2026-06-02T11:46:55,375 Created temporary directory: /tmp/pip-ephem-wheel-cache-5ygf5gbe 2026-06-02T11:46:55,377 Created temporary directory: /tmp/pip-build-tracker-3cvi63v9 2026-06-02T11:46:55,377 Initialized build tracking at /tmp/pip-build-tracker-3cvi63v9 2026-06-02T11:46:55,378 Created build tracker: /tmp/pip-build-tracker-3cvi63v9 2026-06-02T11:46:55,378 Entered build tracker: /tmp/pip-build-tracker-3cvi63v9 2026-06-02T11:46:55,379 Created temporary directory: /tmp/pip-wheel-x7lj5bhu 2026-06-02T11:46:55,382 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-02T11:46:55,384 Created temporary directory: /tmp/pip-ephem-wheel-cache-ct6gzngx 2026-06-02T11:46:55,406 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-02T11:46:55,410 2 location(s) to search for versions of pilotpy: 2026-06-02T11:46:55,410 * https://pypi.org/simple/pilotpy/ 2026-06-02T11:46:55,410 * https://www.piwheels.org/simple/pilotpy/ 2026-06-02T11:46:55,410 Fetching project page and analyzing links: https://pypi.org/simple/pilotpy/ 2026-06-02T11:46:55,411 Getting page https://pypi.org/simple/pilotpy/ 2026-06-02T11:46:55,413 Found index url https://pypi.org/simple 2026-06-02T11:46:55,645 Fetched page https://pypi.org/simple/pilotpy/ as application/vnd.pypi.simple.v1+json 2026-06-02T11:46:55,649 Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/53/cb/57c2d519de7d8e39d820dacda879e3a5b714806fb5581e8c85292b772d2d/pilotpy-2.0.6-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5) 2026-06-02T11:46:55,650 Link requires a different Python (3.11.2 not in: '==3.11.5'): https://files.pythonhosted.org/packages/5e/0f/893bb22d31be44eda89acb10da271efd3c2d38544d95c0dcdd1f49b85a1d/pilotpy-2.0.6.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5) 2026-06-02T11:46:55,650 Skipping link: 2.0.6 Requires-Python ==3.11.5: https://files.pythonhosted.org/packages/5e/0f/893bb22d31be44eda89acb10da271efd3c2d38544d95c0dcdd1f49b85a1d/pilotpy-2.0.6.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5) 2026-06-02T11:46:55,651 Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/2d/b4/b280fe57ece1b9f1cca5b9fb0659f32731a635836d98a1440341b9a023ef/pilotpy-2.0.7-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3) 2026-06-02T11:46:55,652 Link requires a different Python (3.11.2 not in: '>=3.14.3'): https://files.pythonhosted.org/packages/fa/c6/dd74b1167029a41d39ef526bc519b080d88a8fb43b7f416456173550e764/pilotpy-2.0.7.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3) 2026-06-02T11:46:55,652 Skipping link: 2.0.7 Requires-Python >=3.14.3: https://files.pythonhosted.org/packages/fa/c6/dd74b1167029a41d39ef526bc519b080d88a8fb43b7f416456173550e764/pilotpy-2.0.7.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3) 2026-06-02T11:46:55,653 Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/86/71/f5552dbb8a0e33ca2a3668633cb8ea654f482610ba45d09df64592735f68/pilotpy-2.0.8-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9) 2026-06-02T11:46:55,654 Found link https://files.pythonhosted.org/packages/56/cc/0bb5e066c6004e969d4859dd464f2ea975504b1a9553e0877a8cef79de0c/pilotpy-2.0.8.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.8 2026-06-02T11:46:55,655 Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/81/f2/de1bfbee3779551615ed61bcd87594b50dfa3610dccfa207a2ce672fb9b0/pilotpy-2.0.9-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9) 2026-06-02T11:46:55,656 Found link https://files.pythonhosted.org/packages/d9/c9/8c2322259049024ba09e4e01bbd7b5a80bb7efe86e1fd21c0df7eaf87e9f/pilotpy-2.0.9.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.9 2026-06-02T11:46:55,656 Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/b5/6c/99f5ce11138b00dd8c8cfa659ef821bb54f6dfbb079921a65112ee7cbc95/pilotpy-2.0.10-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9) 2026-06-02T11:46:55,657 Found link https://files.pythonhosted.org/packages/99/6a/4edc94de4a41df153aad1c31c1d1f9b3336126c23ee4725003db48ff14ae/pilotpy-2.0.10.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.10 2026-06-02T11:46:55,658 Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/42/e3/61428ca49bca2986ba9bfe177778be64fedd9a21f8d90fabb70d61ee21a9/pilotpy-2.0.11-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9) 2026-06-02T11:46:55,659 Found link https://files.pythonhosted.org/packages/72/15/68c6654214420409f1ef45a86b89412f7d4250e680fbebea2523f7b02a41/pilotpy-2.0.11.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.11 2026-06-02T11:46:55,659 Fetching project page and analyzing links: https://www.piwheels.org/simple/pilotpy/ 2026-06-02T11:46:55,660 Getting page https://www.piwheels.org/simple/pilotpy/ 2026-06-02T11:46:55,661 Found index url https://www.piwheels.org/simple 2026-06-02T11:46:55,838 Fetched page https://www.piwheels.org/simple/pilotpy/ as text/html 2026-06-02T11:46:55,840 Skipping link: No binaries permitted for pilotpy: https://archive1.piwheels.org/simple/pilotpy/pilotpy-2.0.9-py3-none-any.whl#sha256=dbe5605eaaaf655b9c25fc0b1567e4dfe98f76cb65f16a0b9fc0027164dfe39c (from https://www.piwheels.org/simple/pilotpy/) (requires-python:>=3.9) 2026-06-02T11:46:55,841 Skipping link: No binaries permitted for pilotpy: https://archive1.piwheels.org/simple/pilotpy/pilotpy-2.0.8-py3-none-any.whl#sha256=b6401ab4d888e85593008a2ab52cede509be8d14869c8c311a0253f024da6c72 (from https://www.piwheels.org/simple/pilotpy/) (requires-python:>=3.9) 2026-06-02T11:46:55,842 Skipping link: not a file: https://www.piwheels.org/simple/pilotpy/ 2026-06-02T11:46:55,842 Skipping link: not a file: https://pypi.org/simple/pilotpy/ 2026-06-02T11:46:55,861 Given no hashes to check 1 links for project 'pilotpy': discarding no candidates 2026-06-02T11:46:55,879 Collecting pilotpy==2.0.10 2026-06-02T11:46:55,881 Created temporary directory: /tmp/pip-unpack-91hf3ebp 2026-06-02T11:46:56,035 Downloading pilotpy-2.0.10.tar.gz (72 kB) 2026-06-02T11:46:56,169 Added pilotpy==2.0.10 from https://files.pythonhosted.org/packages/99/6a/4edc94de4a41df153aad1c31c1d1f9b3336126c23ee4725003db48ff14ae/pilotpy-2.0.10.tar.gz to build tracker '/tmp/pip-build-tracker-3cvi63v9' 2026-06-02T11:46:56,171 Running setup.py (path:/tmp/pip-wheel-x7lj5bhu/pilotpy_cd7a3818355240259e806177ca679b0b/setup.py) egg_info for package pilotpy 2026-06-02T11:46:56,172 Created temporary directory: /tmp/pip-pip-egg-info-7hy7e1kh 2026-06-02T11:46:56,172 Preparing metadata (setup.py): started 2026-06-02T11:46:56,173 Running command python setup.py egg_info 2026-06-02T11:46:57,107 running egg_info 2026-06-02T11:46:57,134 creating /tmp/pip-pip-egg-info-7hy7e1kh/pilotpy.egg-info 2026-06-02T11:46:57,136 writing /tmp/pip-pip-egg-info-7hy7e1kh/pilotpy.egg-info/PKG-INFO 2026-06-02T11:46:57,139 writing dependency_links to /tmp/pip-pip-egg-info-7hy7e1kh/pilotpy.egg-info/dependency_links.txt 2026-06-02T11:46:57,141 writing requirements to /tmp/pip-pip-egg-info-7hy7e1kh/pilotpy.egg-info/requires.txt 2026-06-02T11:46:57,143 writing top-level names to /tmp/pip-pip-egg-info-7hy7e1kh/pilotpy.egg-info/top_level.txt 2026-06-02T11:46:57,144 writing manifest file '/tmp/pip-pip-egg-info-7hy7e1kh/pilotpy.egg-info/SOURCES.txt' 2026-06-02T11:46:57,235 reading manifest file '/tmp/pip-pip-egg-info-7hy7e1kh/pilotpy.egg-info/SOURCES.txt' 2026-06-02T11:46:57,237 adding license file 'LICENSE' 2026-06-02T11:46:57,240 writing manifest file '/tmp/pip-pip-egg-info-7hy7e1kh/pilotpy.egg-info/SOURCES.txt' 2026-06-02T11:46:57,349 Preparing metadata (setup.py): finished with status 'done' 2026-06-02T11:46:57,354 Source in /tmp/pip-wheel-x7lj5bhu/pilotpy_cd7a3818355240259e806177ca679b0b has version 2.0.10, which satisfies requirement pilotpy==2.0.10 from https://files.pythonhosted.org/packages/99/6a/4edc94de4a41df153aad1c31c1d1f9b3336126c23ee4725003db48ff14ae/pilotpy-2.0.10.tar.gz 2026-06-02T11:46:57,355 Removed pilotpy==2.0.10 from https://files.pythonhosted.org/packages/99/6a/4edc94de4a41df153aad1c31c1d1f9b3336126c23ee4725003db48ff14ae/pilotpy-2.0.10.tar.gz from build tracker '/tmp/pip-build-tracker-3cvi63v9' 2026-06-02T11:46:57,361 Created temporary directory: /tmp/pip-unpack-51032gea 2026-06-02T11:46:57,362 Building wheels for collected packages: pilotpy 2026-06-02T11:46:57,366 Created temporary directory: /tmp/pip-wheel-a4ku53rk 2026-06-02T11:46:57,367 Building wheel for pilotpy (setup.py): started 2026-06-02T11:46:57,368 Destination directory: /tmp/pip-wheel-a4ku53rk 2026-06-02T11:46:57,369 Running command python setup.py bdist_wheel 2026-06-02T11:46:58,210 running bdist_wheel 2026-06-02T11:46:58,341 running build 2026-06-02T11:46:58,342 running build_py 2026-06-02T11:46:58,373 creating build/lib/pilotpy 2026-06-02T11:46:58,376 copying pilotpy/tl.py -> build/lib/pilotpy 2026-06-02T11:46:58,379 copying pilotpy/pl.py -> build/lib/pilotpy 2026-06-02T11:46:58,381 copying pilotpy/__init__.py -> build/lib/pilotpy 2026-06-02T11:46:58,384 creating build/lib/pilotpy/plot 2026-06-02T11:46:58,386 copying pilotpy/plot/ploting.py -> build/lib/pilotpy/plot 2026-06-02T11:46:58,390 copying pilotpy/plot/gene_selection_analysis.py -> build/lib/pilotpy/plot 2026-06-02T11:46:58,393 copying pilotpy/plot/__init__.py -> build/lib/pilotpy/plot 2026-06-02T11:46:58,396 copying pilotpy/plot/curve_activity.py -> build/lib/pilotpy/plot 2026-06-02T11:46:58,398 copying pilotpy/plot/pseudobulk_DE_analysis.py -> build/lib/pilotpy/plot 2026-06-02T11:46:58,401 creating build/lib/pilotpy/tools 2026-06-02T11:46:58,403 copying pilotpy/tools/patients_sub_clustering.py -> build/lib/pilotpy/tools 2026-06-02T11:46:58,406 copying pilotpy/tools/Cell_gene_selection.py -> build/lib/pilotpy/tools 2026-06-02T11:46:58,409 copying pilotpy/tools/Gene_cluster_specific.py -> build/lib/pilotpy/tools 2026-06-02T11:46:58,412 copying pilotpy/tools/Gene_cluster_specific_functions.py -> build/lib/pilotpy/tools 2026-06-02T11:46:58,415 copying pilotpy/tools/__init__.py -> build/lib/pilotpy/tools 2026-06-02T11:46:58,417 copying pilotpy/tools/Trajectory.py -> build/lib/pilotpy/tools 2026-06-02T11:46:58,452 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-06-02T11:46:58,453 !! 2026-06-02T11:46:58,454 ******************************************************************************** 2026-06-02T11:46:58,455 Please avoid running ``setup.py`` directly. 2026-06-02T11:46:58,455 Instead, use pypa/build, pypa/installer or other 2026-06-02T11:46:58,456 standards-based tools. 2026-06-02T11:46:58,457 This deprecation is overdue, please update your project and remove deprecated 2026-06-02T11:46:58,458 calls to avoid build errors in the future. 2026-06-02T11:46:58,459 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-06-02T11:46:58,460 ******************************************************************************** 2026-06-02T11:46:58,461 !! 2026-06-02T11:46:58,461 self.initialize_options() 2026-06-02T11:46:58,485 installing to build/bdist.linux-armv7l/wheel 2026-06-02T11:46:58,486 running install 2026-06-02T11:46:58,509 running install_lib 2026-06-02T11:46:58,538 creating build/bdist.linux-armv7l/wheel 2026-06-02T11:46:58,540 creating build/bdist.linux-armv7l/wheel/pilotpy 2026-06-02T11:46:58,542 copying build/lib/pilotpy/tl.py -> build/bdist.linux-armv7l/wheel/./pilotpy 2026-06-02T11:46:58,545 creating build/bdist.linux-armv7l/wheel/pilotpy/plot 2026-06-02T11:46:58,546 copying build/lib/pilotpy/plot/ploting.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot 2026-06-02T11:46:58,550 copying build/lib/pilotpy/plot/gene_selection_analysis.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot 2026-06-02T11:46:58,554 copying build/lib/pilotpy/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot 2026-06-02T11:46:58,556 copying build/lib/pilotpy/plot/curve_activity.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot 2026-06-02T11:46:58,558 copying build/lib/pilotpy/plot/pseudobulk_DE_analysis.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot 2026-06-02T11:46:58,561 copying build/lib/pilotpy/pl.py -> build/bdist.linux-armv7l/wheel/./pilotpy 2026-06-02T11:46:58,564 copying build/lib/pilotpy/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy 2026-06-02T11:46:58,567 creating build/bdist.linux-armv7l/wheel/pilotpy/tools 2026-06-02T11:46:58,568 copying build/lib/pilotpy/tools/patients_sub_clustering.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools 2026-06-02T11:46:58,571 copying build/lib/pilotpy/tools/Cell_gene_selection.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools 2026-06-02T11:46:58,574 copying build/lib/pilotpy/tools/Gene_cluster_specific.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools 2026-06-02T11:46:58,577 copying build/lib/pilotpy/tools/Gene_cluster_specific_functions.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools 2026-06-02T11:46:58,580 copying build/lib/pilotpy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools 2026-06-02T11:46:58,582 copying build/lib/pilotpy/tools/Trajectory.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools 2026-06-02T11:46:58,586 running install_egg_info 2026-06-02T11:46:58,620 running egg_info 2026-06-02T11:46:58,647 writing pilotpy.egg-info/PKG-INFO 2026-06-02T11:46:58,651 writing dependency_links to pilotpy.egg-info/dependency_links.txt 2026-06-02T11:46:58,653 writing requirements to pilotpy.egg-info/requires.txt 2026-06-02T11:46:58,655 writing top-level names to pilotpy.egg-info/top_level.txt 2026-06-02T11:46:58,687 reading manifest file 'pilotpy.egg-info/SOURCES.txt' 2026-06-02T11:46:58,690 adding license file 'LICENSE' 2026-06-02T11:46:58,694 writing manifest file 'pilotpy.egg-info/SOURCES.txt' 2026-06-02T11:46:58,695 Copying pilotpy.egg-info to build/bdist.linux-armv7l/wheel/./pilotpy-2.0.10-py3.11.egg-info 2026-06-02T11:46:58,705 running install_scripts 2026-06-02T11:46:58,716 creating build/bdist.linux-armv7l/wheel/pilotpy-2.0.10.dist-info/WHEEL 2026-06-02T11:46:58,719 creating '/tmp/pip-wheel-a4ku53rk/pilotpy-2.0.10-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-02T11:46:58,722 adding 'pilotpy/__init__.py' 2026-06-02T11:46:58,723 adding 'pilotpy/pl.py' 2026-06-02T11:46:58,724 adding 'pilotpy/tl.py' 2026-06-02T11:46:58,726 adding 'pilotpy/plot/__init__.py' 2026-06-02T11:46:58,727 adding 'pilotpy/plot/curve_activity.py' 2026-06-02T11:46:58,732 adding 'pilotpy/plot/gene_selection_analysis.py' 2026-06-02T11:46:58,743 adding 'pilotpy/plot/ploting.py' 2026-06-02T11:46:58,746 adding 'pilotpy/plot/pseudobulk_DE_analysis.py' 2026-06-02T11:46:58,750 adding 'pilotpy/tools/Cell_gene_selection.py' 2026-06-02T11:46:58,752 adding 'pilotpy/tools/Gene_cluster_specific.py' 2026-06-02T11:46:58,756 adding 'pilotpy/tools/Gene_cluster_specific_functions.py' 2026-06-02T11:46:58,763 adding 'pilotpy/tools/Trajectory.py' 2026-06-02T11:46:58,764 adding 'pilotpy/tools/__init__.py' 2026-06-02T11:46:58,766 adding 'pilotpy/tools/patients_sub_clustering.py' 2026-06-02T11:46:58,769 adding 'pilotpy-2.0.10.dist-info/licenses/LICENSE' 2026-06-02T11:46:58,770 adding 'pilotpy-2.0.10.dist-info/METADATA' 2026-06-02T11:46:58,771 adding 'pilotpy-2.0.10.dist-info/WHEEL' 2026-06-02T11:46:58,772 adding 'pilotpy-2.0.10.dist-info/top_level.txt' 2026-06-02T11:46:58,773 adding 'pilotpy-2.0.10.dist-info/RECORD' 2026-06-02T11:46:58,775 removing build/bdist.linux-armv7l/wheel 2026-06-02T11:46:58,894 Building wheel for pilotpy (setup.py): finished with status 'done' 2026-06-02T11:46:58,897 Created wheel for pilotpy: filename=pilotpy-2.0.10-py3-none-any.whl size=75557 sha256=70188672be25a778ad08c72ea5f9add9fb131da14d43c337485ab02cd719a5b9 2026-06-02T11:46:58,898 Stored in directory: /tmp/pip-ephem-wheel-cache-ct6gzngx/wheels/6a/0a/99/381f672915466fabf08a860d7a29fa305ae87e64e6f689f29a 2026-06-02T11:46:58,909 Successfully built pilotpy 2026-06-02T11:46:58,914 Removed build tracker: '/tmp/pip-build-tracker-3cvi63v9'