2026-06-02T12:07:12,516 Created temporary directory: /tmp/pip-ephem-wheel-cache-_diut6vf
2026-06-02T12:07:12,518 Created temporary directory: /tmp/pip-build-tracker-wrpgnzgu
2026-06-02T12:07:12,519 Initialized build tracking at /tmp/pip-build-tracker-wrpgnzgu
2026-06-02T12:07:12,519 Created build tracker: /tmp/pip-build-tracker-wrpgnzgu
2026-06-02T12:07:12,520 Entered build tracker: /tmp/pip-build-tracker-wrpgnzgu
2026-06-02T12:07:12,521 Created temporary directory: /tmp/pip-wheel-4w6j5h7s
2026-06-02T12:07:12,523 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-02T12:07:12,526 Created temporary directory: /tmp/pip-ephem-wheel-cache-ayhlfo50
2026-06-02T12:07:12,548 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-02T12:07:12,552 2 location(s) to search for versions of pilotpy:
2026-06-02T12:07:12,552 * https://pypi.org/simple/pilotpy/
2026-06-02T12:07:12,552 * https://www.piwheels.org/simple/pilotpy/
2026-06-02T12:07:12,552 Fetching project page and analyzing links: https://pypi.org/simple/pilotpy/
2026-06-02T12:07:12,553 Getting page https://pypi.org/simple/pilotpy/
2026-06-02T12:07:12,555 Found index url https://pypi.org/simple
2026-06-02T12:07:12,782 Fetched page https://pypi.org/simple/pilotpy/ as application/vnd.pypi.simple.v1+json
2026-06-02T12:07:12,785   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/53/cb/57c2d519de7d8e39d820dacda879e3a5b714806fb5581e8c85292b772d2d/pilotpy-2.0.6-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-06-02T12:07:12,786   Link requires a different Python (3.11.2 not in: '==3.11.5'): https://files.pythonhosted.org/packages/5e/0f/893bb22d31be44eda89acb10da271efd3c2d38544d95c0dcdd1f49b85a1d/pilotpy-2.0.6.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-06-02T12:07:12,787   Skipping link: 2.0.6 Requires-Python ==3.11.5: https://files.pythonhosted.org/packages/5e/0f/893bb22d31be44eda89acb10da271efd3c2d38544d95c0dcdd1f49b85a1d/pilotpy-2.0.6.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-06-02T12:07:12,788   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/2d/b4/b280fe57ece1b9f1cca5b9fb0659f32731a635836d98a1440341b9a023ef/pilotpy-2.0.7-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-06-02T12:07:12,789   Link requires a different Python (3.11.2 not in: '>=3.14.3'): https://files.pythonhosted.org/packages/fa/c6/dd74b1167029a41d39ef526bc519b080d88a8fb43b7f416456173550e764/pilotpy-2.0.7.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-06-02T12:07:12,789   Skipping link: 2.0.7 Requires-Python >=3.14.3: https://files.pythonhosted.org/packages/fa/c6/dd74b1167029a41d39ef526bc519b080d88a8fb43b7f416456173550e764/pilotpy-2.0.7.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-06-02T12:07:12,790   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/86/71/f5552dbb8a0e33ca2a3668633cb8ea654f482610ba45d09df64592735f68/pilotpy-2.0.8-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T12:07:12,791   Found link https://files.pythonhosted.org/packages/56/cc/0bb5e066c6004e969d4859dd464f2ea975504b1a9553e0877a8cef79de0c/pilotpy-2.0.8.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.8
2026-06-02T12:07:12,792   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/81/f2/de1bfbee3779551615ed61bcd87594b50dfa3610dccfa207a2ce672fb9b0/pilotpy-2.0.9-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T12:07:12,793   Found link https://files.pythonhosted.org/packages/d9/c9/8c2322259049024ba09e4e01bbd7b5a80bb7efe86e1fd21c0df7eaf87e9f/pilotpy-2.0.9.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.9
2026-06-02T12:07:12,794   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/b5/6c/99f5ce11138b00dd8c8cfa659ef821bb54f6dfbb079921a65112ee7cbc95/pilotpy-2.0.10-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T12:07:12,794   Found link https://files.pythonhosted.org/packages/99/6a/4edc94de4a41df153aad1c31c1d1f9b3336126c23ee4725003db48ff14ae/pilotpy-2.0.10.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.10
2026-06-02T12:07:12,795   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/42/e3/61428ca49bca2986ba9bfe177778be64fedd9a21f8d90fabb70d61ee21a9/pilotpy-2.0.11-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T12:07:12,796   Found link https://files.pythonhosted.org/packages/72/15/68c6654214420409f1ef45a86b89412f7d4250e680fbebea2523f7b02a41/pilotpy-2.0.11.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.11
2026-06-02T12:07:12,796   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/80/09/3091bb15cdf5b42fe20e114152a5af577e6edd8caca8a643ea0d5296e6f4/pilotpy-2.0.12-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T12:07:12,797   Found link https://files.pythonhosted.org/packages/e0/24/3b226e54c4c0ed471bd150b16f0eafec3c13e68e0c0421253c95ff08b8c2/pilotpy-2.0.12.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.12
2026-06-02T12:07:12,798 Fetching project page and analyzing links: https://www.piwheels.org/simple/pilotpy/
2026-06-02T12:07:12,799 Getting page https://www.piwheels.org/simple/pilotpy/
2026-06-02T12:07:12,800 Found index url https://www.piwheels.org/simple
2026-06-02T12:07:12,976 Fetched page https://www.piwheels.org/simple/pilotpy/ as text/html
2026-06-02T12:07:12,978   Skipping link: No binaries permitted for pilotpy: https://www.piwheels.org/simple/pilotpy/pilotpy-2.0.10-py3-none-any.whl#sha256=70188672be25a778ad08c72ea5f9add9fb131da14d43c337485ab02cd719a5b9 (from https://www.piwheels.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T12:07:12,979   Skipping link: No binaries permitted for pilotpy: https://archive1.piwheels.org/simple/pilotpy/pilotpy-2.0.9-py3-none-any.whl#sha256=dbe5605eaaaf655b9c25fc0b1567e4dfe98f76cb65f16a0b9fc0027164dfe39c (from https://www.piwheels.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T12:07:12,979   Skipping link: No binaries permitted for pilotpy: https://archive1.piwheels.org/simple/pilotpy/pilotpy-2.0.8-py3-none-any.whl#sha256=b6401ab4d888e85593008a2ab52cede509be8d14869c8c311a0253f024da6c72 (from https://www.piwheels.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T12:07:12,980 Skipping link: not a file: https://www.piwheels.org/simple/pilotpy/
2026-06-02T12:07:12,981 Skipping link: not a file: https://pypi.org/simple/pilotpy/
2026-06-02T12:07:13,000 Given no hashes to check 1 links for project 'pilotpy': discarding no candidates
2026-06-02T12:07:13,018 Collecting pilotpy==2.0.11
2026-06-02T12:07:13,021   Created temporary directory: /tmp/pip-unpack-g7sokrzb
2026-06-02T12:07:13,244   Downloading pilotpy-2.0.11.tar.gz (72 kB)
2026-06-02T12:07:13,362   Added pilotpy==2.0.11 from https://files.pythonhosted.org/packages/72/15/68c6654214420409f1ef45a86b89412f7d4250e680fbebea2523f7b02a41/pilotpy-2.0.11.tar.gz to build tracker '/tmp/pip-build-tracker-wrpgnzgu'
2026-06-02T12:07:13,364   Running setup.py (path:/tmp/pip-wheel-4w6j5h7s/pilotpy_232ce1f274704fca85e3c23e7bbf90b7/setup.py) egg_info for package pilotpy
2026-06-02T12:07:13,365   Created temporary directory: /tmp/pip-pip-egg-info-i6iy6o_8
2026-06-02T12:07:13,365   Preparing metadata (setup.py): started
2026-06-02T12:07:13,367   Running command python setup.py egg_info
2026-06-02T12:07:14,274   running egg_info
2026-06-02T12:07:14,301   creating /tmp/pip-pip-egg-info-i6iy6o_8/pilotpy.egg-info
2026-06-02T12:07:14,302   writing /tmp/pip-pip-egg-info-i6iy6o_8/pilotpy.egg-info/PKG-INFO
2026-06-02T12:07:14,306   writing dependency_links to /tmp/pip-pip-egg-info-i6iy6o_8/pilotpy.egg-info/dependency_links.txt
2026-06-02T12:07:14,308   writing requirements to /tmp/pip-pip-egg-info-i6iy6o_8/pilotpy.egg-info/requires.txt
2026-06-02T12:07:14,309   writing top-level names to /tmp/pip-pip-egg-info-i6iy6o_8/pilotpy.egg-info/top_level.txt
2026-06-02T12:07:14,310   writing manifest file '/tmp/pip-pip-egg-info-i6iy6o_8/pilotpy.egg-info/SOURCES.txt'
2026-06-02T12:07:14,404   reading manifest file '/tmp/pip-pip-egg-info-i6iy6o_8/pilotpy.egg-info/SOURCES.txt'
2026-06-02T12:07:14,406   adding license file 'LICENSE'
2026-06-02T12:07:14,408   writing manifest file '/tmp/pip-pip-egg-info-i6iy6o_8/pilotpy.egg-info/SOURCES.txt'
2026-06-02T12:07:14,519   Preparing metadata (setup.py): finished with status 'done'
2026-06-02T12:07:14,523   Source in /tmp/pip-wheel-4w6j5h7s/pilotpy_232ce1f274704fca85e3c23e7bbf90b7 has version 2.0.11, which satisfies requirement pilotpy==2.0.11 from https://files.pythonhosted.org/packages/72/15/68c6654214420409f1ef45a86b89412f7d4250e680fbebea2523f7b02a41/pilotpy-2.0.11.tar.gz
2026-06-02T12:07:14,524   Removed pilotpy==2.0.11 from https://files.pythonhosted.org/packages/72/15/68c6654214420409f1ef45a86b89412f7d4250e680fbebea2523f7b02a41/pilotpy-2.0.11.tar.gz from build tracker '/tmp/pip-build-tracker-wrpgnzgu'
2026-06-02T12:07:14,531 Created temporary directory: /tmp/pip-unpack-xu44uvpf
2026-06-02T12:07:14,531 Building wheels for collected packages: pilotpy
2026-06-02T12:07:14,536   Created temporary directory: /tmp/pip-wheel-6cubg05t
2026-06-02T12:07:14,537   Building wheel for pilotpy (setup.py): started
2026-06-02T12:07:14,538   Destination directory: /tmp/pip-wheel-6cubg05t
2026-06-02T12:07:14,539   Running command python setup.py bdist_wheel
2026-06-02T12:07:15,381   running bdist_wheel
2026-06-02T12:07:15,515   running build
2026-06-02T12:07:15,515   running build_py
2026-06-02T12:07:15,545   creating build/lib/pilotpy
2026-06-02T12:07:15,547   copying pilotpy/pl.py -> build/lib/pilotpy
2026-06-02T12:07:15,549   copying pilotpy/tl.py -> build/lib/pilotpy
2026-06-02T12:07:15,551   copying pilotpy/__init__.py -> build/lib/pilotpy
2026-06-02T12:07:15,554   creating build/lib/pilotpy/tools
2026-06-02T12:07:15,555   copying pilotpy/tools/Cell_gene_selection.py -> build/lib/pilotpy/tools
2026-06-02T12:07:15,557   copying pilotpy/tools/Gene_cluster_specific_functions.py -> build/lib/pilotpy/tools
2026-06-02T12:07:15,560   copying pilotpy/tools/Trajectory.py -> build/lib/pilotpy/tools
2026-06-02T12:07:15,563   copying pilotpy/tools/patients_sub_clustering.py -> build/lib/pilotpy/tools
2026-06-02T12:07:15,565   copying pilotpy/tools/Gene_cluster_specific.py -> build/lib/pilotpy/tools
2026-06-02T12:07:15,568   copying pilotpy/tools/__init__.py -> build/lib/pilotpy/tools
2026-06-02T12:07:15,570   creating build/lib/pilotpy/plot
2026-06-02T12:07:15,571   copying pilotpy/plot/pseudobulk_DE_analysis.py -> build/lib/pilotpy/plot
2026-06-02T12:07:15,574   copying pilotpy/plot/curve_activity.py -> build/lib/pilotpy/plot
2026-06-02T12:07:15,575   copying pilotpy/plot/gene_selection_analysis.py -> build/lib/pilotpy/plot
2026-06-02T12:07:15,579   copying pilotpy/plot/ploting.py -> build/lib/pilotpy/plot
2026-06-02T12:07:15,582   copying pilotpy/plot/__init__.py -> build/lib/pilotpy/plot
2026-06-02T12:07:15,615   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-06-02T12:07:15,616   !!

2026-06-02T12:07:15,617           ********************************************************************************
2026-06-02T12:07:15,618           Please avoid running ``setup.py`` directly.
2026-06-02T12:07:15,619           Instead, use pypa/build, pypa/installer or other
2026-06-02T12:07:15,619           standards-based tools.

2026-06-02T12:07:15,621           This deprecation is overdue, please update your project and remove deprecated
2026-06-02T12:07:15,621           calls to avoid build errors in the future.

2026-06-02T12:07:15,622           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-06-02T12:07:15,622           ********************************************************************************

2026-06-02T12:07:15,623   !!
2026-06-02T12:07:15,624     self.initialize_options()
2026-06-02T12:07:15,645   installing to build/bdist.linux-armv7l/wheel
2026-06-02T12:07:15,646   running install
2026-06-02T12:07:15,670   running install_lib
2026-06-02T12:07:15,698   creating build/bdist.linux-armv7l/wheel
2026-06-02T12:07:15,700   creating build/bdist.linux-armv7l/wheel/pilotpy
2026-06-02T12:07:15,702   creating build/bdist.linux-armv7l/wheel/pilotpy/tools
2026-06-02T12:07:15,703   copying build/lib/pilotpy/tools/Cell_gene_selection.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T12:07:15,706   copying build/lib/pilotpy/tools/Gene_cluster_specific_functions.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T12:07:15,708   copying build/lib/pilotpy/tools/Trajectory.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T12:07:15,712   copying build/lib/pilotpy/tools/patients_sub_clustering.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T12:07:15,715   copying build/lib/pilotpy/tools/Gene_cluster_specific.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T12:07:15,717   copying build/lib/pilotpy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T12:07:15,719   copying build/lib/pilotpy/pl.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-06-02T12:07:15,721   creating build/bdist.linux-armv7l/wheel/pilotpy/plot
2026-06-02T12:07:15,722   copying build/lib/pilotpy/plot/pseudobulk_DE_analysis.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-06-02T12:07:15,725   copying build/lib/pilotpy/plot/curve_activity.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-06-02T12:07:15,727   copying build/lib/pilotpy/plot/gene_selection_analysis.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-06-02T12:07:15,731   copying build/lib/pilotpy/plot/ploting.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-06-02T12:07:15,735   copying build/lib/pilotpy/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-06-02T12:07:15,737   copying build/lib/pilotpy/tl.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-06-02T12:07:15,739   copying build/lib/pilotpy/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-06-02T12:07:15,741   running install_egg_info
2026-06-02T12:07:15,776   running egg_info
2026-06-02T12:07:15,803   writing pilotpy.egg-info/PKG-INFO
2026-06-02T12:07:15,807   writing dependency_links to pilotpy.egg-info/dependency_links.txt
2026-06-02T12:07:15,809   writing requirements to pilotpy.egg-info/requires.txt
2026-06-02T12:07:15,810   writing top-level names to pilotpy.egg-info/top_level.txt
2026-06-02T12:07:15,841   reading manifest file 'pilotpy.egg-info/SOURCES.txt'
2026-06-02T12:07:15,844   adding license file 'LICENSE'
2026-06-02T12:07:15,848   writing manifest file 'pilotpy.egg-info/SOURCES.txt'
2026-06-02T12:07:15,849   Copying pilotpy.egg-info to build/bdist.linux-armv7l/wheel/./pilotpy-2.0.11-py3.11.egg-info
2026-06-02T12:07:15,858   running install_scripts
2026-06-02T12:07:15,869   creating build/bdist.linux-armv7l/wheel/pilotpy-2.0.11.dist-info/WHEEL
2026-06-02T12:07:15,871   creating '/tmp/pip-wheel-6cubg05t/pilotpy-2.0.11-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-02T12:07:15,874   adding 'pilotpy/__init__.py'
2026-06-02T12:07:15,875   adding 'pilotpy/pl.py'
2026-06-02T12:07:15,876   adding 'pilotpy/tl.py'
2026-06-02T12:07:15,878   adding 'pilotpy/plot/__init__.py'
2026-06-02T12:07:15,879   adding 'pilotpy/plot/curve_activity.py'
2026-06-02T12:07:15,884   adding 'pilotpy/plot/gene_selection_analysis.py'
2026-06-02T12:07:15,895   adding 'pilotpy/plot/ploting.py'
2026-06-02T12:07:15,899   adding 'pilotpy/plot/pseudobulk_DE_analysis.py'
2026-06-02T12:07:15,903   adding 'pilotpy/tools/Cell_gene_selection.py'
2026-06-02T12:07:15,905   adding 'pilotpy/tools/Gene_cluster_specific.py'
2026-06-02T12:07:15,908   adding 'pilotpy/tools/Gene_cluster_specific_functions.py'
2026-06-02T12:07:15,916   adding 'pilotpy/tools/Trajectory.py'
2026-06-02T12:07:15,917   adding 'pilotpy/tools/__init__.py'
2026-06-02T12:07:15,919   adding 'pilotpy/tools/patients_sub_clustering.py'
2026-06-02T12:07:15,922   adding 'pilotpy-2.0.11.dist-info/licenses/LICENSE'
2026-06-02T12:07:15,923   adding 'pilotpy-2.0.11.dist-info/METADATA'
2026-06-02T12:07:15,924   adding 'pilotpy-2.0.11.dist-info/WHEEL'
2026-06-02T12:07:15,925   adding 'pilotpy-2.0.11.dist-info/top_level.txt'
2026-06-02T12:07:15,926   adding 'pilotpy-2.0.11.dist-info/RECORD'
2026-06-02T12:07:15,928   removing build/bdist.linux-armv7l/wheel
2026-06-02T12:07:16,045   Building wheel for pilotpy (setup.py): finished with status 'done'
2026-06-02T12:07:16,048   Created wheel for pilotpy: filename=pilotpy-2.0.11-py3-none-any.whl size=75556 sha256=57330644c518b5ca4338e9ac9f4537614a52ce81e44926720e9134ae4f93a4d6
2026-06-02T12:07:16,049   Stored in directory: /tmp/pip-ephem-wheel-cache-ayhlfo50/wheels/34/46/d7/055f7e8ff6e1c355238f84605f4efbc1a46f731007fdc7a864
2026-06-02T12:07:16,060 Successfully built pilotpy
2026-06-02T12:07:16,065 Removed build tracker: '/tmp/pip-build-tracker-wrpgnzgu'