2026-06-05T18:22:24,295 Created temporary directory: /tmp/pip-ephem-wheel-cache-j400hoee 2026-06-05T18:22:24,297 Created temporary directory: /tmp/pip-build-tracker-cspr1h87 2026-06-05T18:22:24,297 Initialized build tracking at /tmp/pip-build-tracker-cspr1h87 2026-06-05T18:22:24,298 Created build tracker: /tmp/pip-build-tracker-cspr1h87 2026-06-05T18:22:24,298 Entered build tracker: /tmp/pip-build-tracker-cspr1h87 2026-06-05T18:22:24,299 Created temporary directory: /tmp/pip-wheel-_i0qv6ud 2026-06-05T18:22:24,302 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-05T18:22:24,304 Created temporary directory: /tmp/pip-ephem-wheel-cache-pxc_d26l 2026-06-05T18:22:24,328 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-05T18:22:24,332 2 location(s) to search for versions of pytom-match-pick: 2026-06-05T18:22:24,332 * https://pypi.org/simple/pytom-match-pick/ 2026-06-05T18:22:24,332 * https://www.piwheels.org/simple/pytom-match-pick/ 2026-06-05T18:22:24,332 Fetching project page and analyzing links: https://pypi.org/simple/pytom-match-pick/ 2026-06-05T18:22:24,333 Getting page https://pypi.org/simple/pytom-match-pick/ 2026-06-05T18:22:24,334 Found index url https://pypi.org/simple 2026-06-05T18:22:24,560 Fetched page https://pypi.org/simple/pytom-match-pick/ as application/vnd.pypi.simple.v1+json 2026-06-05T18:22:24,568 Found link https://files.pythonhosted.org/packages/0b/50/a6e8fdbb4f4be7d7279346ce8fb6bf21d49cff13ea2d715e11b3d24def87/pytom-match-pick-0.4.3.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9), version: 0.4.3 2026-06-05T18:22:24,569 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/d6/23/65b9b159bb7ce397543c9a6c83cf588b155c1cd5118358a83a0dddbd9e3a/pytom_match_pick-0.4.3-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,570 Found link https://files.pythonhosted.org/packages/a9/98/b37b5169d6578a229cad35fd4a5ee9d7d7cfca67c0b0ad051f6e0679b325/pytom-match-pick-0.5.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9), version: 0.5.0 2026-06-05T18:22:24,571 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/77/6b/be3e904b90ef18f7d278bf93f342204825ebf626297fff0120b90c285def/pytom_match_pick-0.5.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,572 Found link https://files.pythonhosted.org/packages/27/c2/bf63df003e0bc960ae914788abdbfdc50b7f801dbe0bebb1236e0fd2a71c/pytom-match-pick-0.6.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9), version: 0.6.0 2026-06-05T18:22:24,573 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/cd/a4/9d13299f41e923277c5261898b88f793393f75e512d58509fc185a824828/pytom_match_pick-0.6.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,573 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/b3/14/7cf120f1678587bde0a854121312a9d4ca1eec5def50edff56eefeff2d42/pytom_match_pick-0.7.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,574 Found link https://files.pythonhosted.org/packages/0d/13/75f2a190e7434d5cc1b193139ed4e818a81d7a68b1388da188b248e0aa58/pytom_match_pick-0.7.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9), version: 0.7.0 2026-06-05T18:22:24,575 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/47/41/02ad9fdfbf3dfeb1530031e448fba60b28c13f15aa5663a138c138f8bac2/pytom_match_pick-0.7.1-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,576 Found link https://files.pythonhosted.org/packages/0d/a4/250695551905248a2ce2bf7a76cd69bfbe2ed80fee05e62ab13b5de941bd/pytom_match_pick-0.7.1.tar.gz (from 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https://files.pythonhosted.org/packages/dc/22/f37ede1560078567bab299973ffdb47dca195964f00bf51d738171580f90/pytom_match_pick-0.7.8.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.7.8 2026-06-05T18:22:24,580 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/7d/2c/ba4cf9c7d54dfa35619f9e69502ac6254cbd222089e0ca2168327ef5a0bd/pytom_match_pick-0.7.9-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2026-06-05T18:22:24,581 Found link https://files.pythonhosted.org/packages/c4/be/0c5d387b4a3abf34944d46e033e4e989e7dc337570738822d3520ff21379/pytom_match_pick-0.7.9.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.7.9 2026-06-05T18:22:24,581 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/93/1b/b42104dde349464c6e9fa413a3694aff98e957d782184d75c3eeb2f0a66f/pytom_match_pick-0.7.10-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2026-06-05T18:22:24,582 Found link https://files.pythonhosted.org/packages/29/65/a35d7764ed9f9605592005751dd1c7749f815f3f009c71c59eaac9a5f409/pytom_match_pick-0.7.10.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.7.10 2026-06-05T18:22:24,583 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/69/22/3c32fb46f689ee65dc64fc1eb9f39d14b28785224236ff758857a9ef1806/pytom_match_pick-0.7.11-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2026-06-05T18:22:24,584 Found link https://files.pythonhosted.org/packages/2e/f2/b23ed374e4256b1cabad9a5914bf5e4fdca8d0a3a7431867cda12b897621/pytom_match_pick-0.7.11.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.7.11 2026-06-05T18:22:24,585 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/7e/d5/adec8d12669829ef37648569d5f6997a2ea3ab1ff3e525bf7fe83b291cee/pytom_match_pick-0.8.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2026-06-05T18:22:24,586 Found link https://files.pythonhosted.org/packages/1e/b4/47edffa0d3c98612b5090be821c4a672a9e217ac47318615941301329965/pytom_match_pick-0.8.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.8.0 2026-06-05T18:22:24,587 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/95/f9/1cd133200aec75733b9091373ffa0570f42637dcf477fd545cc0848d8371/pytom_match_pick-0.9.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2026-06-05T18:22:24,588 Found link https://files.pythonhosted.org/packages/36/eb/10652a1e5c9d66922231978831c351bf21a0f815c0a4798fc41b48b970a1/pytom_match_pick-0.9.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.9.0 2026-06-05T18:22:24,589 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/ef/7d/f5eb0e6da88b7a73bea9e410cb8c798cfab7272a586f3c83fe6c661b9b2d/pytom_match_pick-0.10.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2026-06-05T18:22:24,589 Found link https://files.pythonhosted.org/packages/7a/21/ffe14c7369dcb3e4b6a3528d87a7db848184e7847ade39f04b0e318b5c45/pytom_match_pick-0.10.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.10.0 2026-06-05T18:22:24,590 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/06/60/6b7173e6087bd5ba2e96e1b0d33fef499e15393c7c386d4324af8a51b6a9/pytom_match_pick-0.11.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2026-06-05T18:22:24,591 Found link https://files.pythonhosted.org/packages/9a/b1/c2fec81e88d8f1b71b25e4b0a099bee6ddf369de023eb5bec375857d872d/pytom_match_pick-0.11.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.11.0 2026-06-05T18:22:24,591 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/0d/f7/11c1363049661abcd70765e29eb667e54f027271dd2e4cb1d289cb1d60a4/pytom_match_pick-0.11.1-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2026-06-05T18:22:24,592 Found link https://files.pythonhosted.org/packages/80/db/6d062fb6fb8652bd11d22fda1d5d2f98deb2a0b66eb65ae9abf4d1678164/pytom_match_pick-0.11.1.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.11.1 2026-06-05T18:22:24,593 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/d1/20/8a7a63294877a5cf0711a4098b1ebc712dccccf0ec2a58e74df4f3b8b9a3/pytom_match_pick-0.12.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2026-06-05T18:22:24,594 Found link https://files.pythonhosted.org/packages/88/5a/3ace00117d1b748bbd1a01824ed639fc7e139b26123f42f983b9973b8eb3/pytom_match_pick-0.12.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.12.0 2026-06-05T18:22:24,594 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/23/c1/176b09bc87aaa2fa99727d1118d5fb18bda759237a7b468930f4f57132fc/pytom_match_pick-0.12.1-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2026-06-05T18:22:24,595 Found link https://files.pythonhosted.org/packages/f5/78/70d02cb0b25aa7aca547888bd14aa6aa96ee4165d50070b1195cb055fe41/pytom_match_pick-0.12.1.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.12.1 2026-06-05T18:22:24,596 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/09/3e/fbb94bbde4fa755e5167d1f94ef7f1e9b2042ca3f18e2023794100b00576/pytom_match_pick-0.13.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2026-06-05T18:22:24,597 Found link https://files.pythonhosted.org/packages/c4/76/2eec0732913b08b04099ff44dfdecfd5370c820fb1b8215481cdbc71ccb1/pytom_match_pick-0.13.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.13.0 2026-06-05T18:22:24,598 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/a2/e0/d524455a2637c435dde4b4b18060c88559d4272693bce655a69156da1da7/pytom_match_pick-0.13.2-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2026-06-05T18:22:24,599 Found link https://files.pythonhosted.org/packages/81/41/89d36c0fc99dfeae840481433bc13d4c877bc6c50ece165316101676a377/pytom_match_pick-0.13.2.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.13.2 2026-06-05T18:22:24,600 Fetching project page and analyzing links: https://www.piwheels.org/simple/pytom-match-pick/ 2026-06-05T18:22:24,600 Getting page https://www.piwheels.org/simple/pytom-match-pick/ 2026-06-05T18:22:24,601 Found index url https://www.piwheels.org/simple 2026-06-05T18:22:24,782 Fetched page https://www.piwheels.org/simple/pytom-match-pick/ as text/html 2026-06-05T18:22:24,788 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.13.0-py3-none-any.whl#sha256=10077e954ad619cba24be67614d5dc67fa53c29d4679fdfdb2f890b11bb8e497 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2026-06-05T18:22:24,788 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.12.1-py3-none-any.whl#sha256=8e8a0066378ebf6fd114c5aa826ee1fb89bda3c7993e590d15b024684735ab8c (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2026-06-05T18:22:24,789 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.12.0-py3-none-any.whl#sha256=493a8f47e01e5997ece45c04f911aefb36978a88016bd5318000f8f6427b8a35 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2026-06-05T18:22:24,789 Skipping link: No binaries permitted for pytom-match-pick: 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https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.10-py3-none-any.whl#sha256=1183393d6aed62cde728d37b90414042b27ba82dd790df84f6979e3365e08fe8 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2026-06-05T18:22:24,794 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.9-py3-none-any.whl#sha256=639e02b69aeec2003b13859cca7e0507b6caf80c313d7c42f91b442c3ce4b309 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2026-06-05T18:22:24,794 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.8-py3-none-any.whl#sha256=9a98212565828f7fca31fcd28d027d1fcb33254fee47991168ab354d240e22b6 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2026-06-05T18:22:24,795 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.2-py3-none-any.whl#sha256=3db888a58c6dd08f07f4c785bd0f06910b7dfd23843b96a96e90a53597fe9b81 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,796 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.1-py3-none-any.whl#sha256=2d8c4573029bbf0c16a1bb6d747c8131ac8e8c2f6f87ae7c94ff5f5271a43a16 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,796 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.0-py3-none-any.whl#sha256=a252bdbc4e0df9a4417b30e3a0f8a1d894feb7ce0f106717dd019fbfff9eed43 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,796 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.6.0-py3-none-any.whl#sha256=e37348bec06b4b7a2f06b2904dba5cfc3485a84dfbfb73a61ab9c49dbe60aa08 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,797 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.5.0-py3-none-any.whl#sha256=929ad4bcee62521a0e83bc99688468940d4a6fcf362c71a9c8d14320e0f1ba0c (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,797 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.4.3-py3-none-any.whl#sha256=69aeea6091ab5fb0f7e1a58bfe86631c6c71e95d296b7e55b12701cc1fd02e7a (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2026-06-05T18:22:24,798 Skipping link: not a file: https://www.piwheels.org/simple/pytom-match-pick/ 2026-06-05T18:22:24,798 Skipping link: not a file: https://pypi.org/simple/pytom-match-pick/ 2026-06-05T18:22:24,819 Given no hashes to check 1 links for project 'pytom-match-pick': discarding no candidates 2026-06-05T18:22:24,837 Collecting pytom-match-pick==0.13.2 2026-06-05T18:22:24,839 Created temporary directory: /tmp/pip-unpack-i_07j92f 2026-06-05T18:22:25,066 Downloading pytom_match_pick-0.13.2.tar.gz (103 kB) 2026-06-05T18:22:25,241 Added pytom-match-pick==0.13.2 from https://files.pythonhosted.org/packages/81/41/89d36c0fc99dfeae840481433bc13d4c877bc6c50ece165316101676a377/pytom_match_pick-0.13.2.tar.gz to build tracker '/tmp/pip-build-tracker-cspr1h87' 2026-06-05T18:22:25,246 Created temporary directory: /tmp/pip-build-env-t2021gph 2026-06-05T18:22:25,251 Installing build dependencies: started 2026-06-05T18:22:25,252 Running command pip subprocess to install build dependencies 2026-06-05T18:22:26,414 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-05T18:22:26,851 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-05T18:22:26,874 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-05T18:22:28,654 Collecting setuptools 2026-06-05T18:22:28,655 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-05T18:22:28,669 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-05T18:22:28,926 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-05T18:22:29,032 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-05T18:22:31,762 Installing collected packages: setuptools 2026-06-05T18:22:34,828 Successfully installed setuptools-82.0.1 2026-06-05T18:22:35,102 Installing build dependencies: finished with status 'done' 2026-06-05T18:22:35,109 Getting requirements to build wheel: started 2026-06-05T18:22:35,110 Running command Getting requirements to build wheel 2026-06-05T18:22:35,717 `pytom_tm.entry_points:estimate_roc [plotting]` - using extras for entry points is not recommended 2026-06-05T18:22:35,722 /tmp/pip-build-env-t2021gph/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-05T18:22:35,722 !! 2026-06-05T18:22:35,723 ******************************************************************************** 2026-06-05T18:22:35,724 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-05T18:22:35,725 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-05T18:22:35,726 or your builds will no longer be supported. 2026-06-05T18:22:35,727 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-05T18:22:35,727 ******************************************************************************** 2026-06-05T18:22:35,728 !! 2026-06-05T18:22:35,729 corresp(dist, value, root_dir) 2026-06-05T18:22:35,805 /tmp/pip-build-env-t2021gph/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-05T18:22:35,805 !! 2026-06-05T18:22:35,807 ******************************************************************************** 2026-06-05T18:22:35,807 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-05T18:22:35,808 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2026-06-05T18:22:35,810 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-05T18:22:35,810 ******************************************************************************** 2026-06-05T18:22:35,811 !! 2026-06-05T18:22:35,812 dist._finalize_license_expression() 2026-06-05T18:22:35,813 /tmp/pip-build-env-t2021gph/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-05T18:22:35,813 !! 2026-06-05T18:22:35,814 ******************************************************************************** 2026-06-05T18:22:35,815 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-05T18:22:35,816 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2026-06-05T18:22:35,818 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-05T18:22:35,818 ******************************************************************************** 2026-06-05T18:22:35,820 !! 2026-06-05T18:22:35,820 self._finalize_license_expression() 2026-06-05T18:22:35,821 running egg_info 2026-06-05T18:22:35,825 writing src/pytom_match_pick.egg-info/PKG-INFO 2026-06-05T18:22:35,832 writing dependency_links to src/pytom_match_pick.egg-info/dependency_links.txt 2026-06-05T18:22:35,834 writing entry points to src/pytom_match_pick.egg-info/entry_points.txt 2026-06-05T18:22:35,836 writing requirements to src/pytom_match_pick.egg-info/requires.txt 2026-06-05T18:22:35,838 writing top-level names to src/pytom_match_pick.egg-info/top_level.txt 2026-06-05T18:22:35,858 reading manifest file 'src/pytom_match_pick.egg-info/SOURCES.txt' 2026-06-05T18:22:35,862 reading manifest template 'MANIFEST.in' 2026-06-05T18:22:35,863 adding license file 'LICENSE' 2026-06-05T18:22:35,867 writing manifest file 'src/pytom_match_pick.egg-info/SOURCES.txt' 2026-06-05T18:22:35,966 Getting requirements to build wheel: finished with status 'done' 2026-06-05T18:22:35,969 Created temporary directory: /tmp/pip-modern-metadata-60dikubu 2026-06-05T18:22:35,971 Preparing metadata (pyproject.toml): started 2026-06-05T18:22:35,972 Running command Preparing metadata (pyproject.toml) 2026-06-05T18:22:36,527 `pytom_tm.entry_points:estimate_roc [plotting]` - using extras for entry points is not recommended 2026-06-05T18:22:36,532 /tmp/pip-build-env-t2021gph/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-05T18:22:36,532 !! 2026-06-05T18:22:36,534 ******************************************************************************** 2026-06-05T18:22:36,534 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-05T18:22:36,535 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-05T18:22:36,536 or your builds will no longer be supported. 2026-06-05T18:22:36,537 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-05T18:22:36,538 ******************************************************************************** 2026-06-05T18:22:36,539 !! 2026-06-05T18:22:36,539 corresp(dist, value, root_dir) 2026-06-05T18:22:36,609 /tmp/pip-build-env-t2021gph/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-05T18:22:36,610 !! 2026-06-05T18:22:36,611 ******************************************************************************** 2026-06-05T18:22:36,612 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-05T18:22:36,613 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2026-06-05T18:22:36,614 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-05T18:22:36,615 ******************************************************************************** 2026-06-05T18:22:36,616 !! 2026-06-05T18:22:36,616 dist._finalize_license_expression() 2026-06-05T18:22:36,617 /tmp/pip-build-env-t2021gph/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-05T18:22:36,618 !! 2026-06-05T18:22:36,619 ******************************************************************************** 2026-06-05T18:22:36,620 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-05T18:22:36,621 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2026-06-05T18:22:36,622 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-05T18:22:36,623 ******************************************************************************** 2026-06-05T18:22:36,624 !! 2026-06-05T18:22:36,625 self._finalize_license_expression() 2026-06-05T18:22:36,625 running dist_info 2026-06-05T18:22:36,632 creating /tmp/pip-modern-metadata-60dikubu/pytom_match_pick.egg-info 2026-06-05T18:22:36,632 writing /tmp/pip-modern-metadata-60dikubu/pytom_match_pick.egg-info/PKG-INFO 2026-06-05T18:22:36,639 writing dependency_links to /tmp/pip-modern-metadata-60dikubu/pytom_match_pick.egg-info/dependency_links.txt 2026-06-05T18:22:36,641 writing entry points to /tmp/pip-modern-metadata-60dikubu/pytom_match_pick.egg-info/entry_points.txt 2026-06-05T18:22:36,644 writing requirements to /tmp/pip-modern-metadata-60dikubu/pytom_match_pick.egg-info/requires.txt 2026-06-05T18:22:36,645 writing top-level names to /tmp/pip-modern-metadata-60dikubu/pytom_match_pick.egg-info/top_level.txt 2026-06-05T18:22:36,646 writing manifest file '/tmp/pip-modern-metadata-60dikubu/pytom_match_pick.egg-info/SOURCES.txt' 2026-06-05T18:22:36,664 reading manifest file '/tmp/pip-modern-metadata-60dikubu/pytom_match_pick.egg-info/SOURCES.txt' 2026-06-05T18:22:36,666 reading manifest template 'MANIFEST.in' 2026-06-05T18:22:36,667 adding license file 'LICENSE' 2026-06-05T18:22:36,670 writing manifest file '/tmp/pip-modern-metadata-60dikubu/pytom_match_pick.egg-info/SOURCES.txt' 2026-06-05T18:22:36,671 creating '/tmp/pip-modern-metadata-60dikubu/pytom_match_pick-0.13.2.dist-info' 2026-06-05T18:22:36,803 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-05T18:22:36,811 Source in /tmp/pip-wheel-_i0qv6ud/pytom-match-pick_fe0dd2d3ee364837bdda8e97e1242491 has version 0.13.2, which satisfies requirement pytom-match-pick==0.13.2 from https://files.pythonhosted.org/packages/81/41/89d36c0fc99dfeae840481433bc13d4c877bc6c50ece165316101676a377/pytom_match_pick-0.13.2.tar.gz 2026-06-05T18:22:36,812 Removed pytom-match-pick==0.13.2 from https://files.pythonhosted.org/packages/81/41/89d36c0fc99dfeae840481433bc13d4c877bc6c50ece165316101676a377/pytom_match_pick-0.13.2.tar.gz from build tracker '/tmp/pip-build-tracker-cspr1h87' 2026-06-05T18:22:36,826 Created temporary directory: /tmp/pip-unpack-4u849dza 2026-06-05T18:22:36,826 Building wheels for collected packages: pytom-match-pick 2026-06-05T18:22:36,832 Created temporary directory: /tmp/pip-wheel-e4n4zaug 2026-06-05T18:22:36,832 Destination directory: /tmp/pip-wheel-e4n4zaug 2026-06-05T18:22:36,835 Building wheel for pytom-match-pick (pyproject.toml): started 2026-06-05T18:22:36,836 Running command Building wheel for pytom-match-pick (pyproject.toml) 2026-06-05T18:22:37,390 `pytom_tm.entry_points:estimate_roc [plotting]` - using extras for entry points is not recommended 2026-06-05T18:22:37,394 /tmp/pip-build-env-t2021gph/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-05T18:22:37,395 !! 2026-06-05T18:22:37,396 ******************************************************************************** 2026-06-05T18:22:37,397 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-05T18:22:37,398 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-05T18:22:37,398 or your builds will no longer be supported. 2026-06-05T18:22:37,400 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-05T18:22:37,400 ******************************************************************************** 2026-06-05T18:22:37,401 !! 2026-06-05T18:22:37,402 corresp(dist, value, root_dir) 2026-06-05T18:22:37,466 /tmp/pip-build-env-t2021gph/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-05T18:22:37,467 !! 2026-06-05T18:22:37,468 ******************************************************************************** 2026-06-05T18:22:37,469 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-05T18:22:37,470 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2026-06-05T18:22:37,471 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-05T18:22:37,471 ******************************************************************************** 2026-06-05T18:22:37,472 !! 2026-06-05T18:22:37,473 dist._finalize_license_expression() 2026-06-05T18:22:37,473 /tmp/pip-build-env-t2021gph/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-05T18:22:37,474 !! 2026-06-05T18:22:37,475 ******************************************************************************** 2026-06-05T18:22:37,475 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-05T18:22:37,476 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2026-06-05T18:22:37,477 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-05T18:22:37,478 ******************************************************************************** 2026-06-05T18:22:37,479 !! 2026-06-05T18:22:37,479 self._finalize_license_expression() 2026-06-05T18:22:37,479 running bdist_wheel 2026-06-05T18:22:37,493 running build 2026-06-05T18:22:37,493 running build_py 2026-06-05T18:22:37,499 creating build/lib/pytom_tm 2026-06-05T18:22:37,501 copying src/pytom_tm/utils.py -> build/lib/pytom_tm 2026-06-05T18:22:37,503 copying src/pytom_tm/matching.py -> build/lib/pytom_tm 2026-06-05T18:22:37,506 copying src/pytom_tm/entry_points.py -> build/lib/pytom_tm 2026-06-05T18:22:37,509 copying src/pytom_tm/template.py -> build/lib/pytom_tm 2026-06-05T18:22:37,511 copying src/pytom_tm/dataclass.py -> build/lib/pytom_tm 2026-06-05T18:22:37,513 copying src/pytom_tm/parallel.py -> build/lib/pytom_tm 2026-06-05T18:22:37,516 copying src/pytom_tm/correlation.py -> build/lib/pytom_tm 2026-06-05T18:22:37,518 copying src/pytom_tm/plotting.py -> build/lib/pytom_tm 2026-06-05T18:22:37,520 copying src/pytom_tm/merge_stars.py -> build/lib/pytom_tm 2026-06-05T18:22:37,522 copying src/pytom_tm/extract.py -> build/lib/pytom_tm 2026-06-05T18:22:37,525 copying src/pytom_tm/mask.py -> build/lib/pytom_tm 2026-06-05T18:22:37,527 copying src/pytom_tm/__init__.py -> build/lib/pytom_tm 2026-06-05T18:22:37,529 copying src/pytom_tm/angles.py -> build/lib/pytom_tm 2026-06-05T18:22:37,531 copying src/pytom_tm/tmjob.py -> build/lib/pytom_tm 2026-06-05T18:22:37,534 copying src/pytom_tm/weights.py -> build/lib/pytom_tm 2026-06-05T18:22:37,537 copying src/pytom_tm/json.py -> build/lib/pytom_tm 2026-06-05T18:22:37,538 copying src/pytom_tm/io.py -> build/lib/pytom_tm 2026-06-05T18:22:37,541 running egg_info 2026-06-05T18:22:37,550 writing src/pytom_match_pick.egg-info/PKG-INFO 2026-06-05T18:22:37,556 writing dependency_links to src/pytom_match_pick.egg-info/dependency_links.txt 2026-06-05T18:22:37,558 writing entry points to src/pytom_match_pick.egg-info/entry_points.txt 2026-06-05T18:22:37,560 writing requirements to src/pytom_match_pick.egg-info/requires.txt 2026-06-05T18:22:37,561 writing top-level names to src/pytom_match_pick.egg-info/top_level.txt 2026-06-05T18:22:37,571 reading manifest file 'src/pytom_match_pick.egg-info/SOURCES.txt' 2026-06-05T18:22:37,575 reading manifest template 'MANIFEST.in' 2026-06-05T18:22:37,576 adding license file 'LICENSE' 2026-06-05T18:22:37,580 writing manifest file 'src/pytom_match_pick.egg-info/SOURCES.txt' 2026-06-05T18:22:37,592 installing to build/bdist.linux-armv7l/wheel 2026-06-05T18:22:37,592 running install 2026-06-05T18:22:37,615 running install_lib 2026-06-05T18:22:37,620 creating build/bdist.linux-armv7l/wheel 2026-06-05T18:22:37,623 creating build/bdist.linux-armv7l/wheel/pytom_tm 2026-06-05T18:22:37,624 copying build/lib/pytom_tm/utils.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,626 copying build/lib/pytom_tm/matching.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,628 copying build/lib/pytom_tm/entry_points.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,631 copying build/lib/pytom_tm/template.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,633 copying build/lib/pytom_tm/dataclass.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,635 copying build/lib/pytom_tm/parallel.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,638 copying build/lib/pytom_tm/correlation.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,639 copying build/lib/pytom_tm/plotting.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,642 copying build/lib/pytom_tm/merge_stars.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,643 copying build/lib/pytom_tm/extract.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,646 copying build/lib/pytom_tm/mask.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,648 copying build/lib/pytom_tm/__init__.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,649 copying build/lib/pytom_tm/angles.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,652 copying build/lib/pytom_tm/tmjob.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,655 copying build/lib/pytom_tm/weights.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,657 copying build/lib/pytom_tm/json.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,659 copying build/lib/pytom_tm/io.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2026-06-05T18:22:37,662 running install_egg_info 2026-06-05T18:22:37,667 Copying src/pytom_match_pick.egg-info to build/bdist.linux-armv7l/wheel/./pytom_match_pick-0.13.2-py3.11.egg-info 2026-06-05T18:22:37,678 running install_scripts 2026-06-05T18:22:37,691 creating build/bdist.linux-armv7l/wheel/pytom_match_pick-0.13.2.dist-info/WHEEL 2026-06-05T18:22:37,694 creating '/tmp/pip-wheel-e4n4zaug/.tmp-yi0fle01/pytom_match_pick-0.13.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-05T18:22:37,699 adding 'pytom_match_pick-0.13.2.dist-info/licenses/LICENSE' 2026-06-05T18:22:37,701 adding 'pytom_tm/__init__.py' 2026-06-05T18:22:37,702 adding 'pytom_tm/angles.py' 2026-06-05T18:22:37,704 adding 'pytom_tm/correlation.py' 2026-06-05T18:22:37,705 adding 'pytom_tm/dataclass.py' 2026-06-05T18:22:37,710 adding 'pytom_tm/entry_points.py' 2026-06-05T18:22:37,713 adding 'pytom_tm/extract.py' 2026-06-05T18:22:37,716 adding 'pytom_tm/io.py' 2026-06-05T18:22:37,717 adding 'pytom_tm/json.py' 2026-06-05T18:22:37,719 adding 'pytom_tm/mask.py' 2026-06-05T18:22:37,721 adding 'pytom_tm/matching.py' 2026-06-05T18:22:37,723 adding 'pytom_tm/merge_stars.py' 2026-06-05T18:22:37,725 adding 'pytom_tm/parallel.py' 2026-06-05T18:22:37,727 adding 'pytom_tm/plotting.py' 2026-06-05T18:22:37,729 adding 'pytom_tm/template.py' 2026-06-05T18:22:37,734 adding 'pytom_tm/tmjob.py' 2026-06-05T18:22:37,735 adding 'pytom_tm/utils.py' 2026-06-05T18:22:37,738 adding 'pytom_tm/weights.py' 2026-06-05T18:22:37,743 adding 'pytom_match_pick-0.13.2.dist-info/METADATA' 2026-06-05T18:22:37,745 adding 'pytom_match_pick-0.13.2.dist-info/WHEEL' 2026-06-05T18:22:37,746 adding 'pytom_match_pick-0.13.2.dist-info/entry_points.txt' 2026-06-05T18:22:37,747 adding 'pytom_match_pick-0.13.2.dist-info/top_level.txt' 2026-06-05T18:22:37,748 adding 'pytom_match_pick-0.13.2.dist-info/RECORD' 2026-06-05T18:22:37,794 removing build/bdist.linux-armv7l/wheel 2026-06-05T18:22:37,900 Building wheel for pytom-match-pick (pyproject.toml): finished with status 'done' 2026-06-05T18:22:37,906 Created wheel for pytom-match-pick: filename=pytom_match_pick-0.13.2-py3-none-any.whl size=80172 sha256=248adda258c887d4547472e734e3391574f4fb1d74601202a452ad36595cda5d 2026-06-05T18:22:37,907 Stored in directory: /tmp/pip-ephem-wheel-cache-pxc_d26l/wheels/37/af/7a/a23ae26600fcfe6d8e5a0b3e98d67d778c0c281397f664a7d9 2026-06-05T18:22:37,931 Successfully built pytom-match-pick 2026-06-05T18:22:37,936 Removed build tracker: '/tmp/pip-build-tracker-cspr1h87'