/data/stockholm_duplicate_gr'
2026-06-01T22:22:00,232   adding 'skbio/io/format/tests/data/stockholm_duplicate_sequence_names'
2026-06-01T22:22:00,233   adding 'skbio/io/format/tests/data/stockholm_duplicate_tree_ids'
2026-06-01T22:22:00,234   adding 'skbio/io/format/tests/data/stockholm_extensive'
2026-06-01T22:22:00,235   adding 'skbio/io/format/tests/data/stockholm_extensive_mixed'
2026-06-01T22:22:00,237   adding 'skbio/io/format/tests/data/stockholm_invalid_data_type'
2026-06-01T22:22:00,238   adding 'skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr'
2026-06-01T22:22:00,239   adding 'skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs'
2026-06-01T22:22:00,240   adding 'skbio/io/format/tests/data/stockholm_malformed_data_line'
2026-06-01T22:22:00,241   adding 'skbio/io/format/tests/data/stockholm_malformed_gc_line'
2026-06-01T22:22:00,242   adding 'skbio/io/format/tests/data/stockholm_malformed_gf_line'
2026-06-01T22:22:00,243   adding 'skbio/io/format/tests/data/stockholm_malformed_gr_line'
2026-06-01T22:22:00,244   adding 'skbio/io/format/tests/data/stockholm_malformed_gs_line'
2026-06-01T22:22:00,246   adding 'skbio/io/format/tests/data/stockholm_metadata_only'
2026-06-01T22:22:00,247   adding 'skbio/io/format/tests/data/stockholm_minimal'
2026-06-01T22:22:00,248   adding 'skbio/io/format/tests/data/stockholm_missing_footer'
2026-06-01T22:22:00,249   adding 'skbio/io/format/tests/data/stockholm_missing_header'
2026-06-01T22:22:00,250   adding 'skbio/io/format/tests/data/stockholm_missing_reference_items'
2026-06-01T22:22:00,251   adding 'skbio/io/format/tests/data/stockholm_missing_rn_tag'
2026-06-01T22:22:00,252   adding 'skbio/io/format/tests/data/stockholm_multi_line_tree_no_id'
2026-06-01T22:22:00,254   adding 'skbio/io/format/tests/data/stockholm_multi_line_tree_with_id'
2026-06-01T22:22:00,255   adding 'skbio/io/format/tests/data/stockholm_multiple_msa'
2026-06-01T22:22:00,256   adding 'skbio/io/format/tests/data/stockholm_multiple_multi_line_trees'
2026-06-01T22:22:00,257   adding 'skbio/io/format/tests/data/stockholm_multiple_references'
2026-06-01T22:22:00,258   adding 'skbio/io/format/tests/data/stockholm_multiple_trees'
2026-06-01T22:22:00,259   adding 'skbio/io/format/tests/data/stockholm_no_data'
2026-06-01T22:22:00,261   adding 'skbio/io/format/tests/data/stockholm_nonstring_labels'
2026-06-01T22:22:00,262   adding 'skbio/io/format/tests/data/stockholm_rna'
2026-06-01T22:22:00,263   adding 'skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace'
2026-06-01T22:22:00,264   adding 'skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace'
2026-06-01T22:22:00,265   adding 'skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace'
2026-06-01T22:22:00,266   adding 'skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace'
2026-06-01T22:22:00,268   adding 'skbio/io/format/tests/data/stockholm_runon_references'
2026-06-01T22:22:00,269   adding 'skbio/io/format/tests/data/stockholm_runon_references_mixed'
2026-06-01T22:22:00,270   adding 'skbio/io/format/tests/data/stockholm_single_reference'
2026-06-01T22:22:00,271   adding 'skbio/io/format/tests/data/stockholm_single_tree_with_id'
2026-06-01T22:22:00,272   adding 'skbio/io/format/tests/data/stockholm_single_tree_without_id'
2026-06-01T22:22:00,274   adding 'skbio/io/format/tests/data/stockholm_two_of_each_metadata'
2026-06-01T22:22:00,275   adding 'skbio/io/format/tests/data/stockholm_whitespace_only_lines'
2026-06-01T22:22:00,276   adding 'skbio/io/format/tests/data/taxdump_names.dmp'
2026-06-01T22:22:00,277   adding 'skbio/io/format/tests/data/taxdump_nodes.dmp'
2026-06-01T22:22:00,514   adding 'skbio/io/format/tests/data/tiny_embedding_file.npz'
2026-06-01T22:22:00,529   adding 'skbio/io/format/tests/data/tsv_10_fields'
2026-06-01T22:22:00,530   adding 'skbio/io/format/tests/data/tsv_8_fields'
2026-06-01T22:22:00,531   adding 'skbio/io/format/tests/data/whitespace_only'
2026-06-01T22:22:00,532   adding 'skbio/io/format/tests/data/wrapping_as_illumina.fastq'
2026-06-01T22:22:00,533   adding 'skbio/io/format/tests/data/wrapping_as_sanger.fastq'
2026-06-01T22:22:00,534   adding 'skbio/io/format/tests/data/wrapping_original_sanger.fastq'
2026-06-01T22:22:00,536   adding 'skbio/io/tests/__init__.py'
2026-06-01T22:22:00,539   adding 'skbio/io/tests/test_descriptors.py'
2026-06-01T22:22:00,540   adding 'skbio/io/tests/test_format_imports.py'
2026-06-01T22:22:00,542   adding 'skbio/io/tests/test_iosources.py'
2026-06-01T22:22:00,546   adding 'skbio/io/tests/test_registry.py'
2026-06-01T22:22:00,549   adding 'skbio/io/tests/test_util.py'
2026-06-01T22:22:00,550   adding 'skbio/io/tests/data/big5_file'
2026-06-01T22:22:00,552   adding 'skbio/io/tests/data/big5_file.bz2'
2026-06-01T22:22:00,553   adding 'skbio/io/tests/data/big5_file.gz'
2026-06-01T22:22:00,554   adding 'skbio/io/tests/data/example_file'
2026-06-01T22:22:00,555   adding 'skbio/io/tests/data/example_file.bz2'
2026-06-01T22:22:00,556   adding 'skbio/io/tests/data/example_file.gz'
2026-06-01T22:22:00,557   adding 'skbio/io/tests/data/real_file'
2026-06-01T22:22:00,558   adding 'skbio/io/tests/data/real_file_2'
2026-06-01T22:22:00,560   adding 'skbio/metadata/__init__.py'
2026-06-01T22:22:00,562   adding 'skbio/metadata/_enan.py'
2026-06-01T22:22:00,628   adding 'skbio/metadata/_intersection.c'
2026-06-01T22:22:00,792   adding 'skbio/metadata/_intersection.cpython-311-arm-linux-gnueabihf.so'
2026-06-01T22:22:00,799   adding 'skbio/metadata/_intersection.pyx'
2026-06-01T22:22:00,803   adding 'skbio/metadata/_interval.py'
2026-06-01T22:22:00,809   adding 'skbio/metadata/_metadata.py'
2026-06-01T22:22:00,812   adding 'skbio/metadata/_mixin.py'
2026-06-01T22:22:00,813   adding 'skbio/metadata/_repr.py'
2026-06-01T22:22:00,817   adding 'skbio/metadata/_testing.py'
2026-06-01T22:22:00,819   adding 'skbio/metadata/base.py'
2026-06-01T22:22:00,822   adding 'skbio/metadata/io.py'
2026-06-01T22:22:00,823   adding 'skbio/metadata/missing.py'
2026-06-01T22:22:00,825   adding 'skbio/metadata/tests/__init__.py'
2026-06-01T22:22:00,826   adding 'skbio/metadata/tests/test_enan.py'
2026-06-01T22:22:00,828   adding 'skbio/metadata/tests/test_intersection.py'
2026-06-01T22:22:00,831   adding 'skbio/metadata/tests/test_interval.py'
2026-06-01T22:22:00,835   adding 'skbio/metadata/tests/test_io.py'
2026-06-01T22:22:00,839   adding 'skbio/metadata/tests/test_metadata.py'
2026-06-01T22:22:00,842   adding 'skbio/metadata/tests/test_metadata_column.py'
2026-06-01T22:22:00,844   adding 'skbio/metadata/tests/test_missing.py'
2026-06-01T22:22:00,845   adding 'skbio/metadata/tests/test_mixin.py'
2026-06-01T22:22:00,848   adding 'skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv'
2026-06-01T22:22:00,849   adding 'skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv'
2026-06-01T22:22:00,850   adding 'skbio/metadata/tests/data/invalid/data-longer-than-header.tsv'
2026-06-01T22:22:00,852   adding 'skbio/metadata/tests/data/invalid/directive-after-directives-section.tsv'
2026-06-01T22:22:00,853   adding 'skbio/metadata/tests/data/invalid/directive-before-header.tsv'
2026-06-01T22:22:00,854   adding 'skbio/metadata/tests/data/invalid/directive-longer-than-header.tsv'
2026-06-01T22:22:00,855   adding 'skbio/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv'
2026-06-01T22:22:00,856   adding 'skbio/metadata/tests/data/invalid/duplicate-column-names.tsv'
2026-06-01T22:22:00,858   adding 'skbio/metadata/tests/data/invalid/duplicate-directives.tsv'
2026-06-01T22:22:00,859   adding 'skbio/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv'
2026-06-01T22:22:00,860   adding 'skbio/metadata/tests/data/invalid/duplicate-ids.tsv'
2026-06-01T22:22:00,861   adding 'skbio/metadata/tests/data/invalid/empty-column-name.tsv'
2026-06-01T22:22:00,862   adding 'skbio/metadata/tests/data/invalid/empty-file'
2026-06-01T22:22:00,863   adding 'skbio/metadata/tests/data/invalid/empty-id.tsv'
2026-06-01T22:22:00,864   adding 'skbio/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv'
2026-06-01T22:22:00,865   adding 'skbio/metadata/tests/data/invalid/header-only.tsv'
2026-06-01T22:22:00,866   adding 'skbio/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv'
2026-06-01T22:22:00,867   adding 'skbio/metadata/tests/data/invalid/invalid-header.tsv'
2026-06-01T22:22:00,869   adding 'skbio/metadata/tests/data/invalid/missing-unknown-scheme.tsv'
2026-06-01T22:22:00,870   adding 'skbio/metadata/tests/data/invalid/non-utf-8.tsv'
2026-06-01T22:22:00,871   adding 'skbio/metadata/tests/data/invalid/qiime1-empty.tsv'
2026-06-01T22:22:00,872   adding 'skbio/metadata/tests/data/invalid/simple-utf-16be.txt'
2026-06-01T22:22:00,873   adding 'skbio/metadata/tests/data/invalid/simple-utf-16le.txt'
2026-06-01T22:22:00,874   adding 'skbio/metadata/tests/data/invalid/types-directive-non-numeric.tsv'
2026-06-01T22:22:00,875   adding 'skbio/metadata/tests/data/invalid/unrecognized-column-type.tsv'
2026-06-01T22:22:00,877   adding 'skbio/metadata/tests/data/invalid/unrecognized-directive.tsv'
2026-06-01T22:22:00,878   adding 'skbio/metadata/tests/data/invalid/whitespace-only-column-name.tsv'
2026-06-01T22:22:00,879   adding 'skbio/metadata/tests/data/invalid/whitespace-only-id.tsv'
2026-06-01T22:22:00,881   adding 'skbio/metadata/tests/data/valid/BOM-simple.txt'
2026-06-01T22:22:00,882   adding 'skbio/metadata/tests/data/valid/all-cells-padded.tsv'
2026-06-01T22:22:00,883   adding 'skbio/metadata/tests/data/valid/biom-observation-metadata.tsv'
2026-06-01T22:22:00,885   adding 'skbio/metadata/tests/data/valid/case-insensitive-types-directive.tsv'
2026-06-01T22:22:00,886   adding 'skbio/metadata/tests/data/valid/column-order.tsv'
2026-06-01T22:22:00,887   adding 'skbio/metadata/tests/data/valid/comments.tsv'
2026-06-01T22:22:00,888   adding 'skbio/metadata/tests/data/valid/complete-types-directive.tsv'
2026-06-01T22:22:00,889   adding 'skbio/metadata/tests/data/valid/complete-types-directive_w_sk.tsv'
2026-06-01T22:22:00,890   adding 'skbio/metadata/tests/data/valid/empty-rows.tsv'
2026-06-01T22:22:00,892   adding 'skbio/metadata/tests/data/valid/empty-types-directive.tsv'
2026-06-01T22:22:00,893   adding 'skbio/metadata/tests/data/valid/jagged-trailing-columns.tsv'
2026-06-01T22:22:00,894   adding 'skbio/metadata/tests/data/valid/jagged.tsv'
2026-06-01T22:22:00,895   adding 'skbio/metadata/tests/data/valid/leading-trailing-whitespace.tsv'
2026-06-01T22:22:00,896   adding 'skbio/metadata/tests/data/valid/mac-line-endings.tsv'
2026-06-01T22:22:00,898   adding 'skbio/metadata/tests/data/valid/minimal.tsv'
2026-06-01T22:22:00,899   adding 'skbio/metadata/tests/data/valid/missing-data.tsv'
2026-06-01T22:22:00,900   adding 'skbio/metadata/tests/data/valid/missing-insdc-no-directive.tsv'
2026-06-01T22:22:00,901   adding 'skbio/metadata/tests/data/valid/missing-insdc.tsv'
2026-06-01T22:22:00,902   adding 'skbio/metadata/tests/data/valid/no-columns.tsv'
2026-06-01T22:22:00,903   adding 'skbio/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv'
2026-06-01T22:22:00,905   adding 'skbio/metadata/tests/data/valid/no-newline-at-eof.tsv'
2026-06-01T22:22:00,906   adding 'skbio/metadata/tests/data/valid/non-standard-characters.tsv'
2026-06-01T22:22:00,907   adding 'skbio/metadata/tests/data/valid/numeric-column.tsv'
2026-06-01T22:22:00,908   adding 'skbio/metadata/tests/data/valid/override-insdc.tsv'
2026-06-01T22:22:00,910   adding 'skbio/metadata/tests/data/valid/partial-types-directive.tsv'
2026-06-01T22:22:00,911   adding 'skbio/metadata/tests/data/valid/qiime1.tsv'
2026-06-01T22:22:00,912   adding 'skbio/metadata/tests/data/valid/qiita-preparation-information.tsv'
2026-06-01T22:22:00,913   adding 'skbio/metadata/tests/data/valid/qiita-sample-information.tsv'
2026-06-01T22:22:00,914   adding 'skbio/metadata/tests/data/valid/recommended-ids.tsv'
2026-06-01T22:22:00,915   adding 'skbio/metadata/tests/data/valid/rows-shorter-than-header.tsv'
2026-06-01T22:22:00,916   adding 'skbio/metadata/tests/data/valid/simple-with-directive.tsv'
2026-06-01T22:22:00,918   adding 'skbio/metadata/tests/data/valid/simple.tsv'
2026-06-01T22:22:00,919   adding 'skbio/metadata/tests/data/valid/simple.txt'
2026-06-01T22:22:00,920   adding 'skbio/metadata/tests/data/valid/single-column.tsv'
2026-06-01T22:22:00,921   adding 'skbio/metadata/tests/data/valid/single-id.tsv'
2026-06-01T22:22:00,922   adding 'skbio/metadata/tests/data/valid/trailing-columns.tsv'
2026-06-01T22:22:00,923   adding 'skbio/metadata/tests/data/valid/unix-line-endings.tsv'
2026-06-01T22:22:00,924   adding 'skbio/metadata/tests/data/valid/windows-line-endings.tsv'
2026-06-01T22:22:00,927   adding 'skbio/sequence/__init__.py'
2026-06-01T22:22:00,929   adding 'skbio/sequence/_alphabet.py'
2026-06-01T22:22:00,931   adding 'skbio/sequence/_dna.py'
2026-06-01T22:22:00,934   adding 'skbio/sequence/_genetic_code.py'
2026-06-01T22:22:00,938   adding 'skbio/sequence/_grammared_sequence.py'
2026-06-01T22:22:00,940   adding 'skbio/sequence/_nucleotide_mixin.py'
2026-06-01T22:22:00,942   adding 'skbio/sequence/_protein.py'
2026-06-01T22:22:00,943   adding 'skbio/sequence/_repr.py'
2026-06-01T22:22:00,945   adding 'skbio/sequence/_rna.py'
2026-06-01T22:22:00,954   adding 'skbio/sequence/_sequence.py'
2026-06-01T22:22:00,959   adding 'skbio/sequence/_substitution.py'
2026-06-01T22:22:00,966   adding 'skbio/sequence/distance.py'
2026-06-01T22:22:00,968   adding 'skbio/sequence/tests/__init__.py'
2026-06-01T22:22:00,970   adding 'skbio/sequence/tests/test_alphabet.py'
2026-06-01T22:22:00,974   adding 'skbio/sequence/tests/test_distance.py'
2026-06-01T22:22:00,975   adding 'skbio/sequence/tests/test_dna.py'
2026-06-01T22:22:00,977   adding 'skbio/sequence/tests/test_genetic_code.py'
2026-06-01T22:22:00,980   adding 'skbio/sequence/tests/test_grammared_sequence.py'
2026-06-01T22:22:00,982   adding 'skbio/sequence/tests/test_nucleotide_sequences.py'
2026-06-01T22:22:00,984   adding 'skbio/sequence/tests/test_protein.py'
2026-06-01T22:22:00,985   adding 'skbio/sequence/tests/test_rna.py'
2026-06-01T22:22:00,994   adding 'skbio/sequence/tests/test_sequence.py'
2026-06-01T22:22:00,997   adding 'skbio/sequence/tests/test_substitution.py'
2026-06-01T22:22:00,999   adding 'skbio/stats/__init__.py'
2026-06-01T22:22:01,000   adding 'skbio/stats/_misc.py'
2026-06-01T22:22:01,002   adding 'skbio/stats/_subsample.py'
2026-06-01T22:22:01,005   adding 'skbio/stats/gradient.py'
2026-06-01T22:22:01,011   adding 'skbio/stats/power.py'
2026-06-01T22:22:01,014   adding 'skbio/stats/composition/__init__.py'
2026-06-01T22:22:01,016   adding 'skbio/stats/composition/_ancom.py'
2026-06-01T22:22:01,022   adding 'skbio/stats/composition/_ancombc.py'
2026-06-01T22:22:01,028   adding 'skbio/stats/composition/_base.py'
2026-06-01T22:22:01,032   adding 'skbio/stats/composition/_dirmult.py'
2026-06-01T22:22:01,034   adding 'skbio/stats/composition/_utils.py'
2026-06-01T22:22:01,038   adding 'skbio/stats/composition/tests/test_ancom.py'
2026-06-01T22:22:01,040   adding 'skbio/stats/composition/tests/test_ancombc.py'
2026-06-01T22:22:01,045   adding 'skbio/stats/composition/tests/test_base.py'
2026-06-01T22:22:01,048   adding 'skbio/stats/composition/tests/test_dirmult.py'
2026-06-01T22:22:01,050   adding 'skbio/stats/composition/tests/test_utils.py'
2026-06-01T22:22:01,054   adding 'skbio/stats/composition/tests/data/pseq_feature_table_subset.csv.gz'
2026-06-01T22:22:01,055   adding 'skbio/stats/composition/tests/data/pseq_meta_data_subset.csv.gz'
2026-06-01T22:22:01,057   adding 'skbio/stats/composition/tests/data/pseq_subset_out_res_diff_abn.csv'
2026-06-01T22:22:01,059   adding 'skbio/stats/distance/__init__.py'
2026-06-01T22:22:01,061   adding 'skbio/stats/distance/_anosim.py'
2026-06-01T22:22:01,071   adding 'skbio/stats/distance/_base.py'
2026-06-01T22:22:01,073   adding 'skbio/stats/distance/_bioenv.py'
2026-06-01T22:22:01,207   adding 'skbio/stats/distance/_cutils.c'
2026-06-01T22:22:01,514   adding 'skbio/stats/distance/_cutils.cpython-311-arm-linux-gnueabihf.so'
2026-06-01T22:22:01,526   adding 'skbio/stats/distance/_cutils.pyx'
2026-06-01T22:22:01,529   adding 'skbio/stats/distance/_mantel.py'
2026-06-01T22:22:01,531   adding 'skbio/stats/distance/_permanova.py'
2026-06-01T22:22:01,533   adding 'skbio/stats/distance/_permdisp.py'
2026-06-01T22:22:01,535   adding 'skbio/stats/distance/_utils.py'
2026-06-01T22:22:01,536   adding 'skbio/stats/distance/tests/__init__.py'
2026-06-01T22:22:01,538   adding 'skbio/stats/distance/tests/test_anosim.py'
2026-06-01T22:22:01,545   adding 'skbio/stats/distance/tests/test_base.py'
2026-06-01T22:22:01,547   adding 'skbio/stats/distance/tests/test_bioenv.py'
2026-06-01T22:22:01,551   adding 'skbio/stats/distance/tests/test_mantel.py'
2026-06-01T22:22:01,553   adding 'skbio/stats/distance/tests/test_permanova.py'
2026-06-01T22:22:01,556   adding 'skbio/stats/distance/tests/test_permdisp.py'
2026-06-01T22:22:01,557   adding 'skbio/stats/distance/tests/test_util.py'
2026-06-01T22:22:01,559   adding 'skbio/stats/distance/tests/data/bioenv_df_vegan.txt'
2026-06-01T22:22:01,561   adding 'skbio/stats/distance/tests/data/bioenv_dm_vegan.txt'
2026-06-01T22:22:01,562   adding 'skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt'
2026-06-01T22:22:01,563   adding 'skbio/stats/distance/tests/data/df.txt'
2026-06-01T22:22:01,565   adding 'skbio/stats/distance/tests/data/df_extra_column.txt'
2026-06-01T22:22:01,566   adding 'skbio/stats/distance/tests/data/dm.txt'
2026-06-01T22:22:01,567   adding 'skbio/stats/distance/tests/data/dm2.txt'
2026-06-01T22:22:01,568   adding 'skbio/stats/distance/tests/data/dm3.txt'
2026-06-01T22:22:01,569   adding 'skbio/stats/distance/tests/data/dm4.txt'
2026-06-01T22:22:01,571   adding 'skbio/stats/distance/tests/data/dm_reordered.txt'
2026-06-01T22:22:01,572   adding 'skbio/stats/distance/tests/data/exp_results.txt'
2026-06-01T22:22:01,573   adding 'skbio/stats/distance/tests/data/exp_results_different_column_order.txt'
2026-06-01T22:22:01,574   adding 'skbio/stats/distance/tests/data/exp_results_single_column.txt'
2026-06-01T22:22:01,579   adding 'skbio/stats/distance/tests/data/frameSeries_dm.tsv'
2026-06-01T22:22:01,581   adding 'skbio/stats/distance/tests/data/frameSeries_grouping.tsv'
2026-06-01T22:22:01,582   adding 'skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt'
2026-06-01T22:22:01,584   adding 'skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt'
2026-06-01T22:22:01,587   adding 'skbio/stats/distance/tests/data/moving_pictures_dm.tsv'
2026-06-01T22:22:01,589   adding 'skbio/stats/distance/tests/data/moving_pictures_mf.tsv'
2026-06-01T22:22:01,590   adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt'
2026-06-01T22:22:01,591   adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt'
2026-06-01T22:22:01,592   adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt'
2026-06-01T22:22:01,593   adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt'
2026-06-01T22:22:01,595   adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt'
2026-06-01T22:22:01,596   adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt'
2026-06-01T22:22:01,597   adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt'
2026-06-01T22:22:01,599   adding 'skbio/stats/evolve/__init__.py'
2026-06-01T22:22:01,601   adding 'skbio/stats/evolve/_hommola.py'
2026-06-01T22:22:01,602   adding 'skbio/stats/evolve/tests/__init__.py'
2026-06-01T22:22:01,604   adding 'skbio/stats/evolve/tests/test_hommola.py'
2026-06-01T22:22:01,606   adding 'skbio/stats/ordination/__init__.py'
2026-06-01T22:22:01,608   adding 'skbio/stats/ordination/_canonical_correspondence_analysis.py'
2026-06-01T22:22:01,610   adding 'skbio/stats/ordination/_correspondence_analysis.py'
2026-06-01T22:22:01,708   adding 'skbio/stats/ordination/_cutils.c'
2026-06-01T22:22:01,945   adding 'skbio/stats/ordination/_cutils.cpython-311-arm-linux-gnueabihf.so'
2026-06-01T22:22:01,952   adding 'skbio/stats/ordination/_cutils.pyx'
2026-06-01T22:22:01,960   adding 'skbio/stats/ordination/_mmvec.py'
2026-06-01T22:22:01,963   adding 'skbio/stats/ordination/_ordination_results.py'
2026-06-01T22:22:01,965   adding 'skbio/stats/ordination/_principal_component_analysis.py'
2026-06-01T22:22:01,969   adding 'skbio/stats/ordination/_principal_coordinate_analysis.py'
2026-06-01T22:22:01,971   adding 'skbio/stats/ordination/_redundancy_analysis.py'
2026-06-01T22:22:01,973   adding 'skbio/stats/ordination/_utils.py'
2026-06-01T22:22:01,975   adding 'skbio/stats/ordination/tests/__init__.py'
2026-06-01T22:22:01,976   adding 'skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py'
2026-06-01T22:22:01,978   adding 'skbio/stats/ordination/tests/test_correspondence_analysis.py'
2026-06-01T22:22:01,982   adding 'skbio/stats/ordination/tests/test_mmvec.py'
2026-06-01T22:22:01,984   adding 'skbio/stats/ordination/tests/test_ordination_results.py'
2026-06-01T22:22:01,986   adding 'skbio/stats/ordination/tests/test_principal_component_analysis.py'
2026-06-01T22:22:01,989   adding 'skbio/stats/ordination/tests/test_principal_coordinate_analysis.py'
2026-06-01T22:22:01,990   adding 'skbio/stats/ordination/tests/test_redundancy_analysis.py'
2026-06-01T22:22:01,992   adding 'skbio/stats/ordination/tests/test_util.py'
2026-06-01T22:22:01,994   adding 'skbio/stats/ordination/tests/data/L&L_CA_data'
2026-06-01T22:22:01,995   adding 'skbio/stats/ordination/tests/data/PCoA_biplot_descriptors'
2026-06-01T22:22:01,996   adding 'skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors'
2026-06-01T22:22:01,998   adding 'skbio/stats/ordination/tests/data/PCoA_sample_data'
2026-06-01T22:22:01,999   adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_12dim'
2026-06-01T22:22:02,000   adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_2'
2026-06-01T22:22:02,001   adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3'
2026-06-01T22:22:02,003   adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim'
2026-06-01T22:22:02,004   adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim'
2026-06-01T22:22:02,005   adding 'skbio/stats/ordination/tests/data/PCoA_skbio'
2026-06-01T22:22:02,006   adding 'skbio/stats/ordination/tests/data/example2_X'
2026-06-01T22:22:02,007   adding 'skbio/stats/ordination/tests/data/example2_Y'
2026-06-01T22:22:02,009   adding 'skbio/stats/ordination/tests/data/example2_biplot_scaling1'
2026-06-01T22:22:02,010   adding 'skbio/stats/ordination/tests/data/example2_biplot_scaling2'
2026-06-01T22:22:02,011   adding 'skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1'
2026-06-01T22:22:02,013   adding 'skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2'
2026-06-01T22:22:02,014   adding 'skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan'
2026-06-01T22:22:02,015   adding 'skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan'
2026-06-01T22:22:02,016   adding 'skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan'
2026-06-01T22:22:02,018   adding 'skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan'
2026-06-01T22:22:02,019   adding 'skbio/stats/ordination/tests/data/example3_X'
2026-06-01T22:22:02,020   adding 'skbio/stats/ordination/tests/data/example3_Y'
2026-06-01T22:22:02,021   adding 'skbio/stats/ordination/tests/data/example3_biplot_scaling1'
2026-06-01T22:22:02,022   adding 'skbio/stats/ordination/tests/data/example3_biplot_scaling2'
2026-06-01T22:22:02,023   adding 'skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1'
2026-06-01T22:22:02,024   adding 'skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2'
2026-06-01T22:22:02,026   adding 'skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan'
2026-06-01T22:22:02,027   adding 'skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan'
2026-06-01T22:22:02,028   adding 'skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan'
2026-06-01T22:22:02,029   adding 'skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan'
2026-06-01T22:22:02,030   adding 'skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site'
2026-06-01T22:22:02,031   adding 'skbio/stats/ordination/tests/data/exp_PCoAzeros_site'
2026-06-01T22:22:02,033   adding 'skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv'
2026-06-01T22:22:02,034   adding 'skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv'
2026-06-01T22:22:02,035   adding 'skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv'
2026-06-01T22:22:02,036   adding 'skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv'
2026-06-01T22:22:02,038   adding 'skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv'
2026-06-01T22:22:02,039   adding 'skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv'
2026-06-01T22:22:02,041   adding 'skbio/stats/ordination/tests/data/varechem.csv'
2026-06-01T22:22:02,042   adding 'skbio/stats/ordination/tests/data/varespec.csv'
2026-06-01T22:22:02,044   adding 'skbio/stats/ordination/tests/data/cf/README.md'
2026-06-01T22:22:02,045   adding 'skbio/stats/ordination/tests/data/cf/metabolite_meta.tsv.sha256'
2026-06-01T22:22:02,046   adding 'skbio/stats/ordination/tests/data/cf/metabolites.tsv.sha256'
2026-06-01T22:22:02,048   adding 'skbio/stats/ordination/tests/data/cf/microbe_meta.tsv.sha256'
2026-06-01T22:22:02,049   adding 'skbio/stats/ordination/tests/data/cf/microbes.tsv.sha256'
2026-06-01T22:22:02,050   adding 'skbio/stats/ordination/tests/data/soils/README.md'
2026-06-01T22:22:02,053   adding 'skbio/stats/ordination/tests/data/soils/metabolites.tsv'
2026-06-01T22:22:02,054   adding 'skbio/stats/ordination/tests/data/soils/metabolites.tsv.sha256'
2026-06-01T22:22:02,062   adding 'skbio/stats/ordination/tests/data/soils/microbes.tsv'
2026-06-01T22:22:02,063   adding 'skbio/stats/ordination/tests/data/soils/microbes.tsv.sha256'
2026-06-01T22:22:02,065   adding 'skbio/stats/tests/__init__.py'
2026-06-01T22:22:02,068   adding 'skbio/stats/tests/test_gradient.py'
2026-06-01T22:22:02,070   adding 'skbio/stats/tests/test_misc.py'
2026-06-01T22:22:02,072   adding 'skbio/stats/tests/test_power.py'
2026-06-01T22:22:02,074   adding 'skbio/stats/tests/test_subsample.py'
2026-06-01T22:22:02,076   adding 'skbio/stats/tests/data/cr_data_out'
2026-06-01T22:22:02,077   adding 'skbio/stats/tests/data/cr_data_raw'
2026-06-01T22:22:02,078   adding 'skbio/stats/tests/data/cr_no_data_out'
2026-06-01T22:22:02,079   adding 'skbio/stats/tests/data/cr_no_data_raw'
2026-06-01T22:22:02,080   adding 'skbio/stats/tests/data/gr_w_msg_out'
2026-06-01T22:22:02,082   adding 'skbio/stats/tests/data/gr_w_msg_raw'
2026-06-01T22:22:02,083   adding 'skbio/stats/tests/data/gr_wo_msg_out'
2026-06-01T22:22:02,084   adding 'skbio/stats/tests/data/gr_wo_msg_raw'
2026-06-01T22:22:02,085   adding 'skbio/stats/tests/data/vr_out'
2026-06-01T22:22:02,086   adding 'skbio/stats/tests/data/vr_raw'
2026-06-01T22:22:02,088   adding 'skbio/stats/tests/data/vr_real_out'
2026-06-01T22:22:02,089   adding 'skbio/stats/tests/data/vr_real_raw'
2026-06-01T22:22:02,091   adding 'skbio/table/__init__.py'
2026-06-01T22:22:02,095   adding 'skbio/table/_augment.py'
2026-06-01T22:22:02,097   adding 'skbio/table/_base.py'
2026-06-01T22:22:02,099   adding 'skbio/table/_tabular.py'
2026-06-01T22:22:02,100   adding 'skbio/table/tests/__init__.py'
2026-06-01T22:22:02,104   adding 'skbio/table/tests/test_augment.py'
2026-06-01T22:22:02,106   adding 'skbio/table/tests/test_base.py'
2026-06-01T22:22:02,107   adding 'skbio/table/tests/test_tabular.py'
2026-06-01T22:22:02,109   adding 'skbio/tests/__init__.py'
2026-06-01T22:22:02,110   adding 'skbio/tests/test_base.py'
2026-06-01T22:22:02,111   adding 'skbio/tests/test_config.py'
2026-06-01T22:22:02,113   adding 'skbio/tests/test_workflow.py'
2026-06-01T22:22:02,117   adding 'skbio/tree/__init__.py'
2026-06-01T22:22:02,331   adding 'skbio/tree/_c_me.c'
2026-06-01T22:22:02,772   adding 'skbio/tree/_c_me.cpython-311-arm-linux-gnueabihf.so'
2026-06-01T22:22:02,799   adding 'skbio/tree/_c_me.pyx'
2026-06-01T22:22:02,888   adding 'skbio/tree/_c_nj.c'
2026-06-01T22:22:03,091   adding 'skbio/tree/_c_nj.cpython-311-arm-linux-gnueabihf.so'
2026-06-01T22:22:03,098   adding 'skbio/tree/_c_nj.pyx'
2026-06-01T22:22:03,100   adding 'skbio/tree/_compare.py'
2026-06-01T22:22:03,102   adding 'skbio/tree/_exception.py'
2026-06-01T22:22:03,104   adding 'skbio/tree/_majority_rule.py'
2026-06-01T22:22:03,112   adding 'skbio/tree/_me.py'
2026-06-01T22:22:03,114   adding 'skbio/tree/_nj.py'
2026-06-01T22:22:03,138   adding 'skbio/tree/_tree.py'
2026-06-01T22:22:03,141   adding 'skbio/tree/_upgma.py'
2026-06-01T22:22:03,142   adding 'skbio/tree/_utils.py'
2026-06-01T22:22:03,144   adding 'skbio/tree/tests/__init__.py'
2026-06-01T22:22:03,145   adding 'skbio/tree/tests/test_compare.py'
2026-06-01T22:22:03,147   adding 'skbio/tree/tests/test_majority_rule.py'
2026-06-01T22:22:03,155   adding 'skbio/tree/tests/test_me.py'
2026-06-01T22:22:03,157   adding 'skbio/tree/tests/test_nj.py'
2026-06-01T22:22:03,168   adding 'skbio/tree/tests/test_tree.py'
2026-06-01T22:22:03,170   adding 'skbio/tree/tests/test_upgma.py'
2026-06-01T22:22:03,171   adding 'skbio/tree/tests/test_utils.py'
2026-06-01T22:22:03,173   adding 'skbio/tree/tests/data/mp100.bme.nni.nwk'
2026-06-01T22:22:03,175   adding 'skbio/tree/tests/data/mp100.bme.nwk'
2026-06-01T22:22:03,176   adding 'skbio/tree/tests/data/mp100.gme.nni.nwk'
2026-06-01T22:22:03,178   adding 'skbio/tree/tests/data/mp100.gme.nwk'
2026-06-01T22:22:03,179   adding 'skbio/tree/tests/data/mp100.nj.nwk'
2026-06-01T22:22:03,186   adding 'skbio/tree/tests/data/mp100.phy'
2026-06-01T22:22:03,188   adding 'skbio/tree/tests/data/mp100.upgma.nwk'
2026-06-01T22:22:03,190   adding 'skbio/util/__init__.py'
2026-06-01T22:22:03,191   adding 'skbio/util/_array.py'
2026-06-01T22:22:03,193   adding 'skbio/util/_decorator.py'
2026-06-01T22:22:03,195   adding 'skbio/util/_docstring.py'
2026-06-01T22:22:03,196   adding 'skbio/util/_exception.py'
2026-06-01T22:22:03,198   adding 'skbio/util/_gpu.py'
2026-06-01T22:22:03,199   adding 'skbio/util/_misc.py'
2026-06-01T22:22:03,200   adding 'skbio/util/_optionals.py'
2026-06-01T22:22:03,202   adding 'skbio/util/_plotting.py'
2026-06-01T22:22:03,203   adding 'skbio/util/_random.py'
2026-06-01T22:22:03,207   adding 'skbio/util/_testing.py'
2026-06-01T22:22:03,208   adding 'skbio/util/_typing.py'
2026-06-01T22:22:03,210   adding 'skbio/util/_warning.py'
2026-06-01T22:22:03,212   adding 'skbio/util/tests/__init__.py'
2026-06-01T22:22:03,214   adding 'skbio/util/tests/test_array.py'
2026-06-01T22:22:03,215   adding 'skbio/util/tests/test_decorator.py'
2026-06-01T22:22:03,217   adding 'skbio/util/tests/test_docstring.py'
2026-06-01T22:22:03,219   adding 'skbio/util/tests/test_misc.py'
2026-06-01T22:22:03,220   adding 'skbio/util/tests/test_optionals.py'
2026-06-01T22:22:03,222   adding 'skbio/util/tests/test_plotting.py'
2026-06-01T22:22:03,223   adding 'skbio/util/tests/test_random.py'
2026-06-01T22:22:03,226   adding 'skbio/util/tests/test_testing.py'
2026-06-01T22:22:03,228   adding 'skbio/util/tests/test_warning.py'
2026-06-01T22:22:03,230   adding 'scikit_bio-0.7.3.dist-info/METADATA'
2026-06-01T22:22:03,231   adding 'scikit_bio-0.7.3.dist-info/WHEEL'
2026-06-01T22:22:03,232   adding 'scikit_bio-0.7.3.dist-info/top_level.txt'
2026-06-01T22:22:03,246   adding 'scikit_bio-0.7.3.dist-info/RECORD'
2026-06-01T22:22:03,351   removing build/bdist.linux-armv7l/wheel
2026-06-01T22:22:04,686   Building wheel for scikit-bio (pyproject.toml): finished with status 'done'
2026-06-01T22:22:04,890   Created wheel for scikit-bio: filename=scikit_bio-0.7.3-cp311-cp311-linux_armv7l.whl size=9214123 sha256=d9e441f5c0a674a34a5453bdc67a1e0da1f2f28c09f7083aecd5a35c4dc4c7c4
2026-06-01T22:22:04,891   Stored in directory: /tmp/pip-ephem-wheel-cache-sxr2dl_w/wheels/eb/03/01/35e7592942ccceafc747c9138d9fc093ce2e9a3c64483c2ec6
2026-06-01T22:22:04,932 Successfully built scikit-bio
2026-06-01T22:22:05,167 Removed build tracker: '/tmp/pip-build-tracker-3cr9_gx7'