2026-06-04T15:29:59,406 Created temporary directory: /tmp/pip-ephem-wheel-cache-uue5k00b 2026-06-04T15:29:59,408 Created temporary directory: /tmp/pip-build-tracker-r5o0jbgm 2026-06-04T15:29:59,409 Initialized build tracking at /tmp/pip-build-tracker-r5o0jbgm 2026-06-04T15:29:59,409 Created build tracker: /tmp/pip-build-tracker-r5o0jbgm 2026-06-04T15:29:59,409 Entered build tracker: /tmp/pip-build-tracker-r5o0jbgm 2026-06-04T15:29:59,410 Created temporary directory: /tmp/pip-wheel-_y533qaf 2026-06-04T15:29:59,413 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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omicverse-2.2.1.tar.gz (13.9 MB) 2026-06-04T15:30:07,669 Added omicverse==2.2.1 from https://files.pythonhosted.org/packages/95/5f/ad4d1dee7c2e4d17dc58e51cd4beb842f74bd4de8c6f1aba951e67fe7712/omicverse-2.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-r5o0jbgm' 2026-06-04T15:30:07,679 Created temporary directory: /tmp/pip-build-env-bhwvqyn_ 2026-06-04T15:30:07,683 Installing build dependencies: started 2026-06-04T15:30:07,684 Running command pip subprocess to install build dependencies 2026-06-04T15:30:08,815 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-04T15:30:09,260 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-04T15:30:09,283 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-04T15:30:11,042 Collecting setuptools>=61 2026-06-04T15:30:11,043 Obtaining dependency information for setuptools>=61 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-04T15:30:11,057 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-04T15:30:11,288 Collecting wheel 2026-06-04T15:30:11,289 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-06-04T15:30:11,303 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-06-04T15:30:13,337 Collecting Cython 2026-06-04T15:30:13,338 Obtaining dependency information for Cython from https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl.metadata 2026-06-04T15:30:13,352 Using cached https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl.metadata (7.1 kB) 2026-06-04T15:30:13,535 Collecting packaging>=24.0 2026-06-04T15:30:13,536 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-06-04T15:30:13,548 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-06-04T15:30:13,803 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-04T15:30:14,592 Using cached https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl (11.2 MB) 2026-06-04T15:30:14,809 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-04T15:30:14,884 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-04T15:30:14,915 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-04T15:30:15,731 Using cached https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl (11.2 MB) 2026-06-04T15:30:16,033 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-04T15:30:16,123 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-04T15:30:18,820 Installing collected packages: setuptools, packaging, Cython, wheel 2026-06-04T15:30:25,790 Creating /tmp/pip-build-env-bhwvqyn_/overlay/local/bin 2026-06-04T15:30:25,792 changing mode of /tmp/pip-build-env-bhwvqyn_/overlay/local/bin/cygdb to 755 2026-06-04T15:30:25,794 changing mode of /tmp/pip-build-env-bhwvqyn_/overlay/local/bin/cython to 755 2026-06-04T15:30:25,796 changing mode of /tmp/pip-build-env-bhwvqyn_/overlay/local/bin/cythonize to 755 2026-06-04T15:30:25,937 changing mode of /tmp/pip-build-env-bhwvqyn_/overlay/local/bin/wheel to 755 2026-06-04T15:30:25,966 Successfully installed Cython-3.2.5 packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-06-04T15:30:26,356 Installing build dependencies: finished with status 'done' 2026-06-04T15:30:26,363 Getting requirements to build wheel: started 2026-06-04T15:30:26,364 Running command Getting requirements to build wheel 2026-06-04T15:30:27,132 /tmp/pip-build-env-bhwvqyn_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-04T15:30:27,132 !! 2026-06-04T15:30:27,133 ******************************************************************************** 2026-06-04T15:30:27,133 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-04T15:30:27,134 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-04T15:30:27,135 or your builds will no longer be supported. 2026-06-04T15:30:27,136 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-04T15:30:27,136 ******************************************************************************** 2026-06-04T15:30:27,137 !! 2026-06-04T15:30:27,138 corresp(dist, value, root_dir) 2026-06-04T15:30:27,431 running egg_info 2026-06-04T15:30:27,438 writing omicverse.egg-info/PKG-INFO 2026-06-04T15:30:27,474 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-06-04T15:30:27,476 writing entry points to omicverse.egg-info/entry_points.txt 2026-06-04T15:30:27,496 writing requirements to omicverse.egg-info/requires.txt 2026-06-04T15:30:27,498 writing top-level names to omicverse.egg-info/top_level.txt 2026-06-04T15:30:27,794 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-04T15:30:27,873 reading manifest template 'MANIFEST.in' 2026-06-04T15:30:29,120 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-06-04T15:30:30,916 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-06-04T15:30:31,519 warning: no files found matching '*.yml' under directory 'omicverse' 2026-06-04T15:30:36,713 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-06-04T15:30:37,396 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-06-04T15:30:37,988 warning: no files found matching '*.svg' under directory 'omicverse' 2026-06-04T15:30:38,587 warning: no files found matching '*.ico' under directory 'omicverse' 2026-06-04T15:30:39,167 warning: no files found matching '*.db' under directory 'omicverse' 2026-06-04T15:30:39,792 warning: no files found matching '*.npz' under directory 'omicverse' 2026-06-04T15:30:40,352 warning: no files found matching '*.gz' under directory 'omicverse' 2026-06-04T15:30:40,357 no previously-included directories found matching '.git' 2026-06-04T15:30:40,361 no previously-included directories found matching '.github' 2026-06-04T15:30:40,365 no previously-included directories found matching '.claude' 2026-06-04T15:30:40,370 no previously-included directories found matching '.pytest_cache' 2026-06-04T15:30:40,374 no previously-included directories found matching '.ruff_cache' 2026-06-04T15:30:40,378 no previously-included directories found matching '.vscode' 2026-06-04T15:30:40,382 no previously-included directories found matching 'docs' 2026-06-04T15:30:40,386 no previously-included directories found matching 'tests' 2026-06-04T15:30:40,390 no previously-included directories found matching 'OvIntelligence' 2026-06-04T15:30:40,394 no previously-included directories found matching 'READMEM' 2026-06-04T15:30:40,399 no previously-included directories found matching 'omicverse_guide' 2026-06-04T15:30:40,403 no previously-included directories found matching 'omicverse_web' 2026-06-04T15:30:40,407 no previously-included directories found matching 'tmp' 2026-06-04T15:30:40,411 no previously-included directories found matching 'tmp_omicverse' 2026-06-04T15:30:40,416 no previously-included directories found matching 'Skill_Seekers' 2026-06-04T15:30:40,423 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-06-04T15:30:40,433 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-06-04T15:30:40,441 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-06-04T15:30:40,442 adding license file 'LICENSE' 2026-06-04T15:30:40,539 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-04T15:30:40,656 Getting requirements to build wheel: finished with status 'done' 2026-06-04T15:30:40,661 Created temporary directory: /tmp/pip-modern-metadata-p6knkxn6 2026-06-04T15:30:40,663 Preparing metadata (pyproject.toml): started 2026-06-04T15:30:40,664 Running command Preparing metadata (pyproject.toml) 2026-06-04T15:30:41,319 /tmp/pip-build-env-bhwvqyn_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-04T15:30:41,319 !! 2026-06-04T15:30:41,320 ******************************************************************************** 2026-06-04T15:30:41,321 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-04T15:30:41,322 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-04T15:30:41,322 or your builds will no longer be supported. 2026-06-04T15:30:41,323 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-04T15:30:41,324 ******************************************************************************** 2026-06-04T15:30:41,325 !! 2026-06-04T15:30:41,325 corresp(dist, value, root_dir) 2026-06-04T15:30:41,616 running dist_info 2026-06-04T15:30:41,627 creating /tmp/pip-modern-metadata-p6knkxn6/omicverse.egg-info 2026-06-04T15:30:41,628 writing /tmp/pip-modern-metadata-p6knkxn6/omicverse.egg-info/PKG-INFO 2026-06-04T15:30:41,664 writing dependency_links to /tmp/pip-modern-metadata-p6knkxn6/omicverse.egg-info/dependency_links.txt 2026-06-04T15:30:41,666 writing entry points to /tmp/pip-modern-metadata-p6knkxn6/omicverse.egg-info/entry_points.txt 2026-06-04T15:30:41,685 writing requirements to /tmp/pip-modern-metadata-p6knkxn6/omicverse.egg-info/requires.txt 2026-06-04T15:30:41,687 writing top-level names to /tmp/pip-modern-metadata-p6knkxn6/omicverse.egg-info/top_level.txt 2026-06-04T15:30:41,688 writing manifest file '/tmp/pip-modern-metadata-p6knkxn6/omicverse.egg-info/SOURCES.txt' 2026-06-04T15:30:41,932 reading manifest file '/tmp/pip-modern-metadata-p6knkxn6/omicverse.egg-info/SOURCES.txt' 2026-06-04T15:30:41,934 reading manifest template 'MANIFEST.in' 2026-06-04T15:30:43,118 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-06-04T15:30:44,890 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-06-04T15:30:45,465 warning: no files found matching '*.yml' under directory 'omicverse' 2026-06-04T15:30:50,696 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-06-04T15:30:51,313 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-06-04T15:30:51,893 warning: no files found matching '*.svg' under directory 'omicverse' 2026-06-04T15:30:52,501 warning: no files found matching '*.ico' under directory 'omicverse' 2026-06-04T15:30:53,074 warning: no files found matching '*.db' under directory 'omicverse' 2026-06-04T15:30:53,637 warning: no files found matching '*.npz' under directory 'omicverse' 2026-06-04T15:30:54,210 warning: no files found matching '*.gz' under directory 'omicverse' 2026-06-04T15:30:54,213 no previously-included directories found matching '.git' 2026-06-04T15:30:54,215 no previously-included directories found matching '.github' 2026-06-04T15:30:54,218 no previously-included directories found matching '.claude' 2026-06-04T15:30:54,220 no previously-included directories found matching '.pytest_cache' 2026-06-04T15:30:54,222 no previously-included directories found matching '.ruff_cache' 2026-06-04T15:30:54,225 no previously-included directories found matching '.vscode' 2026-06-04T15:30:54,227 no previously-included directories found matching 'docs' 2026-06-04T15:30:54,229 no previously-included directories found matching 'tests' 2026-06-04T15:30:54,232 no previously-included directories found matching 'OvIntelligence' 2026-06-04T15:30:54,234 no previously-included directories found matching 'READMEM' 2026-06-04T15:30:54,236 no previously-included directories found matching 'omicverse_guide' 2026-06-04T15:30:54,239 no previously-included directories found matching 'omicverse_web' 2026-06-04T15:30:54,241 no previously-included directories found matching 'tmp' 2026-06-04T15:30:54,244 no previously-included directories found matching 'tmp_omicverse' 2026-06-04T15:30:54,246 no previously-included directories found matching 'Skill_Seekers' 2026-06-04T15:30:54,251 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-06-04T15:30:54,258 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-06-04T15:30:54,263 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-06-04T15:30:54,263 adding license file 'LICENSE' 2026-06-04T15:30:54,336 writing manifest file '/tmp/pip-modern-metadata-p6knkxn6/omicverse.egg-info/SOURCES.txt' 2026-06-04T15:30:54,339 creating '/tmp/pip-modern-metadata-p6knkxn6/omicverse-2.2.1.dist-info' 2026-06-04T15:30:54,488 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-04T15:30:54,504 Source in /tmp/pip-wheel-_y533qaf/omicverse_a68564bfc770494d974f1a8bf9670bc1 has version 2.2.1, which satisfies requirement omicverse==2.2.1 from https://files.pythonhosted.org/packages/95/5f/ad4d1dee7c2e4d17dc58e51cd4beb842f74bd4de8c6f1aba951e67fe7712/omicverse-2.2.1.tar.gz 2026-06-04T15:30:54,505 Removed omicverse==2.2.1 from https://files.pythonhosted.org/packages/95/5f/ad4d1dee7c2e4d17dc58e51cd4beb842f74bd4de8c6f1aba951e67fe7712/omicverse-2.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-r5o0jbgm' 2026-06-04T15:30:54,532 Created temporary directory: /tmp/pip-unpack-ktsu7qw1 2026-06-04T15:30:54,533 Building wheels for collected packages: omicverse 2026-06-04T15:30:54,538 Created temporary directory: /tmp/pip-wheel-m1woznyd 2026-06-04T15:30:54,539 Destination directory: /tmp/pip-wheel-m1woznyd 2026-06-04T15:30:54,541 Building wheel for omicverse (pyproject.toml): started 2026-06-04T15:30:54,542 Running command Building wheel for omicverse (pyproject.toml) 2026-06-04T15:30:55,211 /tmp/pip-build-env-bhwvqyn_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-04T15:30:55,212 !! 2026-06-04T15:30:55,213 ******************************************************************************** 2026-06-04T15:30:55,214 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-04T15:30:55,215 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-04T15:30:55,215 or your builds will no longer be supported. 2026-06-04T15:30:55,217 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-04T15:30:55,217 ******************************************************************************** 2026-06-04T15:30:55,219 !! 2026-06-04T15:30:55,219 corresp(dist, value, root_dir) 2026-06-04T15:30:55,499 running bdist_wheel 2026-06-04T15:30:55,519 running build 2026-06-04T15:30:55,520 running build_py 2026-06-04T15:30:55,527 creating build/lib/omicverse 2026-06-04T15:30:55,529 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-06-04T15:30:55,531 copying omicverse/_registry.py -> build/lib/omicverse 2026-06-04T15:30:55,535 copying omicverse/_monitor.py -> build/lib/omicverse 2026-06-04T15:30:55,537 copying omicverse/cli.py -> build/lib/omicverse 2026-06-04T15:30:55,539 copying omicverse/_settings.py -> build/lib/omicverse 2026-06-04T15:30:55,542 copying omicverse/__init__.py -> build/lib/omicverse 2026-06-04T15:30:55,545 copying omicverse/_oom_compat.py -> build/lib/omicverse 2026-06-04T15:30:55,547 copying omicverse/_optional.py -> build/lib/omicverse 2026-06-04T15:30:55,549 copying omicverse/claw.py -> build/lib/omicverse 2026-06-04T15:30:55,552 creating build/lib/omicverse/bulk 2026-06-04T15:30:55,553 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,555 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,557 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,559 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,562 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,564 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,568 copying omicverse/bulk/_wgcna.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,570 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,572 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,583 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,586 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,589 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-06-04T15:30:55,592 creating build/lib/omicverse/utils 2026-06-04T15:30:55,593 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,596 copying omicverse/utils/agent_backend_dashscope.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,598 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,600 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,602 copying omicverse/utils/_metabolights.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,604 copying omicverse/utils/_compat.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,606 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,608 copying omicverse/utils/registry.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,610 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,612 copying omicverse/utils/agent_backend_openai.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,616 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,618 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,620 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,623 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,626 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,627 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,630 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,631 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,634 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,636 copying omicverse/utils/agent_backend_common.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,639 copying omicverse/utils/agent_backend_streaming.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,641 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,644 copying omicverse/utils/_memory.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,646 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,648 copying omicverse/utils/_ovagent_lookup.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,650 copying omicverse/utils/_gene_id_conversion.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,652 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,654 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,656 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,659 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,661 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,662 copying omicverse/utils/agent_backend_anthropic.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,665 copying omicverse/utils/_sample_metadata_alignment.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,668 copying omicverse/utils/agent_backend_gemini.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,670 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,673 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,677 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,680 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,683 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,685 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,687 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,690 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,693 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,697 copying omicverse/utils/_ovagent_paths.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,699 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,702 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,705 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,708 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-06-04T15:30:55,711 creating build/lib/omicverse/space 2026-06-04T15:30:55,712 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-06-04T15:30:55,715 copying omicverse/space/_tissue_zones.py -> build/lib/omicverse/space 2026-06-04T15:30:55,718 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-06-04T15:30:55,721 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-06-04T15:30:55,724 copying omicverse/space/_cellcharter.py -> build/lib/omicverse/space 2026-06-04T15:30:55,726 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-06-04T15:30:55,729 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-06-04T15:30:55,732 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-06-04T15:30:55,735 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-06-04T15:30:55,737 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-06-04T15:30:55,741 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-06-04T15:30:55,744 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-06-04T15:30:55,747 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-06-04T15:30:55,750 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-06-04T15:30:55,754 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-06-04T15:30:55,756 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-06-04T15:30:55,760 creating build/lib/omicverse/mcp 2026-06-04T15:30:55,762 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,764 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,766 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,769 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,772 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,775 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,777 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,781 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,783 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,788 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,790 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,792 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,794 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-06-04T15:30:55,797 creating build/lib/omicverse/report 2026-06-04T15:30:55,798 copying omicverse/report/_html.py -> build/lib/omicverse/report 2026-06-04T15:30:55,800 copying omicverse/report/_plots.py -> build/lib/omicverse/report 2026-06-04T15:30:55,802 copying omicverse/report/_scanner.py -> build/lib/omicverse/report 2026-06-04T15:30:55,804 copying omicverse/report/_provenance.py -> build/lib/omicverse/report 2026-06-04T15:30:55,807 copying omicverse/report/__init__.py -> build/lib/omicverse/report 2026-06-04T15:30:55,809 creating build/lib/omicverse/mol 2026-06-04T15:30:55,810 copying omicverse/mol/_dock.py -> build/lib/omicverse/mol 2026-06-04T15:30:55,813 copying omicverse/mol/_drugs.py -> build/lib/omicverse/mol 2026-06-04T15:30:55,815 copying omicverse/mol/_structure.py -> build/lib/omicverse/mol 2026-06-04T15:30:55,818 copying omicverse/mol/_check.py -> build/lib/omicverse/mol 2026-06-04T15:30:55,820 copying omicverse/mol/_pocket.py -> build/lib/omicverse/mol 2026-06-04T15:30:55,822 copying omicverse/mol/_view.py -> build/lib/omicverse/mol 2026-06-04T15:30:55,824 copying omicverse/mol/__init__.py -> build/lib/omicverse/mol 2026-06-04T15:30:55,827 creating build/lib/omicverse/llm 2026-06-04T15:30:55,828 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,830 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,834 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,836 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,840 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,845 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,848 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,851 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,854 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,858 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,861 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,863 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-06-04T15:30:55,866 creating build/lib/omicverse/genetics 2026-06-04T15:30:55,867 copying omicverse/genetics/_gsmap.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,870 copying omicverse/genetics/_finemap.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,872 copying omicverse/genetics/_twas.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,874 copying omicverse/genetics/_gwas.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,877 copying omicverse/genetics/_scdrs.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,879 copying omicverse/genetics/_utils.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,882 copying omicverse/genetics/_mr.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,884 copying omicverse/genetics/_simulate.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,886 copying omicverse/genetics/io.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,889 copying omicverse/genetics/_eqtl.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,891 copying omicverse/genetics/_coloc.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,893 copying omicverse/genetics/_ldsc.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,896 copying omicverse/genetics/plotting.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,898 copying omicverse/genetics/__init__.py -> build/lib/omicverse/genetics 2026-06-04T15:30:55,901 creating build/lib/omicverse/micro 2026-06-04T15:30:55,902 copying omicverse/micro/_phylo.py -> build/lib/omicverse/micro 2026-06-04T15:30:55,904 copying omicverse/micro/_utils.py -> build/lib/omicverse/micro 2026-06-04T15:30:55,906 copying omicverse/micro/_meta.py -> build/lib/omicverse/micro 2026-06-04T15:30:55,908 copying omicverse/micro/_pair.py -> build/lib/omicverse/micro 2026-06-04T15:30:55,911 copying omicverse/micro/_ord.py -> build/lib/omicverse/micro 2026-06-04T15:30:55,913 copying omicverse/micro/_diversity.py -> build/lib/omicverse/micro 2026-06-04T15:30:55,915 copying omicverse/micro/_pp.py -> build/lib/omicverse/micro 2026-06-04T15:30:55,918 copying omicverse/micro/__init__.py -> build/lib/omicverse/micro 2026-06-04T15:30:55,920 copying omicverse/micro/_da.py -> build/lib/omicverse/micro 2026-06-04T15:30:55,923 creating build/lib/omicverse/pp 2026-06-04T15:30:55,924 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,927 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,929 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,932 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,934 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,938 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,941 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,944 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,947 copying omicverse/pp/_tsne_cpu.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,949 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,952 copying omicverse/pp/_doubletfinder.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,954 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,957 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,959 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,961 copying omicverse/pp/_leiden_gpu.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,964 copying omicverse/pp/_gpu_cache.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,966 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,968 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,970 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,972 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,975 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,977 copying omicverse/pp/_champ.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,979 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,983 copying omicverse/pp/_scdblfinder.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,985 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,987 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,990 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-06-04T15:30:55,993 creating build/lib/omicverse/metabol 2026-06-04T15:30:55,994 copying omicverse/metabol/_utils.py -> build/lib/omicverse/metabol 2026-06-04T15:30:55,996 copying omicverse/metabol/_lipidomics.py -> build/lib/omicverse/metabol 2026-06-04T15:30:55,998 copying omicverse/metabol/_norm.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,000 copying omicverse/metabol/_multifactor.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,002 copying omicverse/metabol/_mummichog.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,005 copying omicverse/metabol/_transform.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,007 copying omicverse/metabol/_correlation.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,010 copying omicverse/metabol/io.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,012 copying omicverse/metabol/_msea.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,014 copying omicverse/metabol/pymetabo.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,017 copying omicverse/metabol/_stats.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,020 copying omicverse/metabol/_impute.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,022 copying omicverse/metabol/plotting.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,025 copying omicverse/metabol/_integration.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,027 copying omicverse/metabol/_biomarker.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,029 copying omicverse/metabol/_plsda.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,031 copying omicverse/metabol/_id_mapping.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,034 copying omicverse/metabol/_batch.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,036 copying omicverse/metabol/__init__.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,038 copying omicverse/metabol/_fetchers.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,041 copying omicverse/metabol/_qc.py -> build/lib/omicverse/metabol 2026-06-04T15:30:56,044 creating build/lib/omicverse/airr 2026-06-04T15:30:56,045 copying omicverse/airr/_metrics.py -> build/lib/omicverse/airr 2026-06-04T15:30:56,048 copying omicverse/airr/io.py -> build/lib/omicverse/airr 2026-06-04T15:30:56,050 copying omicverse/airr/_bcr.py -> build/lib/omicverse/airr 2026-06-04T15:30:56,054 copying omicverse/airr/_tcr_gex.py -> build/lib/omicverse/airr 2026-06-04T15:30:56,058 copying omicverse/airr/_clonotype.py -> build/lib/omicverse/airr 2026-06-04T15:30:56,061 copying omicverse/airr/plotting.py -> build/lib/omicverse/airr 2026-06-04T15:30:56,064 copying omicverse/airr/_bulk.py -> build/lib/omicverse/airr 2026-06-04T15:30:56,068 copying omicverse/airr/_tcr.py -> build/lib/omicverse/airr 2026-06-04T15:30:56,073 copying omicverse/airr/__init__.py -> build/lib/omicverse/airr 2026-06-04T15:30:56,076 copying omicverse/airr/_qc.py -> build/lib/omicverse/airr 2026-06-04T15:30:56,079 creating build/lib/omicverse/protein 2026-06-04T15:30:56,080 copying omicverse/protein/_norm.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,083 copying omicverse/protein/_enrich.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,085 copying omicverse/protein/_simulate.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,088 copying omicverse/protein/io.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,091 copying omicverse/protein/_impute.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,094 copying omicverse/protein/plotting.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,097 copying omicverse/protein/_summarize.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,100 copying omicverse/protein/_design.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,102 copying omicverse/protein/__init__.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,105 copying omicverse/protein/_qc.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,107 copying omicverse/protein/_de.py -> build/lib/omicverse/protein 2026-06-04T15:30:56,111 creating build/lib/omicverse/alignment 2026-06-04T15:30:56,113 copying omicverse/alignment/dada2.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,116 copying omicverse/alignment/_db.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,118 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,122 copying omicverse/alignment/vsearch.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,125 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,128 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,130 copying omicverse/alignment/fasttree.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,133 copying omicverse/alignment/amplicon_16s.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,136 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,139 copying omicverse/alignment/simpleaf.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,142 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,145 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,148 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,151 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,153 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,155 copying omicverse/alignment/mafft.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,157 copying omicverse/alignment/phylogeny.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,159 copying omicverse/alignment/cutadapt.py -> build/lib/omicverse/alignment 2026-06-04T15:30:56,162 creating build/lib/omicverse/epi 2026-06-04T15:30:56,163 copying omicverse/epi/upstream.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,165 copying omicverse/epi/utils.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,167 copying omicverse/epi/_utils.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,169 copying omicverse/epi/data.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,171 copying omicverse/epi/datasets.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,172 copying omicverse/epi/pl.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,174 copying omicverse/epi/io.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,176 copying omicverse/epi/pp.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,178 copying omicverse/epi/single.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,180 copying omicverse/epi/bulk.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,182 copying omicverse/epi/tl.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,184 copying omicverse/epi/__init__.py -> build/lib/omicverse/epi 2026-06-04T15:30:56,187 creating build/lib/omicverse/ov_skill_seeker 2026-06-04T15:30:56,188 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-06-04T15:30:56,190 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-06-04T15:30:56,191 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-06-04T15:30:56,193 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-06-04T15:30:56,196 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-06-04T15:30:56,198 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-06-04T15:30:56,200 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-06-04T15:30:56,202 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-06-04T15:30:56,204 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-06-04T15:30:56,207 creating build/lib/omicverse/external 2026-06-04T15:30:56,208 copying omicverse/external/torch_tsne.py -> build/lib/omicverse/external 2026-06-04T15:30:56,211 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-06-04T15:30:56,214 creating build/lib/omicverse/es 2026-06-04T15:30:56,215 copying omicverse/es/_mlm.py -> build/lib/omicverse/es 2026-06-04T15:30:56,217 copying omicverse/es/_ucell.py -> build/lib/omicverse/es 2026-06-04T15:30:56,219 copying omicverse/es/_engine.py -> build/lib/omicverse/es 2026-06-04T15:30:56,222 copying omicverse/es/_decouple.py -> build/lib/omicverse/es 2026-06-04T15:30:56,224 copying omicverse/es/_mdt.py -> build/lib/omicverse/es 2026-06-04T15:30:56,226 copying omicverse/es/_gsea.py -> build/lib/omicverse/es 2026-06-04T15:30:56,229 copying omicverse/es/_viper.py -> build/lib/omicverse/es 2026-06-04T15:30:56,231 copying omicverse/es/_ora.py -> build/lib/omicverse/es 2026-06-04T15:30:56,234 copying omicverse/es/_datatype.py -> build/lib/omicverse/es 2026-06-04T15:30:56,236 copying omicverse/es/_net.py -> build/lib/omicverse/es 2026-06-04T15:30:56,238 copying omicverse/es/_aucell.py -> build/lib/omicverse/es 2026-06-04T15:30:56,240 copying omicverse/es/_consensus.py -> build/lib/omicverse/es 2026-06-04T15:30:56,242 copying omicverse/es/_waggr.py -> build/lib/omicverse/es 2026-06-04T15:30:56,245 copying omicverse/es/_method.py -> build/lib/omicverse/es 2026-06-04T15:30:56,246 copying omicverse/es/_odeps.py -> build/lib/omicverse/es 2026-06-04T15:30:56,248 copying omicverse/es/_ulm.py -> build/lib/omicverse/es 2026-06-04T15:30:56,251 copying omicverse/es/_zscore.py -> build/lib/omicverse/es 2026-06-04T15:30:56,253 copying omicverse/es/_query_set.py -> build/lib/omicverse/es 2026-06-04T15:30:56,255 copying omicverse/es/_pv.py -> build/lib/omicverse/es 2026-06-04T15:30:56,257 copying omicverse/es/_data.py -> build/lib/omicverse/es 2026-06-04T15:30:56,259 copying omicverse/es/_methods.py -> build/lib/omicverse/es 2026-06-04T15:30:56,261 copying omicverse/es/__init__.py -> build/lib/omicverse/es 2026-06-04T15:30:56,263 copying omicverse/es/_udt.py -> build/lib/omicverse/es 2026-06-04T15:30:56,265 copying omicverse/es/_gsva.py -> build/lib/omicverse/es 2026-06-04T15:30:56,268 copying omicverse/es/_run.py -> build/lib/omicverse/es 2026-06-04T15:30:56,271 creating build/lib/omicverse/io 2026-06-04T15:30:56,272 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-06-04T15:30:56,275 creating build/lib/omicverse/pl 2026-06-04T15:30:56,276 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,279 copying omicverse/pl/_scatterplot_backend.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,283 copying omicverse/pl/_funkyheatmap.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,285 copying omicverse/pl/_scanpy_compat.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,288 copying omicverse/pl/_plot1cell.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,290 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,293 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,296 copying omicverse/pl/_metacell.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,298 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,301 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,304 copying omicverse/pl/_cnv.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,306 copying omicverse/pl/_trajectory.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,310 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,313 copying omicverse/pl/_plot_backend.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,316 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,319 copying omicverse/pl/_ccc.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,327 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,331 copying omicverse/pl/_metabolism.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,333 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,336 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,339 copying omicverse/pl/_branch_streamplot.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,341 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,344 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,349 copying omicverse/pl/_heatmap_marsilea.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,353 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,355 copying omicverse/pl/_nanostring.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,358 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,364 copying omicverse/pl/_venn_backend.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,366 copying omicverse/pl/_perturbation.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,370 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,373 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,375 copying omicverse/pl/_report.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,378 copying omicverse/pl/_dynamic_trends.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,381 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,383 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,385 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,387 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-06-04T15:30:56,391 creating build/lib/omicverse/jarvis 2026-06-04T15:30:56,392 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,394 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,396 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,399 copying omicverse/jarvis/gemini_cli_oauth.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,402 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,404 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,406 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,410 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,412 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,414 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,416 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,418 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,421 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,423 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-06-04T15:30:56,427 creating build/lib/omicverse/bulk2single 2026-06-04T15:30:56,428 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-06-04T15:30:56,431 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-06-04T15:30:56,434 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-06-04T15:30:56,436 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-06-04T15:30:56,438 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-06-04T15:30:56,441 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-06-04T15:30:56,444 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-06-04T15:30:56,446 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-06-04T15:30:56,449 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-06-04T15:30:56,451 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-06-04T15:30:56,455 creating build/lib/omicverse/single 2026-06-04T15:30:56,456 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-06-04T15:30:56,459 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-06-04T15:30:56,463 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-06-04T15:30:56,467 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-06-04T15:30:56,469 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-06-04T15:30:56,472 copying omicverse/single/_nmf.py -> build/lib/omicverse/single 2026-06-04T15:30:56,475 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-06-04T15:30:56,478 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-06-04T15:30:56,480 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-06-04T15:30:56,483 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-06-04T15:30:56,486 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-06-04T15:30:56,489 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-06-04T15:30:56,492 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-06-04T15:30:56,495 copying omicverse/single/_pseudobulk.py -> build/lib/omicverse/single 2026-06-04T15:30:56,497 copying omicverse/single/_comm.py -> build/lib/omicverse/single 2026-06-04T15:30:56,499 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-06-04T15:30:56,502 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-06-04T15:30:56,504 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-06-04T15:30:56,507 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-06-04T15:30:56,510 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-06-04T15:30:56,513 copying omicverse/single/_cnv.py -> build/lib/omicverse/single 2026-06-04T15:30:56,515 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-06-04T15:30:56,518 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-06-04T15:30:56,521 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-06-04T15:30:56,524 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-06-04T15:30:56,527 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-06-04T15:30:56,529 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-06-04T15:30:56,532 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-06-04T15:30:56,534 copying omicverse/single/_metabolism.py -> build/lib/omicverse/single 2026-06-04T15:30:56,537 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-06-04T15:30:56,539 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-06-04T15:30:56,541 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-06-04T15:30:56,544 copying omicverse/single/_monocle.py -> build/lib/omicverse/single 2026-06-04T15:30:56,547 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-06-04T15:30:56,550 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-06-04T15:30:56,552 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-06-04T15:30:56,555 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-06-04T15:30:56,557 copying omicverse/single/_stavia.py -> build/lib/omicverse/single 2026-06-04T15:30:56,560 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-06-04T15:30:56,563 copying omicverse/single/_pseudotime_fate.py -> build/lib/omicverse/single 2026-06-04T15:30:56,568 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-06-04T15:30:56,571 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-06-04T15:30:56,579 copying omicverse/single/_liana.py -> build/lib/omicverse/single 2026-06-04T15:30:56,582 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-06-04T15:30:56,584 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-06-04T15:30:56,587 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-06-04T15:30:56,588 copying omicverse/single/_perturb.py -> build/lib/omicverse/single 2026-06-04T15:30:56,592 copying omicverse/single/_dynamic_features.py -> build/lib/omicverse/single 2026-06-04T15:30:56,594 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-06-04T15:30:56,598 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-06-04T15:30:56,601 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-06-04T15:30:56,607 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-06-04T15:30:56,609 copying omicverse/single/_autoresolution.py -> build/lib/omicverse/single 2026-06-04T15:30:56,612 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-06-04T15:30:56,615 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-06-04T15:30:56,618 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-06-04T15:30:56,621 creating build/lib/omicverse/agent 2026-06-04T15:30:56,622 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-06-04T15:30:56,625 creating build/lib/omicverse/datasets 2026-06-04T15:30:56,626 copying omicverse/datasets/_ev.py -> build/lib/omicverse/datasets 2026-06-04T15:30:56,628 copying omicverse/datasets/_metabolism.py -> build/lib/omicverse/datasets 2026-06-04T15:30:56,631 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-06-04T15:30:56,634 copying omicverse/datasets/_timecourse.py -> build/lib/omicverse/datasets 2026-06-04T15:30:56,636 copying omicverse/datasets/_airr.py -> build/lib/omicverse/datasets 2026-06-04T15:30:56,638 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-06-04T15:30:56,640 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-06-04T15:30:56,642 copying omicverse/datasets/_genetics.py -> build/lib/omicverse/datasets 2026-06-04T15:30:56,644 copying omicverse/datasets/_ambient.py -> build/lib/omicverse/datasets 2026-06-04T15:30:56,647 copying omicverse/datasets/_protein.py -> build/lib/omicverse/datasets 2026-06-04T15:30:56,649 creating build/lib/omicverse/bulk/_alignment 2026-06-04T15:30:56,650 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-06-04T15:30:56,653 creating build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,654 copying omicverse/utils/ovagent/repair_loop.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,657 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,660 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,662 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,665 copying omicverse/utils/ovagent/session_facade.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,667 copying omicverse/utils/ovagent/analysis_transformer.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,670 copying omicverse/utils/ovagent/turn_artifacts.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,672 copying omicverse/utils/ovagent/tool_registry.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,675 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,678 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,680 copying omicverse/utils/ovagent/analysis_diagnostics.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,683 copying omicverse/utils/ovagent/permission_policy.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,685 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,687 copying omicverse/utils/ovagent/analysis_sandbox.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,690 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,693 copying omicverse/utils/ovagent/context_budget.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,696 copying omicverse/utils/ovagent/prompt_templates.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,699 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,701 copying omicverse/utils/ovagent/codegen_tool_facade.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,703 copying omicverse/utils/ovagent/tool_runtime_io.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,705 copying omicverse/utils/ovagent/tool_runtime_web.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,707 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,710 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,713 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,715 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,717 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,719 copying omicverse/utils/ovagent/turn_followup.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,721 copying omicverse/utils/ovagent/tool_runtime_workspace.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,723 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,725 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,728 copying omicverse/utils/ovagent/tool_scheduler.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,730 copying omicverse/utils/ovagent/event_stream.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,732 copying omicverse/utils/ovagent/tool_runtime_exec.py -> build/lib/omicverse/utils/ovagent 2026-06-04T15:30:56,735 creating build/lib/omicverse/utils/biocontext 2026-06-04T15:30:56,736 copying omicverse/utils/biocontext/_tools.py -> build/lib/omicverse/utils/biocontext 2026-06-04T15:30:56,739 copying omicverse/utils/biocontext/_client.py -> build/lib/omicverse/utils/biocontext 2026-06-04T15:30:56,741 copying omicverse/utils/biocontext/__init__.py -> build/lib/omicverse/utils/biocontext 2026-06-04T15:30:56,743 creating build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,744 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,747 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,749 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,751 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,754 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,756 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,759 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,761 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,764 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,766 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,769 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,771 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,774 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-06-04T15:30:56,777 creating build/lib/omicverse/utils/verifier 2026-06-04T15:30:56,778 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-06-04T15:30:56,780 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-06-04T15:30:56,783 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-06-04T15:30:56,785 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-06-04T15:30:56,788 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-06-04T15:30:56,791 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-06-04T15:30:56,793 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-06-04T15:30:56,795 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-06-04T15:30:56,797 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-06-04T15:30:56,800 creating build/lib/omicverse/utils/harness 2026-06-04T15:30:56,801 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-06-04T15:30:56,803 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-06-04T15:30:56,806 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-06-04T15:30:56,808 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-06-04T15:30:56,810 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-06-04T15:30:56,813 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-06-04T15:30:56,815 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-06-04T15:30:56,817 creating build/lib/omicverse/utils/gpuex 2026-06-04T15:30:56,818 copying omicverse/utils/gpuex/scipy.py -> build/lib/omicverse/utils/gpuex 2026-06-04T15:30:56,820 copying omicverse/utils/gpuex/__init__.py -> build/lib/omicverse/utils/gpuex 2026-06-04T15:30:56,823 creating build/lib/omicverse/utils/gpuex/umap 2026-06-04T15:30:56,824 copying omicverse/utils/gpuex/umap/_sgd_mlx.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-04T15:30:56,826 copying omicverse/utils/gpuex/umap/_ab.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-04T15:30:56,828 copying omicverse/utils/gpuex/umap/_sgd.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-04T15:30:56,830 copying omicverse/utils/gpuex/umap/_init.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-04T15:30:56,833 copying omicverse/utils/gpuex/umap/__init__.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-04T15:30:56,835 copying omicverse/utils/gpuex/umap/_embedding.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-04T15:30:56,837 creating build/lib/omicverse/space/histo 2026-06-04T15:30:56,839 copying omicverse/space/histo/_dispatch.py -> build/lib/omicverse/space/histo 2026-06-04T15:30:56,841 copying omicverse/space/histo/_istar.py -> build/lib/omicverse/space/histo 2026-06-04T15:30:56,843 copying omicverse/space/histo/_hest_fm.py -> build/lib/omicverse/space/histo 2026-06-04T15:30:56,846 copying omicverse/space/histo/_stflow.py -> build/lib/omicverse/space/histo 2026-06-04T15:30:56,849 copying omicverse/space/histo/_demo.py -> build/lib/omicverse/space/histo 2026-06-04T15:30:56,851 copying omicverse/space/histo/_embed.py -> build/lib/omicverse/space/histo 2026-06-04T15:30:56,853 copying omicverse/space/histo/__init__.py -> build/lib/omicverse/space/histo 2026-06-04T15:30:56,856 copying omicverse/space/histo/_stpath.py -> build/lib/omicverse/space/histo 2026-06-04T15:30:56,858 copying omicverse/space/histo/_io.py -> build/lib/omicverse/space/histo 2026-06-04T15:30:56,861 creating build/lib/omicverse/mcp/adapters 2026-06-04T15:30:56,862 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-06-04T15:30:56,864 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-06-04T15:30:56,867 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-06-04T15:30:56,869 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-06-04T15:30:56,870 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-06-04T15:30:56,873 creating build/lib/omicverse/llm/dr 2026-06-04T15:30:56,874 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-06-04T15:30:56,876 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-06-04T15:30:56,879 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-06-04T15:30:56,881 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-06-04T15:30:56,882 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-06-04T15:30:56,884 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-06-04T15:30:56,887 creating build/lib/omicverse/llm/utils 2026-06-04T15:30:56,888 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-06-04T15:30:56,890 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-06-04T15:30:56,892 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-06-04T15:30:56,895 creating build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,896 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,899 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,902 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,905 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,908 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,910 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,914 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,916 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,919 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,922 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,926 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,928 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-06-04T15:30:56,932 creating build/lib/omicverse/llm/UCE 2026-06-04T15:30:56,933 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-06-04T15:30:56,935 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-06-04T15:30:56,937 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-06-04T15:30:56,940 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-06-04T15:30:56,942 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-06-04T15:30:56,944 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-06-04T15:30:56,946 creating build/lib/omicverse/llm/scgpt 2026-06-04T15:30:56,948 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-06-04T15:30:56,950 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-06-04T15:30:56,952 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-06-04T15:30:56,954 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-06-04T15:30:56,957 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-06-04T15:30:56,959 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-06-04T15:30:56,961 creating build/lib/omicverse/llm/scfoundation 2026-06-04T15:30:56,962 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-06-04T15:30:56,965 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-06-04T15:30:56,967 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-06-04T15:30:56,969 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-06-04T15:30:56,971 creating build/lib/omicverse/llm/CellPLM 2026-06-04T15:30:56,972 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-06-04T15:30:56,974 creating build/lib/omicverse/llm/domain_research 2026-06-04T15:30:56,975 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-06-04T15:30:56,978 creating build/lib/omicverse/llm/dr/scope 2026-06-04T15:30:56,979 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-06-04T15:30:56,981 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-06-04T15:30:56,982 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-06-04T15:30:56,984 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-06-04T15:30:56,986 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-06-04T15:30:56,988 creating build/lib/omicverse/llm/dr/research 2026-06-04T15:30:56,989 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-06-04T15:30:56,991 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-06-04T15:30:56,993 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-06-04T15:30:56,995 creating build/lib/omicverse/llm/dr/verify 2026-06-04T15:30:56,996 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-06-04T15:30:56,999 creating build/lib/omicverse/llm/dr/write 2026-06-04T15:30:57,000 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-06-04T15:30:57,002 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-06-04T15:30:57,004 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-06-04T15:30:57,007 creating build/lib/omicverse/llm/dr/retrievers 2026-06-04T15:30:57,008 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-06-04T15:30:57,010 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-06-04T15:30:57,013 creating build/lib/omicverse/llm/geneformer/mtl 2026-06-04T15:30:57,014 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-04T15:30:57,017 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-04T15:30:57,019 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-04T15:30:57,021 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-04T15:30:57,023 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-04T15:30:57,026 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-04T15:30:57,028 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-04T15:30:57,030 creating build/lib/omicverse/llm/UCE/data_proc 2026-06-04T15:30:57,031 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-04T15:30:57,034 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-04T15:30:57,036 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-04T15:30:57,038 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-04T15:30:57,040 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-04T15:30:57,043 creating build/lib/omicverse/llm/scgpt/utils 2026-06-04T15:30:57,044 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-06-04T15:30:57,046 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-06-04T15:30:57,049 creating build/lib/omicverse/llm/scgpt/scbank 2026-06-04T15:30:57,050 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-04T15:30:57,052 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-04T15:30:57,054 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-04T15:30:57,056 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-04T15:30:57,058 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-04T15:30:57,060 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-06-04T15:30:57,061 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-04T15:30:57,063 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-04T15:30:57,066 creating build/lib/omicverse/llm/scgpt/model 2026-06-04T15:30:57,067 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-06-04T15:30:57,068 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-06-04T15:30:57,070 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-06-04T15:30:57,073 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-06-04T15:30:57,076 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-06-04T15:30:57,078 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-06-04T15:30:57,081 creating build/lib/omicverse/llm/scgpt/tasks 2026-06-04T15:30:57,082 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-06-04T15:30:57,084 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-06-04T15:30:57,086 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-06-04T15:30:57,089 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:30:57,090 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:30:57,091 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:30:57,093 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:30:57,095 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:30:57,098 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:30:57,100 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:30:57,102 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:30:57,105 creating build/lib/omicverse/llm/CellPLM/decoder 2026-06-04T15:30:57,106 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-06-04T15:30:57,108 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-06-04T15:30:57,110 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-06-04T15:30:57,112 creating build/lib/omicverse/llm/CellPLM/utils 2026-06-04T15:30:57,113 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-04T15:30:57,116 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-04T15:30:57,118 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-04T15:30:57,120 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-04T15:30:57,122 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-04T15:30:57,124 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-04T15:30:57,126 creating build/lib/omicverse/llm/CellPLM/head 2026-06-04T15:30:57,127 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-06-04T15:30:57,129 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-06-04T15:30:57,132 creating build/lib/omicverse/llm/CellPLM/layer 2026-06-04T15:30:57,133 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-04T15:30:57,135 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-04T15:30:57,137 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-04T15:30:57,140 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-04T15:30:57,142 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-04T15:30:57,144 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-06-04T15:30:57,145 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-04T15:30:57,148 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-04T15:30:57,150 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-04T15:30:57,152 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-04T15:30:57,154 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-04T15:30:57,157 creating build/lib/omicverse/llm/CellPLM/encoder 2026-06-04T15:30:57,158 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-06-04T15:30:57,160 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-06-04T15:30:57,162 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-06-04T15:30:57,164 creating build/lib/omicverse/llm/CellPLM/objective 2026-06-04T15:30:57,165 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-06-04T15:30:57,168 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-06-04T15:30:57,170 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-06-04T15:30:57,172 creating build/lib/omicverse/llm/CellPLM/model 2026-06-04T15:30:57,173 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-06-04T15:30:57,176 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-06-04T15:30:57,178 creating build/lib/omicverse/llm/CellPLM/embedder 2026-06-04T15:30:57,179 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-06-04T15:30:57,181 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-06-04T15:30:57,183 creating build/lib/omicverse/llm/CellPLM/latent 2026-06-04T15:30:57,184 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-04T15:30:57,186 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-04T15:30:57,188 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-04T15:30:57,190 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-04T15:30:57,192 creating build/lib/omicverse/llm/domain_research/write 2026-06-04T15:30:57,193 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-06-04T15:30:57,195 creating build/lib/omicverse/llm/domain_research/retrievers 2026-06-04T15:30:57,196 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-06-04T15:30:57,198 creating build/lib/omicverse/pp/experimental 2026-06-04T15:30:57,199 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-06-04T15:30:57,202 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-06-04T15:30:57,204 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-06-04T15:30:57,206 creating build/lib/omicverse/pp/_scrublet_backend 2026-06-04T15:30:57,207 copying omicverse/pp/_scrublet_backend/scrublet.py -> build/lib/omicverse/pp/_scrublet_backend 2026-06-04T15:30:57,210 copying omicverse/pp/_scrublet_backend/helper_functions.py -> build/lib/omicverse/pp/_scrublet_backend 2026-06-04T15:30:57,212 copying omicverse/pp/_scrublet_backend/__init__.py -> build/lib/omicverse/pp/_scrublet_backend 2026-06-04T15:30:57,214 creating build/lib/omicverse/pp/ambient 2026-06-04T15:30:57,215 copying omicverse/pp/ambient/_diagnostics.py -> build/lib/omicverse/pp/ambient 2026-06-04T15:30:57,218 copying omicverse/pp/ambient/_plotting.py -> build/lib/omicverse/pp/ambient 2026-06-04T15:30:57,220 copying omicverse/pp/ambient/__init__.py -> build/lib/omicverse/pp/ambient 2026-06-04T15:30:57,222 copying omicverse/pp/ambient/_ambient.py -> build/lib/omicverse/pp/ambient 2026-06-04T15:30:57,225 creating build/lib/omicverse/external/GNTD 2026-06-04T15:30:57,226 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-06-04T15:30:57,228 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-06-04T15:30:57,229 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-06-04T15:30:57,232 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-06-04T15:30:57,235 creating build/lib/omicverse/external/GraphST 2026-06-04T15:30:57,236 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-06-04T15:30:57,238 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-06-04T15:30:57,240 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-06-04T15:30:57,243 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-06-04T15:30:57,244 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-06-04T15:30:57,247 creating build/lib/omicverse/external/PROST 2026-06-04T15:30:57,248 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-06-04T15:30:57,251 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-06-04T15:30:57,254 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-06-04T15:30:57,256 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-06-04T15:30:57,259 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-06-04T15:30:57,260 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-06-04T15:30:57,262 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-06-04T15:30:57,265 creating build/lib/omicverse/external/cnmf 2026-06-04T15:30:57,266 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-06-04T15:30:57,269 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-06-04T15:30:57,273 creating build/lib/omicverse/external/istar 2026-06-04T15:30:57,274 copying omicverse/external/istar/aggregate_imputed.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,276 copying omicverse/external/istar/visual.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,278 copying omicverse/external/istar/vision_transformer4k.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,280 copying omicverse/external/istar/get_mask.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,282 copying omicverse/external/istar/image.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,284 copying omicverse/external/istar/hipt_model_utils.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,286 copying omicverse/external/istar/utils.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,288 copying omicverse/external/istar/plot_spots.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,290 copying omicverse/external/istar/vision_transformer.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,293 copying omicverse/external/istar/pixannot.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,295 copying omicverse/external/istar/connected_components.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,297 copying omicverse/external/istar/marker_score.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,299 copying omicverse/external/istar/cluster.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,301 copying omicverse/external/istar/extract_features.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,304 copying omicverse/external/istar/hipt_heatmap_utils.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,306 copying omicverse/external/istar/impute_by_basic.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,309 copying omicverse/external/istar/differential.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,311 copying omicverse/external/istar/select_genes.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,313 copying omicverse/external/istar/enrich.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,314 copying omicverse/external/istar/hipt_4k.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,317 copying omicverse/external/istar/reduce_dim.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,319 copying omicverse/external/istar/rescale.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,321 copying omicverse/external/istar/train.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,323 copying omicverse/external/istar/impute.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,325 copying omicverse/external/istar/structural_similarity.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,328 copying omicverse/external/istar/__init__.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,329 copying omicverse/external/istar/plot_imputed.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,331 copying omicverse/external/istar/preprocess.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,333 copying omicverse/external/istar/reorganize_imputed.py -> build/lib/omicverse/external/istar 2026-06-04T15:30:57,336 creating build/lib/omicverse/external/starfysh 2026-06-04T15:30:57,337 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-06-04T15:30:57,339 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-06-04T15:30:57,342 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-06-04T15:30:57,345 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-06-04T15:30:57,348 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-06-04T15:30:57,351 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-06-04T15:30:57,353 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-06-04T15:30:57,355 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-06-04T15:30:57,357 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-06-04T15:30:57,360 creating build/lib/omicverse/external/popv 2026-06-04T15:30:57,361 copying omicverse/external/popv/_utils.py -> build/lib/omicverse/external/popv 2026-06-04T15:30:57,363 copying omicverse/external/popv/annotation.py -> build/lib/omicverse/external/popv 2026-06-04T15:30:57,366 copying omicverse/external/popv/preprocessing.py -> build/lib/omicverse/external/popv 2026-06-04T15:30:57,368 copying omicverse/external/popv/_settings.py -> build/lib/omicverse/external/popv 2026-06-04T15:30:57,370 copying omicverse/external/popv/visualization.py -> build/lib/omicverse/external/popv 2026-06-04T15:30:57,372 copying omicverse/external/popv/__init__.py -> build/lib/omicverse/external/popv 2026-06-04T15:30:57,375 creating build/lib/omicverse/external/bin2cell 2026-06-04T15:30:57,376 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-06-04T15:30:57,378 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-06-04T15:30:57,383 creating build/lib/omicverse/external/pyedger 2026-06-04T15:30:57,384 copying omicverse/external/pyedger/__init__.py -> build/lib/omicverse/external/pyedger 2026-06-04T15:30:57,386 copying omicverse/external/pyedger/core.py -> build/lib/omicverse/external/pyedger 2026-06-04T15:30:57,390 creating build/lib/omicverse/external/forcedirect2 2026-06-04T15:30:57,391 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-06-04T15:30:57,394 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-06-04T15:30:57,396 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-06-04T15:30:57,398 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-06-04T15:30:57,401 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-06-04T15:30:57,402 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-06-04T15:30:57,405 creating build/lib/omicverse/external/MetaQ 2026-06-04T15:30:57,406 copying omicverse/external/MetaQ/data_utils.py -> build/lib/omicverse/external/MetaQ 2026-06-04T15:30:57,409 copying omicverse/external/MetaQ/engine.py -> build/lib/omicverse/external/MetaQ 2026-06-04T15:30:57,411 copying omicverse/external/MetaQ/model.py -> build/lib/omicverse/external/MetaQ 2026-06-04T15:30:57,413 copying omicverse/external/MetaQ/__init__.py -> build/lib/omicverse/external/MetaQ 2026-06-04T15:30:57,416 creating build/lib/omicverse/external/harmony 2026-06-04T15:30:57,417 copying omicverse/external/harmony/_harmony_cpu.py -> build/lib/omicverse/external/harmony 2026-06-04T15:30:57,419 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-06-04T15:30:57,422 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-06-04T15:30:57,424 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-06-04T15:30:57,426 copying omicverse/external/harmony/_harmony_mlx.py -> build/lib/omicverse/external/harmony 2026-06-04T15:30:57,429 creating build/lib/omicverse/external/py_scmetabolism 2026-06-04T15:30:57,430 copying omicverse/external/py_scmetabolism/compute.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-04T15:30:57,432 copying omicverse/external/py_scmetabolism/methods.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-04T15:30:57,435 copying omicverse/external/py_scmetabolism/visualize.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-04T15:30:57,437 copying omicverse/external/py_scmetabolism/__init__.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-04T15:30:57,439 creating build/lib/omicverse/external/SpatialDE 2026-06-04T15:30:57,440 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-06-04T15:30:57,442 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-06-04T15:30:57,444 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-06-04T15:30:57,447 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-06-04T15:30:57,449 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-06-04T15:30:57,451 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-06-04T15:30:57,453 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-06-04T15:30:57,455 creating build/lib/omicverse/external/umap_pytorch 2026-06-04T15:30:57,457 copying omicverse/external/umap_pytorch/fuzzy_gpu.py -> build/lib/omicverse/external/umap_pytorch 2026-06-04T15:30:57,459 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-06-04T15:30:57,461 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-06-04T15:30:57,464 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-06-04T15:30:57,465 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-06-04T15:30:57,467 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-06-04T15:30:57,471 creating build/lib/omicverse/external/nocd 2026-06-04T15:30:57,472 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-06-04T15:30:57,474 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-06-04T15:30:57,476 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-06-04T15:30:57,478 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-06-04T15:30:57,480 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-06-04T15:30:57,482 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-06-04T15:30:57,484 creating build/lib/omicverse/external/supercell 2026-06-04T15:30:57,485 copying omicverse/external/supercell/supercell.py -> build/lib/omicverse/external/supercell 2026-06-04T15:30:57,487 copying omicverse/external/supercell/__init__.py -> build/lib/omicverse/external/supercell 2026-06-04T15:30:57,490 creating build/lib/omicverse/external/STT 2026-06-04T15:30:57,491 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-06-04T15:30:57,493 creating build/lib/omicverse/external/PyWGCNA 2026-06-04T15:30:57,494 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-06-04T15:30:57,497 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-06-04T15:30:57,504 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-06-04T15:30:57,507 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-06-04T15:30:57,509 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-06-04T15:30:57,511 creating build/lib/omicverse/external/spaco 2026-06-04T15:30:57,512 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-06-04T15:30:57,515 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-06-04T15:30:57,517 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-06-04T15:30:57,519 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-06-04T15:30:57,521 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-06-04T15:30:57,524 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-06-04T15:30:57,525 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-06-04T15:30:57,528 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-06-04T15:30:57,530 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-06-04T15:30:57,532 creating build/lib/omicverse/external/CEFCON 2026-06-04T15:30:57,533 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-06-04T15:30:57,535 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-06-04T15:30:57,538 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-06-04T15:30:57,540 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-06-04T15:30:57,542 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-06-04T15:30:57,545 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-06-04T15:30:57,547 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-06-04T15:30:57,549 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-06-04T15:30:57,552 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-06-04T15:30:57,555 creating build/lib/omicverse/external/mofapy2 2026-06-04T15:30:57,556 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-06-04T15:30:57,558 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-06-04T15:30:57,560 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-06-04T15:30:57,562 creating build/lib/omicverse/external/cytotrace2 2026-06-04T15:30:57,563 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-06-04T15:30:57,565 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-06-04T15:30:57,567 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-06-04T15:30:57,570 creating build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,571 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,573 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,575 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,578 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,581 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,583 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,586 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,589 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,591 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,593 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-06-04T15:30:57,597 creating build/lib/omicverse/external/spaceflow 2026-06-04T15:30:57,598 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-06-04T15:30:57,600 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-06-04T15:30:57,601 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-06-04T15:30:57,604 creating build/lib/omicverse/external/BINARY 2026-06-04T15:30:57,605 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-06-04T15:30:57,608 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-06-04T15:30:57,610 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-06-04T15:30:57,612 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-06-04T15:30:57,615 creating build/lib/omicverse/external/gaston 2026-06-04T15:30:57,616 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,618 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,620 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,621 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,624 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,626 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,628 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,630 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,632 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,634 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,636 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,638 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,640 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,642 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,645 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,647 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-06-04T15:30:57,649 creating build/lib/omicverse/external/VIA 2026-06-04T15:30:57,650 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-06-04T15:30:57,653 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-06-04T15:30:57,659 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-06-04T15:30:57,667 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-06-04T15:30:57,669 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-06-04T15:30:57,673 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-06-04T15:30:57,675 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-06-04T15:30:57,681 creating build/lib/omicverse/external/NaiveDE 2026-06-04T15:30:57,682 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-06-04T15:30:57,685 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-06-04T15:30:57,686 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-06-04T15:30:57,688 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-06-04T15:30:57,690 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-06-04T15:30:57,692 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-06-04T15:30:57,694 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-06-04T15:30:57,696 creating build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,697 copying omicverse/external/gsmap/_style.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,699 copying omicverse/external/gsmap/find_latent_representation.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,701 copying omicverse/external/gsmap/_regression_read.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,703 copying omicverse/external/gsmap/generate_ldscore.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,705 copying omicverse/external/gsmap/cauchy_combination.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,707 copying omicverse/external/gsmap/report.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,709 copying omicverse/external/gsmap/spatial_ldsc.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,711 copying omicverse/external/gsmap/_visualize.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,714 copying omicverse/external/gsmap/_jackknife.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,716 copying omicverse/external/gsmap/diagnosis.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,718 copying omicverse/external/gsmap/__init__.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,720 copying omicverse/external/gsmap/_manhattan_plot.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,722 copying omicverse/external/gsmap/latent_to_gene.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,724 copying omicverse/external/gsmap/_config.py -> build/lib/omicverse/external/gsmap 2026-06-04T15:30:57,727 creating build/lib/omicverse/external/mpl_chord 2026-06-04T15:30:57,728 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-06-04T15:30:57,730 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-06-04T15:30:57,733 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-06-04T15:30:57,736 creating build/lib/omicverse/external/datacollect 2026-06-04T15:30:57,737 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-06-04T15:30:57,740 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-06-04T15:30:57,742 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-06-04T15:30:57,745 creating build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,746 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,749 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,751 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,754 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,756 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,758 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,761 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,763 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,765 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,767 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,769 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-06-04T15:30:57,772 creating build/lib/omicverse/external/mcRigor 2026-06-04T15:30:57,773 copying omicverse/external/mcRigor/rigor.py -> build/lib/omicverse/external/mcRigor 2026-06-04T15:30:57,775 copying omicverse/external/mcRigor/__init__.py -> build/lib/omicverse/external/mcRigor 2026-06-04T15:30:57,778 creating build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,779 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,781 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,783 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,785 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,788 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,790 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,792 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,794 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,797 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,799 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,801 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,803 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,805 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,807 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,810 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-06-04T15:30:57,812 creating build/lib/omicverse/external/topact 2026-06-04T15:30:57,813 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-06-04T15:30:57,817 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-06-04T15:30:57,818 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-06-04T15:30:57,821 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-06-04T15:30:57,823 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-06-04T15:30:57,824 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-06-04T15:30:57,826 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-06-04T15:30:57,828 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-06-04T15:30:57,832 creating build/lib/omicverse/external/STAligner 2026-06-04T15:30:57,833 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-06-04T15:30:57,835 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-06-04T15:30:57,838 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-06-04T15:30:57,840 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-06-04T15:30:57,842 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-06-04T15:30:57,845 creating build/lib/omicverse/external/commot 2026-06-04T15:30:57,845 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-06-04T15:30:57,848 creating build/lib/omicverse/external/ctxcore 2026-06-04T15:30:57,849 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-06-04T15:30:57,851 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-06-04T15:30:57,853 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-06-04T15:30:57,856 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-06-04T15:30:57,859 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-06-04T15:30:57,861 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-06-04T15:30:57,862 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-06-04T15:30:57,864 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-06-04T15:30:57,868 creating build/lib/omicverse/external/torch_pca 2026-06-04T15:30:57,869 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-06-04T15:30:57,871 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-06-04T15:30:57,873 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-06-04T15:30:57,875 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-06-04T15:30:57,877 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-06-04T15:30:57,879 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-06-04T15:30:57,882 creating build/lib/omicverse/external/tape 2026-06-04T15:30:57,883 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-06-04T15:30:57,885 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-06-04T15:30:57,887 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-06-04T15:30:57,889 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-06-04T15:30:57,892 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-06-04T15:30:57,894 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-06-04T15:30:57,897 creating build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,898 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,900 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,903 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,905 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,907 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,909 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,911 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,913 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,916 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,918 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,920 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,922 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,924 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,926 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,928 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,930 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,932 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,934 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,936 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,938 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,939 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-04T15:30:57,942 creating build/lib/omicverse/external/tosica 2026-06-04T15:30:57,943 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-06-04T15:30:57,945 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-06-04T15:30:57,947 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-06-04T15:30:57,950 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-06-04T15:30:57,952 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-06-04T15:30:57,955 creating build/lib/omicverse/external/palantir 2026-06-04T15:30:57,956 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,959 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,961 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,963 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,966 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,968 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,970 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,972 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,974 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,977 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,979 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-06-04T15:30:57,984 creating build/lib/omicverse/external/scfea 2026-06-04T15:30:57,985 copying omicverse/external/scfea/util.py -> build/lib/omicverse/external/scfea 2026-06-04T15:30:57,987 copying omicverse/external/scfea/scFEA.py -> build/lib/omicverse/external/scfea 2026-06-04T15:30:57,989 copying omicverse/external/scfea/DatasetFlux.py -> build/lib/omicverse/external/scfea 2026-06-04T15:30:57,991 copying omicverse/external/scfea/ClassFlux.py -> build/lib/omicverse/external/scfea 2026-06-04T15:30:57,993 copying omicverse/external/scfea/__init__.py -> build/lib/omicverse/external/scfea 2026-06-04T15:30:57,995 creating build/lib/omicverse/external/scanorama 2026-06-04T15:30:57,997 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-06-04T15:30:57,999 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-06-04T15:30:58,003 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-06-04T15:30:58,005 creating build/lib/omicverse/external/geosketch 2026-06-04T15:30:58,006 copying omicverse/external/geosketch/utils.py -> build/lib/omicverse/external/geosketch 2026-06-04T15:30:58,008 copying omicverse/external/geosketch/sketch.py -> build/lib/omicverse/external/geosketch 2026-06-04T15:30:58,010 copying omicverse/external/geosketch/kmeanspp.py -> build/lib/omicverse/external/geosketch 2026-06-04T15:30:58,012 copying omicverse/external/geosketch/__init__.py -> build/lib/omicverse/external/geosketch 2026-06-04T15:30:58,015 creating build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,015 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,018 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,020 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,022 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,024 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,027 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,029 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,032 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,034 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,036 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,038 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,040 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-06-04T15:30:58,043 creating build/lib/omicverse/external/scdiffusion 2026-06-04T15:30:58,044 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-06-04T15:30:58,047 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-06-04T15:30:58,049 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-06-04T15:30:58,051 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-06-04T15:30:58,054 creating build/lib/omicverse/external/mebocost 2026-06-04T15:30:58,055 copying omicverse/external/mebocost/mebocost.py -> build/lib/omicverse/external/mebocost 2026-06-04T15:30:58,059 copying omicverse/external/mebocost/fba_handler.py -> build/lib/omicverse/external/mebocost 2026-06-04T15:30:58,061 copying omicverse/external/mebocost/crosstalk_plots.py -> build/lib/omicverse/external/mebocost 2026-06-04T15:30:58,064 copying omicverse/external/mebocost/crosstalk_diff.py -> build/lib/omicverse/external/mebocost 2026-06-04T15:30:58,067 copying omicverse/external/mebocost/MetEstimator.py -> build/lib/omicverse/external/mebocost 2026-06-04T15:30:58,070 copying omicverse/external/mebocost/crosstalk_calculator.py -> build/lib/omicverse/external/mebocost 2026-06-04T15:30:58,072 copying omicverse/external/mebocost/__init__.py -> build/lib/omicverse/external/mebocost 2026-06-04T15:30:58,075 creating build/lib/omicverse/external/gtfparse 2026-06-04T15:30:58,076 copying omicverse/external/gtfparse/parsing_error.py -> build/lib/omicverse/external/gtfparse 2026-06-04T15:30:58,078 copying omicverse/external/gtfparse/attribute_parsing.py -> build/lib/omicverse/external/gtfparse 2026-06-04T15:30:58,081 copying omicverse/external/gtfparse/create_missing_features.py -> build/lib/omicverse/external/gtfparse 2026-06-04T15:30:58,083 copying omicverse/external/gtfparse/read_gtf.py -> build/lib/omicverse/external/gtfparse 2026-06-04T15:30:58,085 copying omicverse/external/gtfparse/__init__.py -> build/lib/omicverse/external/gtfparse 2026-06-04T15:30:58,088 creating build/lib/omicverse/external/CAST 2026-06-04T15:30:58,089 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-06-04T15:30:58,091 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-06-04T15:30:58,094 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-06-04T15:30:58,097 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-06-04T15:30:58,099 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-06-04T15:30:58,101 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-06-04T15:30:58,103 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-06-04T15:30:58,106 creating build/lib/omicverse/external/STAGATE_pyG 2026-06-04T15:30:58,107 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-04T15:30:58,110 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-04T15:30:58,112 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-04T15:30:58,114 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-04T15:30:58,116 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-04T15:30:58,119 creating build/lib/omicverse/external/spatrio 2026-06-04T15:30:58,120 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-06-04T15:30:58,122 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-06-04T15:30:58,124 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-06-04T15:30:58,127 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-06-04T15:30:58,129 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-06-04T15:30:58,131 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-06-04T15:30:58,133 creating build/lib/omicverse/external/cellanova 2026-06-04T15:30:58,134 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-06-04T15:30:58,136 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-06-04T15:30:58,139 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-06-04T15:30:58,141 creating build/lib/omicverse/external/monocle2_py 2026-06-04T15:30:58,142 copying omicverse/external/monocle2_py/dimension_reduction.py -> build/lib/omicverse/external/monocle2_py 2026-06-04T15:30:58,145 copying omicverse/external/monocle2_py/utils.py -> build/lib/omicverse/external/monocle2_py 2026-06-04T15:30:58,147 copying omicverse/external/monocle2_py/ddrtree.py -> build/lib/omicverse/external/monocle2_py 2026-06-04T15:30:58,150 copying omicverse/external/monocle2_py/ordering.py -> build/lib/omicverse/external/monocle2_py 2026-06-04T15:30:58,153 copying omicverse/external/monocle2_py/plotting.py -> build/lib/omicverse/external/monocle2_py 2026-06-04T15:30:58,156 copying omicverse/external/monocle2_py/differential.py -> build/lib/omicverse/external/monocle2_py 2026-06-04T15:30:58,159 copying omicverse/external/monocle2_py/__init__.py -> build/lib/omicverse/external/monocle2_py 2026-06-04T15:30:58,161 copying omicverse/external/monocle2_py/core.py -> build/lib/omicverse/external/monocle2_py 2026-06-04T15:30:58,163 copying omicverse/external/monocle2_py/clustering.py -> build/lib/omicverse/external/monocle2_py 2026-06-04T15:30:58,166 creating build/lib/omicverse/external/scMulan 2026-06-04T15:30:58,167 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-06-04T15:30:58,169 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-06-04T15:30:58,172 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-06-04T15:30:58,174 creating build/lib/omicverse/external/scSLAT 2026-06-04T15:30:58,175 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-06-04T15:30:58,177 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-06-04T15:30:58,178 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-06-04T15:30:58,181 creating build/lib/omicverse/external/cellcharter 2026-06-04T15:30:58,182 copying omicverse/external/cellcharter/_utils.py -> build/lib/omicverse/external/cellcharter 2026-06-04T15:30:58,184 copying omicverse/external/cellcharter/_aggr.py -> build/lib/omicverse/external/cellcharter 2026-06-04T15:30:58,185 copying omicverse/external/cellcharter/_gmm.py -> build/lib/omicverse/external/cellcharter 2026-06-04T15:30:58,188 copying omicverse/external/cellcharter/__init__.py -> build/lib/omicverse/external/cellcharter 2026-06-04T15:30:58,189 copying omicverse/external/cellcharter/_autok.py -> build/lib/omicverse/external/cellcharter 2026-06-04T15:30:58,191 copying omicverse/external/cellcharter/_graph.py -> build/lib/omicverse/external/cellcharter 2026-06-04T15:30:58,194 creating build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,195 copying omicverse/external/pyensembl/fasta.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,197 copying omicverse/external/pyensembl/search.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,199 copying omicverse/external/pyensembl/serializable.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,201 copying omicverse/external/pyensembl/species.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,204 copying omicverse/external/pyensembl/ensembl_url_templates.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,206 copying omicverse/external/pyensembl/exon.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,208 copying omicverse/external/pyensembl/locus.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,210 copying omicverse/external/pyensembl/gene.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,212 copying omicverse/external/pyensembl/ensembl_release.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,214 copying omicverse/external/pyensembl/reference_name.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,216 copying omicverse/external/pyensembl/genome.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,219 copying omicverse/external/pyensembl/sequence_data.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,221 copying omicverse/external/pyensembl/normalization.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,223 copying omicverse/external/pyensembl/download_cache.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,225 copying omicverse/external/pyensembl/shell.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,227 copying omicverse/external/pyensembl/ensembl_versions.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,229 copying omicverse/external/pyensembl/transcript.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,232 copying omicverse/external/pyensembl/version.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,233 copying omicverse/external/pyensembl/common.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,235 copying omicverse/external/pyensembl/locus_with_genome.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,237 copying omicverse/external/pyensembl/database.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,240 copying omicverse/external/pyensembl/__init__.py -> build/lib/omicverse/external/pyensembl 2026-06-04T15:30:58,242 creating build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,243 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,245 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,247 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,249 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,251 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,253 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,255 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,258 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,260 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,262 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,264 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,266 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,268 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-06-04T15:30:58,271 creating build/lib/omicverse/external/flowsig 2026-06-04T15:30:58,272 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-06-04T15:30:58,274 creating build/lib/omicverse/external/pylimma 2026-06-04T15:30:58,275 copying omicverse/external/pylimma/fit.py -> build/lib/omicverse/external/pylimma 2026-06-04T15:30:58,278 copying omicverse/external/pylimma/__init__.py -> build/lib/omicverse/external/pylimma 2026-06-04T15:30:58,281 creating build/lib/omicverse/external/scTenifold 2026-06-04T15:30:58,282 copying omicverse/external/scTenifold/__init__.py -> build/lib/omicverse/external/scTenifold 2026-06-04T15:30:58,284 copying omicverse/external/scTenifold/__main__.py -> build/lib/omicverse/external/scTenifold 2026-06-04T15:30:58,287 creating build/lib/omicverse/external/graphvelo 2026-06-04T15:30:58,288 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-06-04T15:30:58,290 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-06-04T15:30:58,293 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-06-04T15:30:58,296 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-06-04T15:30:58,298 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-06-04T15:30:58,300 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-06-04T15:30:58,303 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-06-04T15:30:58,307 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-06-04T15:30:58,309 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-06-04T15:30:58,312 creating build/lib/omicverse/external/bulk2single 2026-06-04T15:30:58,313 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-06-04T15:30:58,316 creating build/lib/omicverse/external/somde 2026-06-04T15:30:58,317 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-06-04T15:30:58,320 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-06-04T15:30:58,321 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-06-04T15:30:58,324 creating build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,325 copying omicverse/external/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,327 copying omicverse/external/popv/algorithms/_scanvi.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,330 copying omicverse/external/popv/algorithms/_celltypist.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,332 copying omicverse/external/popv/algorithms/_svm.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,334 copying omicverse/external/popv/algorithms/_bbknn.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,336 copying omicverse/external/popv/algorithms/_xgboost.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,338 copying omicverse/external/popv/algorithms/_harmony.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,341 copying omicverse/external/popv/algorithms/_scanorama.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,343 copying omicverse/external/popv/algorithms/_rf.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,345 copying omicverse/external/popv/algorithms/_scvi.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,347 copying omicverse/external/popv/algorithms/_onclass.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,350 copying omicverse/external/popv/algorithms/__init__.py -> build/lib/omicverse/external/popv/algorithms 2026-06-04T15:30:58,352 creating build/lib/omicverse/external/popv/hub 2026-06-04T15:30:58,353 copying omicverse/external/popv/hub/_get_metrics.py -> build/lib/omicverse/external/popv/hub 2026-06-04T15:30:58,355 copying omicverse/external/popv/hub/_template.py -> build/lib/omicverse/external/popv/hub 2026-06-04T15:30:58,357 copying omicverse/external/popv/hub/_metadata.py -> build/lib/omicverse/external/popv/hub 2026-06-04T15:30:58,359 copying omicverse/external/popv/hub/_model.py -> build/lib/omicverse/external/popv/hub 2026-06-04T15:30:58,362 copying omicverse/external/popv/hub/__init__.py -> build/lib/omicverse/external/popv/hub 2026-06-04T15:30:58,364 creating build/lib/omicverse/external/space/cell2location 2026-06-04T15:30:58,366 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-06-04T15:30:58,369 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-06-04T15:30:58,371 creating build/lib/omicverse/external/space/cell2location/utils 2026-06-04T15:30:58,372 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-06-04T15:30:58,375 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-06-04T15:30:58,377 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-06-04T15:30:58,379 creating build/lib/omicverse/external/space/cell2location/nn 2026-06-04T15:30:58,380 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-06-04T15:30:58,383 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-06-04T15:30:58,385 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-06-04T15:30:58,388 creating build/lib/omicverse/external/space/cell2location/plt 2026-06-04T15:30:58,389 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-04T15:30:58,392 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-04T15:30:58,394 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-04T15:30:58,395 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-04T15:30:58,398 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-04T15:30:58,400 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-04T15:30:58,402 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-04T15:30:58,404 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-04T15:30:58,407 creating build/lib/omicverse/external/space/cell2location/distributions 2026-06-04T15:30:58,408 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-04T15:30:58,411 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-04T15:30:58,413 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-04T15:30:58,415 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-04T15:30:58,417 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-04T15:30:58,420 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-06-04T15:30:58,421 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-06-04T15:30:58,423 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-06-04T15:30:58,426 creating build/lib/omicverse/external/space/cell2location/models 2026-06-04T15:30:58,427 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-04T15:30:58,429 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-04T15:30:58,432 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-04T15:30:58,435 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-04T15:30:58,438 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-04T15:30:58,440 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-04T15:30:58,441 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-04T15:30:58,443 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-04T15:30:58,446 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-04T15:30:58,448 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-04T15:30:58,450 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-04T15:30:58,452 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-04T15:30:58,454 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-04T15:30:58,457 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-04T15:30:58,459 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-06-04T15:30:58,460 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-06-04T15:30:58,463 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-06-04T15:30:58,465 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-06-04T15:30:58,468 creating build/lib/omicverse/external/space/cell2location/models/base 2026-06-04T15:30:58,469 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-04T15:30:58,470 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-04T15:30:58,473 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-04T15:30:58,476 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-04T15:30:58,478 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-04T15:30:58,480 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-04T15:30:58,481 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-04T15:30:58,484 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-04T15:30:58,485 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-04T15:30:58,488 creating build/lib/omicverse/external/nocd/nn 2026-06-04T15:30:58,489 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-06-04T15:30:58,491 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-06-04T15:30:58,493 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-06-04T15:30:58,495 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-06-04T15:30:58,497 creating build/lib/omicverse/external/nocd/metrics 2026-06-04T15:30:58,498 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-06-04T15:30:58,500 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-06-04T15:30:58,502 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-06-04T15:30:58,507 creating build/lib/omicverse/external/STT/tl 2026-06-04T15:30:58,508 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-06-04T15:30:58,510 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-06-04T15:30:58,513 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-06-04T15:30:58,514 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-06-04T15:30:58,516 creating build/lib/omicverse/external/STT/pl 2026-06-04T15:30:58,517 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-06-04T15:30:58,530 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-06-04T15:30:58,532 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-06-04T15:30:58,533 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-06-04T15:30:58,536 creating build/lib/omicverse/external/spaco/external 2026-06-04T15:30:58,537 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-06-04T15:30:58,540 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-06-04T15:30:58,542 creating build/lib/omicverse/external/CEFCON/resources 2026-06-04T15:30:58,543 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-06-04T15:30:58,545 creating build/lib/omicverse/external/mofapy2/core 2026-06-04T15:30:58,546 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-06-04T15:30:58,548 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-06-04T15:30:58,550 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-06-04T15:30:58,553 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-06-04T15:30:58,555 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-06-04T15:30:58,557 creating build/lib/omicverse/external/mofapy2/simulate 2026-06-04T15:30:58,558 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-06-04T15:30:58,561 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-06-04T15:30:58,563 creating build/lib/omicverse/external/mofapy2/run 2026-06-04T15:30:58,564 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-06-04T15:30:58,567 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-06-04T15:30:58,569 creating build/lib/omicverse/external/mofapy2/build_model 2026-06-04T15:30:58,570 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-04T15:30:58,572 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-04T15:30:58,574 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-04T15:30:58,576 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-04T15:30:58,579 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-04T15:30:58,582 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-04T15:30:58,584 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,585 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,588 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,590 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,592 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,594 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,596 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,598 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,600 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,603 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,605 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,608 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,610 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,612 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,615 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,617 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,619 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,621 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,624 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-04T15:30:58,626 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,627 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,629 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,632 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,634 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,636 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,638 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,639 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,642 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,643 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,646 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,648 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-04T15:30:58,652 creating build/lib/omicverse/external/gsmap/gnn 2026-06-04T15:30:58,653 copying omicverse/external/gsmap/gnn/adjacency_matrix.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-04T15:30:58,655 copying omicverse/external/gsmap/gnn/model.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-04T15:30:58,657 copying omicverse/external/gsmap/gnn/train.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-04T15:30:58,659 copying omicverse/external/gsmap/gnn/__init__.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-04T15:30:58,661 creating build/lib/omicverse/external/datacollect/utils 2026-06-04T15:30:58,662 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-06-04T15:30:58,664 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-06-04T15:30:58,667 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-06-04T15:30:58,669 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-06-04T15:30:58,671 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-06-04T15:30:58,673 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-06-04T15:30:58,675 creating build/lib/omicverse/external/datacollect/config 2026-06-04T15:30:58,676 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-06-04T15:30:58,678 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-06-04T15:30:58,681 creating build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,683 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,685 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,687 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,690 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,692 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,695 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,698 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,700 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,703 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,705 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,707 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,710 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,712 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,714 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,717 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,719 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,721 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,723 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,726 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,728 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,731 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,733 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-04T15:30:58,736 creating build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,737 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,739 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,742 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,744 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,746 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,749 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,751 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,754 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,758 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,762 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,765 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,767 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,769 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,772 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,775 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,777 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,780 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,782 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,785 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,788 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,790 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,794 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,798 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,802 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,807 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,810 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,812 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,815 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,819 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,824 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,829 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,834 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,841 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,847 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-06-04T15:30:58,856 creating build/lib/omicverse/external/datacollect/api/expression 2026-06-04T15:30:58,859 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-04T15:30:58,862 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-04T15:30:58,864 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-04T15:30:58,867 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-04T15:30:58,869 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-04T15:30:58,872 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-04T15:30:58,874 creating build/lib/omicverse/external/datacollect/api/genomics 2026-06-04T15:30:58,875 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-04T15:30:58,877 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-04T15:30:58,880 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-04T15:30:58,882 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-04T15:30:58,884 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-04T15:30:58,887 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-04T15:30:58,889 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-04T15:30:58,891 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-04T15:30:58,894 creating build/lib/omicverse/external/datacollect/api/proteins 2026-06-04T15:30:58,895 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-04T15:30:58,898 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-04T15:30:58,900 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-04T15:30:58,902 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-04T15:30:58,905 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-04T15:30:58,907 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-04T15:30:58,909 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-04T15:30:58,911 creating build/lib/omicverse/external/datacollect/api/pathways 2026-06-04T15:30:58,912 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-04T15:30:58,915 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-04T15:30:58,917 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-04T15:30:58,919 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-04T15:30:58,922 creating build/lib/omicverse/external/datacollect/api/specialized 2026-06-04T15:30:58,923 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-04T15:30:58,925 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-04T15:30:58,928 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-04T15:30:58,931 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-04T15:30:58,933 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-04T15:30:58,936 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-04T15:30:58,938 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-04T15:30:58,941 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-04T15:30:58,943 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-04T15:30:58,947 creating build/lib/omicverse/external/commot/tools 2026-06-04T15:30:58,949 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-06-04T15:30:58,955 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-06-04T15:30:58,999 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-06-04T15:30:59,004 creating build/lib/omicverse/external/commot/preprocessing 2026-06-04T15:30:59,006 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-06-04T15:30:59,011 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-06-04T15:30:59,015 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-06-04T15:30:59,021 creating build/lib/omicverse/external/commot/_optimal_transport 2026-06-04T15:30:59,023 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-04T15:30:59,030 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-04T15:30:59,038 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-04T15:30:59,079 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-04T15:30:59,082 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-04T15:30:59,085 creating build/lib/omicverse/external/commot/_utils 2026-06-04T15:30:59,087 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-06-04T15:30:59,090 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-06-04T15:30:59,093 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-06-04T15:30:59,097 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-06-04T15:30:59,101 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-06-04T15:30:59,105 creating build/lib/omicverse/external/commot/plotting 2026-06-04T15:30:59,107 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-06-04T15:30:59,112 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-06-04T15:30:59,117 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-06-04T15:30:59,122 creating build/lib/omicverse/external/latentvelo/tools 2026-06-04T15:30:59,124 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-04T15:30:59,128 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-04T15:30:59,131 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-04T15:30:59,134 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-04T15:30:59,136 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-04T15:30:59,140 creating build/lib/omicverse/external/latentvelo/models 2026-06-04T15:30:59,141 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-06-04T15:30:59,145 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-04T15:30:59,150 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-06-04T15:30:59,152 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-06-04T15:30:59,155 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-04T15:30:59,159 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-04T15:30:59,164 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-06-04T15:30:59,167 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-04T15:30:59,172 creating build/lib/omicverse/external/latentvelo/plotting 2026-06-04T15:30:59,174 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-06-04T15:30:59,177 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-06-04T15:30:59,179 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-06-04T15:30:59,182 creating build/lib/omicverse/external/latentvelo/evaluation 2026-06-04T15:30:59,183 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-06-04T15:30:59,185 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-06-04T15:30:59,187 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-06-04T15:30:59,190 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,191 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,193 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,195 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,197 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,199 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,201 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,203 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,205 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,207 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,210 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,212 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,214 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,216 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,218 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,220 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,222 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,225 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,228 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:30:59,230 creating build/lib/omicverse/external/scdiffusion/VAE 2026-06-04T15:30:59,231 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-06-04T15:30:59,233 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-06-04T15:30:59,236 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-06-04T15:30:59,239 creating build/lib/omicverse/external/CAST/model 2026-06-04T15:30:59,240 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-06-04T15:30:59,242 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-06-04T15:30:59,245 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-06-04T15:30:59,246 creating build/lib/omicverse/external/scMulan/utils 2026-06-04T15:30:59,247 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-06-04T15:30:59,250 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-06-04T15:30:59,252 creating build/lib/omicverse/external/scMulan/model 2026-06-04T15:30:59,253 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-06-04T15:30:59,255 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-06-04T15:30:59,258 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-04T15:30:59,259 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-04T15:30:59,262 creating build/lib/omicverse/external/scSLAT/model 2026-06-04T15:30:59,263 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-06-04T15:30:59,265 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-06-04T15:30:59,267 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-06-04T15:30:59,269 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-06-04T15:30:59,271 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-06-04T15:30:59,273 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-06-04T15:30:59,275 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-06-04T15:30:59,277 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-06-04T15:30:59,280 creating build/lib/omicverse/external/scSLAT/viz 2026-06-04T15:30:59,281 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-06-04T15:30:59,284 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-06-04T15:30:59,285 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-06-04T15:30:59,288 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-06-04T15:30:59,289 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-06-04T15:30:59,291 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-06-04T15:30:59,293 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-06-04T15:30:59,294 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-06-04T15:30:59,296 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-06-04T15:30:59,298 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-06-04T15:30:59,300 creating build/lib/omicverse/external/flowsig/tools 2026-06-04T15:30:59,301 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-06-04T15:30:59,303 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-06-04T15:30:59,306 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-06-04T15:30:59,308 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-06-04T15:30:59,310 creating build/lib/omicverse/external/flowsig/preprocessing 2026-06-04T15:30:59,311 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-04T15:30:59,314 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-04T15:30:59,316 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-04T15:30:59,318 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-04T15:30:59,320 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-04T15:30:59,322 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-04T15:30:59,325 creating build/lib/omicverse/external/flowsig/utilities 2026-06-04T15:30:59,326 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-06-04T15:30:59,328 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-06-04T15:30:59,331 creating build/lib/omicverse/external/flowsig/plotting 2026-06-04T15:30:59,332 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-06-04T15:30:59,335 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-06-04T15:30:59,337 creating build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-04T15:30:59,338 copying omicverse/external/scTenifold/cell_cycle/scoring.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-04T15:30:59,340 copying omicverse/external/scTenifold/cell_cycle/UCell.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-04T15:30:59,342 copying omicverse/external/scTenifold/cell_cycle/__init__.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-04T15:30:59,344 creating build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,345 copying omicverse/external/scTenifold/core/_QC.py -> build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,347 copying omicverse/external/scTenifold/core/_utils.py -> build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,349 copying omicverse/external/scTenifold/core/_norm.py -> build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,351 copying omicverse/external/scTenifold/core/_api.py -> build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,353 copying omicverse/external/scTenifold/core/_types.py -> build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,355 copying omicverse/external/scTenifold/core/_ko.py -> build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,357 copying omicverse/external/scTenifold/core/_decomposition.py -> build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,358 copying omicverse/external/scTenifold/core/__init__.py -> build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,360 copying omicverse/external/scTenifold/core/_networks.py -> build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,363 copying omicverse/external/scTenifold/core/_base.py -> build/lib/omicverse/external/scTenifold/core 2026-06-04T15:30:59,366 creating build/lib/omicverse/external/scTenifold/plotting 2026-06-04T15:30:59,367 copying omicverse/external/scTenifold/plotting/_dim_reduction.py -> build/lib/omicverse/external/scTenifold/plotting 2026-06-04T15:30:59,369 copying omicverse/external/scTenifold/plotting/_plotting.py -> build/lib/omicverse/external/scTenifold/plotting 2026-06-04T15:30:59,371 copying omicverse/external/scTenifold/plotting/__init__.py -> build/lib/omicverse/external/scTenifold/plotting 2026-06-04T15:30:59,374 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,375 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,378 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,380 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,382 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,385 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,387 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,390 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,392 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,395 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,397 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:30:59,400 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,401 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,404 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,406 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,408 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,410 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,412 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,414 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,417 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,419 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,420 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,422 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,425 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:30:59,427 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:30:59,428 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:30:59,430 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:30:59,432 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:30:59,434 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:30:59,436 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:30:59,440 creating build/lib/omicverse/external/single/arboreto 2026-06-04T15:30:59,441 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-06-04T15:30:59,443 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-06-04T15:30:59,445 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-06-04T15:30:59,446 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-06-04T15:30:59,449 creating build/lib/omicverse/io/bulk 2026-06-04T15:30:59,450 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-06-04T15:30:59,452 creating build/lib/omicverse/io/general 2026-06-04T15:30:59,453 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-06-04T15:30:59,456 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-06-04T15:30:59,458 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-06-04T15:30:59,460 creating build/lib/omicverse/io/spatial 2026-06-04T15:30:59,461 copying omicverse/io/spatial/_xenium.py -> build/lib/omicverse/io/spatial 2026-06-04T15:30:59,464 copying omicverse/io/spatial/_atera.py -> build/lib/omicverse/io/spatial 2026-06-04T15:30:59,466 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-06-04T15:30:59,469 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-06-04T15:30:59,471 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-06-04T15:30:59,473 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-06-04T15:30:59,475 creating build/lib/omicverse/io/single 2026-06-04T15:30:59,476 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-06-04T15:30:59,479 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-06-04T15:30:59,481 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-06-04T15:30:59,485 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-06-04T15:30:59,487 creating build/lib/omicverse/jarvis/gateway 2026-06-04T15:30:59,488 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-06-04T15:30:59,490 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-06-04T15:30:59,492 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-06-04T15:30:59,495 creating build/lib/omicverse/jarvis/memory 2026-06-04T15:30:59,495 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-06-04T15:30:59,498 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-06-04T15:30:59,500 creating build/lib/omicverse/jarvis/channels 2026-06-04T15:30:59,501 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-06-04T15:30:59,505 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-06-04T15:30:59,507 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-06-04T15:30:59,510 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-06-04T15:30:59,513 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-06-04T15:30:59,516 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-06-04T15:30:59,517 copying omicverse/jarvis/channels/channel_core.py -> build/lib/omicverse/jarvis/channels 2026-06-04T15:30:59,520 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-06-04T15:30:59,523 creating build/lib/omicverse/jarvis/runtime 2026-06-04T15:30:59,524 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-06-04T15:30:59,526 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-06-04T15:30:59,528 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-06-04T15:30:59,530 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-06-04T15:30:59,531 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-06-04T15:30:59,533 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-06-04T15:30:59,535 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-06-04T15:30:59,537 creating build/lib/omicverse/single/templates 2026-06-04T15:30:59,538 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-06-04T15:30:59,540 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-06-04T15:30:59,542 creating build/lib/omicverse/single/_metacell_backends 2026-06-04T15:30:59,543 copying omicverse/single/_metacell_backends/mc2_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-04T15:30:59,545 copying omicverse/single/_metacell_backends/geosketch_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-04T15:30:59,547 copying omicverse/single/_metacell_backends/supercell_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-04T15:30:59,549 copying omicverse/single/_metacell_backends/kmeans_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-04T15:30:59,551 copying omicverse/single/_metacell_backends/random_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-04T15:30:59,553 copying omicverse/single/_metacell_backends/seacells_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-04T15:30:59,555 copying omicverse/single/_metacell_backends/base.py -> build/lib/omicverse/single/_metacell_backends 2026-06-04T15:30:59,557 copying omicverse/single/_metacell_backends/__init__.py -> build/lib/omicverse/single/_metacell_backends 2026-06-04T15:30:59,559 copying omicverse/single/_metacell_backends/metaq_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-04T15:30:59,562 creating build/lib/omicverse/single/ev 2026-06-04T15:30:59,563 copying omicverse/single/ev/_pseudobulk.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,565 copying omicverse/single/ev/_preprocess.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,567 copying omicverse/single/ev/_annotate.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,570 copying omicverse/single/ev/io.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,573 copying omicverse/single/ev/_coloc.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,575 copying omicverse/single/ev/plotting.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,577 copying omicverse/single/ev/_report.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,579 copying omicverse/single/ev/__init__.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,582 copying omicverse/single/ev/_qc.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,584 copying omicverse/single/ev/_cluster.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,586 copying omicverse/single/ev/_markers.py -> build/lib/omicverse/single/ev 2026-06-04T15:30:59,589 creating build/lib/omicverse/datasets/data_files 2026-06-04T15:30:59,590 copying omicverse/datasets/data_files/smoothDatakNN.py -> build/lib/omicverse/datasets/data_files 2026-06-04T15:30:59,595 running egg_info 2026-06-04T15:30:59,608 writing omicverse.egg-info/PKG-INFO 2026-06-04T15:30:59,643 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-06-04T15:30:59,645 writing entry points to omicverse.egg-info/entry_points.txt 2026-06-04T15:30:59,664 writing requirements to omicverse.egg-info/requires.txt 2026-06-04T15:30:59,666 writing top-level names to omicverse.egg-info/top_level.txt 2026-06-04T15:30:59,887 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-04T15:30:59,969 reading manifest template 'MANIFEST.in' 2026-06-04T15:31:01,174 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-06-04T15:31:02,902 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-06-04T15:31:03,456 warning: no files found matching '*.yml' under directory 'omicverse' 2026-06-04T15:31:08,519 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-06-04T15:31:09,062 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-06-04T15:31:09,630 warning: no files found matching '*.svg' under directory 'omicverse' 2026-06-04T15:31:10,218 warning: no files found matching '*.ico' under directory 'omicverse' 2026-06-04T15:31:10,778 warning: no files found matching '*.db' under directory 'omicverse' 2026-06-04T15:31:11,335 warning: no files found matching '*.npz' under directory 'omicverse' 2026-06-04T15:31:11,892 warning: no files found matching '*.gz' under directory 'omicverse' 2026-06-04T15:31:11,896 no previously-included directories found matching '.git' 2026-06-04T15:31:11,899 no previously-included directories found matching '.github' 2026-06-04T15:31:11,903 no previously-included directories found matching '.claude' 2026-06-04T15:31:11,907 no previously-included directories found matching '.pytest_cache' 2026-06-04T15:31:11,910 no previously-included directories found matching '.ruff_cache' 2026-06-04T15:31:11,914 no previously-included directories found matching '.vscode' 2026-06-04T15:31:11,917 no previously-included directories found matching 'docs' 2026-06-04T15:31:11,921 no previously-included directories found matching 'tests' 2026-06-04T15:31:11,925 no previously-included directories found matching 'OvIntelligence' 2026-06-04T15:31:11,928 no previously-included directories found matching 'READMEM' 2026-06-04T15:31:11,932 no previously-included directories found matching 'omicverse_guide' 2026-06-04T15:31:11,936 no previously-included directories found matching 'omicverse_web' 2026-06-04T15:31:11,940 no previously-included directories found matching 'tmp' 2026-06-04T15:31:11,943 no previously-included directories found matching 'tmp_omicverse' 2026-06-04T15:31:11,947 no previously-included directories found matching 'Skill_Seekers' 2026-06-04T15:31:11,955 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-06-04T15:31:11,965 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-06-04T15:31:11,973 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-06-04T15:31:11,974 adding license file 'LICENSE' 2026-06-04T15:31:12,067 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-04T15:31:12,191 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-06-04T15:31:12,194 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-06-04T15:31:12,196 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-06-04T15:31:12,199 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-06-04T15:31:12,201 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-06-04T15:31:12,204 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-06-04T15:31:12,207 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-06-04T15:31:12,210 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-06-04T15:31:12,216 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-06-04T15:31:12,219 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-06-04T15:31:12,222 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-06-04T15:31:12,224 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-04T15:31:12,245 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-04T15:31:12,263 creating build/lib/omicverse/llm/scfoundation/models 2026-06-04T15:31:12,264 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-06-04T15:31:12,266 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-06-04T15:31:12,268 copying omicverse/external/istar/NOTICE.md -> build/lib/omicverse/external/istar 2026-06-04T15:31:12,270 copying omicverse/external/istar/README.md -> build/lib/omicverse/external/istar 2026-06-04T15:31:12,272 copying omicverse/external/istar/requirements.txt -> build/lib/omicverse/external/istar 2026-06-04T15:31:12,274 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-06-04T15:31:12,276 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-06-04T15:31:12,279 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-06-04T15:31:12,281 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-06-04T15:31:12,283 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-04T15:31:12,286 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-04T15:31:12,289 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-04T15:31:12,291 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-04T15:31:12,294 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-06-04T15:31:12,295 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-06-04T15:31:12,303 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-06-04T15:31:12,310 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-06-04T15:31:12,317 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-04T15:31:12,318 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-04T15:31:12,338 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-04T15:31:12,359 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-04T15:31:12,377 creating build/lib/omicverse/external/gsmap/templates 2026-06-04T15:31:12,378 copying omicverse/external/gsmap/templates/report_template.html -> build/lib/omicverse/external/gsmap/templates 2026-06-04T15:31:12,381 creating build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,382 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,385 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,388 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,390 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,393 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,396 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,399 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,401 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,404 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,406 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,409 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,412 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-06-04T15:31:12,415 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-04T15:31:12,416 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-04T15:31:12,420 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-04T15:31:12,423 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-04T15:31:12,424 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-04T15:31:12,428 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-04T15:31:12,433 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-04T15:31:12,439 creating build/lib/omicverse/external/scfea/data 2026-06-04T15:31:12,440 copying omicverse/external/scfea/data/Human_M168_information.symbols.csv -> build/lib/omicverse/external/scfea/data 2026-06-04T15:31:12,443 copying omicverse/external/scfea/data/cName_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-04T15:31:12,445 copying omicverse/external/scfea/data/cName_complete_mouse_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-04T15:31:12,448 copying omicverse/external/scfea/data/cmMat_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-04T15:31:12,451 copying omicverse/external/scfea/data/cmMat_complete_mouse_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-04T15:31:12,454 copying omicverse/external/scfea/data/module_gene_complete_mouse_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-04T15:31:12,457 copying omicverse/external/scfea/data/module_gene_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-04T15:31:12,460 creating build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-06-04T15:31:12,463 copying omicverse/external/mebocost/data/mebocost_db/human/human_met_sensor_update_Oct21_2025.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-06-04T15:31:12,468 copying omicverse/external/mebocost/data/mebocost_db/human/metabolite_associated_gene_reaction_HMDB_summary.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-06-04T15:31:12,485 creating build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-04T15:31:12,486 copying omicverse/external/mebocost/data/mebocost_db/mouse/metabolite_associated_gene_reaction_HMDB_summary_mouse.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-04T15:31:12,513 copying omicverse/external/mebocost/data/mebocost_db/mouse/mouse_met_sensor_update_Oct21_2025.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-04T15:31:12,518 creating build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-04T15:31:12,519 copying omicverse/external/mebocost/data/mebocost_db/common/hmdb_blood_metabolite_concentration.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-04T15:31:12,522 copying omicverse/external/mebocost/data/mebocost_db/common/human_mouse_homology_gene_pair.csv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-04T15:31:12,529 copying omicverse/external/mebocost/data/mebocost_db/common/metabolite_annotation_HMDB_summary.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-04T15:31:12,552 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-04T15:31:13,002 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-04T15:31:13,028 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:13,033 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-04T15:31:13,034 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-04T15:31:13,122 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-04T15:31:13,127 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-04T15:31:13,133 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-06-04T15:31:13,137 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-06-04T15:31:13,139 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-06-04T15:31:13,141 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-06-04T15:31:13,144 creating build/lib/omicverse/single/templates/img 2026-06-04T15:31:13,145 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-06-04T15:31:13,147 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-06-04T15:31:13,151 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-06-04T15:31:13,154 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-06-04T15:31:13,157 copying omicverse/datasets/data_files/README.md -> build/lib/omicverse/datasets/data_files 2026-06-04T15:31:13,159 copying omicverse/datasets/data_files/features_model_training_17.csv -> build/lib/omicverse/datasets/data_files 2026-06-04T15:31:13,164 copying omicverse/datasets/data_files/human_alias_list.txt -> build/lib/omicverse/datasets/data_files 2026-06-04T15:31:13,167 copying omicverse/datasets/data_files/mart_export.txt -> build/lib/omicverse/datasets/data_files 2026-06-04T15:31:13,237 creating build/lib/omicverse/datasets/data_files/TF 2026-06-04T15:31:13,238 copying omicverse/datasets/data_files/TF/allTFs_human.txt -> build/lib/omicverse/datasets/data_files/TF 2026-06-04T15:31:13,241 copying omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/datasets/data_files/TF 2026-06-04T15:31:13,244 copying omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/datasets/data_files/TF 2026-06-04T15:31:13,254 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/datasets/data_files/TF 2026-06-04T15:31:13,267 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/datasets/data_files/TF 2026-06-04T15:31:13,405 installing to build/bdist.linux-armv7l/wheel 2026-06-04T15:31:13,406 running install 2026-06-04T15:31:13,430 running install_lib 2026-06-04T15:31:13,436 creating build/bdist.linux-armv7l/wheel 2026-06-04T15:31:13,438 creating build/bdist.linux-armv7l/wheel/omicverse 2026-06-04T15:31:13,440 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-06-04T15:31:13,442 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,444 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,446 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,449 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,453 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-06-04T15:31:13,454 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-06-04T15:31:13,457 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,460 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,464 copying build/lib/omicverse/bulk/_wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,466 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,469 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,481 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,483 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,486 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-04T15:31:13,489 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-06-04T15:31:13,491 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-06-04T15:31:13,493 copying build/lib/omicverse/utils/ovagent/repair_loop.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,495 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,498 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,500 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,502 copying build/lib/omicverse/utils/ovagent/session_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,505 copying build/lib/omicverse/utils/ovagent/analysis_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,507 copying build/lib/omicverse/utils/ovagent/turn_artifacts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,510 copying build/lib/omicverse/utils/ovagent/tool_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,512 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,515 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,517 copying build/lib/omicverse/utils/ovagent/analysis_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,520 copying build/lib/omicverse/utils/ovagent/permission_policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,522 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,524 copying build/lib/omicverse/utils/ovagent/analysis_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,527 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,530 copying build/lib/omicverse/utils/ovagent/context_budget.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,533 copying build/lib/omicverse/utils/ovagent/prompt_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,535 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,537 copying build/lib/omicverse/utils/ovagent/codegen_tool_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,539 copying build/lib/omicverse/utils/ovagent/tool_runtime_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,541 copying build/lib/omicverse/utils/ovagent/tool_runtime_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,544 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,546 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,549 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,551 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,554 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,556 copying build/lib/omicverse/utils/ovagent/turn_followup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,559 copying build/lib/omicverse/utils/ovagent/tool_runtime_workspace.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,561 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,564 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,566 copying build/lib/omicverse/utils/ovagent/tool_scheduler.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,568 copying build/lib/omicverse/utils/ovagent/event_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,571 copying build/lib/omicverse/utils/ovagent/tool_runtime_exec.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-04T15:31:13,574 creating build/bdist.linux-armv7l/wheel/omicverse/utils/biocontext 2026-06-04T15:31:13,575 copying build/lib/omicverse/utils/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-06-04T15:31:13,578 copying build/lib/omicverse/utils/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-06-04T15:31:13,580 copying build/lib/omicverse/utils/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-06-04T15:31:13,582 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,584 copying build/lib/omicverse/utils/agent_backend_dashscope.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,586 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,588 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,590 copying build/lib/omicverse/utils/_metabolights.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,592 copying build/lib/omicverse/utils/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,594 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,596 copying build/lib/omicverse/utils/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,598 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,600 copying build/lib/omicverse/utils/agent_backend_openai.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,603 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,606 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,608 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,611 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,614 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,615 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,618 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,620 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,623 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-06-04T15:31:13,624 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,627 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,629 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,632 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,634 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,637 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,639 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,642 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,644 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,647 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,649 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,652 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,654 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-04T15:31:13,657 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-06-04T15:31:13,658 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-04T15:31:13,660 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-04T15:31:13,665 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-04T15:31:13,667 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-04T15:31:13,669 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-04T15:31:13,672 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-04T15:31:13,674 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-04T15:31:13,675 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-04T15:31:13,678 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-04T15:31:13,680 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-04T15:31:13,682 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,684 copying build/lib/omicverse/utils/agent_backend_common.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,687 copying build/lib/omicverse/utils/agent_backend_streaming.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,689 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,692 copying build/lib/omicverse/utils/_memory.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,693 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,695 copying build/lib/omicverse/utils/_ovagent_lookup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,697 copying build/lib/omicverse/utils/_gene_id_conversion.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,700 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,702 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,705 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-06-04T15:31:13,706 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-04T15:31:13,708 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-04T15:31:13,711 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-04T15:31:13,714 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-04T15:31:13,716 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-04T15:31:13,718 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-04T15:31:13,720 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-04T15:31:13,722 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,724 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,726 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,728 copying build/lib/omicverse/utils/agent_backend_anthropic.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,730 copying build/lib/omicverse/utils/_sample_metadata_alignment.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,733 copying build/lib/omicverse/utils/agent_backend_gemini.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,735 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,738 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,740 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,743 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,747 creating build/bdist.linux-armv7l/wheel/omicverse/utils/gpuex 2026-06-04T15:31:13,749 creating build/bdist.linux-armv7l/wheel/omicverse/utils/gpuex/umap 2026-06-04T15:31:13,750 copying build/lib/omicverse/utils/gpuex/umap/_sgd_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-04T15:31:13,753 copying build/lib/omicverse/utils/gpuex/umap/_ab.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-04T15:31:13,755 copying build/lib/omicverse/utils/gpuex/umap/_sgd.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-04T15:31:13,757 copying build/lib/omicverse/utils/gpuex/umap/_init.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-04T15:31:13,759 copying build/lib/omicverse/utils/gpuex/umap/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-04T15:31:13,761 copying build/lib/omicverse/utils/gpuex/umap/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-04T15:31:13,763 copying build/lib/omicverse/utils/gpuex/scipy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex 2026-06-04T15:31:13,765 copying build/lib/omicverse/utils/gpuex/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex 2026-06-04T15:31:13,767 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,769 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,772 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,774 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,777 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,780 copying build/lib/omicverse/utils/_ovagent_paths.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,782 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,785 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,788 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,790 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-04T15:31:13,792 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-04T15:31:13,794 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-04T15:31:13,798 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-06-04T15:31:13,799 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,802 copying build/lib/omicverse/space/_tissue_zones.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,804 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,807 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,810 copying build/lib/omicverse/space/_cellcharter.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,812 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,814 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,816 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,819 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,820 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,824 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,827 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,829 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,832 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,835 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,837 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-04T15:31:13,840 creating build/bdist.linux-armv7l/wheel/omicverse/space/histo 2026-06-04T15:31:13,841 copying build/lib/omicverse/space/histo/_dispatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-04T15:31:13,844 copying build/lib/omicverse/space/histo/_istar.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-04T15:31:13,847 copying build/lib/omicverse/space/histo/_hest_fm.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-04T15:31:13,849 copying build/lib/omicverse/space/histo/_stflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-04T15:31:13,851 copying build/lib/omicverse/space/histo/_demo.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-04T15:31:13,853 copying build/lib/omicverse/space/histo/_embed.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-04T15:31:13,856 copying build/lib/omicverse/space/histo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-04T15:31:13,858 copying build/lib/omicverse/space/histo/_stpath.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-04T15:31:13,860 copying build/lib/omicverse/space/histo/_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-04T15:31:13,863 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-06-04T15:31:13,864 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,867 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-06-04T15:31:13,868 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-04T15:31:13,870 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-04T15:31:13,873 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-04T15:31:13,875 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-04T15:31:13,877 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-04T15:31:13,879 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,881 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,883 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,885 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,888 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,890 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,893 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,895 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,900 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,902 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,904 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,906 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-04T15:31:13,909 creating build/bdist.linux-armv7l/wheel/omicverse/report 2026-06-04T15:31:13,910 copying build/lib/omicverse/report/_html.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-04T15:31:13,912 copying build/lib/omicverse/report/_plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-04T15:31:13,915 copying build/lib/omicverse/report/_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-04T15:31:13,917 copying build/lib/omicverse/report/_provenance.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-04T15:31:13,919 copying build/lib/omicverse/report/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-04T15:31:13,922 creating build/bdist.linux-armv7l/wheel/omicverse/mol 2026-06-04T15:31:13,923 copying build/lib/omicverse/mol/_dock.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-04T15:31:13,926 copying build/lib/omicverse/mol/_drugs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-04T15:31:13,928 copying build/lib/omicverse/mol/_structure.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-04T15:31:13,931 copying build/lib/omicverse/mol/_check.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-04T15:31:13,933 copying build/lib/omicverse/mol/_pocket.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-04T15:31:13,935 copying build/lib/omicverse/mol/_view.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-04T15:31:13,938 copying build/lib/omicverse/mol/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-04T15:31:13,940 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-06-04T15:31:13,942 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-06-04T15:31:13,944 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-06-04T15:31:13,945 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-04T15:31:13,947 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-04T15:31:13,949 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-04T15:31:13,951 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-04T15:31:13,953 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-04T15:31:13,955 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-04T15:31:13,957 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-04T15:31:13,960 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-04T15:31:13,962 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-06-04T15:31:13,963 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-06-04T15:31:13,965 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-06-04T15:31:13,967 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-06-04T15:31:13,969 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-04T15:31:13,971 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-06-04T15:31:13,972 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-06-04T15:31:13,975 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-06-04T15:31:13,976 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-06-04T15:31:13,979 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-06-04T15:31:13,981 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-06-04T15:31:13,983 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-06-04T15:31:13,984 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-06-04T15:31:13,987 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-06-04T15:31:13,989 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-04T15:31:13,991 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-04T15:31:13,993 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-06-04T15:31:13,995 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-06-04T15:31:13,997 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-06-04T15:31:13,999 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-06-04T15:31:14,001 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,004 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,008 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-06-04T15:31:14,009 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,012 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,015 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,018 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,021 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,023 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,026 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,029 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-06-04T15:31:14,030 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-04T15:31:14,033 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-04T15:31:14,035 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-04T15:31:14,037 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-04T15:31:14,039 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-04T15:31:14,041 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-04T15:31:14,043 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-04T15:31:14,045 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,048 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,051 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,054 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,056 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-04T15:31:14,060 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-06-04T15:31:14,061 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-04T15:31:14,063 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-04T15:31:14,067 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-06-04T15:31:14,068 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-04T15:31:14,070 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-04T15:31:14,073 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-04T15:31:14,075 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-04T15:31:14,078 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-04T15:31:14,080 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-04T15:31:14,083 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-04T15:31:14,085 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-04T15:31:14,087 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-04T15:31:14,089 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,092 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-06-04T15:31:14,093 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-06-04T15:31:14,095 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-06-04T15:31:14,098 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-06-04T15:31:14,100 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-06-04T15:31:14,101 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-04T15:31:14,104 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-04T15:31:14,107 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-04T15:31:14,109 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-04T15:31:14,111 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-04T15:31:14,112 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-04T15:31:14,115 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-06-04T15:31:14,116 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-04T15:31:14,145 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-04T15:31:14,148 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-04T15:31:14,150 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-04T15:31:14,172 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-04T15:31:14,175 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-06-04T15:31:14,177 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-04T15:31:14,178 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-04T15:31:14,180 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-04T15:31:14,183 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-04T15:31:14,186 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-04T15:31:14,188 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-04T15:31:14,191 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-06-04T15:31:14,192 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-06-04T15:31:14,194 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-06-04T15:31:14,197 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-06-04T15:31:14,198 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-04T15:31:14,200 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-04T15:31:14,203 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-04T15:31:14,205 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-04T15:31:14,207 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,213 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-06-04T15:31:14,214 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-04T15:31:14,218 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:31:14,219 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:31:14,222 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:31:14,224 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:31:14,226 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:31:14,229 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:31:14,232 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:31:14,234 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-04T15:31:14,237 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-04T15:31:14,239 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-04T15:31:14,242 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-04T15:31:14,245 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-06-04T15:31:14,246 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-06-04T15:31:14,248 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-04T15:31:14,251 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-04T15:31:14,253 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-04T15:31:14,265 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-04T15:31:14,269 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,274 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,280 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-06-04T15:31:14,282 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-06-04T15:31:14,283 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-06-04T15:31:14,286 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-06-04T15:31:14,289 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-06-04T15:31:14,293 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-06-04T15:31:14,294 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-04T15:31:14,298 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-04T15:31:14,301 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-04T15:31:14,304 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-04T15:31:14,307 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-04T15:31:14,310 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-04T15:31:14,313 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-06-04T15:31:14,314 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-06-04T15:31:14,316 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-06-04T15:31:14,319 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-06-04T15:31:14,321 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-04T15:31:14,324 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-04T15:31:14,326 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-04T15:31:14,329 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-04T15:31:14,332 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-04T15:31:14,334 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-06-04T15:31:14,336 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-04T15:31:14,339 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-04T15:31:14,341 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-04T15:31:14,344 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-04T15:31:14,346 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-04T15:31:14,349 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-06-04T15:31:14,350 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-06-04T15:31:14,353 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-06-04T15:31:14,355 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-06-04T15:31:14,358 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-06-04T15:31:14,359 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-06-04T15:31:14,362 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-06-04T15:31:14,364 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-06-04T15:31:14,367 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-06-04T15:31:14,368 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-06-04T15:31:14,371 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-06-04T15:31:14,373 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-06-04T15:31:14,375 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-06-04T15:31:14,377 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-06-04T15:31:14,379 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-06-04T15:31:14,381 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-06-04T15:31:14,383 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-04T15:31:14,385 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-04T15:31:14,388 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-04T15:31:14,390 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-04T15:31:14,393 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,395 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,399 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,403 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,406 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,409 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-06-04T15:31:14,411 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-06-04T15:31:14,412 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-06-04T15:31:14,415 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-06-04T15:31:14,416 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-06-04T15:31:14,419 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-06-04T15:31:14,421 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-04T15:31:14,423 creating build/bdist.linux-armv7l/wheel/omicverse/genetics 2026-06-04T15:31:14,425 copying build/lib/omicverse/genetics/_gsmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,428 copying build/lib/omicverse/genetics/_finemap.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,431 copying build/lib/omicverse/genetics/_twas.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,434 copying build/lib/omicverse/genetics/_gwas.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,436 copying build/lib/omicverse/genetics/_scdrs.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,439 copying build/lib/omicverse/genetics/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,442 copying build/lib/omicverse/genetics/_mr.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,445 copying build/lib/omicverse/genetics/_simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,448 copying build/lib/omicverse/genetics/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,451 copying build/lib/omicverse/genetics/_eqtl.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,453 copying build/lib/omicverse/genetics/_coloc.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,456 copying build/lib/omicverse/genetics/_ldsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,458 copying build/lib/omicverse/genetics/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,462 copying build/lib/omicverse/genetics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-04T15:31:14,465 creating build/bdist.linux-armv7l/wheel/omicverse/micro 2026-06-04T15:31:14,467 copying build/lib/omicverse/micro/_phylo.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-04T15:31:14,469 copying build/lib/omicverse/micro/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-04T15:31:14,471 copying build/lib/omicverse/micro/_meta.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-04T15:31:14,474 copying build/lib/omicverse/micro/_pair.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-04T15:31:14,477 copying build/lib/omicverse/micro/_ord.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-04T15:31:14,480 copying build/lib/omicverse/micro/_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-04T15:31:14,482 copying build/lib/omicverse/micro/_pp.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-04T15:31:14,485 copying build/lib/omicverse/micro/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-04T15:31:14,487 copying build/lib/omicverse/micro/_da.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-04T15:31:14,491 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-06-04T15:31:14,493 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-06-04T15:31:14,494 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-06-04T15:31:14,498 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-06-04T15:31:14,500 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-06-04T15:31:14,502 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,506 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,509 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,512 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,514 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,518 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,521 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,524 creating build/bdist.linux-armv7l/wheel/omicverse/pp/_scrublet_backend 2026-06-04T15:31:14,525 copying build/lib/omicverse/pp/_scrublet_backend/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-06-04T15:31:14,528 copying build/lib/omicverse/pp/_scrublet_backend/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-06-04T15:31:14,530 copying build/lib/omicverse/pp/_scrublet_backend/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-06-04T15:31:14,532 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,535 copying build/lib/omicverse/pp/_tsne_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,537 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,540 copying build/lib/omicverse/pp/_doubletfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,543 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,545 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,548 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,551 copying build/lib/omicverse/pp/_leiden_gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,553 copying build/lib/omicverse/pp/_gpu_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,556 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,558 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,561 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,563 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,566 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,568 copying build/lib/omicverse/pp/_champ.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,572 creating build/bdist.linux-armv7l/wheel/omicverse/pp/ambient 2026-06-04T15:31:14,573 copying build/lib/omicverse/pp/ambient/_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-04T15:31:14,576 copying build/lib/omicverse/pp/ambient/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-04T15:31:14,578 copying build/lib/omicverse/pp/ambient/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-04T15:31:14,580 copying build/lib/omicverse/pp/ambient/_ambient.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-04T15:31:14,583 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,587 copying build/lib/omicverse/pp/_scdblfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,590 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,592 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,595 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-04T15:31:14,597 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-04T15:31:14,600 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-04T15:31:14,602 creating build/bdist.linux-armv7l/wheel/omicverse/metabol 2026-06-04T15:31:14,604 copying build/lib/omicverse/metabol/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,606 copying build/lib/omicverse/metabol/_lipidomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,609 copying build/lib/omicverse/metabol/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,611 copying build/lib/omicverse/metabol/_multifactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,614 copying build/lib/omicverse/metabol/_mummichog.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,617 copying build/lib/omicverse/metabol/_transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,619 copying build/lib/omicverse/metabol/_correlation.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,622 copying build/lib/omicverse/metabol/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,624 copying build/lib/omicverse/metabol/_msea.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,627 copying build/lib/omicverse/metabol/pymetabo.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,630 copying build/lib/omicverse/metabol/_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,632 copying build/lib/omicverse/metabol/_impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,635 copying build/lib/omicverse/metabol/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,638 copying build/lib/omicverse/metabol/_integration.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,640 copying build/lib/omicverse/metabol/_biomarker.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,643 copying build/lib/omicverse/metabol/_plsda.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,645 copying build/lib/omicverse/metabol/_id_mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,648 copying build/lib/omicverse/metabol/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,650 copying build/lib/omicverse/metabol/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,653 copying build/lib/omicverse/metabol/_fetchers.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,656 copying build/lib/omicverse/metabol/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-04T15:31:14,659 creating build/bdist.linux-armv7l/wheel/omicverse/airr 2026-06-04T15:31:14,660 copying build/lib/omicverse/airr/_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-04T15:31:14,663 copying build/lib/omicverse/airr/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-04T15:31:14,666 copying build/lib/omicverse/airr/_bcr.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-04T15:31:14,669 copying build/lib/omicverse/airr/_tcr_gex.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-04T15:31:14,672 copying build/lib/omicverse/airr/_clonotype.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-04T15:31:14,675 copying build/lib/omicverse/airr/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-04T15:31:14,677 copying build/lib/omicverse/airr/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-04T15:31:14,680 copying build/lib/omicverse/airr/_tcr.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-04T15:31:14,684 copying build/lib/omicverse/airr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-04T15:31:14,686 copying build/lib/omicverse/airr/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-04T15:31:14,689 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-04T15:31:14,692 creating build/bdist.linux-armv7l/wheel/omicverse/protein 2026-06-04T15:31:14,694 copying build/lib/omicverse/protein/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,696 copying build/lib/omicverse/protein/_enrich.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,699 copying build/lib/omicverse/protein/_simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,701 copying build/lib/omicverse/protein/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,704 copying build/lib/omicverse/protein/_impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,706 copying build/lib/omicverse/protein/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,709 copying build/lib/omicverse/protein/_summarize.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,712 copying build/lib/omicverse/protein/_design.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,714 copying build/lib/omicverse/protein/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,716 copying build/lib/omicverse/protein/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,719 copying build/lib/omicverse/protein/_de.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-04T15:31:14,722 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-06-04T15:31:14,723 copying build/lib/omicverse/alignment/dada2.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,726 copying build/lib/omicverse/alignment/_db.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,728 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,731 copying build/lib/omicverse/alignment/vsearch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,734 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,737 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,739 copying build/lib/omicverse/alignment/fasttree.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,741 copying build/lib/omicverse/alignment/amplicon_16s.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,744 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,747 copying build/lib/omicverse/alignment/simpleaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,749 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,752 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,755 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,757 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,759 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,762 copying build/lib/omicverse/alignment/mafft.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,764 copying build/lib/omicverse/alignment/phylogeny.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,766 copying build/lib/omicverse/alignment/cutadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-04T15:31:14,770 creating build/bdist.linux-armv7l/wheel/omicverse/epi 2026-06-04T15:31:14,771 copying build/lib/omicverse/epi/upstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,773 copying build/lib/omicverse/epi/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,775 copying build/lib/omicverse/epi/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,778 copying build/lib/omicverse/epi/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,780 copying build/lib/omicverse/epi/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,782 copying build/lib/omicverse/epi/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,784 copying build/lib/omicverse/epi/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,786 copying build/lib/omicverse/epi/pp.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,789 copying build/lib/omicverse/epi/single.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,791 copying build/lib/omicverse/epi/bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,793 copying build/lib/omicverse/epi/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,795 copying build/lib/omicverse/epi/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-04T15:31:14,798 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-06-04T15:31:14,799 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-04T15:31:14,801 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-04T15:31:14,803 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-04T15:31:14,805 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-04T15:31:14,808 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-04T15:31:14,810 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-04T15:31:14,812 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-04T15:31:14,815 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-04T15:31:14,817 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-04T15:31:14,819 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-04T15:31:14,823 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-06-04T15:31:14,825 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-06-04T15:31:14,827 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-04T15:31:14,829 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-04T15:31:14,831 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-04T15:31:14,834 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-04T15:31:14,837 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-06-04T15:31:14,839 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-04T15:31:14,841 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-04T15:31:14,843 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-04T15:31:14,846 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-04T15:31:14,848 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-04T15:31:14,851 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-04T15:31:14,854 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-06-04T15:31:14,855 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-04T15:31:14,859 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-04T15:31:14,861 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-04T15:31:14,863 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-04T15:31:14,866 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-04T15:31:14,867 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-04T15:31:14,870 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-04T15:31:14,873 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-06-04T15:31:14,874 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-06-04T15:31:14,877 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-06-04T15:31:14,880 creating build/bdist.linux-armv7l/wheel/omicverse/external/istar 2026-06-04T15:31:14,881 copying build/lib/omicverse/external/istar/aggregate_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,883 copying build/lib/omicverse/external/istar/visual.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,886 copying build/lib/omicverse/external/istar/vision_transformer4k.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,888 copying build/lib/omicverse/external/istar/get_mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,890 copying build/lib/omicverse/external/istar/image.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,892 copying build/lib/omicverse/external/istar/hipt_model_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,894 copying build/lib/omicverse/external/istar/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,896 copying build/lib/omicverse/external/istar/plot_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,898 copying build/lib/omicverse/external/istar/vision_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,900 copying build/lib/omicverse/external/istar/pixannot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,902 copying build/lib/omicverse/external/istar/connected_components.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,904 copying build/lib/omicverse/external/istar/marker_score.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,906 copying build/lib/omicverse/external/istar/requirements.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,907 copying build/lib/omicverse/external/istar/cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,910 copying build/lib/omicverse/external/istar/extract_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,912 copying build/lib/omicverse/external/istar/hipt_heatmap_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,915 copying build/lib/omicverse/external/istar/impute_by_basic.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,917 copying build/lib/omicverse/external/istar/differential.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,919 copying build/lib/omicverse/external/istar/select_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,921 copying build/lib/omicverse/external/istar/enrich.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,923 copying build/lib/omicverse/external/istar/hipt_4k.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,925 copying build/lib/omicverse/external/istar/reduce_dim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,926 copying build/lib/omicverse/external/istar/rescale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,928 copying build/lib/omicverse/external/istar/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,930 copying build/lib/omicverse/external/istar/impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,932 copying build/lib/omicverse/external/istar/structural_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,934 copying build/lib/omicverse/external/istar/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,935 copying build/lib/omicverse/external/istar/plot_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,937 copying build/lib/omicverse/external/istar/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,939 copying build/lib/omicverse/external/istar/NOTICE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,941 copying build/lib/omicverse/external/istar/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,942 copying build/lib/omicverse/external/istar/reorganize_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-04T15:31:14,945 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-06-04T15:31:14,946 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-04T15:31:14,949 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-04T15:31:14,951 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-04T15:31:14,954 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-04T15:31:14,956 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-04T15:31:14,959 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-04T15:31:14,962 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-04T15:31:14,964 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-04T15:31:14,966 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-04T15:31:14,969 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv 2026-06-04T15:31:14,970 copying build/lib/omicverse/external/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-04T15:31:14,972 copying build/lib/omicverse/external/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-04T15:31:14,975 copying build/lib/omicverse/external/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-04T15:31:14,978 copying build/lib/omicverse/external/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-04T15:31:14,980 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/algorithms 2026-06-04T15:31:14,981 copying build/lib/omicverse/external/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:14,983 copying build/lib/omicverse/external/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:14,985 copying build/lib/omicverse/external/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:14,988 copying build/lib/omicverse/external/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:14,990 copying build/lib/omicverse/external/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:14,992 copying build/lib/omicverse/external/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:14,994 copying build/lib/omicverse/external/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:14,996 copying build/lib/omicverse/external/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:14,998 copying build/lib/omicverse/external/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:15,000 copying build/lib/omicverse/external/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:15,002 copying build/lib/omicverse/external/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:15,004 copying build/lib/omicverse/external/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-04T15:31:15,006 copying build/lib/omicverse/external/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-04T15:31:15,008 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/hub 2026-06-04T15:31:15,009 copying build/lib/omicverse/external/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-04T15:31:15,011 copying build/lib/omicverse/external/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-04T15:31:15,013 copying build/lib/omicverse/external/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-04T15:31:15,015 copying build/lib/omicverse/external/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-04T15:31:15,018 copying build/lib/omicverse/external/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-04T15:31:15,019 copying build/lib/omicverse/external/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-04T15:31:15,022 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-06-04T15:31:15,023 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-06-04T15:31:15,024 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-06-04T15:31:15,029 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyedger 2026-06-04T15:31:15,030 copying build/lib/omicverse/external/pyedger/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyedger 2026-06-04T15:31:15,032 copying build/lib/omicverse/external/pyedger/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyedger 2026-06-04T15:31:15,036 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-06-04T15:31:15,037 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-06-04T15:31:15,039 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-06-04T15:31:15,040 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-06-04T15:31:15,043 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-06-04T15:31:15,044 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-06-04T15:31:15,047 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-06-04T15:31:15,048 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-06-04T15:31:15,050 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-06-04T15:31:15,052 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-06-04T15:31:15,055 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-06-04T15:31:15,056 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-04T15:31:15,058 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-04T15:31:15,060 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-04T15:31:15,062 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-04T15:31:15,064 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-04T15:31:15,067 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-04T15:31:15,069 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-04T15:31:15,071 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-04T15:31:15,073 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-06-04T15:31:15,074 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-04T15:31:15,077 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-04T15:31:15,080 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-04T15:31:15,081 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-04T15:31:15,083 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-04T15:31:15,086 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-06-04T15:31:15,087 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-06-04T15:31:15,089 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-06-04T15:31:15,091 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-06-04T15:31:15,092 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-04T15:31:15,095 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-04T15:31:15,098 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-06-04T15:31:15,099 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-06-04T15:31:15,102 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-06-04T15:31:15,104 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-06-04T15:31:15,106 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-06-04T15:31:15,107 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-06-04T15:31:15,110 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-06-04T15:31:15,113 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-06-04T15:31:15,115 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-06-04T15:31:15,116 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-04T15:31:15,118 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-04T15:31:15,120 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-04T15:31:15,123 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-04T15:31:15,124 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-04T15:31:15,127 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-06-04T15:31:15,128 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-06-04T15:31:15,131 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-06-04T15:31:15,133 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-06-04T15:31:15,135 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-04T15:31:15,138 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-04T15:31:15,141 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-04T15:31:15,142 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-04T15:31:15,144 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-06-04T15:31:15,147 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-06-04T15:31:15,148 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-04T15:31:15,150 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-04T15:31:15,152 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-04T15:31:15,154 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-04T15:31:15,156 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-06-04T15:31:15,159 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-06-04T15:31:15,160 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-04T15:31:15,162 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-04T15:31:15,164 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-04T15:31:15,166 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-04T15:31:15,168 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-04T15:31:15,170 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-04T15:31:15,172 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-04T15:31:15,175 creating build/bdist.linux-armv7l/wheel/omicverse/external/MetaQ 2026-06-04T15:31:15,176 copying build/lib/omicverse/external/MetaQ/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-04T15:31:15,178 copying build/lib/omicverse/external/MetaQ/engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-04T15:31:15,181 copying build/lib/omicverse/external/MetaQ/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-04T15:31:15,183 copying build/lib/omicverse/external/MetaQ/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-04T15:31:15,185 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-06-04T15:31:15,186 copying build/lib/omicverse/external/harmony/_harmony_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-04T15:31:15,189 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-04T15:31:15,191 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-04T15:31:15,193 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-04T15:31:15,195 copying build/lib/omicverse/external/harmony/_harmony_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-04T15:31:15,198 creating build/bdist.linux-armv7l/wheel/omicverse/external/py_scmetabolism 2026-06-04T15:31:15,199 copying build/lib/omicverse/external/py_scmetabolism/compute.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-04T15:31:15,202 copying build/lib/omicverse/external/py_scmetabolism/methods.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-04T15:31:15,204 copying build/lib/omicverse/external/py_scmetabolism/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-04T15:31:15,206 copying build/lib/omicverse/external/py_scmetabolism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-04T15:31:15,209 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-06-04T15:31:15,210 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-04T15:31:15,212 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-04T15:31:15,214 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-04T15:31:15,217 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-04T15:31:15,219 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-04T15:31:15,221 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-04T15:31:15,223 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-04T15:31:15,225 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-06-04T15:31:15,226 copying build/lib/omicverse/external/umap_pytorch/fuzzy_gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-04T15:31:15,228 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-04T15:31:15,231 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-04T15:31:15,233 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-04T15:31:15,235 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-04T15:31:15,237 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-04T15:31:15,240 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-06-04T15:31:15,241 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-04T15:31:15,243 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-04T15:31:15,245 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-04T15:31:15,248 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-06-04T15:31:15,249 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-04T15:31:15,251 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-04T15:31:15,253 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-04T15:31:15,254 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-04T15:31:15,256 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-04T15:31:15,258 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-04T15:31:15,260 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-04T15:31:15,263 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-06-04T15:31:15,264 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-06-04T15:31:15,266 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-06-04T15:31:15,267 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-06-04T15:31:15,270 creating build/bdist.linux-armv7l/wheel/omicverse/external/supercell 2026-06-04T15:31:15,271 copying build/lib/omicverse/external/supercell/supercell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/supercell 2026-06-04T15:31:15,273 copying build/lib/omicverse/external/supercell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/supercell 2026-06-04T15:31:15,276 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-06-04T15:31:15,277 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-06-04T15:31:15,279 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-04T15:31:15,281 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-04T15:31:15,284 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-04T15:31:15,285 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-04T15:31:15,288 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-06-04T15:31:15,289 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-04T15:31:15,291 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-04T15:31:15,293 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-04T15:31:15,295 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-04T15:31:15,298 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-06-04T15:31:15,300 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-06-04T15:31:15,301 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-04T15:31:15,303 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-04T15:31:15,309 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-04T15:31:15,312 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-04T15:31:15,314 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-04T15:31:15,316 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-06-04T15:31:15,318 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-04T15:31:15,320 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-04T15:31:15,326 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-04T15:31:15,328 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-04T15:31:15,331 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-04T15:31:15,333 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-04T15:31:15,336 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-06-04T15:31:15,337 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-06-04T15:31:15,340 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-06-04T15:31:15,342 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-04T15:31:15,344 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-04T15:31:15,346 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-04T15:31:15,349 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-06-04T15:31:15,350 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-04T15:31:15,353 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-04T15:31:15,356 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-04T15:31:15,358 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-04T15:31:15,361 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-04T15:31:15,364 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-06-04T15:31:15,365 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-04T15:31:15,368 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-04T15:31:15,370 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-04T15:31:15,373 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-04T15:31:15,375 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-04T15:31:15,377 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-04T15:31:15,379 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-04T15:31:15,382 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-04T15:31:15,385 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-04T15:31:15,388 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-06-04T15:31:15,390 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-06-04T15:31:15,392 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,393 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,396 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,398 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,400 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,403 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,405 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,408 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,410 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,413 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,415 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,418 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,420 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,423 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,426 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,428 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,430 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,433 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,435 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-04T15:31:15,438 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-04T15:31:15,440 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,442 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,444 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,447 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,449 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,451 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,453 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,455 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,457 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,460 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,462 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,464 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-04T15:31:15,466 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-04T15:31:15,469 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-04T15:31:15,471 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-04T15:31:15,474 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-04T15:31:15,477 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-06-04T15:31:15,478 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-06-04T15:31:15,480 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-06-04T15:31:15,483 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-06-04T15:31:15,484 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-06-04T15:31:15,486 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-06-04T15:31:15,493 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-06-04T15:31:15,501 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-04T15:31:15,502 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-06-04T15:31:15,521 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-06-04T15:31:15,541 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-06-04T15:31:15,559 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-06-04T15:31:15,565 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-06-04T15:31:15,569 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-06-04T15:31:15,571 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-06-04T15:31:15,573 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-06-04T15:31:15,575 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-06-04T15:31:15,577 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-04T15:31:15,579 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-04T15:31:15,581 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-04T15:31:15,584 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-04T15:31:15,587 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-04T15:31:15,591 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-04T15:31:15,593 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-06-04T15:31:15,595 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-06-04T15:31:15,597 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-06-04T15:31:15,599 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-06-04T15:31:15,601 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-06-04T15:31:15,605 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-06-04T15:31:15,606 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-06-04T15:31:15,609 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-06-04T15:31:15,612 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-06-04T15:31:15,614 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-06-04T15:31:15,618 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-06-04T15:31:15,621 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-06-04T15:31:15,624 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-06-04T15:31:15,627 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-06-04T15:31:15,629 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-06-04T15:31:15,632 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-06-04T15:31:15,636 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-06-04T15:31:15,637 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-06-04T15:31:15,640 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-06-04T15:31:15,642 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-06-04T15:31:15,645 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-06-04T15:31:15,647 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-04T15:31:15,649 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-04T15:31:15,652 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-04T15:31:15,654 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-04T15:31:15,657 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-06-04T15:31:15,658 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,661 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,663 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,665 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,668 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,670 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,672 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,674 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,677 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,679 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,682 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,684 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,686 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,688 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,691 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,693 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-04T15:31:15,696 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-06-04T15:31:15,698 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-04T15:31:15,700 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-04T15:31:15,707 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-04T15:31:15,713 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-04T15:31:15,716 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-04T15:31:15,720 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-04T15:31:15,722 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-04T15:31:15,729 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-06-04T15:31:15,730 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-04T15:31:15,733 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-04T15:31:15,735 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-04T15:31:15,737 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-04T15:31:15,739 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-04T15:31:15,741 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-04T15:31:15,744 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-04T15:31:15,747 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap 2026-06-04T15:31:15,749 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap/templates 2026-06-04T15:31:15,750 copying build/lib/omicverse/external/gsmap/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/templates 2026-06-04T15:31:15,753 copying build/lib/omicverse/external/gsmap/_style.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,756 copying build/lib/omicverse/external/gsmap/find_latent_representation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,758 copying build/lib/omicverse/external/gsmap/_regression_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,761 copying build/lib/omicverse/external/gsmap/generate_ldscore.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,763 copying build/lib/omicverse/external/gsmap/cauchy_combination.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,765 copying build/lib/omicverse/external/gsmap/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,768 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap/gnn 2026-06-04T15:31:15,770 copying build/lib/omicverse/external/gsmap/gnn/adjacency_matrix.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-04T15:31:15,772 copying build/lib/omicverse/external/gsmap/gnn/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-04T15:31:15,775 copying build/lib/omicverse/external/gsmap/gnn/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-04T15:31:15,778 copying build/lib/omicverse/external/gsmap/gnn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-04T15:31:15,780 copying build/lib/omicverse/external/gsmap/spatial_ldsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,783 copying build/lib/omicverse/external/gsmap/_visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,785 copying build/lib/omicverse/external/gsmap/_jackknife.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,788 copying build/lib/omicverse/external/gsmap/diagnosis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,791 copying build/lib/omicverse/external/gsmap/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,793 copying build/lib/omicverse/external/gsmap/_manhattan_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,795 copying build/lib/omicverse/external/gsmap/latent_to_gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,797 copying build/lib/omicverse/external/gsmap/_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-04T15:31:15,801 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-06-04T15:31:15,802 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-06-04T15:31:15,804 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-06-04T15:31:15,807 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-06-04T15:31:15,811 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-06-04T15:31:15,812 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-06-04T15:31:15,814 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-04T15:31:15,816 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-04T15:31:15,819 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-04T15:31:15,822 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-04T15:31:15,824 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-04T15:31:15,826 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-04T15:31:15,828 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-06-04T15:31:15,829 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-06-04T15:31:15,831 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-06-04T15:31:15,833 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-06-04T15:31:15,834 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,837 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,839 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,842 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,844 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,847 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,849 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,851 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,854 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,856 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,858 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,861 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-04T15:31:15,863 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-04T15:31:15,865 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-04T15:31:15,869 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-06-04T15:31:15,870 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,872 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,874 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,877 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,879 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,881 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,884 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,886 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,889 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,891 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,893 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,896 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,898 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,900 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,903 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,905 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,907 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,909 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,911 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,913 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,915 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,918 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-04T15:31:15,919 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-04T15:31:15,922 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-04T15:31:15,924 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-04T15:31:15,927 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-06-04T15:31:15,928 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,930 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,933 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,935 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,937 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,939 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,941 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,944 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,946 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,948 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,950 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,953 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-06-04T15:31:15,955 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-04T15:31:15,957 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-04T15:31:15,959 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-04T15:31:15,961 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-04T15:31:15,964 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-04T15:31:15,966 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-04T15:31:15,967 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,970 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,972 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,974 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,976 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,978 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,980 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,983 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,985 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,987 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,989 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,992 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,994 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,996 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:15,998 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:16,000 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:16,003 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-06-04T15:31:16,005 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-04T15:31:16,007 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-04T15:31:16,009 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-04T15:31:16,011 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-04T15:31:16,014 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-04T15:31:16,016 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-04T15:31:16,018 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-04T15:31:16,020 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-04T15:31:16,022 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:16,024 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:16,028 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-06-04T15:31:16,029 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-04T15:31:16,031 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-04T15:31:16,033 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-04T15:31:16,036 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-04T15:31:16,038 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-04T15:31:16,040 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-04T15:31:16,042 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-04T15:31:16,045 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-06-04T15:31:16,046 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-04T15:31:16,048 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-04T15:31:16,051 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-04T15:31:16,052 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-04T15:31:16,055 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:16,057 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:16,059 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:16,061 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:16,064 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-06-04T15:31:16,065 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-04T15:31:16,068 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-04T15:31:16,070 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-04T15:31:16,073 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-04T15:31:16,075 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-04T15:31:16,077 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-04T15:31:16,079 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-04T15:31:16,082 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-04T15:31:16,083 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-04T15:31:16,086 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-04T15:31:16,089 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-06-04T15:31:16,090 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,092 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,094 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,097 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,098 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,101 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,103 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,106 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,107 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,110 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,112 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-04T15:31:16,115 creating build/bdist.linux-armv7l/wheel/omicverse/external/mcRigor 2026-06-04T15:31:16,116 copying build/lib/omicverse/external/mcRigor/rigor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mcRigor 2026-06-04T15:31:16,118 copying build/lib/omicverse/external/mcRigor/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mcRigor 2026-06-04T15:31:16,121 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-06-04T15:31:16,122 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,124 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,126 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,128 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,130 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,132 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,134 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,137 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,140 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,142 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,144 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,146 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,148 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,150 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,152 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-04T15:31:16,155 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-06-04T15:31:16,156 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-04T15:31:16,159 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-04T15:31:16,161 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-04T15:31:16,163 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-04T15:31:16,165 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-04T15:31:16,167 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-04T15:31:16,169 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-04T15:31:16,171 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-04T15:31:16,175 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-06-04T15:31:16,176 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-04T15:31:16,178 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-04T15:31:16,181 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-04T15:31:16,183 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-04T15:31:16,185 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-04T15:31:16,188 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-06-04T15:31:16,190 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-06-04T15:31:16,191 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-06-04T15:31:16,194 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-06-04T15:31:16,197 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-06-04T15:31:16,200 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-06-04T15:31:16,201 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-06-04T15:31:16,203 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-06-04T15:31:16,205 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-04T15:31:16,206 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-04T15:31:16,209 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-04T15:31:16,213 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-04T15:31:16,214 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-04T15:31:16,217 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-04T15:31:16,222 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-04T15:31:16,227 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-06-04T15:31:16,229 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-06-04T15:31:16,231 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-06-04T15:31:16,234 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-06-04T15:31:16,235 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-04T15:31:16,238 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-04T15:31:16,241 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-04T15:31:16,244 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-04T15:31:16,246 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-04T15:31:16,248 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-06-04T15:31:16,249 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-04T15:31:16,251 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-04T15:31:16,253 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-04T15:31:16,255 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-04T15:31:16,258 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-04T15:31:16,260 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-06-04T15:31:16,262 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-06-04T15:31:16,263 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-06-04T15:31:16,266 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-06-04T15:31:16,269 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-06-04T15:31:16,271 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-06-04T15:31:16,273 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-04T15:31:16,275 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-04T15:31:16,278 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-04T15:31:16,280 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-04T15:31:16,282 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-04T15:31:16,285 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-04T15:31:16,286 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-04T15:31:16,289 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-04T15:31:16,292 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-06-04T15:31:16,293 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-04T15:31:16,296 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-04T15:31:16,298 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-04T15:31:16,300 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-04T15:31:16,302 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-04T15:31:16,303 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-04T15:31:16,306 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-06-04T15:31:16,307 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-04T15:31:16,309 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-04T15:31:16,312 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-04T15:31:16,314 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-04T15:31:16,316 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-04T15:31:16,318 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-04T15:31:16,321 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-06-04T15:31:16,323 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-06-04T15:31:16,324 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-04T15:31:16,326 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-04T15:31:16,328 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-04T15:31:16,330 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-04T15:31:16,332 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-04T15:31:16,334 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,337 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,340 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,341 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,343 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,346 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,348 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,350 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,353 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-06-04T15:31:16,354 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-04T15:31:16,356 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-04T15:31:16,359 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-04T15:31:16,361 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-04T15:31:16,364 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-04T15:31:16,366 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-04T15:31:16,369 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-04T15:31:16,371 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-04T15:31:16,373 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,375 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,377 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,378 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,381 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,382 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,384 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,387 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,389 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,391 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,392 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,394 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,395 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-04T15:31:16,398 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-06-04T15:31:16,399 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-06-04T15:31:16,401 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-06-04T15:31:16,403 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-06-04T15:31:16,406 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-06-04T15:31:16,407 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-06-04T15:31:16,410 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-06-04T15:31:16,411 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-06-04T15:31:16,414 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-06-04T15:31:16,415 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-04T15:31:16,418 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-04T15:31:16,420 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-04T15:31:16,422 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-04T15:31:16,424 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-04T15:31:16,426 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-06-04T15:31:16,427 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,430 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,432 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,434 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,437 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,438 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,440 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,442 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,444 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,447 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,448 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-04T15:31:16,452 copying build/lib/omicverse/external/torch_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-06-04T15:31:16,455 creating build/bdist.linux-armv7l/wheel/omicverse/external/scfea 2026-06-04T15:31:16,456 copying build/lib/omicverse/external/scfea/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-04T15:31:16,458 copying build/lib/omicverse/external/scfea/scFEA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-04T15:31:16,460 copying build/lib/omicverse/external/scfea/DatasetFlux.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-04T15:31:16,461 copying build/lib/omicverse/external/scfea/ClassFlux.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-04T15:31:16,463 copying build/lib/omicverse/external/scfea/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-04T15:31:16,465 creating build/bdist.linux-armv7l/wheel/omicverse/external/scfea/data 2026-06-04T15:31:16,466 copying build/lib/omicverse/external/scfea/data/cmMat_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-04T15:31:16,469 copying build/lib/omicverse/external/scfea/data/cName_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-04T15:31:16,471 copying build/lib/omicverse/external/scfea/data/Human_M168_information.symbols.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-04T15:31:16,473 copying build/lib/omicverse/external/scfea/data/cmMat_complete_mouse_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-04T15:31:16,476 copying build/lib/omicverse/external/scfea/data/cName_complete_mouse_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-04T15:31:16,477 copying build/lib/omicverse/external/scfea/data/module_gene_complete_mouse_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-04T15:31:16,479 copying build/lib/omicverse/external/scfea/data/module_gene_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-04T15:31:16,482 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-06-04T15:31:16,483 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-06-04T15:31:16,485 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-06-04T15:31:16,488 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-06-04T15:31:16,490 creating build/bdist.linux-armv7l/wheel/omicverse/external/geosketch 2026-06-04T15:31:16,491 copying build/lib/omicverse/external/geosketch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-04T15:31:16,493 copying build/lib/omicverse/external/geosketch/sketch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-04T15:31:16,495 copying build/lib/omicverse/external/geosketch/kmeanspp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-04T15:31:16,497 copying build/lib/omicverse/external/geosketch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-04T15:31:16,499 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-06-04T15:31:16,500 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,503 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,505 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,507 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,510 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,512 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,514 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,517 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,519 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,521 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,523 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,525 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-04T15:31:16,528 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-06-04T15:31:16,529 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-04T15:31:16,533 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,534 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,536 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,538 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,539 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,542 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,544 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,545 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,548 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,550 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,552 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,554 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,557 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,559 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,561 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,563 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,565 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,568 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,571 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-04T15:31:16,573 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-04T15:31:16,574 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-04T15:31:16,577 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-04T15:31:16,579 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-06-04T15:31:16,580 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-06-04T15:31:16,583 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-06-04T15:31:16,585 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-06-04T15:31:16,587 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost 2026-06-04T15:31:16,588 copying build/lib/omicverse/external/mebocost/mebocost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-04T15:31:16,592 copying build/lib/omicverse/external/mebocost/fba_handler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-04T15:31:16,594 copying build/lib/omicverse/external/mebocost/crosstalk_plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-04T15:31:16,597 copying build/lib/omicverse/external/mebocost/crosstalk_diff.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-04T15:31:16,600 copying build/lib/omicverse/external/mebocost/MetEstimator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-04T15:31:16,603 copying build/lib/omicverse/external/mebocost/crosstalk_calculator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-04T15:31:16,605 copying build/lib/omicverse/external/mebocost/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-04T15:31:16,608 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data 2026-06-04T15:31:16,610 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db 2026-06-04T15:31:16,611 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/human 2026-06-04T15:31:16,612 copying build/lib/omicverse/external/mebocost/data/mebocost_db/human/human_met_sensor_update_Oct21_2025.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/human 2026-06-04T15:31:16,616 copying build/lib/omicverse/external/mebocost/data/mebocost_db/human/metabolite_associated_gene_reaction_HMDB_summary.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/human 2026-06-04T15:31:16,635 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-04T15:31:16,636 copying build/lib/omicverse/external/mebocost/data/mebocost_db/mouse/mouse_met_sensor_update_Oct21_2025.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-04T15:31:16,640 copying build/lib/omicverse/external/mebocost/data/mebocost_db/mouse/metabolite_associated_gene_reaction_HMDB_summary_mouse.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-04T15:31:16,659 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/common 2026-06-04T15:31:16,660 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/hmdb_blood_metabolite_concentration.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-06-04T15:31:16,662 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/metabolite_annotation_HMDB_summary.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-06-04T15:31:16,682 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/human_mouse_homology_gene_pair.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-06-04T15:31:16,690 creating build/bdist.linux-armv7l/wheel/omicverse/external/gtfparse 2026-06-04T15:31:16,691 copying build/lib/omicverse/external/gtfparse/parsing_error.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-04T15:31:16,693 copying build/lib/omicverse/external/gtfparse/attribute_parsing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-04T15:31:16,696 copying build/lib/omicverse/external/gtfparse/create_missing_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-04T15:31:16,699 copying build/lib/omicverse/external/gtfparse/read_gtf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-04T15:31:16,701 copying build/lib/omicverse/external/gtfparse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-04T15:31:16,704 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-06-04T15:31:16,705 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-04T15:31:16,708 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-04T15:31:16,711 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-04T15:31:16,715 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-06-04T15:31:16,716 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-06-04T15:31:16,718 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-06-04T15:31:16,721 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-06-04T15:31:16,723 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-04T15:31:16,726 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-04T15:31:16,728 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-04T15:31:16,731 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-04T15:31:16,734 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-06-04T15:31:16,736 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-04T15:31:16,738 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-04T15:31:16,740 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-04T15:31:16,743 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-04T15:31:16,744 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-04T15:31:16,747 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-06-04T15:31:16,748 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-04T15:31:16,750 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-04T15:31:16,753 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-04T15:31:16,755 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-04T15:31:16,758 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-04T15:31:16,760 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-04T15:31:16,762 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-06-04T15:31:16,763 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-06-04T15:31:16,765 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-06-04T15:31:16,768 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-06-04T15:31:16,770 creating build/bdist.linux-armv7l/wheel/omicverse/external/monocle2_py 2026-06-04T15:31:16,771 copying build/lib/omicverse/external/monocle2_py/dimension_reduction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-04T15:31:16,773 copying build/lib/omicverse/external/monocle2_py/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-04T15:31:16,776 copying build/lib/omicverse/external/monocle2_py/ddrtree.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-04T15:31:16,778 copying build/lib/omicverse/external/monocle2_py/ordering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-04T15:31:16,781 copying build/lib/omicverse/external/monocle2_py/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-04T15:31:16,784 copying build/lib/omicverse/external/monocle2_py/differential.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-04T15:31:16,787 copying build/lib/omicverse/external/monocle2_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-04T15:31:16,789 copying build/lib/omicverse/external/monocle2_py/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-04T15:31:16,792 copying build/lib/omicverse/external/monocle2_py/clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-04T15:31:16,795 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-06-04T15:31:16,796 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-06-04T15:31:16,800 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-06-04T15:31:16,801 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-06-04T15:31:16,803 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-06-04T15:31:16,806 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-06-04T15:31:16,807 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-06-04T15:31:16,809 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-06-04T15:31:16,812 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-06-04T15:31:16,814 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-04T15:31:16,815 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-04T15:31:17,311 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-04T15:31:17,314 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-04T15:31:17,344 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-06-04T15:31:17,347 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-06-04T15:31:17,350 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-06-04T15:31:17,351 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-06-04T15:31:17,354 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-06-04T15:31:17,355 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-04T15:31:17,357 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-04T15:31:17,359 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-04T15:31:17,362 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-06-04T15:31:17,364 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-06-04T15:31:17,366 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-06-04T15:31:17,368 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-04T15:31:17,370 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-04T15:31:17,372 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-04T15:31:17,375 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-06-04T15:31:17,377 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-06-04T15:31:17,379 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-06-04T15:31:17,382 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-06-04T15:31:17,384 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-04T15:31:17,386 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-04T15:31:17,389 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-06-04T15:31:17,390 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-06-04T15:31:17,393 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-06-04T15:31:17,395 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-06-04T15:31:17,398 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-06-04T15:31:17,400 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-06-04T15:31:17,403 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellcharter 2026-06-04T15:31:17,404 copying build/lib/omicverse/external/cellcharter/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-04T15:31:17,406 copying build/lib/omicverse/external/cellcharter/_aggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-04T15:31:17,409 copying build/lib/omicverse/external/cellcharter/_gmm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-04T15:31:17,411 copying build/lib/omicverse/external/cellcharter/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-04T15:31:17,413 copying build/lib/omicverse/external/cellcharter/_autok.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-04T15:31:17,416 copying build/lib/omicverse/external/cellcharter/_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-04T15:31:17,418 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyensembl 2026-06-04T15:31:17,419 copying build/lib/omicverse/external/pyensembl/fasta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,422 copying build/lib/omicverse/external/pyensembl/search.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,424 copying build/lib/omicverse/external/pyensembl/serializable.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,427 copying build/lib/omicverse/external/pyensembl/species.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,429 copying build/lib/omicverse/external/pyensembl/ensembl_url_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,432 copying build/lib/omicverse/external/pyensembl/exon.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,434 copying build/lib/omicverse/external/pyensembl/locus.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,436 copying build/lib/omicverse/external/pyensembl/gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,438 copying build/lib/omicverse/external/pyensembl/ensembl_release.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,441 copying build/lib/omicverse/external/pyensembl/reference_name.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,443 copying build/lib/omicverse/external/pyensembl/genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,446 copying build/lib/omicverse/external/pyensembl/sequence_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,449 copying build/lib/omicverse/external/pyensembl/normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,451 copying build/lib/omicverse/external/pyensembl/download_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,454 copying build/lib/omicverse/external/pyensembl/shell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,457 copying build/lib/omicverse/external/pyensembl/ensembl_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,459 copying build/lib/omicverse/external/pyensembl/transcript.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,461 copying build/lib/omicverse/external/pyensembl/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,463 copying build/lib/omicverse/external/pyensembl/common.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,466 copying build/lib/omicverse/external/pyensembl/locus_with_genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,468 copying build/lib/omicverse/external/pyensembl/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,471 copying build/lib/omicverse/external/pyensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-04T15:31:17,474 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-06-04T15:31:17,476 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,478 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,481 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,483 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,486 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,488 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,491 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,494 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,496 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,498 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,501 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,504 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,506 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-04T15:31:17,509 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-06-04T15:31:17,511 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-06-04T15:31:17,512 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-04T15:31:17,515 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-04T15:31:17,518 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-04T15:31:17,520 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-04T15:31:17,524 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-06-04T15:31:17,525 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-04T15:31:17,528 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-04T15:31:17,531 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-04T15:31:17,534 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-04T15:31:17,536 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-04T15:31:17,538 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-04T15:31:17,542 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-06-04T15:31:17,543 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-06-04T15:31:17,546 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-06-04T15:31:17,548 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-06-04T15:31:17,551 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-06-04T15:31:17,552 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-06-04T15:31:17,555 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-06-04T15:31:17,558 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-06-04T15:31:17,561 creating build/bdist.linux-armv7l/wheel/omicverse/external/pylimma 2026-06-04T15:31:17,562 copying build/lib/omicverse/external/pylimma/fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pylimma 2026-06-04T15:31:17,566 copying build/lib/omicverse/external/pylimma/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pylimma 2026-06-04T15:31:17,568 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold 2026-06-04T15:31:17,570 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/cell_cycle 2026-06-04T15:31:17,571 copying build/lib/omicverse/external/scTenifold/cell_cycle/scoring.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-06-04T15:31:17,573 copying build/lib/omicverse/external/scTenifold/cell_cycle/UCell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-06-04T15:31:17,575 copying build/lib/omicverse/external/scTenifold/cell_cycle/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-06-04T15:31:17,577 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/core 2026-06-04T15:31:17,578 copying build/lib/omicverse/external/scTenifold/core/_QC.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-04T15:31:17,580 copying build/lib/omicverse/external/scTenifold/core/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-04T15:31:17,582 copying build/lib/omicverse/external/scTenifold/core/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-04T15:31:17,584 copying build/lib/omicverse/external/scTenifold/core/_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-04T15:31:17,586 copying build/lib/omicverse/external/scTenifold/core/_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-04T15:31:17,588 copying build/lib/omicverse/external/scTenifold/core/_ko.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-04T15:31:17,590 copying build/lib/omicverse/external/scTenifold/core/_decomposition.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-04T15:31:17,592 copying build/lib/omicverse/external/scTenifold/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-04T15:31:17,594 copying build/lib/omicverse/external/scTenifold/core/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-04T15:31:17,596 copying build/lib/omicverse/external/scTenifold/core/_base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-04T15:31:17,599 copying build/lib/omicverse/external/scTenifold/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold 2026-06-04T15:31:17,601 copying build/lib/omicverse/external/scTenifold/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold 2026-06-04T15:31:17,604 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/plotting 2026-06-04T15:31:17,605 copying build/lib/omicverse/external/scTenifold/plotting/_dim_reduction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-06-04T15:31:17,607 copying build/lib/omicverse/external/scTenifold/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-06-04T15:31:17,609 copying build/lib/omicverse/external/scTenifold/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-06-04T15:31:17,612 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-06-04T15:31:17,613 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-04T15:31:17,615 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-04T15:31:17,618 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-04T15:31:17,621 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-04T15:31:17,623 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-04T15:31:17,625 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-04T15:31:17,627 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-04T15:31:17,630 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-04T15:31:17,633 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-04T15:31:17,636 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-06-04T15:31:17,637 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,639 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,642 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,644 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,646 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,650 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,655 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,657 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,660 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,662 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,665 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,668 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-04T15:31:17,672 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,674 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,677 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,679 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-06-04T15:31:17,681 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-06-04T15:31:17,776 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-06-04T15:31:17,782 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-06-04T15:31:17,786 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,788 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,791 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,793 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,796 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,798 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,800 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,802 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,805 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,807 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-04T15:31:17,809 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:31:17,811 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:31:17,813 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:31:17,816 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:31:17,819 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:31:17,821 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-04T15:31:17,824 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-06-04T15:31:17,826 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-06-04T15:31:17,828 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-06-04T15:31:17,829 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-04T15:31:17,831 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-04T15:31:17,834 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-04T15:31:17,835 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-04T15:31:17,839 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-06-04T15:31:17,840 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-06-04T15:31:17,843 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-06-04T15:31:17,845 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-06-04T15:31:17,848 creating build/bdist.linux-armv7l/wheel/omicverse/es 2026-06-04T15:31:17,849 copying build/lib/omicverse/es/_mlm.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,852 copying build/lib/omicverse/es/_ucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,855 copying build/lib/omicverse/es/_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,857 copying build/lib/omicverse/es/_decouple.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,859 copying build/lib/omicverse/es/_mdt.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,862 copying build/lib/omicverse/es/_gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,865 copying build/lib/omicverse/es/_viper.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,867 copying build/lib/omicverse/es/_ora.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,870 copying build/lib/omicverse/es/_datatype.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,872 copying build/lib/omicverse/es/_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,875 copying build/lib/omicverse/es/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,877 copying build/lib/omicverse/es/_consensus.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,879 copying build/lib/omicverse/es/_waggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,882 copying build/lib/omicverse/es/_method.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,884 copying build/lib/omicverse/es/_odeps.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,886 copying build/lib/omicverse/es/_ulm.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,889 copying build/lib/omicverse/es/_zscore.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,891 copying build/lib/omicverse/es/_query_set.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,893 copying build/lib/omicverse/es/_pv.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,895 copying build/lib/omicverse/es/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,898 copying build/lib/omicverse/es/_methods.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,900 copying build/lib/omicverse/es/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,902 copying build/lib/omicverse/es/_udt.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,904 copying build/lib/omicverse/es/_gsva.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,907 copying build/lib/omicverse/es/_run.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-04T15:31:17,910 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-06-04T15:31:17,912 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-06-04T15:31:17,913 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-06-04T15:31:17,915 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-06-04T15:31:17,917 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-06-04T15:31:17,919 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-06-04T15:31:17,922 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-06-04T15:31:17,924 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-06-04T15:31:17,925 copying build/lib/omicverse/io/spatial/_xenium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-04T15:31:17,928 copying build/lib/omicverse/io/spatial/_atera.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-04T15:31:17,931 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-04T15:31:17,933 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-04T15:31:17,936 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-04T15:31:17,939 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-04T15:31:17,941 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-06-04T15:31:17,943 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-06-04T15:31:17,945 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-04T15:31:17,947 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-04T15:31:17,950 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-04T15:31:17,952 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-04T15:31:17,955 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-06-04T15:31:17,957 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,960 copying build/lib/omicverse/pl/_scatterplot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,963 copying build/lib/omicverse/pl/_funkyheatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,966 copying build/lib/omicverse/pl/_scanpy_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,968 copying build/lib/omicverse/pl/_plot1cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,971 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,974 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,977 copying build/lib/omicverse/pl/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,979 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,983 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,986 copying build/lib/omicverse/pl/_cnv.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,989 copying build/lib/omicverse/pl/_trajectory.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,993 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:17,997 copying build/lib/omicverse/pl/_plot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,001 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,004 copying build/lib/omicverse/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,013 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,016 copying build/lib/omicverse/pl/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,019 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,023 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,025 copying build/lib/omicverse/pl/_branch_streamplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,028 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,031 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,037 copying build/lib/omicverse/pl/_heatmap_marsilea.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,042 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,045 copying build/lib/omicverse/pl/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,048 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,053 copying build/lib/omicverse/pl/_venn_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,056 copying build/lib/omicverse/pl/_perturbation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,059 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,062 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,066 copying build/lib/omicverse/pl/_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,069 copying build/lib/omicverse/pl/_dynamic_trends.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,072 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,075 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,078 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,080 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-04T15:31:18,083 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-04T15:31:18,086 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-06-04T15:31:18,088 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,091 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,093 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,096 copying build/lib/omicverse/jarvis/gemini_cli_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,099 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,102 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,104 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,107 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,110 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,112 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,115 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-06-04T15:31:18,117 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-06-04T15:31:18,119 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-06-04T15:31:18,121 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-06-04T15:31:18,124 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-06-04T15:31:18,126 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-06-04T15:31:18,129 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-06-04T15:31:18,131 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,133 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,136 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,140 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-06-04T15:31:18,141 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-04T15:31:18,145 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-04T15:31:18,147 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-04T15:31:18,150 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-04T15:31:18,153 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-04T15:31:18,156 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-04T15:31:18,158 copying build/lib/omicverse/jarvis/channels/channel_core.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-04T15:31:18,160 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-04T15:31:18,163 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,166 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-06-04T15:31:18,167 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-04T15:31:18,169 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-04T15:31:18,170 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-04T15:31:18,172 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-04T15:31:18,174 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-04T15:31:18,176 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-04T15:31:18,179 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-04T15:31:18,180 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,182 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,185 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,187 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-04T15:31:18,190 copying build/lib/omicverse/_oom_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-04T15:31:18,192 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-06-04T15:31:18,193 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-04T15:31:18,196 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-04T15:31:18,198 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-04T15:31:18,201 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-04T15:31:18,203 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-04T15:31:18,205 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-04T15:31:18,208 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-04T15:31:18,210 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-04T15:31:18,212 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-04T15:31:18,214 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-04T15:31:18,217 copying build/lib/omicverse/_optional.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-04T15:31:18,220 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-06-04T15:31:18,221 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,224 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,229 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-06-04T15:31:18,230 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-04T15:31:18,232 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-04T15:31:18,234 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-04T15:31:18,236 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-04T15:31:18,238 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-04T15:31:18,240 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-04T15:31:18,243 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-06-04T15:31:18,244 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-04T15:31:18,246 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-04T15:31:18,249 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-04T15:31:18,252 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-04T15:31:18,255 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,259 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,261 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,263 copying build/lib/omicverse/single/_nmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,266 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,269 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,271 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,274 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,277 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,280 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,283 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,286 copying build/lib/omicverse/single/_pseudobulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,288 copying build/lib/omicverse/single/_comm.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,290 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,292 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,295 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,298 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,300 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,303 copying build/lib/omicverse/single/_cnv.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,305 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,308 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,311 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,314 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,317 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,320 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,323 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,325 copying build/lib/omicverse/single/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,328 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,331 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,333 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,336 copying build/lib/omicverse/single/_monocle.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,339 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,342 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,344 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,347 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,349 copying build/lib/omicverse/single/_stavia.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,352 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,355 copying build/lib/omicverse/single/_pseudotime_fate.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,360 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,363 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,370 copying build/lib/omicverse/single/_liana.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,373 creating build/bdist.linux-armv7l/wheel/omicverse/single/_metacell_backends 2026-06-04T15:31:18,374 copying build/lib/omicverse/single/_metacell_backends/mc2_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-04T15:31:18,376 copying build/lib/omicverse/single/_metacell_backends/geosketch_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-04T15:31:18,379 copying build/lib/omicverse/single/_metacell_backends/supercell_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-04T15:31:18,381 copying build/lib/omicverse/single/_metacell_backends/kmeans_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-04T15:31:18,383 copying build/lib/omicverse/single/_metacell_backends/random_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-04T15:31:18,385 copying build/lib/omicverse/single/_metacell_backends/seacells_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-04T15:31:18,387 copying build/lib/omicverse/single/_metacell_backends/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-04T15:31:18,389 copying build/lib/omicverse/single/_metacell_backends/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-04T15:31:18,391 copying build/lib/omicverse/single/_metacell_backends/metaq_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-04T15:31:18,393 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,396 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,398 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,400 copying build/lib/omicverse/single/_perturb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,404 copying build/lib/omicverse/single/_dynamic_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,407 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,410 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,412 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,418 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,420 copying build/lib/omicverse/single/_autoresolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,423 creating build/bdist.linux-armv7l/wheel/omicverse/single/ev 2026-06-04T15:31:18,425 copying build/lib/omicverse/single/ev/_pseudobulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,427 copying build/lib/omicverse/single/ev/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,429 copying build/lib/omicverse/single/ev/_annotate.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,432 copying build/lib/omicverse/single/ev/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,435 copying build/lib/omicverse/single/ev/_coloc.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,438 copying build/lib/omicverse/single/ev/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,440 copying build/lib/omicverse/single/ev/_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,442 copying build/lib/omicverse/single/ev/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,444 copying build/lib/omicverse/single/ev/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,447 copying build/lib/omicverse/single/ev/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,449 copying build/lib/omicverse/single/ev/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-04T15:31:18,452 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,456 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,458 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,462 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-04T15:31:18,464 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-04T15:31:18,468 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-06-04T15:31:18,469 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-06-04T15:31:18,472 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-06-04T15:31:18,473 copying build/lib/omicverse/datasets/_ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-04T15:31:18,476 copying build/lib/omicverse/datasets/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-04T15:31:18,478 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-04T15:31:18,483 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files 2026-06-04T15:31:18,484 copying build/lib/omicverse/datasets/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-04T15:31:18,490 copying build/lib/omicverse/datasets/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-04T15:31:18,492 copying build/lib/omicverse/datasets/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-04T15:31:18,569 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files/TF 2026-06-04T15:31:18,570 copying build/lib/omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-04T15:31:18,581 copying build/lib/omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-04T15:31:18,584 copying build/lib/omicverse/datasets/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-04T15:31:18,586 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-04T15:31:18,598 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-04T15:31:18,613 copying build/lib/omicverse/datasets/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-04T15:31:18,615 copying build/lib/omicverse/datasets/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-04T15:31:18,617 copying build/lib/omicverse/datasets/_timecourse.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-04T15:31:18,619 copying build/lib/omicverse/datasets/_airr.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-04T15:31:18,621 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-04T15:31:18,623 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-04T15:31:18,625 copying build/lib/omicverse/datasets/_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-04T15:31:18,627 copying build/lib/omicverse/datasets/_ambient.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-04T15:31:18,629 copying build/lib/omicverse/datasets/_protein.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-04T15:31:18,631 running install_egg_info 2026-06-04T15:31:18,637 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.2.1-py3.11.egg-info 2026-06-04T15:31:18,652 running install_scripts 2026-06-04T15:31:18,665 creating build/bdist.linux-armv7l/wheel/omicverse-2.2.1.dist-info/WHEEL 2026-06-04T15:31:18,668 creating '/tmp/pip-wheel-m1woznyd/.tmp-g0f6zi3v/omicverse-2.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-04T15:31:18,672 adding 'omicverse/__init__.py' 2026-06-04T15:31:18,673 adding 'omicverse/_lazy_loader.py' 2026-06-04T15:31:18,676 adding 'omicverse/_monitor.py' 2026-06-04T15:31:18,677 adding 'omicverse/_oom_compat.py' 2026-06-04T15:31:18,679 adding 'omicverse/_optional.py' 2026-06-04T15:31:18,685 adding 'omicverse/_registry.py' 2026-06-04T15:31:18,690 adding 'omicverse/_settings.py' 2026-06-04T15:31:18,693 adding 'omicverse/claw.py' 2026-06-04T15:31:18,695 adding 'omicverse/cli.py' 2026-06-04T15:31:18,697 adding 'omicverse/agent/__init__.py' 2026-06-04T15:31:18,700 adding 'omicverse/airr/__init__.py' 2026-06-04T15:31:18,705 adding 'omicverse/airr/_bcr.py' 2026-06-04T15:31:18,712 adding 'omicverse/airr/_bulk.py' 2026-06-04T15:31:18,715 adding 'omicverse/airr/_clonotype.py' 2026-06-04T15:31:18,718 adding 'omicverse/airr/_metrics.py' 2026-06-04T15:31:18,720 adding 'omicverse/airr/_qc.py' 2026-06-04T15:31:18,729 adding 'omicverse/airr/_tcr.py' 2026-06-04T15:31:18,735 adding 'omicverse/airr/_tcr_gex.py' 2026-06-04T15:31:18,739 adding 'omicverse/airr/io.py' 2026-06-04T15:31:18,742 adding 'omicverse/airr/plotting.py' 2026-06-04T15:31:18,746 adding 'omicverse/alignment/STAR.py' 2026-06-04T15:31:18,748 adding 'omicverse/alignment/__init__.py' 2026-06-04T15:31:18,751 adding 'omicverse/alignment/_cli_utils.py' 2026-06-04T15:31:18,753 adding 'omicverse/alignment/_db.py' 2026-06-04T15:31:18,758 adding 'omicverse/alignment/amplicon_16s.py' 2026-06-04T15:31:18,761 adding 'omicverse/alignment/cutadapt.py' 2026-06-04T15:31:18,764 adding 'omicverse/alignment/dada2.py' 2026-06-04T15:31:18,767 adding 'omicverse/alignment/fastp.py' 2026-06-04T15:31:18,769 adding 'omicverse/alignment/fasttree.py' 2026-06-04T15:31:18,772 adding 'omicverse/alignment/featureCount.py' 2026-06-04T15:31:18,774 adding 'omicverse/alignment/fq_dump.py' 2026-06-04T15:31:18,780 adding 'omicverse/alignment/kb_api.py' 2026-06-04T15:31:18,782 adding 'omicverse/alignment/mafft.py' 2026-06-04T15:31:18,784 adding 'omicverse/alignment/phylogeny.py' 2026-06-04T15:31:18,786 adding 'omicverse/alignment/pipeline.py' 2026-06-04T15:31:18,788 adding 'omicverse/alignment/prefetch.py' 2026-06-04T15:31:18,793 adding 'omicverse/alignment/simpleaf.py' 2026-06-04T15:31:18,797 adding 'omicverse/alignment/vsearch.py' 2026-06-04T15:31:18,810 adding 'omicverse/bulk/_Deseq2.py' 2026-06-04T15:31:18,816 adding 'omicverse/bulk/_Enrichment.py' 2026-06-04T15:31:18,821 adding 'omicverse/bulk/_Gene_module.py' 2026-06-04T15:31:18,823 adding 'omicverse/bulk/__init__.py' 2026-06-04T15:31:18,872 adding 'omicverse/bulk/_chm13.py' 2026-06-04T15:31:18,878 adding 'omicverse/bulk/_combat.py' 2026-06-04T15:31:18,879 adding 'omicverse/bulk/_decov.py' 2026-06-04T15:31:18,881 adding 'omicverse/bulk/_df_apply.py' 2026-06-04T15:31:18,886 adding 'omicverse/bulk/_dynamicTree.py' 2026-06-04T15:31:18,888 adding 'omicverse/bulk/_network.py' 2026-06-04T15:31:18,890 adding 'omicverse/bulk/_tcga.py' 2026-06-04T15:31:18,892 adding 'omicverse/bulk/_wgcna.py' 2026-06-04T15:31:18,894 adding 'omicverse/bulk/_alignment/__init__.py' 2026-06-04T15:31:18,895 adding 'omicverse/bulk2single/__init__.py' 2026-06-04T15:31:18,899 adding 'omicverse/bulk2single/_bulk2single.py' 2026-06-04T15:31:18,900 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-06-04T15:31:18,903 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-06-04T15:31:18,907 adding 'omicverse/bulk2single/_map_utils.py' 2026-06-04T15:31:18,911 adding 'omicverse/bulk2single/_map_utils1.py' 2026-06-04T15:31:18,914 adding 'omicverse/bulk2single/_scsemi.py' 2026-06-04T15:31:18,916 adding 'omicverse/bulk2single/_single2spatial.py' 2026-06-04T15:31:18,918 adding 'omicverse/bulk2single/_utils.py' 2026-06-04T15:31:18,921 adding 'omicverse/bulk2single/_vae.py' 2026-06-04T15:31:18,923 adding 'omicverse/datasets/__init__.py' 2026-06-04T15:31:18,925 adding 'omicverse/datasets/_airr.py' 2026-06-04T15:31:18,926 adding 'omicverse/datasets/_ambient.py' 2026-06-04T15:31:18,933 adding 'omicverse/datasets/_datasets.py' 2026-06-04T15:31:18,935 adding 'omicverse/datasets/_ev.py' 2026-06-04T15:31:18,937 adding 'omicverse/datasets/_genetics.py' 2026-06-04T15:31:18,938 adding 'omicverse/datasets/_metabolism.py' 2026-06-04T15:31:18,940 adding 'omicverse/datasets/_protein.py' 2026-06-04T15:31:18,941 adding 'omicverse/datasets/_signatures.py' 2026-06-04T15:31:18,943 adding 'omicverse/datasets/_timecourse.py' 2026-06-04T15:31:18,945 adding 'omicverse/datasets/data_files/README.md' 2026-06-04T15:31:18,984 adding 'omicverse/datasets/data_files/features_model_training_17.csv' 2026-06-04T15:31:18,987 adding 'omicverse/datasets/data_files/human_alias_list.txt' 2026-06-04T15:31:19,507 adding 'omicverse/datasets/data_files/mart_export.txt' 2026-06-04T15:31:19,539 adding 'omicverse/datasets/data_files/smoothDatakNN.py' 2026-06-04T15:31:19,542 adding 'omicverse/datasets/data_files/TF/allTFs_human.txt' 2026-06-04T15:31:19,545 adding 'omicverse/datasets/data_files/TF/allTFs_mouse.txt' 2026-06-04T15:31:19,568 adding 'omicverse/datasets/data_files/TF/allTFs_zebrafish.txt' 2026-06-04T15:31:19,610 adding 'omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-06-04T15:31:19,650 adding 'omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-06-04T15:31:19,656 adding 'omicverse/epi/__init__.py' 2026-06-04T15:31:19,657 adding 'omicverse/epi/_utils.py' 2026-06-04T15:31:19,659 adding 'omicverse/epi/bulk.py' 2026-06-04T15:31:19,660 adding 'omicverse/epi/data.py' 2026-06-04T15:31:19,661 adding 'omicverse/epi/datasets.py' 2026-06-04T15:31:19,663 adding 'omicverse/epi/io.py' 2026-06-04T15:31:19,664 adding 'omicverse/epi/pl.py' 2026-06-04T15:31:19,665 adding 'omicverse/epi/pp.py' 2026-06-04T15:31:19,666 adding 'omicverse/epi/single.py' 2026-06-04T15:31:19,668 adding 'omicverse/epi/tl.py' 2026-06-04T15:31:19,669 adding 'omicverse/epi/upstream.py' 2026-06-04T15:31:19,670 adding 'omicverse/epi/utils.py' 2026-06-04T15:31:19,673 adding 'omicverse/es/__init__.py' 2026-06-04T15:31:19,675 adding 'omicverse/es/_aucell.py' 2026-06-04T15:31:19,676 adding 'omicverse/es/_consensus.py' 2026-06-04T15:31:19,678 adding 'omicverse/es/_data.py' 2026-06-04T15:31:19,679 adding 'omicverse/es/_datatype.py' 2026-06-04T15:31:19,680 adding 'omicverse/es/_decouple.py' 2026-06-04T15:31:19,684 adding 'omicverse/es/_engine.py' 2026-06-04T15:31:19,686 adding 'omicverse/es/_gsea.py' 2026-06-04T15:31:19,690 adding 'omicverse/es/_gsva.py' 2026-06-04T15:31:19,692 adding 'omicverse/es/_mdt.py' 2026-06-04T15:31:19,693 adding 'omicverse/es/_method.py' 2026-06-04T15:31:19,694 adding 'omicverse/es/_methods.py' 2026-06-04T15:31:19,696 adding 'omicverse/es/_mlm.py' 2026-06-04T15:31:19,698 adding 'omicverse/es/_net.py' 2026-06-04T15:31:19,700 adding 'omicverse/es/_odeps.py' 2026-06-04T15:31:19,702 adding 'omicverse/es/_ora.py' 2026-06-04T15:31:19,704 adding 'omicverse/es/_pv.py' 2026-06-04T15:31:19,705 adding 'omicverse/es/_query_set.py' 2026-06-04T15:31:19,706 adding 'omicverse/es/_run.py' 2026-06-04T15:31:19,709 adding 'omicverse/es/_ucell.py' 2026-06-04T15:31:19,711 adding 'omicverse/es/_udt.py' 2026-06-04T15:31:19,713 adding 'omicverse/es/_ulm.py' 2026-06-04T15:31:19,716 adding 'omicverse/es/_viper.py' 2026-06-04T15:31:19,718 adding 'omicverse/es/_waggr.py' 2026-06-04T15:31:19,720 adding 'omicverse/es/_zscore.py' 2026-06-04T15:31:19,723 adding 'omicverse/external/__init__.py' 2026-06-04T15:31:19,725 adding 'omicverse/external/torch_tsne.py' 2026-06-04T15:31:19,727 adding 'omicverse/external/BINARY/Model.py' 2026-06-04T15:31:19,729 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-06-04T15:31:19,730 adding 'omicverse/external/BINARY/__init__.py' 2026-06-04T15:31:19,733 adding 'omicverse/external/BINARY/utils.py' 2026-06-04T15:31:19,735 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-06-04T15:31:19,737 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-06-04T15:31:19,741 adding 'omicverse/external/CAST/CAST_Stack.py' 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