2026-06-03T03:59:17,993 Created temporary directory: /tmp/pip-ephem-wheel-cache-zjkm28c3
2026-06-03T03:59:17,995 Created temporary directory: /tmp/pip-build-tracker-tcbpbr9e
2026-06-03T03:59:17,996 Initialized build tracking at /tmp/pip-build-tracker-tcbpbr9e
2026-06-03T03:59:17,996 Created build tracker: /tmp/pip-build-tracker-tcbpbr9e
2026-06-03T03:59:17,997 Entered build tracker: /tmp/pip-build-tracker-tcbpbr9e
2026-06-03T03:59:17,997 Created temporary directory: /tmp/pip-wheel-esacfeuz
2026-06-03T03:59:18,000 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-03T03:59:18,003 Created temporary directory: /tmp/pip-ephem-wheel-cache-eno0sf63
2026-06-03T03:59:18,032 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-03T03:59:18,035 2 location(s) to search for versions of waafle:
2026-06-03T03:59:18,035 * https://pypi.org/simple/waafle/
2026-06-03T03:59:18,035 * https://www.piwheels.org/simple/waafle/
2026-06-03T03:59:18,036 Fetching project page and analyzing links: https://pypi.org/simple/waafle/
2026-06-03T03:59:18,037 Getting page https://pypi.org/simple/waafle/
2026-06-03T03:59:18,038 Found index url https://pypi.org/simple
2026-06-03T03:59:18,268 Fetched page https://pypi.org/simple/waafle/ as application/vnd.pypi.simple.v1+json
2026-06-03T03:59:18,270   Found link https://files.pythonhosted.org/packages/af/f8/566c013527c85894a21e006f38a96e991bbe8e097a99b65e6bb0614a2a47/waafle-0.1.0.dev0.tar.gz (from https://pypi.org/simple/waafle/), version: 0.1.0.dev0
2026-06-03T03:59:18,271   Found link https://files.pythonhosted.org/packages/e7/e1/e456ec21ad84b25982dbab812b52a53765dfc89fc75fa2d9cd542647b537/waafle-0.1.0.tar.gz (from https://pypi.org/simple/waafle/), version: 0.1.0
2026-06-03T03:59:18,271   Skipping link: No binaries permitted for waafle: https://files.pythonhosted.org/packages/0f/53/6d501a644032472055d6189bd50a7dd4b47f70de48fc4fc5d52c1db4ca89/waafle-1.0.0-py3-none-any.whl (from https://pypi.org/simple/waafle/)
2026-06-03T03:59:18,272   Found link https://files.pythonhosted.org/packages/f4/99/09ceb84b7d5018c057041217f579f9132e57f580cb2547eaa8fc53290c5b/waafle-1.0.0.tar.gz (from https://pypi.org/simple/waafle/), version: 1.0.0
2026-06-03T03:59:18,273   Found link https://files.pythonhosted.org/packages/47/53/ea5b79773cdb155b462c84f5ae4c6aef5a779837879284eaa9f1e7e37e21/waafle-1.1.0.tar.gz (from https://pypi.org/simple/waafle/), version: 1.1.0
2026-06-03T03:59:18,274   Skipping link: No binaries permitted for waafle: https://files.pythonhosted.org/packages/ee/79/0f2f6732e0d4f0b2403623f465347c3a29ebe07d268c5c64ce6f58548271/waafle-1.5.0-py3-none-any.whl (from https://pypi.org/simple/waafle/)
2026-06-03T03:59:18,274   Found link https://files.pythonhosted.org/packages/d6/f9/2b5459c2ca7d6c778e41a8f8f7f31b5aee30f705810bdb97432f300fecbf/waafle-1.5.0.tar.gz (from https://pypi.org/simple/waafle/), version: 1.5.0
2026-06-03T03:59:18,275 Fetching project page and analyzing links: https://www.piwheels.org/simple/waafle/
2026-06-03T03:59:18,276 Getting page https://www.piwheels.org/simple/waafle/
2026-06-03T03:59:18,277 Found index url https://www.piwheels.org/simple
2026-06-03T03:59:18,453 Fetched page https://www.piwheels.org/simple/waafle/ as text/html
2026-06-03T03:59:18,455   Skipping link: No binaries permitted for waafle: https://archive1.piwheels.org/simple/waafle/waafle-1.1.0-py3-none-any.whl#sha256=fe8063f8da0856f9464b5fb867420aa9d02b5dc5b15880b6d4e637bfd9b94080 (from https://www.piwheels.org/simple/waafle/)
2026-06-03T03:59:18,456   Skipping link: No binaries permitted for waafle: https://archive1.piwheels.org/simple/waafle/waafle-1.0.0-py3-none-any.whl#sha256=b35861d07e1c846582499893942a0674db437375d9305c4dbac60b6bbf248da5 (from https://www.piwheels.org/simple/waafle/)
2026-06-03T03:59:18,456   Skipping link: No binaries permitted for waafle: https://archive1.piwheels.org/simple/waafle/waafle-0.1.0-py3-none-any.whl#sha256=84d7dc0aa2c61e8094815636fedb546dcd8df0e6d75ce7200bdcf2029638ba52 (from https://www.piwheels.org/simple/waafle/)
2026-06-03T03:59:18,457   Skipping link: No binaries permitted for waafle: https://archive1.piwheels.org/simple/waafle/waafle-0.1.0.dev0-py3-none-any.whl#sha256=ac87a48cba6dbc5dac5f3493966a196fbde04e9c2590c4788e3d8aa5b931fa59 (from https://www.piwheels.org/simple/waafle/)
2026-06-03T03:59:18,458 Skipping link: not a file: https://www.piwheels.org/simple/waafle/
2026-06-03T03:59:18,458 Skipping link: not a file: https://pypi.org/simple/waafle/
2026-06-03T03:59:18,477 Given no hashes to check 1 links for project 'waafle': discarding no candidates
2026-06-03T03:59:18,495 Collecting waafle==1.5.0
2026-06-03T03:59:18,497   Created temporary directory: /tmp/pip-unpack-o5ld8yxh
2026-06-03T03:59:18,659   Downloading waafle-1.5.0.tar.gz (41 kB)
2026-06-03T03:59:18,747   Added waafle==1.5.0 from https://files.pythonhosted.org/packages/d6/f9/2b5459c2ca7d6c778e41a8f8f7f31b5aee30f705810bdb97432f300fecbf/waafle-1.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-tcbpbr9e'
2026-06-03T03:59:18,749   Running setup.py (path:/tmp/pip-wheel-esacfeuz/waafle_ec2fde9d22794e1ea96352572f6ae905/setup.py) egg_info for package waafle
2026-06-03T03:59:18,750   Created temporary directory: /tmp/pip-pip-egg-info-2rgyh3qa
2026-06-03T03:59:18,750   Preparing metadata (setup.py): started
2026-06-03T03:59:18,752   Running command python setup.py egg_info
2026-06-03T03:59:19,724   running egg_info
2026-06-03T03:59:19,752   creating /tmp/pip-pip-egg-info-2rgyh3qa/waafle.egg-info
2026-06-03T03:59:19,753   writing /tmp/pip-pip-egg-info-2rgyh3qa/waafle.egg-info/PKG-INFO
2026-06-03T03:59:19,757   writing dependency_links to /tmp/pip-pip-egg-info-2rgyh3qa/waafle.egg-info/dependency_links.txt
2026-06-03T03:59:19,759   writing entry points to /tmp/pip-pip-egg-info-2rgyh3qa/waafle.egg-info/entry_points.txt
2026-06-03T03:59:19,761   writing requirements to /tmp/pip-pip-egg-info-2rgyh3qa/waafle.egg-info/requires.txt
2026-06-03T03:59:19,762   writing top-level names to /tmp/pip-pip-egg-info-2rgyh3qa/waafle.egg-info/top_level.txt
2026-06-03T03:59:19,764   writing manifest file '/tmp/pip-pip-egg-info-2rgyh3qa/waafle.egg-info/SOURCES.txt'
2026-06-03T03:59:19,851   reading manifest file '/tmp/pip-pip-egg-info-2rgyh3qa/waafle.egg-info/SOURCES.txt'
2026-06-03T03:59:19,853   adding license file 'LICENSE.txt'
2026-06-03T03:59:19,856   writing manifest file '/tmp/pip-pip-egg-info-2rgyh3qa/waafle.egg-info/SOURCES.txt'
2026-06-03T03:59:19,967   Preparing metadata (setup.py): finished with status 'done'
2026-06-03T03:59:19,972   Source in /tmp/pip-wheel-esacfeuz/waafle_ec2fde9d22794e1ea96352572f6ae905 has version 1.5.0, which satisfies requirement waafle==1.5.0 from https://files.pythonhosted.org/packages/d6/f9/2b5459c2ca7d6c778e41a8f8f7f31b5aee30f705810bdb97432f300fecbf/waafle-1.5.0.tar.gz
2026-06-03T03:59:19,973   Removed waafle==1.5.0 from https://files.pythonhosted.org/packages/d6/f9/2b5459c2ca7d6c778e41a8f8f7f31b5aee30f705810bdb97432f300fecbf/waafle-1.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-tcbpbr9e'
2026-06-03T03:59:19,980 Created temporary directory: /tmp/pip-unpack-ityqeb55
2026-06-03T03:59:19,981 Building wheels for collected packages: waafle
2026-06-03T03:59:19,985   Created temporary directory: /tmp/pip-wheel-52i753t0
2026-06-03T03:59:19,986   Building wheel for waafle (setup.py): started
2026-06-03T03:59:19,987   Destination directory: /tmp/pip-wheel-52i753t0
2026-06-03T03:59:19,988   Running command python setup.py bdist_wheel
2026-06-03T03:59:20,823   running bdist_wheel
2026-06-03T03:59:20,957   running build
2026-06-03T03:59:20,958   running build_py
2026-06-03T03:59:20,989   creating build/lib/waafle
2026-06-03T03:59:20,991   copying waafle/utils.py -> build/lib/waafle
2026-06-03T03:59:20,994   copying waafle/waafle_orgscorer.py -> build/lib/waafle
2026-06-03T03:59:20,997   copying waafle/waafle_search.py -> build/lib/waafle
2026-06-03T03:59:20,999   copying waafle/waafle_genecaller.py -> build/lib/waafle
2026-06-03T03:59:21,001   copying waafle/waafle_qc.py -> build/lib/waafle
2026-06-03T03:59:21,003   copying waafle/__init__.py -> build/lib/waafle
2026-06-03T03:59:21,005   copying waafle/waafle_junctions.py -> build/lib/waafle
2026-06-03T03:59:21,037   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-06-03T03:59:21,037   !!

2026-06-03T03:59:21,038           ********************************************************************************
2026-06-03T03:59:21,038           Please avoid running ``setup.py`` directly.
2026-06-03T03:59:21,039           Instead, use pypa/build, pypa/installer or other
2026-06-03T03:59:21,039           standards-based tools.

2026-06-03T03:59:21,040           This deprecation is overdue, please update your project and remove deprecated
2026-06-03T03:59:21,041           calls to avoid build errors in the future.

2026-06-03T03:59:21,042           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-06-03T03:59:21,042           ********************************************************************************

2026-06-03T03:59:21,044   !!
2026-06-03T03:59:21,044     self.initialize_options()
2026-06-03T03:59:21,066   installing to build/bdist.linux-armv7l/wheel
2026-06-03T03:59:21,066   running install
2026-06-03T03:59:21,089   running install_lib
2026-06-03T03:59:21,117   creating build/bdist.linux-armv7l/wheel
2026-06-03T03:59:21,120   creating build/bdist.linux-armv7l/wheel/waafle
2026-06-03T03:59:21,121   copying build/lib/waafle/utils.py -> build/bdist.linux-armv7l/wheel/./waafle
2026-06-03T03:59:21,124   copying build/lib/waafle/waafle_orgscorer.py -> build/bdist.linux-armv7l/wheel/./waafle
2026-06-03T03:59:21,127   copying build/lib/waafle/waafle_search.py -> build/bdist.linux-armv7l/wheel/./waafle
2026-06-03T03:59:21,129   copying build/lib/waafle/waafle_genecaller.py -> build/bdist.linux-armv7l/wheel/./waafle
2026-06-03T03:59:21,131   copying build/lib/waafle/waafle_qc.py -> build/bdist.linux-armv7l/wheel/./waafle
2026-06-03T03:59:21,133   copying build/lib/waafle/__init__.py -> build/bdist.linux-armv7l/wheel/./waafle
2026-06-03T03:59:21,135   copying build/lib/waafle/waafle_junctions.py -> build/bdist.linux-armv7l/wheel/./waafle
2026-06-03T03:59:21,137   running install_egg_info
2026-06-03T03:59:21,172   running egg_info
2026-06-03T03:59:21,199   writing waafle.egg-info/PKG-INFO
2026-06-03T03:59:21,203   writing dependency_links to waafle.egg-info/dependency_links.txt
2026-06-03T03:59:21,204   writing entry points to waafle.egg-info/entry_points.txt
2026-06-03T03:59:21,206   writing requirements to waafle.egg-info/requires.txt
2026-06-03T03:59:21,207   writing top-level names to waafle.egg-info/top_level.txt
2026-06-03T03:59:21,236   reading manifest file 'waafle.egg-info/SOURCES.txt'
2026-06-03T03:59:21,239   adding license file 'LICENSE.txt'
2026-06-03T03:59:21,241   writing manifest file 'waafle.egg-info/SOURCES.txt'
2026-06-03T03:59:21,243   Copying waafle.egg-info to build/bdist.linux-armv7l/wheel/./waafle-1.5.0-py3.11.egg-info
2026-06-03T03:59:21,254   running install_scripts
2026-06-03T03:59:21,266   creating build/bdist.linux-armv7l/wheel/waafle-1.5.0.dist-info/WHEEL
2026-06-03T03:59:21,268   creating '/tmp/pip-wheel-52i753t0/waafle-1.5.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-03T03:59:21,270   adding 'waafle/__init__.py'
2026-06-03T03:59:21,274   adding 'waafle/utils.py'
2026-06-03T03:59:21,276   adding 'waafle/waafle_genecaller.py'
2026-06-03T03:59:21,278   adding 'waafle/waafle_junctions.py'
2026-06-03T03:59:21,283   adding 'waafle/waafle_orgscorer.py'
2026-06-03T03:59:21,285   adding 'waafle/waafle_qc.py'
2026-06-03T03:59:21,286   adding 'waafle/waafle_search.py'
2026-06-03T03:59:21,289   adding 'waafle-1.5.0.dist-info/licenses/LICENSE.txt'
2026-06-03T03:59:21,292   adding 'waafle-1.5.0.dist-info/METADATA'
2026-06-03T03:59:21,293   adding 'waafle-1.5.0.dist-info/WHEEL'
2026-06-03T03:59:21,294   adding 'waafle-1.5.0.dist-info/entry_points.txt'
2026-06-03T03:59:21,295   adding 'waafle-1.5.0.dist-info/top_level.txt'
2026-06-03T03:59:21,296   adding 'waafle-1.5.0.dist-info/RECORD'
2026-06-03T03:59:21,298   removing build/bdist.linux-armv7l/wheel
2026-06-03T03:59:21,414   Building wheel for waafle (setup.py): finished with status 'done'
2026-06-03T03:59:21,417   Created wheel for waafle: filename=waafle-1.5.0-py3-none-any.whl size=39063 sha256=9e957592c181feedcad37bda7f0fd5223096319ba998baf570185a6f7d589235
2026-06-03T03:59:21,418   Stored in directory: /tmp/pip-ephem-wheel-cache-eno0sf63/wheels/6e/50/6b/62ec5cbfa14e64a7c73690003e8b1e19ab6307980a1f99f62c
2026-06-03T03:59:21,433 Successfully built waafle
2026-06-03T03:59:21,437 Removed build tracker: '/tmp/pip-build-tracker-tcbpbr9e'