2026-06-02T13:16:10,767 Created temporary directory: /tmp/pip-ephem-wheel-cache-099rm0sy
2026-06-02T13:16:10,769 Created temporary directory: /tmp/pip-build-tracker-droqjda2
2026-06-02T13:16:10,769 Initialized build tracking at /tmp/pip-build-tracker-droqjda2
2026-06-02T13:16:10,770 Created build tracker: /tmp/pip-build-tracker-droqjda2
2026-06-02T13:16:10,770 Entered build tracker: /tmp/pip-build-tracker-droqjda2
2026-06-02T13:16:10,771 Created temporary directory: /tmp/pip-wheel-eg96mfb5
2026-06-02T13:16:10,774 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-02T13:16:10,776 Created temporary directory: /tmp/pip-ephem-wheel-cache-htkgpvdg
2026-06-02T13:16:10,798 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-02T13:16:10,802 2 location(s) to search for versions of pilotpy:
2026-06-02T13:16:10,802 * https://pypi.org/simple/pilotpy/
2026-06-02T13:16:10,802 * https://www.piwheels.org/simple/pilotpy/
2026-06-02T13:16:10,802 Fetching project page and analyzing links: https://pypi.org/simple/pilotpy/
2026-06-02T13:16:10,803 Getting page https://pypi.org/simple/pilotpy/
2026-06-02T13:16:10,805 Found index url https://pypi.org/simple
2026-06-02T13:16:10,957 Fetched page https://pypi.org/simple/pilotpy/ as application/vnd.pypi.simple.v1+json
2026-06-02T13:16:10,961   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/53/cb/57c2d519de7d8e39d820dacda879e3a5b714806fb5581e8c85292b772d2d/pilotpy-2.0.6-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-06-02T13:16:10,962   Link requires a different Python (3.11.2 not in: '==3.11.5'): https://files.pythonhosted.org/packages/5e/0f/893bb22d31be44eda89acb10da271efd3c2d38544d95c0dcdd1f49b85a1d/pilotpy-2.0.6.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-06-02T13:16:10,962   Skipping link: 2.0.6 Requires-Python ==3.11.5: https://files.pythonhosted.org/packages/5e/0f/893bb22d31be44eda89acb10da271efd3c2d38544d95c0dcdd1f49b85a1d/pilotpy-2.0.6.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-06-02T13:16:10,963   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/2d/b4/b280fe57ece1b9f1cca5b9fb0659f32731a635836d98a1440341b9a023ef/pilotpy-2.0.7-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-06-02T13:16:10,964   Link requires a different Python (3.11.2 not in: '>=3.14.3'): https://files.pythonhosted.org/packages/fa/c6/dd74b1167029a41d39ef526bc519b080d88a8fb43b7f416456173550e764/pilotpy-2.0.7.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-06-02T13:16:10,965   Skipping link: 2.0.7 Requires-Python >=3.14.3: https://files.pythonhosted.org/packages/fa/c6/dd74b1167029a41d39ef526bc519b080d88a8fb43b7f416456173550e764/pilotpy-2.0.7.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-06-02T13:16:10,965   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/86/71/f5552dbb8a0e33ca2a3668633cb8ea654f482610ba45d09df64592735f68/pilotpy-2.0.8-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T13:16:10,966   Found link https://files.pythonhosted.org/packages/56/cc/0bb5e066c6004e969d4859dd464f2ea975504b1a9553e0877a8cef79de0c/pilotpy-2.0.8.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.8
2026-06-02T13:16:10,967   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/81/f2/de1bfbee3779551615ed61bcd87594b50dfa3610dccfa207a2ce672fb9b0/pilotpy-2.0.9-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T13:16:10,968   Found link https://files.pythonhosted.org/packages/d9/c9/8c2322259049024ba09e4e01bbd7b5a80bb7efe86e1fd21c0df7eaf87e9f/pilotpy-2.0.9.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.9
2026-06-02T13:16:10,969   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/b5/6c/99f5ce11138b00dd8c8cfa659ef821bb54f6dfbb079921a65112ee7cbc95/pilotpy-2.0.10-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T13:16:10,970   Found link https://files.pythonhosted.org/packages/99/6a/4edc94de4a41df153aad1c31c1d1f9b3336126c23ee4725003db48ff14ae/pilotpy-2.0.10.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.10
2026-06-02T13:16:10,971   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/42/e3/61428ca49bca2986ba9bfe177778be64fedd9a21f8d90fabb70d61ee21a9/pilotpy-2.0.11-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T13:16:10,971   Found link https://files.pythonhosted.org/packages/72/15/68c6654214420409f1ef45a86b89412f7d4250e680fbebea2523f7b02a41/pilotpy-2.0.11.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.11
2026-06-02T13:16:10,972   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/80/09/3091bb15cdf5b42fe20e114152a5af577e6edd8caca8a643ea0d5296e6f4/pilotpy-2.0.12-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T13:16:10,973   Found link https://files.pythonhosted.org/packages/e0/24/3b226e54c4c0ed471bd150b16f0eafec3c13e68e0c0421253c95ff08b8c2/pilotpy-2.0.12.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.12
2026-06-02T13:16:10,974 Fetching project page and analyzing links: https://www.piwheels.org/simple/pilotpy/
2026-06-02T13:16:10,974 Getting page https://www.piwheels.org/simple/pilotpy/
2026-06-02T13:16:10,976 Found index url https://www.piwheels.org/simple
2026-06-02T13:16:11,144 Fetched page https://www.piwheels.org/simple/pilotpy/ as text/html
2026-06-02T13:16:11,147   Skipping link: No binaries permitted for pilotpy: https://www.piwheels.org/simple/pilotpy/pilotpy-2.0.11-py3-none-any.whl#sha256=57330644c518b5ca4338e9ac9f4537614a52ce81e44926720e9134ae4f93a4d6 (from https://www.piwheels.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T13:16:11,147   Skipping link: No binaries permitted for pilotpy: https://www.piwheels.org/simple/pilotpy/pilotpy-2.0.10-py3-none-any.whl#sha256=70188672be25a778ad08c72ea5f9add9fb131da14d43c337485ab02cd719a5b9 (from https://www.piwheels.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T13:16:11,148   Skipping link: No binaries permitted for pilotpy: https://archive1.piwheels.org/simple/pilotpy/pilotpy-2.0.9-py3-none-any.whl#sha256=dbe5605eaaaf655b9c25fc0b1567e4dfe98f76cb65f16a0b9fc0027164dfe39c (from https://www.piwheels.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T13:16:11,149   Skipping link: No binaries permitted for pilotpy: https://archive1.piwheels.org/simple/pilotpy/pilotpy-2.0.8-py3-none-any.whl#sha256=b6401ab4d888e85593008a2ab52cede509be8d14869c8c311a0253f024da6c72 (from https://www.piwheels.org/simple/pilotpy/) (requires-python:>=3.9)
2026-06-02T13:16:11,149 Skipping link: not a file: https://www.piwheels.org/simple/pilotpy/
2026-06-02T13:16:11,150 Skipping link: not a file: https://pypi.org/simple/pilotpy/
2026-06-02T13:16:11,169 Given no hashes to check 1 links for project 'pilotpy': discarding no candidates
2026-06-02T13:16:11,187 Collecting pilotpy==2.0.12
2026-06-02T13:16:11,189   Created temporary directory: /tmp/pip-unpack-793qo8b4
2026-06-02T13:16:11,420   Downloading pilotpy-2.0.12.tar.gz (72 kB)
2026-06-02T13:16:11,550   Added pilotpy==2.0.12 from https://files.pythonhosted.org/packages/e0/24/3b226e54c4c0ed471bd150b16f0eafec3c13e68e0c0421253c95ff08b8c2/pilotpy-2.0.12.tar.gz to build tracker '/tmp/pip-build-tracker-droqjda2'
2026-06-02T13:16:11,551   Running setup.py (path:/tmp/pip-wheel-eg96mfb5/pilotpy_3dbeff932cc541519797db460c4ef8ba/setup.py) egg_info for package pilotpy
2026-06-02T13:16:11,553   Created temporary directory: /tmp/pip-pip-egg-info-73l4nqbh
2026-06-02T13:16:11,553   Preparing metadata (setup.py): started
2026-06-02T13:16:11,554   Running command python setup.py egg_info
2026-06-02T13:16:12,454   running egg_info
2026-06-02T13:16:12,482   creating /tmp/pip-pip-egg-info-73l4nqbh/pilotpy.egg-info
2026-06-02T13:16:12,483   writing /tmp/pip-pip-egg-info-73l4nqbh/pilotpy.egg-info/PKG-INFO
2026-06-02T13:16:12,487   writing dependency_links to /tmp/pip-pip-egg-info-73l4nqbh/pilotpy.egg-info/dependency_links.txt
2026-06-02T13:16:12,489   writing requirements to /tmp/pip-pip-egg-info-73l4nqbh/pilotpy.egg-info/requires.txt
2026-06-02T13:16:12,490   writing top-level names to /tmp/pip-pip-egg-info-73l4nqbh/pilotpy.egg-info/top_level.txt
2026-06-02T13:16:12,492   writing manifest file '/tmp/pip-pip-egg-info-73l4nqbh/pilotpy.egg-info/SOURCES.txt'
2026-06-02T13:16:12,582   reading manifest file '/tmp/pip-pip-egg-info-73l4nqbh/pilotpy.egg-info/SOURCES.txt'
2026-06-02T13:16:12,584   adding license file 'LICENSE'
2026-06-02T13:16:12,587   writing manifest file '/tmp/pip-pip-egg-info-73l4nqbh/pilotpy.egg-info/SOURCES.txt'
2026-06-02T13:16:12,695   Preparing metadata (setup.py): finished with status 'done'
2026-06-02T13:16:12,700   Source in /tmp/pip-wheel-eg96mfb5/pilotpy_3dbeff932cc541519797db460c4ef8ba has version 2.0.12, which satisfies requirement pilotpy==2.0.12 from https://files.pythonhosted.org/packages/e0/24/3b226e54c4c0ed471bd150b16f0eafec3c13e68e0c0421253c95ff08b8c2/pilotpy-2.0.12.tar.gz
2026-06-02T13:16:12,701   Removed pilotpy==2.0.12 from https://files.pythonhosted.org/packages/e0/24/3b226e54c4c0ed471bd150b16f0eafec3c13e68e0c0421253c95ff08b8c2/pilotpy-2.0.12.tar.gz from build tracker '/tmp/pip-build-tracker-droqjda2'
2026-06-02T13:16:12,707 Created temporary directory: /tmp/pip-unpack-mljrf6e1
2026-06-02T13:16:12,708 Building wheels for collected packages: pilotpy
2026-06-02T13:16:12,712   Created temporary directory: /tmp/pip-wheel-um6y93cn
2026-06-02T13:16:12,713   Building wheel for pilotpy (setup.py): started
2026-06-02T13:16:12,714   Destination directory: /tmp/pip-wheel-um6y93cn
2026-06-02T13:16:12,715   Running command python setup.py bdist_wheel
2026-06-02T13:16:13,554   running bdist_wheel
2026-06-02T13:16:13,685   running build
2026-06-02T13:16:13,685   running build_py
2026-06-02T13:16:13,715   creating build/lib/pilotpy
2026-06-02T13:16:13,718   copying pilotpy/tl.py -> build/lib/pilotpy
2026-06-02T13:16:13,720   copying pilotpy/pl.py -> build/lib/pilotpy
2026-06-02T13:16:13,722   copying pilotpy/__init__.py -> build/lib/pilotpy
2026-06-02T13:16:13,724   creating build/lib/pilotpy/plot
2026-06-02T13:16:13,726   copying pilotpy/plot/ploting.py -> build/lib/pilotpy/plot
2026-06-02T13:16:13,729   copying pilotpy/plot/gene_selection_analysis.py -> build/lib/pilotpy/plot
2026-06-02T13:16:13,733   copying pilotpy/plot/__init__.py -> build/lib/pilotpy/plot
2026-06-02T13:16:13,735   copying pilotpy/plot/curve_activity.py -> build/lib/pilotpy/plot
2026-06-02T13:16:13,737   copying pilotpy/plot/pseudobulk_DE_analysis.py -> build/lib/pilotpy/plot
2026-06-02T13:16:13,740   creating build/lib/pilotpy/tools
2026-06-02T13:16:13,741   copying pilotpy/tools/patients_sub_clustering.py -> build/lib/pilotpy/tools
2026-06-02T13:16:13,744   copying pilotpy/tools/Cell_gene_selection.py -> build/lib/pilotpy/tools
2026-06-02T13:16:13,747   copying pilotpy/tools/Gene_cluster_specific.py -> build/lib/pilotpy/tools
2026-06-02T13:16:13,749   copying pilotpy/tools/Gene_cluster_specific_functions.py -> build/lib/pilotpy/tools
2026-06-02T13:16:13,752   copying pilotpy/tools/__init__.py -> build/lib/pilotpy/tools
2026-06-02T13:16:13,754   copying pilotpy/tools/Trajectory.py -> build/lib/pilotpy/tools
2026-06-02T13:16:13,789   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-06-02T13:16:13,790   !!

2026-06-02T13:16:13,791           ********************************************************************************
2026-06-02T13:16:13,792           Please avoid running ``setup.py`` directly.
2026-06-02T13:16:13,792           Instead, use pypa/build, pypa/installer or other
2026-06-02T13:16:13,793           standards-based tools.

2026-06-02T13:16:13,793           This deprecation is overdue, please update your project and remove deprecated
2026-06-02T13:16:13,794           calls to avoid build errors in the future.

2026-06-02T13:16:13,795           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-06-02T13:16:13,795           ********************************************************************************

2026-06-02T13:16:13,796   !!
2026-06-02T13:16:13,797     self.initialize_options()
2026-06-02T13:16:13,819   installing to build/bdist.linux-armv7l/wheel
2026-06-02T13:16:13,820   running install
2026-06-02T13:16:13,843   running install_lib
2026-06-02T13:16:13,871   creating build/bdist.linux-armv7l/wheel
2026-06-02T13:16:13,873   creating build/bdist.linux-armv7l/wheel/pilotpy
2026-06-02T13:16:13,874   copying build/lib/pilotpy/tl.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-06-02T13:16:13,877   creating build/bdist.linux-armv7l/wheel/pilotpy/plot
2026-06-02T13:16:13,878   copying build/lib/pilotpy/plot/ploting.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-06-02T13:16:13,882   copying build/lib/pilotpy/plot/gene_selection_analysis.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-06-02T13:16:13,885   copying build/lib/pilotpy/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-06-02T13:16:13,887   copying build/lib/pilotpy/plot/curve_activity.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-06-02T13:16:13,889   copying build/lib/pilotpy/plot/pseudobulk_DE_analysis.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-06-02T13:16:13,892   copying build/lib/pilotpy/pl.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-06-02T13:16:13,893   copying build/lib/pilotpy/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-06-02T13:16:13,896   creating build/bdist.linux-armv7l/wheel/pilotpy/tools
2026-06-02T13:16:13,897   copying build/lib/pilotpy/tools/patients_sub_clustering.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T13:16:13,900   copying build/lib/pilotpy/tools/Cell_gene_selection.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T13:16:13,902   copying build/lib/pilotpy/tools/Gene_cluster_specific.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T13:16:13,905   copying build/lib/pilotpy/tools/Gene_cluster_specific_functions.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T13:16:13,907   copying build/lib/pilotpy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T13:16:13,909   copying build/lib/pilotpy/tools/Trajectory.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-06-02T13:16:13,913   running install_egg_info
2026-06-02T13:16:13,947   running egg_info
2026-06-02T13:16:13,974   writing pilotpy.egg-info/PKG-INFO
2026-06-02T13:16:13,978   writing dependency_links to pilotpy.egg-info/dependency_links.txt
2026-06-02T13:16:13,980   writing requirements to pilotpy.egg-info/requires.txt
2026-06-02T13:16:13,981   writing top-level names to pilotpy.egg-info/top_level.txt
2026-06-02T13:16:14,015   reading manifest file 'pilotpy.egg-info/SOURCES.txt'
2026-06-02T13:16:14,018   adding license file 'LICENSE'
2026-06-02T13:16:14,021   writing manifest file 'pilotpy.egg-info/SOURCES.txt'
2026-06-02T13:16:14,022   Copying pilotpy.egg-info to build/bdist.linux-armv7l/wheel/./pilotpy-2.0.12-py3.11.egg-info
2026-06-02T13:16:14,033   running install_scripts
2026-06-02T13:16:14,046   creating build/bdist.linux-armv7l/wheel/pilotpy-2.0.12.dist-info/WHEEL
2026-06-02T13:16:14,049   creating '/tmp/pip-wheel-um6y93cn/pilotpy-2.0.12-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-02T13:16:14,051   adding 'pilotpy/__init__.py'
2026-06-02T13:16:14,053   adding 'pilotpy/pl.py'
2026-06-02T13:16:14,054   adding 'pilotpy/tl.py'
2026-06-02T13:16:14,055   adding 'pilotpy/plot/__init__.py'
2026-06-02T13:16:14,057   adding 'pilotpy/plot/curve_activity.py'
2026-06-02T13:16:14,061   adding 'pilotpy/plot/gene_selection_analysis.py'
2026-06-02T13:16:14,072   adding 'pilotpy/plot/ploting.py'
2026-06-02T13:16:14,075   adding 'pilotpy/plot/pseudobulk_DE_analysis.py'
2026-06-02T13:16:14,079   adding 'pilotpy/tools/Cell_gene_selection.py'
2026-06-02T13:16:14,081   adding 'pilotpy/tools/Gene_cluster_specific.py'
2026-06-02T13:16:14,085   adding 'pilotpy/tools/Gene_cluster_specific_functions.py'
2026-06-02T13:16:14,092   adding 'pilotpy/tools/Trajectory.py'
2026-06-02T13:16:14,094   adding 'pilotpy/tools/__init__.py'
2026-06-02T13:16:14,096   adding 'pilotpy/tools/patients_sub_clustering.py'
2026-06-02T13:16:14,098   adding 'pilotpy-2.0.12.dist-info/licenses/LICENSE'
2026-06-02T13:16:14,100   adding 'pilotpy-2.0.12.dist-info/METADATA'
2026-06-02T13:16:14,101   adding 'pilotpy-2.0.12.dist-info/WHEEL'
2026-06-02T13:16:14,102   adding 'pilotpy-2.0.12.dist-info/top_level.txt'
2026-06-02T13:16:14,102   adding 'pilotpy-2.0.12.dist-info/RECORD'
2026-06-02T13:16:14,105   removing build/bdist.linux-armv7l/wheel
2026-06-02T13:16:14,221   Building wheel for pilotpy (setup.py): finished with status 'done'
2026-06-02T13:16:14,225   Created wheel for pilotpy: filename=pilotpy-2.0.12-py3-none-any.whl size=75591 sha256=d402db407081670f9b95839731a3fc15c1f786f79352db252029d71f4328a71c
2026-06-02T13:16:14,226   Stored in directory: /tmp/pip-ephem-wheel-cache-htkgpvdg/wheels/3c/14/ef/843a82b5ce266b3edd997bda62e4cb099c39aca86e058625f8
2026-06-02T13:16:14,237 Successfully built pilotpy
2026-06-02T13:16:14,243 Removed build tracker: '/tmp/pip-build-tracker-droqjda2'