2026-06-07T04:30:12,299 Created temporary directory: /tmp/pip-ephem-wheel-cache-k3i9fojt 2026-06-07T04:30:12,301 Created temporary directory: /tmp/pip-build-tracker-ugpovj_0 2026-06-07T04:30:12,302 Initialized build tracking at /tmp/pip-build-tracker-ugpovj_0 2026-06-07T04:30:12,302 Created build tracker: /tmp/pip-build-tracker-ugpovj_0 2026-06-07T04:30:12,303 Entered build tracker: /tmp/pip-build-tracker-ugpovj_0 2026-06-07T04:30:12,303 Created temporary directory: /tmp/pip-wheel-5zm8u0xf 2026-06-07T04:30:12,306 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-07T04:30:12,309 Created temporary directory: /tmp/pip-ephem-wheel-cache-jshqm4ac 2026-06-07T04:30:12,333 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-07T04:30:12,337 2 location(s) to search for versions of galaxy-app: 2026-06-07T04:30:12,337 * https://pypi.org/simple/galaxy-app/ 2026-06-07T04:30:12,337 * https://www.piwheels.org/simple/galaxy-app/ 2026-06-07T04:30:12,338 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2026-06-07T04:30:12,339 Getting page https://pypi.org/simple/galaxy-app/ 2026-06-07T04:30:12,340 Found index url https://pypi.org/simple 2026-06-07T04:30:12,565 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2026-06-07T04:30:12,580 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0 2026-06-07T04:30:12,581 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2026-06-07T04:30:12,581 Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0 2026-06-07T04:30:12,582 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2026-06-07T04:30:12,583 Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0 2026-06-07T04:30:12,583 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2026-06-07T04:30:12,584 Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1 2026-06-07T04:30:12,585 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2026-06-07T04:30:12,586 Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1 2026-06-07T04:30:12,587 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,588 Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2 2026-06-07T04:30:12,589 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,590 Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3 2026-06-07T04:30:12,590 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,591 Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4 2026-06-07T04:30:12,592 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,592 Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5 2026-06-07T04:30:12,593 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,594 Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6 2026-06-07T04:30:12,595 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,596 Found link https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.dev0 2026-06-07T04:30:12,597 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7a/89/50a4575db66b638bee6f241f902f556eaa27855d7f0fd3323551bdb09f5d/galaxy_app-23.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,598 Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1 2026-06-07T04:30:12,598 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,599 Found link https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.2 2026-06-07T04:30:12,600 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/54/ef/8264cbce6eca0cd434001d62c838cd4798aa478a6af7879b83299c28193d/galaxy_app-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,601 Found link https://files.pythonhosted.org/packages/26/ba/0995031cda92688ec41ab4ad0cc11b148fd5caecf21e414928464bea82f8/galaxy-app-23.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.3 2026-06-07T04:30:12,602 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/03/0f/747509841f1baad002247bb2956344ce1ebb9703ab941c149f5456b32c31/galaxy_app-23.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,603 Found link https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.4 2026-06-07T04:30:12,603 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/60/97/43d48dc8d2d332faab8a4439b68c7cbbd528f7b9d48c8a0092d60cc5124d/galaxy_app-23.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,604 Found link https://files.pythonhosted.org/packages/2f/6c/b024d7c86132a8926709338c49bef02ac75821d997e60030744cf4e65ed0/galaxy-app-23.2.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.2.1 2026-06-07T04:30:12,605 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/b9/89/c6d435aa81c1e8bfc9a11ffe2ce1212d1f7251be748aa684ad150a337b25/galaxy_app-23.2.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,606 Found link https://files.pythonhosted.org/packages/10/8a/8722621711150c5522028ae4f5ecd1a7e12cd7e430a6b9cf2f8f4d1ff409/galaxy-app-24.0.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.0 2026-06-07T04:30:12,606 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/23/72/37370b092b6ea34491efdb854990cba6068b4a3b6eef26947c2ab1274f69/galaxy_app-24.0.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,607 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/8a/2b/e66673f317e13ca426074d88f5180a2836f281f3c292275db2fdb44d15fe/galaxy_app-24.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,608 Found link https://files.pythonhosted.org/packages/1b/a9/861c3fdb557700065a00872db1752b8f4797de95325630397f96c99146bd/galaxy_app-24.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.1 2026-06-07T04:30:12,609 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0a/a5/2c0d3d616a72e3ee35b36a3aa9d449b8c174fc181a993c01d4078e6443b1/galaxy_app-24.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,610 Found link https://files.pythonhosted.org/packages/31/53/8f944700770dbafae351efe5557d476c3ad478f8dddb0cf8c0e5d0269bd8/galaxy_app-24.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.2 2026-06-07T04:30:12,610 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e7/44/e5c37f7ebac240ff67705b771890f8741a1f3ab6d6096e4413f44c690230/galaxy_app-24.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,611 Found link https://files.pythonhosted.org/packages/b6/50/b2598fe6756e78bbb2d4d816b17700ebbda5a18099a99676d7a882b23973/galaxy_app-24.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.3 2026-06-07T04:30:12,612 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/89/19/1e93f18d2569aa1adde55049c082b526dec915ec5fd97c2ee1a00bd27230/galaxy_app-24.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,613 Found link https://files.pythonhosted.org/packages/cc/bf/be693f715cd1f196126e60b1a1b1b355a3297e210b05f17579beef281993/galaxy_app-24.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.1.1 2026-06-07T04:30:12,614 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d8/c1/b6cec59ac7108dcb29f1c5756a78d971843e5cfecd20bef05d1227cf7734/galaxy_app-24.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,615 Found link https://files.pythonhosted.org/packages/81/85/d832b99803e29032ecc4a8ebd7e51bf9a8dcb74fb59b4ef7f0e11afd24ea/galaxy_app-24.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.1.2 2026-06-07T04:30:12,615 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c9/64/fd91cb66e72c0944bbb6749845fbac0dcafbe7d06817cc9f6d589542272c/galaxy_app-24.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,616 Found link https://files.pythonhosted.org/packages/3f/f9/388b4f0a3ff32d17ebfe506b940f4579d6027f7b71d40f2f9c4c3c5b707f/galaxy_app-24.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.1.3 2026-06-07T04:30:12,617 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/27/ccfa155f5e9a636ffe6fb96315d5bc160a6d4bc3d6896ed957b4e5c90db1/galaxy_app-24.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,617 Found link https://files.pythonhosted.org/packages/89/6f/d18408cc47a4878e9ff3eb3cc00d73790363f87ae628bbba7292fb11114c/galaxy_app-24.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.1.4 2026-06-07T04:30:12,618 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/66/b7/6a65ad0e20898593d3f4d48ccf7505761b6c6e3f9f347eef305818130a62/galaxy_app-24.2.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,619 Found link https://files.pythonhosted.org/packages/96/89/cfdfa35327677a6e58d7d8ef87f692a4f5e302129514e509d4b82ca79c40/galaxy_app-24.2.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.2.0 2026-06-07T04:30:12,620 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/64/d4/11ad7dd636965631c14d0a6778b36bcd6fd307e117383fa312156deb2c00/galaxy_app-24.2.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,621 Found link https://files.pythonhosted.org/packages/f6/b2/936c1e4204c79c17c1580eeb094193faf78de1940aa022b71b443d8368d7/galaxy_app-24.2.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.2.1 2026-06-07T04:30:12,622 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/55/34/0090029fccb2f6337b2ab37bbdc9d7e6bf7f6f6a75a936cbb8bf11228589/galaxy_app-24.2.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,623 Found link https://files.pythonhosted.org/packages/88/db/d924fca9afc8e5c39f5f7b8ce140ac5e4ee059e1b30b964c73237cdc22c5/galaxy_app-24.2.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.2.2 2026-06-07T04:30:12,623 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2c/af/1a619ccd5253e4b74d5c3cb5be010a12903b95d149400200e7e33f23d60a/galaxy_app-24.2.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,624 Found link https://files.pythonhosted.org/packages/a0/8c/97e2df423aa9000df8cf2204403565032fe567e8fd8b010dd1f2a26175aa/galaxy_app-24.2.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.2.3 2026-06-07T04:30:12,625 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/4e/3c/9c67b8f756a8e58d99a515e0f188aed271f225a89f8866f6719c0aa7189b/galaxy_app-24.2.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,626 Found link https://files.pythonhosted.org/packages/4e/3b/ab0a14874d86144bf33681164f1f398c0a2f09c141f672bad64030497186/galaxy_app-24.2.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.2.4 2026-06-07T04:30:12,627 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/21/c0/83ca0cee2dd293e1a8869d2ac651ceac0d628885d23f61445ba85a97a83a/galaxy_app-25.0.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,628 Found link https://files.pythonhosted.org/packages/48/3c/a7a6b46d66a7df9d5cd50fd41f917b1b253cb6142fb5518aa08bb4d4c219/galaxy_app-25.0.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.0 2026-06-07T04:30:12,628 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c0/79/e094854938d7876ca802171004906037e87f0917579e98d92e640e56d87d/galaxy_app-25.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,629 Found link https://files.pythonhosted.org/packages/0c/5f/ce1d6de7695af88af142e23571c54fae681092a0dfa38edea5046682e67a/galaxy_app-25.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.1 2026-06-07T04:30:12,630 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/9a/54/07919f089225f319e85643152c58d577fc01d0e568cb9110cf434ca5b4ee/galaxy_app-25.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,631 Found link https://files.pythonhosted.org/packages/53/9c/8d5cdb3013e508ef0c76b277ba5e1695e4d430bd04156f97977cb7895488/galaxy_app-25.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.2 2026-06-07T04:30:12,631 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/ff/e5/d8a099afeecad5902fcb02320137c1abc050befa10d53e45861d7f984aaf/galaxy_app-25.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,632 Found link https://files.pythonhosted.org/packages/73/3e/df92e253e067efb5d36c0b31c0adc0cff9d417cebe10e87c17df702f92a9/galaxy_app-25.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.3 2026-06-07T04:30:12,633 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/79/de/90757d51467b4fb3834f2fb2ebf9781d28060fe19aec53465216c01f606b/galaxy_app-25.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,634 Found link https://files.pythonhosted.org/packages/66/ad/5c2f9df1f257e9630a000bb154271e4d681f2b90bec2bd242782e127fcdf/galaxy_app-25.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.4 2026-06-07T04:30:12,634 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/cb/4d/fa2a56f4958bf22a88998a1ab0d85c0d78082956b921eb6f0559f943d373/galaxy_app-25.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,635 Found link https://files.pythonhosted.org/packages/84/c1/ad38ac89ae8245180b76113b4c3086dd4da22d4094e752fb5a1f9fba8425/galaxy_app-25.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.dev0 2026-06-07T04:30:12,636 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d3/48/39f108b5edd2537999e65765e3c7c79e8d2a0ffccc33033e04ccf5c0f61d/galaxy_app-25.1.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,637 Found link https://files.pythonhosted.org/packages/da/d5/995e5c17d2321d004186b2d3ca2f3f72f22effa774117ea51150ed7eb78e/galaxy_app-25.1.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.0 2026-06-07T04:30:12,638 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/51/7f/a5520e446153a7ffe588d08a9808da189ffce5a6a1bc7c46e62fc2880754/galaxy_app-25.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,639 Found link https://files.pythonhosted.org/packages/45/a7/76ba5e233d7828531073073b9a2491137b4420e536537ba5b410aef1ab44/galaxy_app-25.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.1 2026-06-07T04:30:12,639 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/b7/01/4fd550fb22b85840cf3741fd99fa631724dd956ad66d2e17c7c408abbc4f/galaxy_app-25.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,640 Found link https://files.pythonhosted.org/packages/3c/7e/ef85205d291604410e6b45db4ff424961aa98be054f7a206b8533b6d4921/galaxy_app-25.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.2 2026-06-07T04:30:12,640 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/4f/96/f6b2bea3a7004a8866cb2cb5d40be5250892e15ec6ce10ebe754673b47f5/galaxy_app-26.0.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10) 2026-06-07T04:30:12,641 Found link https://files.pythonhosted.org/packages/8e/84/bd6529fea5148bbbdfbcc1afb65377da833e8f2b95860e7d14c99797e940/galaxy_app-26.0.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10), version: 26.0.0 2026-06-07T04:30:12,642 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/53/1f/b8eb5d528c90596bdd2fb45770609f6c6fb4c629ef28b46f60479a6a23f6/galaxy_app-26.0.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10) 2026-06-07T04:30:12,643 Found link https://files.pythonhosted.org/packages/af/f3/9561be7203df96d03afc724f1e80d812b809b19f685574efe14353a4412b/galaxy_app-26.0.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10), version: 26.0.1.dev0 2026-06-07T04:30:12,644 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e5/b9/c45941834e7a260175a64964c10ffa4a94b5f41ff35fefec1fa38c569aaa/galaxy_app-26.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10) 2026-06-07T04:30:12,645 Found link https://files.pythonhosted.org/packages/4f/44/2355a6711bfd0a575e95784cf12b2aa15397ef6b06a83e6de15070f34596/galaxy_app-26.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10), version: 26.0.1 2026-06-07T04:30:12,645 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2026-06-07T04:30:12,646 Getting page https://www.piwheels.org/simple/galaxy-app/ 2026-06-07T04:30:12,647 Found index url https://www.piwheels.org/simple 2026-06-07T04:30:12,818 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2026-06-07T04:30:12,829 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-26.0.1.dev0-py3-none-any.whl#sha256=1b57cc3296769632a41856c87f6cbe5fff89e374e1c8eb6af4d3a36f1047a136 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.10) 2026-06-07T04:30:12,830 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-26.0.0-py3-none-any.whl#sha256=3321491bab9e12b390f21d17aea8ac7c9af3106990a740fdf5f64617c74515a3 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.10) 2026-06-07T04:30:12,831 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.1.2-py3-none-any.whl#sha256=6c64b157b588d45d53b6afa96644e7f3cfd9f2cd56ef5c9cb440e757a74d190e (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,831 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.1.1-py3-none-any.whl#sha256=e36d461cfc8d19044d4e0caf045c4e61f456cad83d7ffdf251cf5950adaa57a8 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,832 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.1.0-py3-none-any.whl#sha256=c29efe70b9321aabf3211b8d2989ffcd791cf8f68f30e2b1bec4deac58d3afca (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,832 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.1.dev0-py3-none-any.whl#sha256=61192b47a8f5aa09dfa50eab6cc409838da6a6c65b1bc2362ee8b549a053800d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,833 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.0.4-py3-none-any.whl#sha256=40c9bde9c5eb59f49ac82777c9bede1957b6314d53817cd0f36aa3b06711c6c5 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,833 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.0.3-py3-none-any.whl#sha256=dda69dddcadfe72dd1cbe1bf11446f4b3570ebdceb35e31de9c036bc7bdd22d4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,834 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.0.2-py3-none-any.whl#sha256=1e3f189cee180e2fb5873cfebb1a4a809f2ee29b3ab97d58f8dd4cec10c58f88 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,834 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.0.1-py3-none-any.whl#sha256=db65704931391b255be6095318fcea22959466ef8c965457afd4c1772a310ce2 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,835 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.0.0-py3-none-any.whl#sha256=cd1b1be2caf5332d4378212d6ca6e225b967ea44c56934a31156ebb75a2d3bea (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-06-07T04:30:12,835 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.4-py3-none-any.whl#sha256=b96734c33f37549375a1182d6741d5e83f6a48278f7bed5f8e0787ebcbf34cdd (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,836 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.3-py3-none-any.whl#sha256=373716c96daa1d0dc823f50d551219ca741bf4aecfa380db3ef347187be5a00a (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,837 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.2-py3-none-any.whl#sha256=36ba4ccf54fdb4c04dc46adb0f70984791249b66910bcbf8b2a0ca41df63d39c (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,837 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.1-py3-none-any.whl#sha256=4a8c43f9cae74af9636804938246b7ef0488620cdcce169c330249be5193bb0b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,838 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.0-py3-none-any.whl#sha256=64971bd4e8876dc59ecb49efbee5fea530d88dcbaadaa1dead7714ced5380189 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,839 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.1.4-py3-none-any.whl#sha256=cc8b47f50e7e1ef64ad4be5ba8c37c941d8b01fc3f4960be4c54f218d986df92 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,839 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.1.3-py3-none-any.whl#sha256=f54a29e6e7a2f1094b4d768dbf9fee039da117abc226a3dc03b567a7f28cdf8e (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,840 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.1.2-py3-none-any.whl#sha256=3e8e6104af6caf8665b767c6618c412a28d6d45e5cf81f0e5df37af4a9f20c4a (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,840 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.1.1-py3-none-any.whl#sha256=be8d7134be48e860df0cb0dbe29dc847a0845af168831211d5c387c5b4439a0e (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,840 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.0.3-py3-none-any.whl#sha256=485bacde600c1e704bf96d444683f8d254f03dcad9d59cbecc6ef6434be032f9 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,841 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.0.2-py3-none-any.whl#sha256=c42cadb7f2e6473f37ca6a906c35ab3eccaa056126134a7519406842ef57b63f (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,842 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.0.1-py3-none-any.whl#sha256=a203d2b0535783470077aeef294bcf5ef0664ea223202a97c46f96899a1d723b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,842 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.0.0-py3-none-any.whl#sha256=2b9d3bce166e31abb2ffc8c574fc111268b8f1a67dea6324c88de325d8b110d4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-06-07T04:30:12,843 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.2.1-py3-none-any.whl#sha256=e37a8c0551dded98be57102c74e99152b15aa0369a4b28287c95e0b0e1b0c7f9 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,843 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.1.4-py3-none-any.whl#sha256=a0d156aebf5163d1c632ec4c512d86f60cd8848ff63bfdee5e72f0b2b1ea9942 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,844 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.1.3-py3-none-any.whl#sha256=31efbe6b15793cf934e6d3fa0acf8fa040a1110373f2af602c1384f2fddc61a5 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,844 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.1.2-py3-none-any.whl#sha256=af60799c6e1c91da02a7b4d1dc70fa1285c49cbb474f15dad9f74fc50ef0d214 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,845 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.1.1-py3-none-any.whl#sha256=c2a889aa873a367630a84277ea40ae425c8ccfb9d29770e60ed120e11f16287b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,845 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.1.dev0-py3-none-any.whl#sha256=c9198ae7cb3065b124471a6e7c9b40207d05b9dd860896249bd107558b62eabd (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,846 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,847 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,847 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,848 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,848 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,849 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-06-07T04:30:12,849 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2026-06-07T04:30:12,850 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2026-06-07T04:30:12,850 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2026-06-07T04:30:12,851 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2026-06-07T04:30:12,874 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2026-06-07T04:30:12,892 Collecting galaxy-app==26.0.1 2026-06-07T04:30:12,894 Created temporary directory: /tmp/pip-unpack-dr58b7e4 2026-06-07T04:30:13,210 Downloading galaxy_app-26.0.1.tar.gz (1.4 MB) 2026-06-07T04:30:14,829 Added galaxy-app==26.0.1 from https://files.pythonhosted.org/packages/4f/44/2355a6711bfd0a575e95784cf12b2aa15397ef6b06a83e6de15070f34596/galaxy_app-26.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-ugpovj_0' 2026-06-07T04:30:14,832 Created temporary directory: /tmp/pip-build-env-0diap9g4 2026-06-07T04:30:14,836 Installing build dependencies: started 2026-06-07T04:30:14,838 Running command pip subprocess to install build dependencies 2026-06-07T04:30:15,997 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-07T04:30:16,401 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-07T04:30:16,423 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-07T04:30:18,447 Collecting setuptools 2026-06-07T04:30:18,448 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-07T04:30:18,467 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-07T04:30:18,735 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-07T04:30:18,839 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-07T04:30:21,551 Installing collected packages: setuptools 2026-06-07T04:30:24,571 Successfully installed setuptools-82.0.1 2026-06-07T04:30:24,840 Installing build dependencies: finished with status 'done' 2026-06-07T04:30:24,847 Getting requirements to build wheel: started 2026-06-07T04:30:24,848 Running command Getting requirements to build wheel 2026-06-07T04:30:25,526 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2026-06-07T04:30:25,526 !! 2026-06-07T04:30:25,527 ******************************************************************************** 2026-06-07T04:30:25,528 The following seems to be defined outside of `pyproject.toml`: 2026-06-07T04:30:25,529 `keywords = ['Galaxy']` 2026-06-07T04:30:25,530 According to the spec (see the link below), however, setuptools CANNOT 2026-06-07T04:30:25,530 consider this value unless `keywords` is listed as `dynamic`. 2026-06-07T04:30:25,531 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-06-07T04:30:25,532 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2026-06-07T04:30:25,533 remove the `[project]` table from your file and rely entirely on other means of 2026-06-07T04:30:25,534 configuration. 2026-06-07T04:30:25,534 ******************************************************************************** 2026-06-07T04:30:25,535 !! 2026-06-07T04:30:25,536 _handle_missing_dynamic(dist, project_table) 2026-06-07T04:30:25,536 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2026-06-07T04:30:25,537 !! 2026-06-07T04:30:25,538 ******************************************************************************** 2026-06-07T04:30:25,538 The following seems to be defined outside of `pyproject.toml`: 2026-06-07T04:30:25,539 `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']` 2026-06-07T04:30:25,541 According to the spec (see the link below), however, setuptools CANNOT 2026-06-07T04:30:25,541 consider this value unless `classifiers` is listed as `dynamic`. 2026-06-07T04:30:25,542 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-06-07T04:30:25,543 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2026-06-07T04:30:25,544 remove the `[project]` table from your file and rely entirely on other means of 2026-06-07T04:30:25,544 configuration. 2026-06-07T04:30:25,545 ******************************************************************************** 2026-06-07T04:30:25,545 !! 2026-06-07T04:30:25,546 _handle_missing_dynamic(dist, project_table) 2026-06-07T04:30:25,618 running egg_info 2026-06-07T04:30:25,624 writing galaxy_app.egg-info/PKG-INFO 2026-06-07T04:30:25,639 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2026-06-07T04:30:25,641 writing entry points to galaxy_app.egg-info/entry_points.txt 2026-06-07T04:30:25,644 writing requirements to galaxy_app.egg-info/requires.txt 2026-06-07T04:30:25,645 writing top-level names to galaxy_app.egg-info/top_level.txt 2026-06-07T04:30:25,734 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-06-07T04:30:25,804 reading manifest template 'MANIFEST.in' 2026-06-07T04:30:26,309 adding license file 'LICENSE' 2026-06-07T04:30:26,340 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-06-07T04:30:26,439 Getting requirements to build wheel: finished with status 'done' 2026-06-07T04:30:26,442 Created temporary directory: /tmp/pip-modern-metadata-y0ud3qpc 2026-06-07T04:30:26,445 Preparing metadata (pyproject.toml): started 2026-06-07T04:30:26,446 Running command Preparing metadata (pyproject.toml) 2026-06-07T04:30:27,027 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2026-06-07T04:30:27,027 !! 2026-06-07T04:30:27,028 ******************************************************************************** 2026-06-07T04:30:27,029 The following seems to be defined outside of `pyproject.toml`: 2026-06-07T04:30:27,030 `keywords = ['Galaxy']` 2026-06-07T04:30:27,031 According to the spec (see the link below), however, setuptools CANNOT 2026-06-07T04:30:27,032 consider this value unless `keywords` is listed as `dynamic`. 2026-06-07T04:30:27,033 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-06-07T04:30:27,034 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2026-06-07T04:30:27,035 remove the `[project]` table from your file and rely entirely on other means of 2026-06-07T04:30:27,036 configuration. 2026-06-07T04:30:27,036 ******************************************************************************** 2026-06-07T04:30:27,037 !! 2026-06-07T04:30:27,038 _handle_missing_dynamic(dist, project_table) 2026-06-07T04:30:27,038 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2026-06-07T04:30:27,039 !! 2026-06-07T04:30:27,040 ******************************************************************************** 2026-06-07T04:30:27,041 The following seems to be defined outside of `pyproject.toml`: 2026-06-07T04:30:27,042 `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']` 2026-06-07T04:30:27,043 According to the spec (see the link below), however, setuptools CANNOT 2026-06-07T04:30:27,044 consider this value unless `classifiers` is listed as `dynamic`. 2026-06-07T04:30:27,045 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-06-07T04:30:27,046 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2026-06-07T04:30:27,046 remove the `[project]` table from your file and rely entirely on other means of 2026-06-07T04:30:27,046 configuration. 2026-06-07T04:30:27,047 ******************************************************************************** 2026-06-07T04:30:27,048 !! 2026-06-07T04:30:27,048 _handle_missing_dynamic(dist, project_table) 2026-06-07T04:30:27,115 running dist_info 2026-06-07T04:30:27,125 creating /tmp/pip-modern-metadata-y0ud3qpc/galaxy_app.egg-info 2026-06-07T04:30:27,126 writing /tmp/pip-modern-metadata-y0ud3qpc/galaxy_app.egg-info/PKG-INFO 2026-06-07T04:30:27,139 writing dependency_links to /tmp/pip-modern-metadata-y0ud3qpc/galaxy_app.egg-info/dependency_links.txt 2026-06-07T04:30:27,141 writing entry points to /tmp/pip-modern-metadata-y0ud3qpc/galaxy_app.egg-info/entry_points.txt 2026-06-07T04:30:27,144 writing requirements to /tmp/pip-modern-metadata-y0ud3qpc/galaxy_app.egg-info/requires.txt 2026-06-07T04:30:27,145 writing top-level names to /tmp/pip-modern-metadata-y0ud3qpc/galaxy_app.egg-info/top_level.txt 2026-06-07T04:30:27,146 writing manifest file '/tmp/pip-modern-metadata-y0ud3qpc/galaxy_app.egg-info/SOURCES.txt' 2026-06-07T04:30:27,222 reading manifest file '/tmp/pip-modern-metadata-y0ud3qpc/galaxy_app.egg-info/SOURCES.txt' 2026-06-07T04:30:27,224 reading manifest template 'MANIFEST.in' 2026-06-07T04:30:27,719 adding license file 'LICENSE' 2026-06-07T04:30:27,741 writing manifest file '/tmp/pip-modern-metadata-y0ud3qpc/galaxy_app.egg-info/SOURCES.txt' 2026-06-07T04:30:27,743 creating '/tmp/pip-modern-metadata-y0ud3qpc/galaxy_app-26.0.1.dist-info' 2026-06-07T04:30:27,874 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-07T04:30:27,891 Source in /tmp/pip-wheel-5zm8u0xf/galaxy-app_032b01dc33ff471f9b183789c82d588c has version 26.0.1, which satisfies requirement galaxy-app==26.0.1 from https://files.pythonhosted.org/packages/4f/44/2355a6711bfd0a575e95784cf12b2aa15397ef6b06a83e6de15070f34596/galaxy_app-26.0.1.tar.gz 2026-06-07T04:30:27,892 Removed galaxy-app==26.0.1 from https://files.pythonhosted.org/packages/4f/44/2355a6711bfd0a575e95784cf12b2aa15397ef6b06a83e6de15070f34596/galaxy_app-26.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-ugpovj_0' 2026-06-07T04:30:27,923 Created temporary directory: /tmp/pip-unpack-sxvmh_rm 2026-06-07T04:30:27,923 Building wheels for collected packages: galaxy-app 2026-06-07T04:30:27,928 Created temporary directory: /tmp/pip-wheel-0201m2vy 2026-06-07T04:30:27,928 Destination directory: /tmp/pip-wheel-0201m2vy 2026-06-07T04:30:27,930 Building wheel for galaxy-app (pyproject.toml): started 2026-06-07T04:30:27,932 Running command Building wheel for galaxy-app (pyproject.toml) 2026-06-07T04:30:28,519 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2026-06-07T04:30:28,519 !! 2026-06-07T04:30:28,521 ******************************************************************************** 2026-06-07T04:30:28,521 The following seems to be defined outside of `pyproject.toml`: 2026-06-07T04:30:28,522 `keywords = ['Galaxy']` 2026-06-07T04:30:28,524 According to the spec (see the link below), however, setuptools CANNOT 2026-06-07T04:30:28,524 consider this value unless `keywords` is listed as `dynamic`. 2026-06-07T04:30:28,526 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-06-07T04:30:28,527 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2026-06-07T04:30:28,527 remove the `[project]` table from your file and rely entirely on other means of 2026-06-07T04:30:28,528 configuration. 2026-06-07T04:30:28,528 ******************************************************************************** 2026-06-07T04:30:28,529 !! 2026-06-07T04:30:28,529 _handle_missing_dynamic(dist, project_table) 2026-06-07T04:30:28,530 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2026-06-07T04:30:28,530 !! 2026-06-07T04:30:28,531 ******************************************************************************** 2026-06-07T04:30:28,532 The following seems to be defined outside of `pyproject.toml`: 2026-06-07T04:30:28,533 `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']` 2026-06-07T04:30:28,534 According to the spec (see the link below), however, setuptools CANNOT 2026-06-07T04:30:28,534 consider this value unless `classifiers` is listed as `dynamic`. 2026-06-07T04:30:28,535 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-06-07T04:30:28,537 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2026-06-07T04:30:28,537 remove the `[project]` table from your file and rely entirely on other means of 2026-06-07T04:30:28,538 configuration. 2026-06-07T04:30:28,539 ******************************************************************************** 2026-06-07T04:30:28,540 !! 2026-06-07T04:30:28,540 _handle_missing_dynamic(dist, project_table) 2026-06-07T04:30:28,603 running bdist_wheel 2026-06-07T04:30:28,620 running build 2026-06-07T04:30:28,621 running build_py 2026-06-07T04:30:28,627 creating build/lib/galaxy_ext 2026-06-07T04:30:28,629 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2026-06-07T04:30:28,632 creating build/lib/galaxy 2026-06-07T04:30:28,633 copying galaxy/main.py -> build/lib/galaxy 2026-06-07T04:30:28,635 copying galaxy/app.py -> build/lib/galaxy 2026-06-07T04:30:28,638 copying galaxy/__init__.py -> build/lib/galaxy 2026-06-07T04:30:28,640 copying galaxy/structured_app.py -> build/lib/galaxy 2026-06-07T04:30:28,642 copying galaxy/queues.py -> build/lib/galaxy 2026-06-07T04:30:28,644 copying galaxy/queue_worker.py -> build/lib/galaxy 2026-06-07T04:30:28,647 copying galaxy/main_config.py -> build/lib/galaxy 2026-06-07T04:30:28,649 copying galaxy/config_watchers.py -> build/lib/galaxy 2026-06-07T04:30:28,651 copying galaxy/di.py -> build/lib/galaxy 2026-06-07T04:30:28,653 creating build/lib/tool_shed_client 2026-06-07T04:30:28,654 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2026-06-07T04:30:28,656 copying tool_shed_client/trs_util.py -> build/lib/tool_shed_client 2026-06-07T04:30:28,658 creating build/lib/galaxy_ext/container_monitor 2026-06-07T04:30:28,659 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2026-06-07T04:30:28,661 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2026-06-07T04:30:28,663 creating build/lib/galaxy_ext/expressions 2026-06-07T04:30:28,664 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2026-06-07T04:30:28,665 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2026-06-07T04:30:28,667 creating build/lib/galaxy_ext/metadata 2026-06-07T04:30:28,668 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2026-06-07T04:30:28,670 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2026-06-07T04:30:28,672 creating build/lib/galaxy/celery 2026-06-07T04:30:28,673 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2026-06-07T04:30:28,676 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2026-06-07T04:30:28,678 copying galaxy/celery/base_task.py -> build/lib/galaxy/celery 2026-06-07T04:30:28,680 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2026-06-07T04:30:28,682 creating build/lib/galaxy/dependencies 2026-06-07T04:30:28,683 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2026-06-07T04:30:28,685 copying galaxy/dependencies/script.py -> build/lib/galaxy/dependencies 2026-06-07T04:30:28,687 creating build/lib/galaxy/carbon_emissions 2026-06-07T04:30:28,688 copying galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions 2026-06-07T04:30:28,691 creating build/lib/galaxy/tool_shed 2026-06-07T04:30:28,692 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2026-06-07T04:30:28,693 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2026-06-07T04:30:28,695 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2026-06-07T04:30:28,697 creating build/lib/galaxy/tools 2026-06-07T04:30:28,698 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,701 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,702 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,708 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,711 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,713 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,716 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,718 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,720 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,723 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,726 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,728 copying galaxy/tools/_types.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,731 copying galaxy/tools/execution_helpers.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,733 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,736 copying galaxy/tools/stock.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,738 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2026-06-07T04:30:28,741 creating build/lib/galaxy/actions 2026-06-07T04:30:28,742 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2026-06-07T04:30:28,744 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2026-06-07T04:30:28,748 creating build/lib/galaxy/managers 2026-06-07T04:30:28,749 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,751 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,753 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,756 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,758 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,761 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,763 copying galaxy/managers/headers_encryption.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,766 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,768 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,770 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,772 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,774 copying galaxy/managers/forms.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,776 copying galaxy/managers/credentials.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,779 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,781 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,784 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,786 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,788 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,791 copying galaxy/managers/dbkeys.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,793 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,795 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,797 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,799 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,800 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,802 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,804 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,807 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,811 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,813 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,816 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,818 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,820 copying galaxy/managers/object_store_instances.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,823 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,826 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,828 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,830 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,832 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,836 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,837 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,839 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,841 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,844 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,846 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,850 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,851 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,854 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,856 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,858 copying galaxy/managers/file_source_instances.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,861 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,864 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,866 copying galaxy/managers/workflow_completion.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,868 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,871 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,873 copying galaxy/managers/landing.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,875 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,877 copying galaxy/managers/tours.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,880 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,881 copying galaxy/managers/_config_templates.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,884 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,886 copying galaxy/managers/item_tags.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,888 copying galaxy/managers/agents.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,890 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,893 copying galaxy/managers/chat.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,895 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,898 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2026-06-07T04:30:28,900 creating build/lib/galaxy/authnz 2026-06-07T04:30:28,901 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2026-06-07T04:30:28,904 copying galaxy/authnz/oidc.py -> build/lib/galaxy/authnz 2026-06-07T04:30:28,905 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2026-06-07T04:30:28,908 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2026-06-07T04:30:28,910 copying galaxy/authnz/keycloak.py -> build/lib/galaxy/authnz 2026-06-07T04:30:28,912 copying galaxy/authnz/cilogon.py -> build/lib/galaxy/authnz 2026-06-07T04:30:28,914 copying galaxy/authnz/tapis.py -> build/lib/galaxy/authnz 2026-06-07T04:30:28,917 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2026-06-07T04:30:28,919 copying galaxy/authnz/oidc_utils.py -> build/lib/galaxy/authnz 2026-06-07T04:30:28,922 creating build/lib/galaxy/jobs 2026-06-07T04:30:28,923 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2026-06-07T04:30:28,926 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2026-06-07T04:30:28,930 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2026-06-07T04:30:28,933 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2026-06-07T04:30:28,936 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2026-06-07T04:30:28,938 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2026-06-07T04:30:28,940 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2026-06-07T04:30:28,942 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2026-06-07T04:30:28,944 copying galaxy/jobs/job_destination.py -> build/lib/galaxy/jobs 2026-06-07T04:30:28,947 creating build/lib/galaxy/app_unittest_utils 2026-06-07T04:30:28,948 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2026-06-07T04:30:28,950 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2026-06-07T04:30:28,952 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2026-06-07T04:30:28,954 copying galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils 2026-06-07T04:30:28,956 creating build/lib/galaxy/webhooks 2026-06-07T04:30:28,957 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2026-06-07T04:30:28,960 creating build/lib/galaxy/work 2026-06-07T04:30:28,961 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2026-06-07T04:30:28,962 copying galaxy/work/context.py -> build/lib/galaxy/work 2026-06-07T04:30:28,965 creating build/lib/galaxy/agents 2026-06-07T04:30:28,966 copying galaxy/agents/base.py -> build/lib/galaxy/agents 2026-06-07T04:30:28,969 copying galaxy/agents/__init__.py -> build/lib/galaxy/agents 2026-06-07T04:30:28,970 copying galaxy/agents/tools.py -> build/lib/galaxy/agents 2026-06-07T04:30:28,973 copying galaxy/agents/orchestrator.py -> build/lib/galaxy/agents 2026-06-07T04:30:28,975 copying galaxy/agents/custom_tool.py -> build/lib/galaxy/agents 2026-06-07T04:30:28,977 copying galaxy/agents/error_analysis.py -> build/lib/galaxy/agents 2026-06-07T04:30:28,980 copying galaxy/agents/router.py -> build/lib/galaxy/agents 2026-06-07T04:30:28,982 copying galaxy/agents/registry.py -> build/lib/galaxy/agents 2026-06-07T04:30:28,985 creating build/lib/galaxy/forms 2026-06-07T04:30:28,985 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2026-06-07T04:30:28,988 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2026-06-07T04:30:28,990 creating build/lib/galaxy/visualization 2026-06-07T04:30:28,991 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2026-06-07T04:30:28,993 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2026-06-07T04:30:28,995 creating build/lib/galaxy/workflow 2026-06-07T04:30:28,996 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2026-06-07T04:30:28,998 copying galaxy/workflow/errors.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,000 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,003 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,005 copying galaxy/workflow/completion_monitor.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,008 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,012 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,015 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,017 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,019 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,022 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,024 copying galaxy/workflow/workflow_parameter_input_definitions.py -> build/lib/galaxy/workflow 2026-06-07T04:30:29,026 creating build/lib/galaxy/short_term_storage 2026-06-07T04:30:29,028 copying galaxy/short_term_storage/__init__.py -> build/lib/galaxy/short_term_storage 2026-06-07T04:30:29,031 creating build/lib/galaxy/tool_shed/unittest_utils 2026-06-07T04:30:29,031 copying galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils 2026-06-07T04:30:29,034 creating build/lib/galaxy/tool_shed/metadata 2026-06-07T04:30:29,035 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2026-06-07T04:30:29,037 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2026-06-07T04:30:29,040 creating build/lib/galaxy/tool_shed/tools 2026-06-07T04:30:29,041 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2026-06-07T04:30:29,043 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2026-06-07T04:30:29,045 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2026-06-07T04:30:29,048 creating build/lib/galaxy/tool_shed/galaxy_install 2026-06-07T04:30:29,049 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-06-07T04:30:29,052 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-06-07T04:30:29,053 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-06-07T04:30:29,055 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-06-07T04:30:29,058 copying galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-06-07T04:30:29,061 creating build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,062 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,064 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,066 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,068 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,070 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,072 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,074 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,076 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,078 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,081 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,083 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2026-06-07T04:30:29,086 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-06-07T04:30:29,086 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-06-07T04:30:29,088 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-06-07T04:30:29,091 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-06-07T04:30:29,092 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-06-07T04:30:29,095 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-06-07T04:30:29,097 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2026-06-07T04:30:29,098 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-06-07T04:30:29,100 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-06-07T04:30:29,103 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-06-07T04:30:29,105 creating build/lib/galaxy/tools/error_reports 2026-06-07T04:30:29,106 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2026-06-07T04:30:29,109 creating build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,110 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,113 copying galaxy/tools/parameters/options.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,115 copying galaxy/tools/parameters/cancelable_request.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,117 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,119 copying galaxy/tools/parameters/populate_model.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,121 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,123 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,127 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,130 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,132 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,134 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,137 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,139 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,141 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,144 copying galaxy/tools/parameters/workflow_utils.py -> build/lib/galaxy/tools/parameters 2026-06-07T04:30:29,147 creating build/lib/galaxy/tools/expressions 2026-06-07T04:30:29,148 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2026-06-07T04:30:29,149 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2026-06-07T04:30:29,151 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2026-06-07T04:30:29,153 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2026-06-07T04:30:29,155 creating build/lib/galaxy/tools/fetch 2026-06-07T04:30:29,155 copying galaxy/tools/fetch/__init__.py -> build/lib/galaxy/tools/fetch 2026-06-07T04:30:29,157 copying galaxy/tools/fetch/workbooks.py -> build/lib/galaxy/tools/fetch 2026-06-07T04:30:29,160 creating build/lib/galaxy/tools/imp_exp 2026-06-07T04:30:29,161 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2026-06-07T04:30:29,163 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2026-06-07T04:30:29,165 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2026-06-07T04:30:29,167 creating build/lib/galaxy/tools/actions 2026-06-07T04:30:29,168 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2026-06-07T04:30:29,170 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2026-06-07T04:30:29,173 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2026-06-07T04:30:29,176 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2026-06-07T04:30:29,178 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2026-06-07T04:30:29,180 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2026-06-07T04:30:29,182 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2026-06-07T04:30:29,185 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2026-06-07T04:30:29,187 creating build/lib/galaxy/tools/data 2026-06-07T04:30:29,188 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2026-06-07T04:30:29,191 creating build/lib/galaxy/tools/data_manager 2026-06-07T04:30:29,191 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2026-06-07T04:30:29,193 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2026-06-07T04:30:29,196 creating build/lib/galaxy/tools/filters 2026-06-07T04:30:29,197 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2026-06-07T04:30:29,199 creating build/lib/galaxy/tools/util 2026-06-07T04:30:29,200 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2026-06-07T04:30:29,202 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2026-06-07T04:30:29,205 creating build/lib/galaxy/tools/search 2026-06-07T04:30:29,206 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2026-06-07T04:30:29,209 creating build/lib/galaxy/tools/error_reports/plugins 2026-06-07T04:30:29,210 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2026-06-07T04:30:29,212 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2026-06-07T04:30:29,214 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2026-06-07T04:30:29,216 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2026-06-07T04:30:29,218 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2026-06-07T04:30:29,220 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2026-06-07T04:30:29,221 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2026-06-07T04:30:29,223 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2026-06-07T04:30:29,226 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2026-06-07T04:30:29,228 creating build/lib/galaxy/tools/util/galaxyops 2026-06-07T04:30:29,229 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2026-06-07T04:30:29,231 creating build/lib/galaxy/jobs/rules 2026-06-07T04:30:29,232 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2026-06-07T04:30:29,234 creating build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,235 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,238 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,240 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,243 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,245 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,248 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,250 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,253 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,255 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,258 copying galaxy/jobs/runners/gcp_batch.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,260 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,263 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,265 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,268 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,270 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,273 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2026-06-07T04:30:29,276 creating build/lib/galaxy/jobs/splitters 2026-06-07T04:30:29,277 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2026-06-07T04:30:29,279 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2026-06-07T04:30:29,281 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2026-06-07T04:30:29,284 creating build/lib/galaxy/jobs/runners/state_handlers 2026-06-07T04:30:29,284 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-06-07T04:30:29,287 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-06-07T04:30:29,288 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-06-07T04:30:29,291 creating build/lib/galaxy/jobs/runners/util 2026-06-07T04:30:29,292 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2026-06-07T04:30:29,294 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2026-06-07T04:30:29,296 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2026-06-07T04:30:29,298 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2026-06-07T04:30:29,300 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2026-06-07T04:30:29,302 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2026-06-07T04:30:29,304 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2026-06-07T04:30:29,306 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2026-06-07T04:30:29,308 creating build/lib/galaxy/jobs/runners/util/cli 2026-06-07T04:30:29,309 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2026-06-07T04:30:29,311 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2026-06-07T04:30:29,313 creating build/lib/galaxy/jobs/runners/util/job_script 2026-06-07T04:30:29,314 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2026-06-07T04:30:29,316 creating build/lib/galaxy/jobs/runners/util/condor 2026-06-07T04:30:29,317 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2026-06-07T04:30:29,319 creating build/lib/galaxy/jobs/runners/util/gcp_batch 2026-06-07T04:30:29,320 copying galaxy/jobs/runners/util/gcp_batch/helpers.py -> build/lib/galaxy/jobs/runners/util/gcp_batch 2026-06-07T04:30:29,323 copying galaxy/jobs/runners/util/gcp_batch/__init__.py -> build/lib/galaxy/jobs/runners/util/gcp_batch 2026-06-07T04:30:29,325 creating build/lib/galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:29,326 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:29,328 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:29,330 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:29,332 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:29,334 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:29,336 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:29,339 creating build/lib/galaxy/jobs/runners/util/cli/shell 2026-06-07T04:30:29,340 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-06-07T04:30:29,342 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-06-07T04:30:29,343 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-06-07T04:30:29,346 creating build/lib/galaxy/visualization/plugins 2026-06-07T04:30:29,347 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2026-06-07T04:30:29,349 copying galaxy/visualization/plugins/datasource_testing.py -> build/lib/galaxy/visualization/plugins 2026-06-07T04:30:29,351 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2026-06-07T04:30:29,353 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2026-06-07T04:30:29,355 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2026-06-07T04:30:29,357 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2026-06-07T04:30:29,360 creating build/lib/galaxy/visualization/data_providers 2026-06-07T04:30:29,361 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2026-06-07T04:30:29,363 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2026-06-07T04:30:29,365 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2026-06-07T04:30:29,367 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2026-06-07T04:30:29,369 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2026-06-07T04:30:29,373 creating build/lib/galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:29,374 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:29,376 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:29,378 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:29,380 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:29,382 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:29,384 creating build/lib/galaxy/workflow/completion_hooks 2026-06-07T04:30:29,385 copying galaxy/workflow/completion_hooks/notification.py -> build/lib/galaxy/workflow/completion_hooks 2026-06-07T04:30:29,388 copying galaxy/workflow/completion_hooks/base.py -> build/lib/galaxy/workflow/completion_hooks 2026-06-07T04:30:29,390 copying galaxy/workflow/completion_hooks/__init__.py -> build/lib/galaxy/workflow/completion_hooks 2026-06-07T04:30:29,392 copying galaxy/workflow/completion_hooks/export.py -> build/lib/galaxy/workflow/completion_hooks 2026-06-07T04:30:29,394 creating build/lib/galaxy/workflow/schedulers 2026-06-07T04:30:29,395 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2026-06-07T04:30:29,397 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2026-06-07T04:30:29,399 creating build/lib/galaxy/workflow/reports 2026-06-07T04:30:29,400 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2026-06-07T04:30:29,403 creating build/lib/galaxy/workflow/resources 2026-06-07T04:30:29,404 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2026-06-07T04:30:29,407 creating build/lib/galaxy/workflow/refactor 2026-06-07T04:30:29,408 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2026-06-07T04:30:29,410 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2026-06-07T04:30:29,412 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2026-06-07T04:30:29,415 creating build/lib/galaxy/workflow/reports/generators 2026-06-07T04:30:29,416 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2026-06-07T04:30:29,418 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2026-06-07T04:30:29,421 creating build/lib/tool_shed_client/schema 2026-06-07T04:30:29,422 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2026-06-07T04:30:29,424 copying tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema 2026-06-07T04:30:29,427 copying tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema 2026-06-07T04:30:29,429 running egg_info 2026-06-07T04:30:29,439 writing galaxy_app.egg-info/PKG-INFO 2026-06-07T04:30:29,452 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2026-06-07T04:30:29,454 writing entry points to galaxy_app.egg-info/entry_points.txt 2026-06-07T04:30:29,457 writing requirements to galaxy_app.egg-info/requires.txt 2026-06-07T04:30:29,458 writing top-level names to galaxy_app.egg-info/top_level.txt 2026-06-07T04:30:29,521 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-06-07T04:30:29,555 reading manifest template 'MANIFEST.in' 2026-06-07T04:30:30,070 adding license file 'LICENSE' 2026-06-07T04:30:30,108 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-06-07T04:30:30,114 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2026-06-07T04:30:30,115 !! 2026-06-07T04:30:30,116 ******************************************************************************** 2026-06-07T04:30:30,116 ############################ 2026-06-07T04:30:30,117 # Package would be ignored # 2026-06-07T04:30:30,117 ############################ 2026-06-07T04:30:30,118 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2026-06-07T04:30:30,118 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,119 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,119 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2026-06-07T04:30:30,120 to the `packages` configuration field. 2026-06-07T04:30:30,121 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,121 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,122 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,122 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,123 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,124 If you don't want 'galaxy.tools.bundled' to be distributed and are 2026-06-07T04:30:30,125 already explicitly excluding 'galaxy.tools.bundled' via 2026-06-07T04:30:30,125 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,126 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,126 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,127 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,129 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,130 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,131 even if it does not contain any `.py` files. 2026-06-07T04:30:30,132 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,132 directory, all directories are treated like packages. 2026-06-07T04:30:30,133 ******************************************************************************** 2026-06-07T04:30:30,134 !! 2026-06-07T04:30:30,135 check.warn(importable) 2026-06-07T04:30:30,135 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2026-06-07T04:30:30,136 !! 2026-06-07T04:30:30,137 ******************************************************************************** 2026-06-07T04:30:30,138 ############################ 2026-06-07T04:30:30,138 # Package would be ignored # 2026-06-07T04:30:30,139 ############################ 2026-06-07T04:30:30,139 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2026-06-07T04:30:30,140 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,141 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,141 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2026-06-07T04:30:30,142 to the `packages` configuration field. 2026-06-07T04:30:30,143 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,144 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,146 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,146 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,147 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2026-06-07T04:30:30,148 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2026-06-07T04:30:30,148 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,149 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,149 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,150 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,151 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,152 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,152 even if it does not contain any `.py` files. 2026-06-07T04:30:30,152 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,153 directory, all directories are treated like packages. 2026-06-07T04:30:30,153 ******************************************************************************** 2026-06-07T04:30:30,154 !! 2026-06-07T04:30:30,154 check.warn(importable) 2026-06-07T04:30:30,155 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2026-06-07T04:30:30,155 !! 2026-06-07T04:30:30,156 ******************************************************************************** 2026-06-07T04:30:30,157 ############################ 2026-06-07T04:30:30,157 # Package would be ignored # 2026-06-07T04:30:30,158 ############################ 2026-06-07T04:30:30,158 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2026-06-07T04:30:30,159 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,160 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,161 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2026-06-07T04:30:30,161 to the `packages` configuration field. 2026-06-07T04:30:30,162 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,163 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,163 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,164 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,166 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2026-06-07T04:30:30,167 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2026-06-07T04:30:30,167 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,168 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,168 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,169 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,171 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,172 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,173 even if it does not contain any `.py` files. 2026-06-07T04:30:30,174 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,174 directory, all directories are treated like packages. 2026-06-07T04:30:30,175 ******************************************************************************** 2026-06-07T04:30:30,176 !! 2026-06-07T04:30:30,176 check.warn(importable) 2026-06-07T04:30:30,177 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2026-06-07T04:30:30,177 !! 2026-06-07T04:30:30,178 ******************************************************************************** 2026-06-07T04:30:30,179 ############################ 2026-06-07T04:30:30,179 # Package would be ignored # 2026-06-07T04:30:30,179 ############################ 2026-06-07T04:30:30,180 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2026-06-07T04:30:30,180 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,181 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,181 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2026-06-07T04:30:30,182 to the `packages` configuration field. 2026-06-07T04:30:30,183 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,183 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,184 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,185 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,186 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,187 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2026-06-07T04:30:30,187 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2026-06-07T04:30:30,188 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,188 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,189 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,190 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,191 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,193 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,193 even if it does not contain any `.py` files. 2026-06-07T04:30:30,194 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,194 directory, all directories are treated like packages. 2026-06-07T04:30:30,195 ******************************************************************************** 2026-06-07T04:30:30,196 !! 2026-06-07T04:30:30,197 check.warn(importable) 2026-06-07T04:30:30,197 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2026-06-07T04:30:30,198 !! 2026-06-07T04:30:30,199 ******************************************************************************** 2026-06-07T04:30:30,199 ############################ 2026-06-07T04:30:30,200 # Package would be ignored # 2026-06-07T04:30:30,200 ############################ 2026-06-07T04:30:30,201 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2026-06-07T04:30:30,201 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,202 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,203 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2026-06-07T04:30:30,203 to the `packages` configuration field. 2026-06-07T04:30:30,204 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,204 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,205 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,206 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,207 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,208 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2026-06-07T04:30:30,208 already explicitly excluding 'galaxy.tools.bundled.extract' via 2026-06-07T04:30:30,208 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,209 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,209 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,210 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,211 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,213 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,213 even if it does not contain any `.py` files. 2026-06-07T04:30:30,214 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,214 directory, all directories are treated like packages. 2026-06-07T04:30:30,215 ******************************************************************************** 2026-06-07T04:30:30,216 !! 2026-06-07T04:30:30,216 check.warn(importable) 2026-06-07T04:30:30,217 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2026-06-07T04:30:30,218 !! 2026-06-07T04:30:30,219 ******************************************************************************** 2026-06-07T04:30:30,219 ############################ 2026-06-07T04:30:30,220 # Package would be ignored # 2026-06-07T04:30:30,220 ############################ 2026-06-07T04:30:30,221 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2026-06-07T04:30:30,222 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,223 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,223 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2026-06-07T04:30:30,224 to the `packages` configuration field. 2026-06-07T04:30:30,225 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,225 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,226 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,227 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,228 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,229 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2026-06-07T04:30:30,230 already explicitly excluding 'galaxy.tools.bundled.filters' via 2026-06-07T04:30:30,230 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,231 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,232 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,233 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,234 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,235 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,236 even if it does not contain any `.py` files. 2026-06-07T04:30:30,236 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,237 directory, all directories are treated like packages. 2026-06-07T04:30:30,237 ******************************************************************************** 2026-06-07T04:30:30,238 !! 2026-06-07T04:30:30,239 check.warn(importable) 2026-06-07T04:30:30,239 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2026-06-07T04:30:30,240 !! 2026-06-07T04:30:30,241 ******************************************************************************** 2026-06-07T04:30:30,241 ############################ 2026-06-07T04:30:30,242 # Package would be ignored # 2026-06-07T04:30:30,242 ############################ 2026-06-07T04:30:30,243 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2026-06-07T04:30:30,243 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,244 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,245 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2026-06-07T04:30:30,245 to the `packages` configuration field. 2026-06-07T04:30:30,246 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,247 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,248 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,249 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,250 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,251 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2026-06-07T04:30:30,252 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2026-06-07T04:30:30,252 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,253 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,253 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,254 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,255 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,257 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,258 even if it does not contain any `.py` files. 2026-06-07T04:30:30,258 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,259 directory, all directories are treated like packages. 2026-06-07T04:30:30,259 ******************************************************************************** 2026-06-07T04:30:30,260 !! 2026-06-07T04:30:30,261 check.warn(importable) 2026-06-07T04:30:30,262 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2026-06-07T04:30:30,262 !! 2026-06-07T04:30:30,263 ******************************************************************************** 2026-06-07T04:30:30,264 ############################ 2026-06-07T04:30:30,264 # Package would be ignored # 2026-06-07T04:30:30,265 ############################ 2026-06-07T04:30:30,265 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2026-06-07T04:30:30,266 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,266 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,267 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2026-06-07T04:30:30,268 to the `packages` configuration field. 2026-06-07T04:30:30,268 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,269 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,269 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,270 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,271 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,272 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2026-06-07T04:30:30,272 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2026-06-07T04:30:30,273 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,273 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,274 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,275 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,276 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,277 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,278 even if it does not contain any `.py` files. 2026-06-07T04:30:30,278 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,279 directory, all directories are treated like packages. 2026-06-07T04:30:30,279 ******************************************************************************** 2026-06-07T04:30:30,280 !! 2026-06-07T04:30:30,281 check.warn(importable) 2026-06-07T04:30:30,282 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2026-06-07T04:30:30,282 !! 2026-06-07T04:30:30,283 ******************************************************************************** 2026-06-07T04:30:30,284 ############################ 2026-06-07T04:30:30,284 # Package would be ignored # 2026-06-07T04:30:30,285 ############################ 2026-06-07T04:30:30,285 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2026-06-07T04:30:30,286 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,287 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,287 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2026-06-07T04:30:30,288 to the `packages` configuration field. 2026-06-07T04:30:30,289 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,290 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,290 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,291 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,292 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,293 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2026-06-07T04:30:30,294 already explicitly excluding 'galaxy.tools.bundled.maf' via 2026-06-07T04:30:30,294 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,294 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,295 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,296 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,297 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,299 even if it does not contain any `.py` files. 2026-06-07T04:30:30,299 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,300 directory, all directories are treated like packages. 2026-06-07T04:30:30,300 ******************************************************************************** 2026-06-07T04:30:30,301 !! 2026-06-07T04:30:30,302 check.warn(importable) 2026-06-07T04:30:30,302 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2026-06-07T04:30:30,302 !! 2026-06-07T04:30:30,303 ******************************************************************************** 2026-06-07T04:30:30,304 ############################ 2026-06-07T04:30:30,304 # Package would be ignored # 2026-06-07T04:30:30,305 ############################ 2026-06-07T04:30:30,305 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2026-06-07T04:30:30,306 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,307 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,307 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2026-06-07T04:30:30,308 to the `packages` configuration field. 2026-06-07T04:30:30,309 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,309 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,310 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,311 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,312 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,313 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2026-06-07T04:30:30,313 already explicitly excluding 'galaxy.tools.bundled.meme' via 2026-06-07T04:30:30,314 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,314 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,315 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,316 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,317 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,318 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,319 even if it does not contain any `.py` files. 2026-06-07T04:30:30,319 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,320 directory, all directories are treated like packages. 2026-06-07T04:30:30,321 ******************************************************************************** 2026-06-07T04:30:30,321 !! 2026-06-07T04:30:30,322 check.warn(importable) 2026-06-07T04:30:30,322 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2026-06-07T04:30:30,322 !! 2026-06-07T04:30:30,323 ******************************************************************************** 2026-06-07T04:30:30,324 ############################ 2026-06-07T04:30:30,324 # Package would be ignored # 2026-06-07T04:30:30,324 ############################ 2026-06-07T04:30:30,325 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2026-06-07T04:30:30,325 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,326 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,327 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2026-06-07T04:30:30,327 to the `packages` configuration field. 2026-06-07T04:30:30,328 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,328 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,329 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,330 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,331 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,332 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2026-06-07T04:30:30,332 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2026-06-07T04:30:30,333 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,333 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,333 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,334 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,335 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,337 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,337 even if it does not contain any `.py` files. 2026-06-07T04:30:30,338 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,339 directory, all directories are treated like packages. 2026-06-07T04:30:30,339 ******************************************************************************** 2026-06-07T04:30:30,341 !! 2026-06-07T04:30:30,341 check.warn(importable) 2026-06-07T04:30:30,342 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2026-06-07T04:30:30,342 !! 2026-06-07T04:30:30,343 ******************************************************************************** 2026-06-07T04:30:30,344 ############################ 2026-06-07T04:30:30,344 # Package would be ignored # 2026-06-07T04:30:30,345 ############################ 2026-06-07T04:30:30,345 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2026-06-07T04:30:30,346 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,347 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,347 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2026-06-07T04:30:30,348 to the `packages` configuration field. 2026-06-07T04:30:30,349 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,349 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,350 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,351 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,351 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,352 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2026-06-07T04:30:30,353 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2026-06-07T04:30:30,353 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,353 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,354 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,355 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,355 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,357 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,357 even if it does not contain any `.py` files. 2026-06-07T04:30:30,358 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,358 directory, all directories are treated like packages. 2026-06-07T04:30:30,359 ******************************************************************************** 2026-06-07T04:30:30,359 !! 2026-06-07T04:30:30,360 check.warn(importable) 2026-06-07T04:30:30,360 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2026-06-07T04:30:30,361 !! 2026-06-07T04:30:30,362 ******************************************************************************** 2026-06-07T04:30:30,362 ############################ 2026-06-07T04:30:30,363 # Package would be ignored # 2026-06-07T04:30:30,363 ############################ 2026-06-07T04:30:30,364 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2026-06-07T04:30:30,365 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,366 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,366 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2026-06-07T04:30:30,367 to the `packages` configuration field. 2026-06-07T04:30:30,368 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,368 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,369 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,370 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,371 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,372 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2026-06-07T04:30:30,373 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2026-06-07T04:30:30,373 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,374 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,375 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,375 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,376 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,377 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,378 even if it does not contain any `.py` files. 2026-06-07T04:30:30,378 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,379 directory, all directories are treated like packages. 2026-06-07T04:30:30,379 ******************************************************************************** 2026-06-07T04:30:30,380 !! 2026-06-07T04:30:30,380 check.warn(importable) 2026-06-07T04:30:30,381 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2026-06-07T04:30:30,381 !! 2026-06-07T04:30:30,382 ******************************************************************************** 2026-06-07T04:30:30,383 ############################ 2026-06-07T04:30:30,383 # Package would be ignored # 2026-06-07T04:30:30,384 ############################ 2026-06-07T04:30:30,384 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2026-06-07T04:30:30,384 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,385 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,386 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2026-06-07T04:30:30,386 to the `packages` configuration field. 2026-06-07T04:30:30,387 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,388 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,388 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,389 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,391 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,392 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2026-06-07T04:30:30,392 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2026-06-07T04:30:30,393 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,393 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,394 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,395 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,396 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,397 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,398 even if it does not contain any `.py` files. 2026-06-07T04:30:30,398 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,399 directory, all directories are treated like packages. 2026-06-07T04:30:30,399 ******************************************************************************** 2026-06-07T04:30:30,400 !! 2026-06-07T04:30:30,401 check.warn(importable) 2026-06-07T04:30:30,401 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2026-06-07T04:30:30,402 !! 2026-06-07T04:30:30,403 ******************************************************************************** 2026-06-07T04:30:30,404 ############################ 2026-06-07T04:30:30,404 # Package would be ignored # 2026-06-07T04:30:30,404 ############################ 2026-06-07T04:30:30,405 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2026-06-07T04:30:30,405 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,406 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,407 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2026-06-07T04:30:30,407 to the `packages` configuration field. 2026-06-07T04:30:30,408 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,409 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,409 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,410 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,411 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,412 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2026-06-07T04:30:30,412 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2026-06-07T04:30:30,413 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,413 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,414 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,415 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,416 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,417 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,418 even if it does not contain any `.py` files. 2026-06-07T04:30:30,418 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,419 directory, all directories are treated like packages. 2026-06-07T04:30:30,419 ******************************************************************************** 2026-06-07T04:30:30,420 !! 2026-06-07T04:30:30,421 check.warn(importable) 2026-06-07T04:30:30,421 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2026-06-07T04:30:30,421 !! 2026-06-07T04:30:30,422 ******************************************************************************** 2026-06-07T04:30:30,423 ############################ 2026-06-07T04:30:30,423 # Package would be ignored # 2026-06-07T04:30:30,424 ############################ 2026-06-07T04:30:30,424 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2026-06-07T04:30:30,425 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,426 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,426 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2026-06-07T04:30:30,427 to the `packages` configuration field. 2026-06-07T04:30:30,428 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,428 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,429 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,430 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,431 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,431 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2026-06-07T04:30:30,432 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2026-06-07T04:30:30,432 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,433 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,433 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,434 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,435 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,436 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,436 even if it does not contain any `.py` files. 2026-06-07T04:30:30,437 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,437 directory, all directories are treated like packages. 2026-06-07T04:30:30,438 ******************************************************************************** 2026-06-07T04:30:30,438 !! 2026-06-07T04:30:30,439 check.warn(importable) 2026-06-07T04:30:30,439 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2026-06-07T04:30:30,440 !! 2026-06-07T04:30:30,441 ******************************************************************************** 2026-06-07T04:30:30,441 ############################ 2026-06-07T04:30:30,442 # Package would be ignored # 2026-06-07T04:30:30,442 ############################ 2026-06-07T04:30:30,443 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2026-06-07T04:30:30,443 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,444 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,445 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2026-06-07T04:30:30,445 to the `packages` configuration field. 2026-06-07T04:30:30,446 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,447 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,447 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,448 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,449 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,450 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2026-06-07T04:30:30,451 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2026-06-07T04:30:30,451 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,452 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,452 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,453 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,454 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,456 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,456 even if it does not contain any `.py` files. 2026-06-07T04:30:30,457 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,457 directory, all directories are treated like packages. 2026-06-07T04:30:30,458 ******************************************************************************** 2026-06-07T04:30:30,459 !! 2026-06-07T04:30:30,459 check.warn(importable) 2026-06-07T04:30:30,459 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2026-06-07T04:30:30,460 !! 2026-06-07T04:30:30,460 ******************************************************************************** 2026-06-07T04:30:30,461 ############################ 2026-06-07T04:30:30,461 # Package would be ignored # 2026-06-07T04:30:30,462 ############################ 2026-06-07T04:30:30,462 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2026-06-07T04:30:30,463 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,463 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,464 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2026-06-07T04:30:30,464 to the `packages` configuration field. 2026-06-07T04:30:30,465 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,465 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,466 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,467 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,468 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,469 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2026-06-07T04:30:30,469 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2026-06-07T04:30:30,470 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,470 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,471 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,472 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,473 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,474 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,475 even if it does not contain any `.py` files. 2026-06-07T04:30:30,475 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,476 directory, all directories are treated like packages. 2026-06-07T04:30:30,476 ******************************************************************************** 2026-06-07T04:30:30,477 !! 2026-06-07T04:30:30,478 check.warn(importable) 2026-06-07T04:30:30,478 /tmp/pip-build-env-0diap9g4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2026-06-07T04:30:30,479 !! 2026-06-07T04:30:30,480 ******************************************************************************** 2026-06-07T04:30:30,480 ############################ 2026-06-07T04:30:30,481 # Package would be ignored # 2026-06-07T04:30:30,481 ############################ 2026-06-07T04:30:30,482 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2026-06-07T04:30:30,482 but it is absent from setuptools' `packages` configuration. 2026-06-07T04:30:30,484 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-07T04:30:30,484 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2026-06-07T04:30:30,484 to the `packages` configuration field. 2026-06-07T04:30:30,485 Alternatively, you can also rely on setuptools' discovery methods 2026-06-07T04:30:30,485 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-07T04:30:30,486 instead of `find_packages(...)`/`find:`). 2026-06-07T04:30:30,487 You can read more about "package discovery" on setuptools documentation page: 2026-06-07T04:30:30,488 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-07T04:30:30,488 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2026-06-07T04:30:30,489 already explicitly excluding 'galaxy.tools.bundled.stats' via 2026-06-07T04:30:30,489 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-07T04:30:30,490 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-07T04:30:30,490 combination with a more fine grained `package-data` configuration. 2026-06-07T04:30:30,491 You can read more about "package data files" on setuptools documentation page: 2026-06-07T04:30:30,492 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-07T04:30:30,493 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-07T04:30:30,494 even if it does not contain any `.py` files. 2026-06-07T04:30:30,494 On the other hand, currently there is no concept of package data 2026-06-07T04:30:30,494 directory, all directories are treated like packages. 2026-06-07T04:30:30,495 ******************************************************************************** 2026-06-07T04:30:30,496 !! 2026-06-07T04:30:30,496 check.warn(importable) 2026-06-07T04:30:30,497 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2026-06-07T04:30:30,497 copying galaxy/py.typed -> build/lib/galaxy 2026-06-07T04:30:30,498 copying tool_shed_client/py.typed -> build/lib/tool_shed_client 2026-06-07T04:30:30,498 copying galaxy/dependencies/conditional-constraints.txt -> build/lib/galaxy/dependencies 2026-06-07T04:30:30,499 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2026-06-07T04:30:30,499 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2026-06-07T04:30:30,500 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2026-06-07T04:30:30,500 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2026-06-07T04:30:30,501 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2026-06-07T04:30:30,501 copying galaxy/dependencies/pinned-test-requirements.txt -> build/lib/galaxy/dependencies 2026-06-07T04:30:30,502 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2026-06-07T04:30:30,502 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2026-06-07T04:30:30,503 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2026-06-07T04:30:30,503 copying galaxy/carbon_emissions/carbon_intensity.csv -> build/lib/galaxy/carbon_emissions 2026-06-07T04:30:30,504 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,504 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,504 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,505 copying galaxy/tools/convert_sample_sheet.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,505 copying galaxy/tools/cross_product_flat.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,506 copying galaxy/tools/cross_product_nested.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,507 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,507 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,507 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,508 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,508 copying galaxy/tools/filter_empty_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,509 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,509 copying galaxy/tools/filter_failed_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,509 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,510 copying galaxy/tools/filter_from_file_1.1.0.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,510 copying galaxy/tools/filter_null.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,511 copying galaxy/tools/filter_null_1.1.0.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,511 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,512 copying galaxy/tools/harmonize_two_collections_list.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,512 copying galaxy/tools/harmonize_two_collections_list_1.0.0.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,512 copying galaxy/tools/keep_success_collection.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,513 copying galaxy/tools/keep_success_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,513 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,514 copying galaxy/tools/model_operation_macros.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,514 copying galaxy/tools/nest_collection.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,515 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,515 copying galaxy/tools/sample_sheet_to_tabular.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,516 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,516 copying galaxy/tools/split_paired_and_unpaired.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,517 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,517 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,518 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2026-06-07T04:30:30,518 creating build/lib/galaxy/tools/bundled 2026-06-07T04:30:30,519 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2026-06-07T04:30:30,519 creating build/lib/galaxy/tools/bundled/data_export 2026-06-07T04:30:30,520 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2026-06-07T04:30:30,520 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2026-06-07T04:30:30,521 creating build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,521 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,521 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,522 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,522 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,523 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,523 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,524 copying galaxy/tools/bundled/data_source/diced.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,524 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,525 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,525 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,526 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,526 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,527 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,527 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,527 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,528 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,528 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,529 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,529 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,529 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,530 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,530 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,531 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,531 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,532 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,532 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,533 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,533 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,534 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,534 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,535 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,535 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,536 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,536 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,537 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,537 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,538 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,538 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,539 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-06-07T04:30:30,539 creating build/lib/galaxy/tools/bundled/expression_tools 2026-06-07T04:30:30,540 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-06-07T04:30:30,540 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-06-07T04:30:30,541 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-06-07T04:30:30,541 creating build/lib/galaxy/tools/bundled/extract 2026-06-07T04:30:30,541 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2026-06-07T04:30:30,542 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2026-06-07T04:30:30,542 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2026-06-07T04:30:30,543 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2026-06-07T04:30:30,543 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2026-06-07T04:30:30,544 creating build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,544 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,545 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,545 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,546 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,546 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,547 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,547 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,548 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,548 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,549 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,549 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,549 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,550 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,551 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,551 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,552 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,552 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,553 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,553 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,554 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,554 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,555 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,555 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,556 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,557 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,557 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,557 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,558 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,558 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,559 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,559 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,560 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,560 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,560 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,561 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,561 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,562 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,562 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,564 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,566 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,568 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,570 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,572 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,574 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,577 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,579 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,581 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,583 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,586 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,588 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,590 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,594 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,596 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,599 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,601 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,603 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,606 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,609 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,611 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,613 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,615 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,617 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,619 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,622 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,624 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,626 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,628 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,630 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2026-06-07T04:30:30,632 creating build/lib/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:30,633 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:30,635 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:30,638 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:30,640 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:30,643 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:30,645 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:30,648 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:30,650 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:30,652 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:30,654 creating build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,655 copying galaxy/tools/bundled/interactive/Rprofile.R -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,657 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,659 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,662 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,664 copying galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,667 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,669 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,671 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,674 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,676 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,678 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,680 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,683 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,685 copying galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,688 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,690 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,692 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,695 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,698 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,701 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,703 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,705 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,708 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,710 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,712 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,715 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,717 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,719 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,721 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,723 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,726 copying galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,729 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,731 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,733 copying galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,736 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,738 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,740 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,743 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,745 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,747 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2026-06-07T04:30:30,750 creating build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,751 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,753 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,755 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,757 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,760 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,762 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,765 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,767 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,769 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,772 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,774 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,776 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,779 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,781 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,783 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,785 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,787 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,789 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,791 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,793 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,796 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,799 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,802 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,804 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,806 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,809 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,811 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,813 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,816 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,818 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,820 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,822 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,825 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,827 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2026-06-07T04:30:30,829 creating build/lib/galaxy/tools/bundled/meme 2026-06-07T04:30:30,830 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2026-06-07T04:30:30,833 creating build/lib/galaxy/tools/bundled/metag_tools 2026-06-07T04:30:30,834 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-06-07T04:30:30,836 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-06-07T04:30:30,838 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-06-07T04:30:30,840 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-06-07T04:30:30,842 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-06-07T04:30:30,845 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-06-07T04:30:30,848 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-06-07T04:30:30,850 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:30,851 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:30,854 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:30,856 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:30,858 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:30,861 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:30,863 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:30,866 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:30,868 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:30,871 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:30,873 creating build/lib/galaxy/tools/bundled/ngs_simulation 2026-06-07T04:30:30,874 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-06-07T04:30:30,876 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-06-07T04:30:30,878 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-06-07T04:30:30,881 creating build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,882 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,885 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,888 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,891 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,893 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,895 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,898 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,900 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,902 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,904 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,906 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,908 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,911 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,913 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,915 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,918 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,920 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,923 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,925 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,927 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,930 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,932 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,934 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,937 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,940 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:30,942 creating build/lib/galaxy/tools/bundled/plotting 2026-06-07T04:30:30,944 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2026-06-07T04:30:30,947 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2026-06-07T04:30:30,949 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2026-06-07T04:30:30,952 creating build/lib/galaxy/tools/bundled/solid_tools 2026-06-07T04:30:30,954 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-06-07T04:30:30,956 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-06-07T04:30:30,959 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-06-07T04:30:30,962 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-06-07T04:30:30,964 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2026-06-07T04:30:30,967 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-06-07T04:30:30,969 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-06-07T04:30:30,972 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-06-07T04:30:30,974 creating build/lib/galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:30,975 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:30,978 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:30,981 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:30,983 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:30,986 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:30,988 creating build/lib/galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:30,989 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:30,992 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:30,996 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:30,999 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,003 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,006 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,009 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,013 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,017 creating build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,018 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,020 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,023 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,026 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,029 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,031 copying galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,034 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,037 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,040 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,043 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,045 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2026-06-07T04:30:31,047 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2026-06-07T04:30:31,060 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2026-06-07T04:30:31,062 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2026-06-07T04:30:31,064 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2026-06-07T04:30:31,067 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2026-06-07T04:30:31,069 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2026-06-07T04:30:31,071 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-06-07T04:30:31,074 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-06-07T04:30:31,076 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-06-07T04:30:31,079 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2026-06-07T04:30:31,119 installing to build/bdist.linux-armv7l/wheel 2026-06-07T04:30:31,119 running install 2026-06-07T04:30:31,143 running install_lib 2026-06-07T04:30:31,149 creating build/bdist.linux-armv7l/wheel 2026-06-07T04:30:31,152 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2026-06-07T04:30:31,154 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2026-06-07T04:30:31,155 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2026-06-07T04:30:31,157 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2026-06-07T04:30:31,160 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2026-06-07T04:30:31,161 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2026-06-07T04:30:31,163 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2026-06-07T04:30:31,165 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2026-06-07T04:30:31,168 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2026-06-07T04:30:31,169 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2026-06-07T04:30:31,171 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2026-06-07T04:30:31,173 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2026-06-07T04:30:31,176 creating build/bdist.linux-armv7l/wheel/galaxy 2026-06-07T04:30:31,178 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2026-06-07T04:30:31,179 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-06-07T04:30:31,182 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-06-07T04:30:31,185 copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-06-07T04:30:31,188 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-06-07T04:30:31,190 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-06-07T04:30:31,194 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2026-06-07T04:30:31,195 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,199 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,203 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,204 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,208 copying build/lib/galaxy/dependencies/pinned-test-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,210 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,211 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,213 copying build/lib/galaxy/dependencies/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,215 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,216 copying build/lib/galaxy/dependencies/conditional-constraints.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,218 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,220 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-06-07T04:30:31,222 creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2026-06-07T04:30:31,223 copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-06-07T04:30:31,225 copying build/lib/galaxy/carbon_emissions/carbon_intensity.csv -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-06-07T04:30:31,228 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-06-07T04:30:31,231 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-06-07T04:30:31,233 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-06-07T04:30:31,235 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-06-07T04:30:31,237 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-06-07T04:30:31,240 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2026-06-07T04:30:31,241 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-06-07T04:30:31,243 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-06-07T04:30:31,245 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2026-06-07T04:30:31,246 copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/unittest_utils 2026-06-07T04:30:31,249 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2026-06-07T04:30:31,250 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2026-06-07T04:30:31,251 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2026-06-07T04:30:31,255 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2026-06-07T04:30:31,256 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-06-07T04:30:31,258 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-06-07T04:30:31,261 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-06-07T04:30:31,264 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2026-06-07T04:30:31,265 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-06-07T04:30:31,268 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-06-07T04:30:31,270 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-06-07T04:30:31,271 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2026-06-07T04:30:31,273 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2026-06-07T04:30:31,276 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-06-07T04:30:31,278 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2026-06-07T04:30:31,279 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2026-06-07T04:30:31,282 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2026-06-07T04:30:31,284 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2026-06-07T04:30:31,285 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-06-07T04:30:31,286 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-06-07T04:30:31,289 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-06-07T04:30:31,291 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-06-07T04:30:31,294 copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-06-07T04:30:31,296 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-06-07T04:30:31,299 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2026-06-07T04:30:31,300 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,302 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,304 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,307 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,309 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,310 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,312 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,315 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,317 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,320 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,322 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-06-07T04:30:31,326 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2026-06-07T04:30:31,327 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2026-06-07T04:30:31,328 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports 2026-06-07T04:30:31,331 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2026-06-07T04:30:31,333 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-06-07T04:30:31,335 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-06-07T04:30:31,336 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-06-07T04:30:31,338 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-06-07T04:30:31,340 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-06-07T04:30:31,342 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-06-07T04:30:31,343 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-06-07T04:30:31,346 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-06-07T04:30:31,348 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-06-07T04:30:31,350 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:31,352 copying build/lib/galaxy/tools/harmonize_two_collections_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:31,355 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:31,357 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:31,359 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2026-06-07T04:30:31,360 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,363 copying build/lib/galaxy/tools/parameters/options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,365 copying build/lib/galaxy/tools/parameters/cancelable_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,366 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,369 copying build/lib/galaxy/tools/parameters/populate_model.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,371 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,373 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,378 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,381 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,383 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,386 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,389 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,391 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,393 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,396 copying build/lib/galaxy/tools/parameters/workflow_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-06-07T04:30:31,398 copying build/lib/galaxy/tools/split_paired_and_unpaired.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:31,400 copying build/lib/galaxy/tools/filter_null.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:31,403 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2026-06-07T04:30:31,404 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2026-06-07T04:30:31,405 copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,408 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,409 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,412 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,414 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,415 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,417 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,419 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,422 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,424 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,426 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-06-07T04:30:31,429 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2026-06-07T04:30:31,430 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-06-07T04:30:31,432 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-06-07T04:30:31,434 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-06-07T04:30:31,436 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-06-07T04:30:31,438 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-06-07T04:30:31,439 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-06-07T04:30:31,441 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-06-07T04:30:31,443 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-06-07T04:30:31,446 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2026-06-07T04:30:31,447 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-06-07T04:30:31,449 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-06-07T04:30:31,451 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-06-07T04:30:31,453 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled 2026-06-07T04:30:31,455 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2026-06-07T04:30:31,456 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-06-07T04:30:31,458 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-06-07T04:30:31,460 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-06-07T04:30:31,462 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2026-06-07T04:30:31,463 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2026-06-07T04:30:31,465 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2026-06-07T04:30:31,468 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,469 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,471 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,473 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,474 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,476 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,478 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,480 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,482 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,484 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,486 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,488 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,490 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,492 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,494 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,496 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,498 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,501 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,503 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,505 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,507 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,509 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,512 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,514 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,517 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,519 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-06-07T04:30:31,523 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2026-06-07T04:30:31,524 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,528 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,530 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,533 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,535 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,537 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,540 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,542 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,544 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,546 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,549 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,552 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,554 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,557 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,559 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,561 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,564 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,566 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,569 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,571 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,573 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,575 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,578 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,580 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,582 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,585 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,587 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,590 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,592 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,595 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,597 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,599 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,602 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,604 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,606 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,608 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,610 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,612 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,613 copying build/lib/galaxy/tools/bundled/data_source/diced.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-06-07T04:30:31,616 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2026-06-07T04:30:31,617 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-06-07T04:30:31,619 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-06-07T04:30:31,620 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-06-07T04:30:31,623 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-06-07T04:30:31,625 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-06-07T04:30:31,627 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-06-07T04:30:31,629 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-06-07T04:30:31,632 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2026-06-07T04:30:31,633 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-06-07T04:30:31,635 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-06-07T04:30:31,636 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-06-07T04:30:31,639 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:31,640 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:31,643 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:31,644 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:31,646 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:31,648 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-06-07T04:30:31,651 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2026-06-07T04:30:31,652 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,654 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,656 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,658 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,660 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,661 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,663 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,665 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,667 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,668 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,670 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,672 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,674 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,676 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,677 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,680 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,682 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,684 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,686 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,688 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,691 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,693 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,697 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,699 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,701 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,703 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,705 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,707 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,709 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,711 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,713 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,715 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,717 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,719 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-06-07T04:30:31,722 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,723 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,725 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,727 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,729 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,731 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,733 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,735 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,738 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-06-07T04:30:31,741 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:31,742 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:31,744 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:31,746 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:31,748 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:31,750 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:31,752 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:31,754 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:31,756 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:31,758 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-06-07T04:30:31,762 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2026-06-07T04:30:31,763 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,765 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,767 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,769 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,771 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,773 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,775 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,778 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,780 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,782 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,785 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,788 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,791 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,793 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,795 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,797 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,799 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,800 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,802 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,804 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,806 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,808 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,809 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,811 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,813 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,815 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,817 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,819 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,821 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,824 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,826 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,828 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,830 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,832 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,834 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,835 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,837 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,839 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,841 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,842 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,844 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,846 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,848 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,850 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,852 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,853 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,855 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,858 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2026-06-07T04:30:31,859 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-06-07T04:30:31,860 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-06-07T04:30:31,862 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-06-07T04:30:31,864 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-06-07T04:30:31,866 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-06-07T04:30:31,869 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-06-07T04:30:31,871 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-06-07T04:30:31,873 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-06-07T04:30:31,875 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-06-07T04:30:31,877 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,879 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,881 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,883 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,884 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,886 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,888 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,889 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,891 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,893 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,895 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,897 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,899 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,901 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,904 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,906 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,908 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,910 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,912 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,915 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,917 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-06-07T04:30:31,921 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2026-06-07T04:30:31,922 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/meme 2026-06-07T04:30:31,926 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2026-06-07T04:30:31,927 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,929 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,931 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,933 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,935 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,937 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,939 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,941 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,942 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,945 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,947 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,948 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,950 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,952 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,954 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,955 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,958 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,960 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,963 copying build/lib/galaxy/tools/bundled/interactive/Rprofile.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,965 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,967 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,970 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,972 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,974 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,976 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,978 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,980 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,982 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,984 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,986 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,988 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,990 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,992 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,994 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,996 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,998 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:31,999 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:32,001 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:32,004 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:32,006 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-06-07T04:30:32,009 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2026-06-07T04:30:32,010 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-06-07T04:30:32,012 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-06-07T04:30:32,014 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-06-07T04:30:32,016 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-06-07T04:30:32,018 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-06-07T04:30:32,021 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2026-06-07T04:30:32,022 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-06-07T04:30:32,023 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-06-07T04:30:32,025 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-06-07T04:30:32,029 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-06-07T04:30:32,030 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-06-07T04:30:32,032 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,034 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,040 copying build/lib/galaxy/tools/cross_product_flat.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,042 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,044 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,046 copying build/lib/galaxy/tools/cross_product_nested.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,048 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,050 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,052 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,054 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,055 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,057 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,060 creating build/bdist.linux-armv7l/wheel/galaxy/tools/fetch 2026-06-07T04:30:32,061 copying build/lib/galaxy/tools/fetch/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2026-06-07T04:30:32,063 copying build/lib/galaxy/tools/fetch/workbooks.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2026-06-07T04:30:32,065 copying build/lib/galaxy/tools/model_operation_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,068 copying build/lib/galaxy/tools/harmonize_two_collections_list_1.0.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,070 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,072 copying build/lib/galaxy/tools/nest_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,074 copying build/lib/galaxy/tools/keep_success_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,076 copying build/lib/galaxy/tools/filter_failed_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,078 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,080 copying build/lib/galaxy/tools/filter_from_file_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,083 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2026-06-07T04:30:32,084 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-06-07T04:30:32,086 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-06-07T04:30:32,087 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-06-07T04:30:32,089 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-06-07T04:30:32,091 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-06-07T04:30:32,093 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-06-07T04:30:32,095 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2026-06-07T04:30:32,096 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-06-07T04:30:32,098 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-06-07T04:30:32,102 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-06-07T04:30:32,104 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-06-07T04:30:32,106 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-06-07T04:30:32,108 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-06-07T04:30:32,110 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-06-07T04:30:32,113 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-06-07T04:30:32,114 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,116 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,119 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,122 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,124 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,127 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,128 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,131 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,133 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,135 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2026-06-07T04:30:32,136 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data 2026-06-07T04:30:32,140 copying build/lib/galaxy/tools/filter_null_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,142 copying build/lib/galaxy/tools/sample_sheet_to_tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,144 copying build/lib/galaxy/tools/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,146 copying build/lib/galaxy/tools/filter_empty_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,148 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,151 copying build/lib/galaxy/tools/execution_helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,153 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,155 copying build/lib/galaxy/tools/stock.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,157 copying build/lib/galaxy/tools/convert_sample_sheet.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,159 copying build/lib/galaxy/tools/keep_success_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,161 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2026-06-07T04:30:32,162 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2026-06-07T04:30:32,164 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2026-06-07T04:30:32,166 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,169 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,172 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2026-06-07T04:30:32,173 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/filters 2026-06-07T04:30:32,175 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-06-07T04:30:32,177 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2026-06-07T04:30:32,179 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2026-06-07T04:30:32,180 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util/galaxyops 2026-06-07T04:30:32,182 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2026-06-07T04:30:32,183 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2026-06-07T04:30:32,186 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2026-06-07T04:30:32,187 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/search 2026-06-07T04:30:32,191 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2026-06-07T04:30:32,192 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-06-07T04:30:32,193 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-06-07T04:30:32,195 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-06-07T04:30:32,199 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2026-06-07T04:30:32,200 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,202 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,204 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,206 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,209 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,212 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,214 copying build/lib/galaxy/managers/headers_encryption.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,216 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,219 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,221 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,223 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,226 copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,227 copying build/lib/galaxy/managers/credentials.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,230 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,232 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,236 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,238 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,240 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,243 copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,245 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,248 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,250 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,252 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,253 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,255 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,257 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,260 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,264 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,267 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,270 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,272 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,274 copying build/lib/galaxy/managers/object_store_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,276 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,279 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,281 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,284 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,286 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,288 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,291 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,293 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,295 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,297 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,299 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,302 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,305 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,307 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,310 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,312 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,315 copying build/lib/galaxy/managers/file_source_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,319 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,321 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,323 copying build/lib/galaxy/managers/workflow_completion.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,325 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,328 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,330 copying build/lib/galaxy/managers/landing.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,332 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,334 copying build/lib/galaxy/managers/tours.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,337 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,342 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,343 copying build/lib/galaxy/managers/_config_templates.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,346 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,349 copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,351 copying build/lib/galaxy/managers/agents.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,353 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,355 copying build/lib/galaxy/managers/chat.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,357 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,360 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-06-07T04:30:32,363 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2026-06-07T04:30:32,364 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-06-07T04:30:32,366 copying build/lib/galaxy/authnz/oidc.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-06-07T04:30:32,368 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-06-07T04:30:32,369 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-06-07T04:30:32,372 copying build/lib/galaxy/authnz/keycloak.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-06-07T04:30:32,374 copying build/lib/galaxy/authnz/cilogon.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-06-07T04:30:32,376 copying build/lib/galaxy/authnz/tapis.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-06-07T04:30:32,378 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-06-07T04:30:32,380 copying build/lib/galaxy/authnz/oidc_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-06-07T04:30:32,383 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2026-06-07T04:30:32,384 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-06-07T04:30:32,387 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-06-07T04:30:32,391 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-06-07T04:30:32,395 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2026-06-07T04:30:32,396 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/rules 2026-06-07T04:30:32,398 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2026-06-07T04:30:32,399 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,402 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,404 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,407 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,410 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,412 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,415 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,418 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,419 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,422 copying build/lib/galaxy/jobs/runners/gcp_batch.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,424 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,427 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,429 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,431 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,434 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2026-06-07T04:30:32,435 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-06-07T04:30:32,438 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-06-07T04:30:32,439 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-06-07T04:30:32,441 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,444 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-06-07T04:30:32,447 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2026-06-07T04:30:32,448 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2026-06-07T04:30:32,450 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2026-06-07T04:30:32,452 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2026-06-07T04:30:32,454 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:32,455 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:32,457 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:32,459 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:32,461 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:32,463 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:32,464 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-06-07T04:30:32,467 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2026-06-07T04:30:32,468 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-06-07T04:30:32,470 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-06-07T04:30:32,472 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-06-07T04:30:32,474 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-06-07T04:30:32,475 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-06-07T04:30:32,477 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-06-07T04:30:32,479 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-06-07T04:30:32,481 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2026-06-07T04:30:32,482 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-06-07T04:30:32,485 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-06-07T04:30:32,486 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-06-07T04:30:32,488 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-06-07T04:30:32,490 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2026-06-07T04:30:32,491 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/condor 2026-06-07T04:30:32,494 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-06-07T04:30:32,496 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/gcp_batch 2026-06-07T04:30:32,497 copying build/lib/galaxy/jobs/runners/util/gcp_batch/helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/gcp_batch 2026-06-07T04:30:32,499 copying build/lib/galaxy/jobs/runners/util/gcp_batch/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/gcp_batch 2026-06-07T04:30:32,501 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-06-07T04:30:32,503 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-06-07T04:30:32,505 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-06-07T04:30:32,507 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-06-07T04:30:32,509 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-06-07T04:30:32,512 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2026-06-07T04:30:32,513 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-06-07T04:30:32,515 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-06-07T04:30:32,516 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-06-07T04:30:32,519 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-06-07T04:30:32,521 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-06-07T04:30:32,523 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-06-07T04:30:32,525 copying build/lib/galaxy/jobs/job_destination.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-06-07T04:30:32,527 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-06-07T04:30:32,529 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2026-06-07T04:30:32,530 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-06-07T04:30:32,533 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-06-07T04:30:32,535 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-06-07T04:30:32,536 copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-06-07T04:30:32,539 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2026-06-07T04:30:32,540 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/webhooks 2026-06-07T04:30:32,542 creating build/bdist.linux-armv7l/wheel/galaxy/work 2026-06-07T04:30:32,543 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-06-07T04:30:32,545 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-06-07T04:30:32,547 creating build/bdist.linux-armv7l/wheel/galaxy/agents 2026-06-07T04:30:32,548 copying build/lib/galaxy/agents/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-06-07T04:30:32,551 copying build/lib/galaxy/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-06-07T04:30:32,553 copying build/lib/galaxy/agents/tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-06-07T04:30:32,555 copying build/lib/galaxy/agents/orchestrator.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-06-07T04:30:32,557 copying build/lib/galaxy/agents/custom_tool.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-06-07T04:30:32,560 copying build/lib/galaxy/agents/error_analysis.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-06-07T04:30:32,562 copying build/lib/galaxy/agents/router.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-06-07T04:30:32,564 copying build/lib/galaxy/agents/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-06-07T04:30:32,567 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2026-06-07T04:30:32,568 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-06-07T04:30:32,570 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-06-07T04:30:32,572 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-06-07T04:30:32,574 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2026-06-07T04:30:32,575 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-06-07T04:30:32,578 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-06-07T04:30:32,580 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2026-06-07T04:30:32,581 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-06-07T04:30:32,583 copying build/lib/galaxy/visualization/plugins/datasource_testing.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-06-07T04:30:32,585 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-06-07T04:30:32,587 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-06-07T04:30:32,589 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-06-07T04:30:32,591 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-06-07T04:30:32,594 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2026-06-07T04:30:32,595 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-06-07T04:30:32,597 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-06-07T04:30:32,599 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:32,600 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:32,602 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:32,604 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:32,606 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:32,608 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-06-07T04:30:32,610 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-06-07T04:30:32,612 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-06-07T04:30:32,614 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-06-07T04:30:32,617 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy 2026-06-07T04:30:32,619 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2026-06-07T04:30:32,621 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/completion_hooks 2026-06-07T04:30:32,622 copying build/lib/galaxy/workflow/completion_hooks/notification.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-06-07T04:30:32,624 copying build/lib/galaxy/workflow/completion_hooks/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-06-07T04:30:32,626 copying build/lib/galaxy/workflow/completion_hooks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-06-07T04:30:32,628 copying build/lib/galaxy/workflow/completion_hooks/export.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-06-07T04:30:32,630 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,632 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2026-06-07T04:30:32,633 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2026-06-07T04:30:32,635 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2026-06-07T04:30:32,637 copying build/lib/galaxy/workflow/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,639 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,642 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,644 copying build/lib/galaxy/workflow/completion_monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,647 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2026-06-07T04:30:32,647 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports 2026-06-07T04:30:32,650 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2026-06-07T04:30:32,651 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2026-06-07T04:30:32,653 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2026-06-07T04:30:32,654 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,658 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,661 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,664 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2026-06-07T04:30:32,665 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2026-06-07T04:30:32,667 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2026-06-07T04:30:32,669 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,671 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,674 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2026-06-07T04:30:32,675 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-06-07T04:30:32,677 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-06-07T04:30:32,679 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-06-07T04:30:32,682 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,684 copying build/lib/galaxy/workflow/workflow_parameter_input_definitions.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-06-07T04:30:32,686 creating build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2026-06-07T04:30:32,687 copying build/lib/galaxy/short_term_storage/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/short_term_storage 2026-06-07T04:30:32,690 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2026-06-07T04:30:32,692 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2026-06-07T04:30:32,693 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-06-07T04:30:32,696 copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-06-07T04:30:32,698 copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-06-07T04:30:32,700 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-06-07T04:30:32,702 copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-06-07T04:30:32,703 copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-06-07T04:30:32,705 running install_egg_info 2026-06-07T04:30:32,710 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_app-26.0.1-py3.11.egg-info 2026-06-07T04:30:32,725 running install_scripts 2026-06-07T04:30:32,741 creating build/bdist.linux-armv7l/wheel/galaxy_app-26.0.1.dist-info/WHEEL 2026-06-07T04:30:32,743 creating '/tmp/pip-wheel-0201m2vy/.tmp-1yvv6q5y/galaxy_app-26.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-07T04:30:32,746 adding 'galaxy/__init__.py' 2026-06-07T04:30:32,752 adding 'galaxy/app.py' 2026-06-07T04:30:32,753 adding 'galaxy/config_watchers.py' 2026-06-07T04:30:32,755 adding 'galaxy/di.py' 2026-06-07T04:30:32,757 adding 'galaxy/main.py' 2026-06-07T04:30:32,758 adding 'galaxy/main_config.py' 2026-06-07T04:30:32,760 adding 'galaxy/py.typed' 2026-06-07T04:30:32,762 adding 'galaxy/queue_worker.py' 2026-06-07T04:30:32,763 adding 'galaxy/queues.py' 2026-06-07T04:30:32,765 adding 'galaxy/structured_app.py' 2026-06-07T04:30:32,767 adding 'galaxy/actions/__init__.py' 2026-06-07T04:30:32,769 adding 'galaxy/actions/library.py' 2026-06-07T04:30:32,771 adding 'galaxy/agents/__init__.py' 2026-06-07T04:30:32,775 adding 'galaxy/agents/base.py' 2026-06-07T04:30:32,777 adding 'galaxy/agents/custom_tool.py' 2026-06-07T04:30:32,779 adding 'galaxy/agents/error_analysis.py' 2026-06-07T04:30:32,781 adding 'galaxy/agents/orchestrator.py' 2026-06-07T04:30:32,783 adding 'galaxy/agents/registry.py' 2026-06-07T04:30:32,785 adding 'galaxy/agents/router.py' 2026-06-07T04:30:32,788 adding 'galaxy/agents/tools.py' 2026-06-07T04:30:32,789 adding 'galaxy/app_unittest_utils/__init__.py' 2026-06-07T04:30:32,792 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2026-06-07T04:30:32,793 adding 'galaxy/app_unittest_utils/toolbox_support.py' 2026-06-07T04:30:32,795 adding 'galaxy/app_unittest_utils/tools_support.py' 2026-06-07T04:30:32,797 adding 'galaxy/authnz/__init__.py' 2026-06-07T04:30:32,798 adding 'galaxy/authnz/cilogon.py' 2026-06-07T04:30:32,799 adding 'galaxy/authnz/keycloak.py' 2026-06-07T04:30:32,802 adding 'galaxy/authnz/managers.py' 2026-06-07T04:30:32,803 adding 'galaxy/authnz/oidc.py' 2026-06-07T04:30:32,805 adding 'galaxy/authnz/oidc_utils.py' 2026-06-07T04:30:32,810 adding 'galaxy/authnz/psa_authnz.py' 2026-06-07T04:30:32,812 adding 'galaxy/authnz/tapis.py' 2026-06-07T04:30:32,813 adding 'galaxy/authnz/util.py' 2026-06-07T04:30:32,815 adding 'galaxy/carbon_emissions/__init__.py' 2026-06-07T04:30:32,817 adding 'galaxy/carbon_emissions/carbon_intensity.csv' 2026-06-07T04:30:32,819 adding 'galaxy/celery/__init__.py' 2026-06-07T04:30:32,820 adding 'galaxy/celery/_serialization.py' 2026-06-07T04:30:32,822 adding 'galaxy/celery/base_task.py' 2026-06-07T04:30:32,825 adding 'galaxy/celery/tasks.py' 2026-06-07T04:30:32,828 adding 'galaxy/dependencies/__init__.py' 2026-06-07T04:30:32,830 adding 'galaxy/dependencies/conditional-constraints.txt' 2026-06-07T04:30:32,831 adding 'galaxy/dependencies/conditional-requirements.txt' 2026-06-07T04:30:32,833 adding 'galaxy/dependencies/dev-requirements.txt' 2026-06-07T04:30:32,834 adding 'galaxy/dependencies/lint-requirements.txt' 2026-06-07T04:30:32,836 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2026-06-07T04:30:32,838 adding 'galaxy/dependencies/pinned-requirements.txt' 2026-06-07T04:30:32,839 adding 'galaxy/dependencies/pinned-test-requirements.txt' 2026-06-07T04:30:32,841 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2026-06-07T04:30:32,842 adding 'galaxy/dependencies/script.py' 2026-06-07T04:30:32,844 adding 'galaxy/dependencies/update.sh' 2026-06-07T04:30:32,845 adding 'galaxy/dependencies/update_lint_requirements.sh' 2026-06-07T04:30:32,846 adding 'galaxy/forms/__init__.py' 2026-06-07T04:30:32,848 adding 'galaxy/forms/forms.py' 2026-06-07T04:30:32,866 adding 'galaxy/jobs/__init__.py' 2026-06-07T04:30:32,869 adding 'galaxy/jobs/command_factory.py' 2026-06-07T04:30:32,877 adding 'galaxy/jobs/dynamic_tool_destination.py' 2026-06-07T04:30:32,884 adding 'galaxy/jobs/handler.py' 2026-06-07T04:30:32,886 adding 'galaxy/jobs/job_destination.py' 2026-06-07T04:30:32,887 adding 'galaxy/jobs/manager.py' 2026-06-07T04:30:32,889 adding 'galaxy/jobs/mapper.py' 2026-06-07T04:30:32,891 adding 'galaxy/jobs/rule_helper.py' 2026-06-07T04:30:32,893 adding 'galaxy/jobs/stock_rules.py' 2026-06-07T04:30:32,894 adding 'galaxy/jobs/rules/__init__.py' 2026-06-07T04:30:32,900 adding 'galaxy/jobs/runners/__init__.py' 2026-06-07T04:30:32,903 adding 'galaxy/jobs/runners/aws.py' 2026-06-07T04:30:32,905 adding 'galaxy/jobs/runners/chronos.py' 2026-06-07T04:30:32,907 adding 'galaxy/jobs/runners/cli.py' 2026-06-07T04:30:32,909 adding 'galaxy/jobs/runners/condor.py' 2026-06-07T04:30:32,912 adding 'galaxy/jobs/runners/drmaa.py' 2026-06-07T04:30:32,915 adding 'galaxy/jobs/runners/gcp_batch.py' 2026-06-07T04:30:32,918 adding 'galaxy/jobs/runners/godocker.py' 2026-06-07T04:30:32,924 adding 'galaxy/jobs/runners/kubernetes.py' 2026-06-07T04:30:32,926 adding 'galaxy/jobs/runners/local.py' 2026-06-07T04:30:32,929 adding 'galaxy/jobs/runners/pbs.py' 2026-06-07T04:30:32,936 adding 'galaxy/jobs/runners/pulsar.py' 2026-06-07T04:30:32,938 adding 'galaxy/jobs/runners/slurm.py' 2026-06-07T04:30:32,939 adding 'galaxy/jobs/runners/state_handler_factory.py' 2026-06-07T04:30:32,941 adding 'galaxy/jobs/runners/tasks.py' 2026-06-07T04:30:32,945 adding 'galaxy/jobs/runners/univa.py' 2026-06-07T04:30:32,947 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2026-06-07T04:30:32,948 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2026-06-07T04:30:32,950 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2026-06-07T04:30:32,951 adding 'galaxy/jobs/runners/util/__init__.py' 2026-06-07T04:30:32,953 adding 'galaxy/jobs/runners/util/env.py' 2026-06-07T04:30:32,954 adding 'galaxy/jobs/runners/util/external.py' 2026-06-07T04:30:32,955 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2026-06-07T04:30:32,956 adding 'galaxy/jobs/runners/util/kill.py' 2026-06-07T04:30:32,958 adding 'galaxy/jobs/runners/util/process_groups.py' 2026-06-07T04:30:32,959 adding 'galaxy/jobs/runners/util/pykube_util.py' 2026-06-07T04:30:32,961 adding 'galaxy/jobs/runners/util/sudo.py' 2026-06-07T04:30:32,962 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2026-06-07T04:30:32,964 adding 'galaxy/jobs/runners/util/cli/factory.py' 2026-06-07T04:30:32,965 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2026-06-07T04:30:32,967 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2026-06-07T04:30:32,968 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2026-06-07T04:30:32,970 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2026-06-07T04:30:32,971 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2026-06-07T04:30:32,972 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2026-06-07T04:30:32,974 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2026-06-07T04:30:32,976 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2026-06-07T04:30:32,977 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2026-06-07T04:30:32,979 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2026-06-07T04:30:32,981 adding 'galaxy/jobs/runners/util/gcp_batch/__init__.py' 2026-06-07T04:30:32,983 adding 'galaxy/jobs/runners/util/gcp_batch/helpers.py' 2026-06-07T04:30:32,984 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2026-06-07T04:30:32,986 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2026-06-07T04:30:32,987 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2026-06-07T04:30:32,989 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2026-06-07T04:30:32,990 adding 'galaxy/jobs/splitters/__init__.py' 2026-06-07T04:30:32,991 adding 'galaxy/jobs/splitters/basic.py' 2026-06-07T04:30:32,993 adding 'galaxy/jobs/splitters/multi.py' 2026-06-07T04:30:32,996 adding 'galaxy/managers/__init__.py' 2026-06-07T04:30:32,998 adding 'galaxy/managers/_config_templates.py' 2026-06-07T04:30:33,000 adding 'galaxy/managers/agents.py' 2026-06-07T04:30:33,001 adding 'galaxy/managers/annotatable.py' 2026-06-07T04:30:33,003 adding 'galaxy/managers/api_keys.py' 2026-06-07T04:30:33,010 adding 'galaxy/managers/base.py' 2026-06-07T04:30:33,012 adding 'galaxy/managers/chat.py' 2026-06-07T04:30:33,014 adding 'galaxy/managers/citations.py' 2026-06-07T04:30:33,018 adding 'galaxy/managers/collections.py' 2026-06-07T04:30:33,021 adding 'galaxy/managers/collections_util.py' 2026-06-07T04:30:33,022 adding 'galaxy/managers/configuration.py' 2026-06-07T04:30:33,024 adding 'galaxy/managers/context.py' 2026-06-07T04:30:33,026 adding 'galaxy/managers/credentials.py' 2026-06-07T04:30:33,031 adding 'galaxy/managers/datasets.py' 2026-06-07T04:30:33,033 adding 'galaxy/managers/datatypes.py' 2026-06-07T04:30:33,035 adding 'galaxy/managers/dbkeys.py' 2026-06-07T04:30:33,036 adding 'galaxy/managers/deletable.py' 2026-06-07T04:30:33,038 adding 'galaxy/managers/display_applications.py' 2026-06-07T04:30:33,039 adding 'galaxy/managers/executables.py' 2026-06-07T04:30:33,040 adding 'galaxy/managers/export_tracker.py' 2026-06-07T04:30:33,044 adding 'galaxy/managers/file_source_instances.py' 2026-06-07T04:30:33,047 adding 'galaxy/managers/folders.py' 2026-06-07T04:30:33,048 adding 'galaxy/managers/forms.py' 2026-06-07T04:30:33,049 adding 'galaxy/managers/genomes.py' 2026-06-07T04:30:33,051 adding 'galaxy/managers/group_roles.py' 2026-06-07T04:30:33,052 adding 'galaxy/managers/group_users.py' 2026-06-07T04:30:33,054 adding 'galaxy/managers/groups.py' 2026-06-07T04:30:33,057 adding 'galaxy/managers/hdas.py' 2026-06-07T04:30:33,059 adding 'galaxy/managers/hdcas.py' 2026-06-07T04:30:33,061 adding 'galaxy/managers/headers_encryption.py' 2026-06-07T04:30:33,067 adding 'galaxy/managers/histories.py' 2026-06-07T04:30:33,070 adding 'galaxy/managers/history_contents.py' 2026-06-07T04:30:33,073 adding 'galaxy/managers/interactivetool.py' 2026-06-07T04:30:33,074 adding 'galaxy/managers/item_tags.py' 2026-06-07T04:30:33,076 adding 'galaxy/managers/job_connections.py' 2026-06-07T04:30:33,087 adding 'galaxy/managers/jobs.py' 2026-06-07T04:30:33,089 adding 'galaxy/managers/landing.py' 2026-06-07T04:30:33,091 adding 'galaxy/managers/lddas.py' 2026-06-07T04:30:33,093 adding 'galaxy/managers/libraries.py' 2026-06-07T04:30:33,095 adding 'galaxy/managers/library_datasets.py' 2026-06-07T04:30:33,106 adding 'galaxy/managers/licenses.json' 2026-06-07T04:30:33,109 adding 'galaxy/managers/licenses.py' 2026-06-07T04:30:33,110 adding 'galaxy/managers/markdown_export_base.css' 2026-06-07T04:30:33,112 adding 'galaxy/managers/markdown_parse.py' 2026-06-07T04:30:33,118 adding 'galaxy/managers/markdown_util.py' 2026-06-07T04:30:33,120 adding 'galaxy/managers/model_stores.py' 2026-06-07T04:30:33,124 adding 'galaxy/managers/notification.py' 2026-06-07T04:30:33,126 adding 'galaxy/managers/object_store_instances.py' 2026-06-07T04:30:33,129 adding 'galaxy/managers/pages.py' 2026-06-07T04:30:33,131 adding 'galaxy/managers/quotas.py' 2026-06-07T04:30:33,133 adding 'galaxy/managers/ratable.py' 2026-06-07T04:30:33,135 adding 'galaxy/managers/rbac_secured.py' 2026-06-07T04:30:33,137 adding 'galaxy/managers/remote_files.py' 2026-06-07T04:30:33,138 adding 'galaxy/managers/roles.py' 2026-06-07T04:30:33,139 adding 'galaxy/managers/secured.py' 2026-06-07T04:30:33,141 adding 'galaxy/managers/session.py' 2026-06-07T04:30:33,144 adding 'galaxy/managers/sharable.py' 2026-06-07T04:30:33,145 adding 'galaxy/managers/taggable.py' 2026-06-07T04:30:33,147 adding 'galaxy/managers/tags.py' 2026-06-07T04:30:33,148 adding 'galaxy/managers/tasks.py' 2026-06-07T04:30:33,149 adding 'galaxy/managers/tool_data.py' 2026-06-07T04:30:33,151 adding 'galaxy/managers/tools.py' 2026-06-07T04:30:33,153 adding 'galaxy/managers/tours.py' 2026-06-07T04:30:33,158 adding 'galaxy/managers/users.py' 2026-06-07T04:30:33,160 adding 'galaxy/managers/visualizations.py' 2026-06-07T04:30:33,161 adding 'galaxy/managers/workflow_completion.py' 2026-06-07T04:30:33,174 adding 'galaxy/managers/workflows.py' 2026-06-07T04:30:33,177 adding 'galaxy/short_term_storage/__init__.py' 2026-06-07T04:30:33,179 adding 'galaxy/tool_shed/__init__.py' 2026-06-07T04:30:33,180 adding 'galaxy/tool_shed/cache.py' 2026-06-07T04:30:33,181 adding 'galaxy/tool_shed/repository_type.py' 2026-06-07T04:30:33,183 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2026-06-07T04:30:33,184 adding 'galaxy/tool_shed/galaxy_install/client.py' 2026-06-07T04:30:33,189 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2026-06-07T04:30:33,194 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2026-06-07T04:30:33,196 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2026-06-07T04:30:33,198 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2026-06-07T04:30:33,200 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2026-06-07T04:30:33,201 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2026-06-07T04:30:33,205 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2026-06-07T04:30:33,207 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2026-06-07T04:30:33,208 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2026-06-07T04:30:33,212 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2026-06-07T04:30:33,213 adding 'galaxy/tool_shed/metadata/__init__.py' 2026-06-07T04:30:33,219 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2026-06-07T04:30:33,221 adding 'galaxy/tool_shed/tools/__init__.py' 2026-06-07T04:30:33,223 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2026-06-07T04:30:33,224 adding 'galaxy/tool_shed/tools/tool_validator.py' 2026-06-07T04:30:33,226 adding 'galaxy/tool_shed/unittest_utils/__init__.py' 2026-06-07T04:30:33,228 adding 'galaxy/tool_shed/util/__init__.py' 2026-06-07T04:30:33,230 adding 'galaxy/tool_shed/util/basic_util.py' 2026-06-07T04:30:33,231 adding 'galaxy/tool_shed/util/container_util.py' 2026-06-07T04:30:33,233 adding 'galaxy/tool_shed/util/dependency_display.py' 2026-06-07T04:30:33,235 adding 'galaxy/tool_shed/util/hg_util.py' 2026-06-07T04:30:33,236 adding 'galaxy/tool_shed/util/metadata_util.py' 2026-06-07T04:30:33,240 adding 'galaxy/tool_shed/util/repository_util.py' 2026-06-07T04:30:33,242 adding 'galaxy/tool_shed/util/shed_util_common.py' 2026-06-07T04:30:33,244 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2026-06-07T04:30:33,245 adding 'galaxy/tool_shed/util/tool_util.py' 2026-06-07T04:30:33,249 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2026-06-07T04:30:33,276 adding 'galaxy/tools/__init__.py' 2026-06-07T04:30:33,279 adding 'galaxy/tools/_types.py' 2026-06-07T04:30:33,280 adding 'galaxy/tools/apply_rules.xml' 2026-06-07T04:30:33,282 adding 'galaxy/tools/biotools.py' 2026-06-07T04:30:33,283 adding 'galaxy/tools/build_list.xml' 2026-06-07T04:30:33,284 adding 'galaxy/tools/build_list_1.2.0.xml' 2026-06-07T04:30:33,286 adding 'galaxy/tools/cache.py' 2026-06-07T04:30:33,287 adding 'galaxy/tools/convert_sample_sheet.xml' 2026-06-07T04:30:33,289 adding 'galaxy/tools/cross_product_flat.xml' 2026-06-07T04:30:33,290 adding 'galaxy/tools/cross_product_nested.xml' 2026-06-07T04:30:33,294 adding 'galaxy/tools/data_fetch.py' 2026-06-07T04:30:33,295 adding 'galaxy/tools/data_fetch.xml' 2026-06-07T04:30:33,297 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2026-06-07T04:30:33,299 adding 'galaxy/tools/errors.py' 2026-06-07T04:30:33,305 adding 'galaxy/tools/evaluation.py' 2026-06-07T04:30:33,306 adding 'galaxy/tools/exception_handling.py' 2026-06-07T04:30:33,310 adding 'galaxy/tools/execute.py' 2026-06-07T04:30:33,312 adding 'galaxy/tools/execution_helpers.py' 2026-06-07T04:30:33,314 adding 'galaxy/tools/extract_dataset.xml' 2026-06-07T04:30:33,315 adding 'galaxy/tools/filter_empty_collection.xml' 2026-06-07T04:30:33,316 adding 'galaxy/tools/filter_empty_collection_1.1.0.xml' 2026-06-07T04:30:33,318 adding 'galaxy/tools/filter_failed_collection.xml' 2026-06-07T04:30:33,319 adding 'galaxy/tools/filter_failed_collection_1.1.0.xml' 2026-06-07T04:30:33,321 adding 'galaxy/tools/filter_from_file.xml' 2026-06-07T04:30:33,322 adding 'galaxy/tools/filter_from_file_1.1.0.xml' 2026-06-07T04:30:33,323 adding 'galaxy/tools/filter_null.xml' 2026-06-07T04:30:33,325 adding 'galaxy/tools/filter_null_1.1.0.xml' 2026-06-07T04:30:33,326 adding 'galaxy/tools/flatten_collection.xml' 2026-06-07T04:30:33,328 adding 'galaxy/tools/harmonize_two_collections_list.xml' 2026-06-07T04:30:33,329 adding 'galaxy/tools/harmonize_two_collections_list_1.0.0.xml' 2026-06-07T04:30:33,330 adding 'galaxy/tools/keep_success_collection.xml' 2026-06-07T04:30:33,332 adding 'galaxy/tools/keep_success_collection_1.1.0.xml' 2026-06-07T04:30:33,333 adding 'galaxy/tools/merge_collection.xml' 2026-06-07T04:30:33,335 adding 'galaxy/tools/model_operation_macros.xml' 2026-06-07T04:30:33,336 adding 'galaxy/tools/nest_collection.xml' 2026-06-07T04:30:33,339 adding 'galaxy/tools/recommendations.py' 2026-06-07T04:30:33,340 adding 'galaxy/tools/relabel_from_file.xml' 2026-06-07T04:30:33,342 adding 'galaxy/tools/remote_tool_eval.py' 2026-06-07T04:30:33,343 adding 'galaxy/tools/repositories.py' 2026-06-07T04:30:33,345 adding 'galaxy/tools/sample_sheet_to_tabular.xml' 2026-06-07T04:30:33,346 adding 'galaxy/tools/sort_collection_list.xml' 2026-06-07T04:30:33,348 adding 'galaxy/tools/special_tools.py' 2026-06-07T04:30:33,349 adding 'galaxy/tools/split_paired_and_unpaired.xml' 2026-06-07T04:30:33,350 adding 'galaxy/tools/stock.py' 2026-06-07T04:30:33,352 adding 'galaxy/tools/tag_collection_from_file.xml' 2026-06-07T04:30:33,353 adding 'galaxy/tools/unzip_collection.xml' 2026-06-07T04:30:33,357 adding 'galaxy/tools/wrappers.py' 2026-06-07T04:30:33,358 adding 'galaxy/tools/zip_collection.xml' 2026-06-07T04:30:33,367 adding 'galaxy/tools/actions/__init__.py' 2026-06-07T04:30:33,368 adding 'galaxy/tools/actions/data_manager.py' 2026-06-07T04:30:33,370 adding 'galaxy/tools/actions/data_source.py' 2026-06-07T04:30:33,371 adding 'galaxy/tools/actions/history_imp_exp.py' 2026-06-07T04:30:33,373 adding 'galaxy/tools/actions/metadata.py' 2026-06-07T04:30:33,375 adding 'galaxy/tools/actions/model_operations.py' 2026-06-07T04:30:33,376 adding 'galaxy/tools/actions/upload.py' 2026-06-07T04:30:33,379 adding 'galaxy/tools/actions/upload_common.py' 2026-06-07T04:30:33,381 adding 'galaxy/tools/bundled/__init__.py' 2026-06-07T04:30:33,382 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2026-06-07T04:30:33,384 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2026-06-07T04:30:33,386 adding 'galaxy/tools/bundled/data_source/__init__.py' 2026-06-07T04:30:33,387 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2026-06-07T04:30:33,389 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2026-06-07T04:30:33,390 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2026-06-07T04:30:33,391 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2026-06-07T04:30:33,393 adding 'galaxy/tools/bundled/data_source/data_source.py' 2026-06-07T04:30:33,394 adding 'galaxy/tools/bundled/data_source/diced.xml' 2026-06-07T04:30:33,395 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2026-06-07T04:30:33,397 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2026-06-07T04:30:33,398 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2026-06-07T04:30:33,399 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2026-06-07T04:30:33,401 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2026-06-07T04:30:33,402 adding 'galaxy/tools/bundled/data_source/genbank.py' 2026-06-07T04:30:33,403 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2026-06-07T04:30:33,405 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2026-06-07T04:30:33,406 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2026-06-07T04:30:33,407 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2026-06-07T04:30:33,408 adding 'galaxy/tools/bundled/data_source/import.py' 2026-06-07T04:30:33,410 adding 'galaxy/tools/bundled/data_source/import.xml' 2026-06-07T04:30:33,411 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2026-06-07T04:30:33,413 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2026-06-07T04:30:33,414 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2026-06-07T04:30:33,415 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2026-06-07T04:30:33,417 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2026-06-07T04:30:33,418 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2026-06-07T04:30:33,420 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2026-06-07T04:30:33,421 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2026-06-07T04:30:33,422 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2026-06-07T04:30:33,423 adding 'galaxy/tools/bundled/data_source/sra.xml' 2026-06-07T04:30:33,425 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2026-06-07T04:30:33,426 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2026-06-07T04:30:33,427 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2026-06-07T04:30:33,430 adding 'galaxy/tools/bundled/data_source/upload.py' 2026-06-07T04:30:33,432 adding 'galaxy/tools/bundled/data_source/upload.xml' 2026-06-07T04:30:33,433 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2026-06-07T04:30:33,434 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2026-06-07T04:30:33,435 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2026-06-07T04:30:33,436 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2026-06-07T04:30:33,438 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2026-06-07T04:30:33,439 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2026-06-07T04:30:33,441 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2026-06-07T04:30:33,442 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2026-06-07T04:30:33,444 adding 'galaxy/tools/bundled/extract/__init__.py' 2026-06-07T04:30:33,446 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2026-06-07T04:30:33,448 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2026-06-07T04:30:33,449 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2026-06-07T04:30:33,451 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2026-06-07T04:30:33,454 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2026-06-07T04:30:33,455 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2026-06-07T04:30:33,456 adding 'galaxy/tools/bundled/filters/__init__.py' 2026-06-07T04:30:33,457 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2026-06-07T04:30:33,459 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2026-06-07T04:30:33,460 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2026-06-07T04:30:33,461 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2026-06-07T04:30:33,463 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2026-06-07T04:30:33,464 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2026-06-07T04:30:33,465 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2026-06-07T04:30:33,467 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2026-06-07T04:30:33,468 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2026-06-07T04:30:33,470 adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py' 2026-06-07T04:30:33,471 adding 'galaxy/tools/bundled/filters/catWrapper.xml' 2026-06-07T04:30:33,472 adding 'galaxy/tools/bundled/filters/changeCase.pl' 2026-06-07T04:30:33,473 adding 'galaxy/tools/bundled/filters/changeCase.xml' 2026-06-07T04:30:33,475 adding 'galaxy/tools/bundled/filters/commWrapper.pl' 2026-06-07T04:30:33,476 adding 'galaxy/tools/bundled/filters/commWrapper.xml' 2026-06-07T04:30:33,477 adding 'galaxy/tools/bundled/filters/compare.xml' 2026-06-07T04:30:33,479 adding 'galaxy/tools/bundled/filters/condense_characters.pl' 2026-06-07T04:30:33,480 adding 'galaxy/tools/bundled/filters/condense_characters.xml' 2026-06-07T04:30:33,481 adding 'galaxy/tools/bundled/filters/convert_characters.py' 2026-06-07T04:30:33,482 adding 'galaxy/tools/bundled/filters/convert_characters.xml' 2026-06-07T04:30:33,484 adding 'galaxy/tools/bundled/filters/cutWrapper.pl' 2026-06-07T04:30:33,485 adding 'galaxy/tools/bundled/filters/cutWrapper.xml' 2026-06-07T04:30:33,486 adding 'galaxy/tools/bundled/filters/fileGrep.xml' 2026-06-07T04:30:33,487 adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl' 2026-06-07T04:30:33,489 adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml' 2026-06-07T04:30:33,490 adding 'galaxy/tools/bundled/filters/gff2bed.xml' 2026-06-07T04:30:33,491 adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py' 2026-06-07T04:30:33,493 adding 'galaxy/tools/bundled/filters/grep.xml' 2026-06-07T04:30:33,494 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2026-06-07T04:30:33,496 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2026-06-07T04:30:33,497 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2026-06-07T04:30:33,498 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2026-06-07T04:30:33,501 adding 'galaxy/tools/bundled/filters/join.py' 2026-06-07T04:30:33,502 adding 'galaxy/tools/bundled/filters/joiner.xml' 2026-06-07T04:30:33,504 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2026-06-07T04:30:33,505 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2026-06-07T04:30:33,506 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2026-06-07T04:30:33,508 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2026-06-07T04:30:33,509 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2026-06-07T04:30:33,510 adding 'galaxy/tools/bundled/filters/mergeCols.xml' 2026-06-07T04:30:33,511 adding 'galaxy/tools/bundled/filters/pasteWrapper.xml' 2026-06-07T04:30:33,513 adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py' 2026-06-07T04:30:33,514 adding 'galaxy/tools/bundled/filters/randomlines.py' 2026-06-07T04:30:33,515 adding 'galaxy/tools/bundled/filters/randomlines.xml' 2026-06-07T04:30:33,517 adding 'galaxy/tools/bundled/filters/remove_beginning.xml' 2026-06-07T04:30:33,518 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py' 2026-06-07T04:30:33,519 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml' 2026-06-07T04:30:33,525 adding 'galaxy/tools/bundled/filters/sff_extract.py' 2026-06-07T04:30:33,527 adding 'galaxy/tools/bundled/filters/sff_extractor.xml' 2026-06-07T04:30:33,528 adding 'galaxy/tools/bundled/filters/sorter.xml' 2026-06-07T04:30:33,530 adding 'galaxy/tools/bundled/filters/tailWrapper.xml' 2026-06-07T04:30:33,531 adding 'galaxy/tools/bundled/filters/trimmer.py' 2026-06-07T04:30:33,532 adding 'galaxy/tools/bundled/filters/trimmer.xml' 2026-06-07T04:30:33,534 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py' 2026-06-07T04:30:33,535 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml' 2026-06-07T04:30:33,537 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py' 2026-06-07T04:30:33,538 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml' 2026-06-07T04:30:33,540 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py' 2026-06-07T04:30:33,541 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml' 2026-06-07T04:30:33,542 adding 'galaxy/tools/bundled/filters/uniq.py' 2026-06-07T04:30:33,544 adding 'galaxy/tools/bundled/filters/uniq.xml' 2026-06-07T04:30:33,545 adding 'galaxy/tools/bundled/filters/wc_gnu.xml' 2026-06-07T04:30:33,547 adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml' 2026-06-07T04:30:33,548 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py' 2026-06-07T04:30:33,549 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml' 2026-06-07T04:30:33,551 adding 'galaxy/tools/bundled/filters/gff/__init__.py' 2026-06-07T04:30:33,552 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py' 2026-06-07T04:30:33,554 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml' 2026-06-07T04:30:33,556 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py' 2026-06-07T04:30:33,557 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml' 2026-06-07T04:30:33,559 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py' 2026-06-07T04:30:33,560 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml' 2026-06-07T04:30:33,561 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py' 2026-06-07T04:30:33,562 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml' 2026-06-07T04:30:33,564 adding 'galaxy/tools/bundled/interactive/Rprofile.R' 2026-06-07T04:30:33,565 adding 'galaxy/tools/bundled/interactive/default_notebook.ipynb' 2026-06-07T04:30:33,567 adding 'galaxy/tools/bundled/interactive/interactivetool_askomics.xml' 2026-06-07T04:30:33,568 adding 'galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml' 2026-06-07T04:30:33,569 adding 'galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml' 2026-06-07T04:30:33,571 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml' 2026-06-07T04:30:33,572 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml' 2026-06-07T04:30:33,574 adding 'galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml' 2026-06-07T04:30:33,575 adding 'galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml' 2026-06-07T04:30:33,576 adding 'galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml' 2026-06-07T04:30:33,578 adding 'galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml' 2026-06-07T04:30:33,579 adding 'galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml' 2026-06-07T04:30:33,581 adding 'galaxy/tools/bundled/interactive/interactivetool_higlass.xml' 2026-06-07T04:30:33,582 adding 'galaxy/tools/bundled/interactive/interactivetool_ilastik.xml' 2026-06-07T04:30:33,584 adding 'galaxy/tools/bundled/interactive/interactivetool_isee.xml' 2026-06-07T04:30:33,585 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml' 2026-06-07T04:30:33,587 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml' 2026-06-07T04:30:33,590 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml' 2026-06-07T04:30:33,592 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml' 2026-06-07T04:30:33,593 adding 'galaxy/tools/bundled/interactive/interactivetool_metashark.xml' 2026-06-07T04:30:33,595 adding 'galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml' 2026-06-07T04:30:33,597 adding 'galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml' 2026-06-07T04:30:33,598 adding 'galaxy/tools/bundled/interactive/interactivetool_neo4j.xml' 2026-06-07T04:30:33,600 adding 'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml' 2026-06-07T04:30:33,601 adding 'galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml' 2026-06-07T04:30:33,602 adding 'galaxy/tools/bundled/interactive/interactivetool_panoply.xml' 2026-06-07T04:30:33,604 adding 'galaxy/tools/bundled/interactive/interactivetool_paraview.xml' 2026-06-07T04:30:33,605 adding 'galaxy/tools/bundled/interactive/interactivetool_pavian.xml' 2026-06-07T04:30:33,606 adding 'galaxy/tools/bundled/interactive/interactivetool_phinch.xml' 2026-06-07T04:30:33,608 adding 'galaxy/tools/bundled/interactive/interactivetool_pyiron.xml' 2026-06-07T04:30:33,610 adding 'galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml' 2026-06-07T04:30:33,612 adding 'galaxy/tools/bundled/interactive/interactivetool_radiant.xml' 2026-06-07T04:30:33,613 adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml' 2026-06-07T04:30:33,615 adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml' 2026-06-07T04:30:33,616 adding 'galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml' 2026-06-07T04:30:33,618 adding 'galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml' 2026-06-07T04:30:33,619 adding 'galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml' 2026-06-07T04:30:33,620 adding 'galaxy/tools/bundled/interactive/interactivetool_wallace.xml' 2026-06-07T04:30:33,621 adding 'galaxy/tools/bundled/interactive/interactivetool_wilson.xml' 2026-06-07T04:30:33,624 adding 'galaxy/tools/bundled/interactive/simtext_app.R' 2026-06-07T04:30:33,626 adding 'galaxy/tools/bundled/maf/__init__.py' 2026-06-07T04:30:33,628 adding 'galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml' 2026-06-07T04:30:33,629 adding 'galaxy/tools/bundled/maf/interval2maf.py' 2026-06-07T04:30:33,631 adding 'galaxy/tools/bundled/maf/interval2maf.xml' 2026-06-07T04:30:33,632 adding 'galaxy/tools/bundled/maf/interval2maf_pairwise.xml' 2026-06-07T04:30:33,634 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py' 2026-06-07T04:30:33,635 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml' 2026-06-07T04:30:33,636 adding 'galaxy/tools/bundled/maf/macros.xml' 2026-06-07T04:30:33,638 adding 'galaxy/tools/bundled/maf/maf_by_block_number.py' 2026-06-07T04:30:33,639 adding 'galaxy/tools/bundled/maf/maf_by_block_number.xml' 2026-06-07T04:30:33,640 adding 'galaxy/tools/bundled/maf/maf_filter.py' 2026-06-07T04:30:33,642 adding 'galaxy/tools/bundled/maf/maf_filter.xml' 2026-06-07T04:30:33,643 adding 'galaxy/tools/bundled/maf/maf_limit_size.py' 2026-06-07T04:30:33,644 adding 'galaxy/tools/bundled/maf/maf_limit_size.xml' 2026-06-07T04:30:33,646 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py' 2026-06-07T04:30:33,647 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml' 2026-06-07T04:30:33,648 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py' 2026-06-07T04:30:33,649 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml' 2026-06-07T04:30:33,651 adding 'galaxy/tools/bundled/maf/maf_split_by_species.py' 2026-06-07T04:30:33,652 adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml' 2026-06-07T04:30:33,654 adding 'galaxy/tools/bundled/maf/maf_stats.py' 2026-06-07T04:30:33,655 adding 'galaxy/tools/bundled/maf/maf_stats.xml' 2026-06-07T04:30:33,657 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.py' 2026-06-07T04:30:33,658 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.xml' 2026-06-07T04:30:33,659 adding 'galaxy/tools/bundled/maf/maf_to_bed.py' 2026-06-07T04:30:33,661 adding 'galaxy/tools/bundled/maf/maf_to_bed.xml' 2026-06-07T04:30:33,662 adding 'galaxy/tools/bundled/maf/maf_to_bed_code.py' 2026-06-07T04:30:33,664 adding 'galaxy/tools/bundled/maf/maf_to_fasta.xml' 2026-06-07T04:30:33,665 adding 'galaxy/tools/bundled/maf/maf_to_fasta_concat.py' 2026-06-07T04:30:33,667 adding 'galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py' 2026-06-07T04:30:33,668 adding 'galaxy/tools/bundled/maf/maf_to_interval.py' 2026-06-07T04:30:33,670 adding 'galaxy/tools/bundled/maf/maf_to_interval.xml' 2026-06-07T04:30:33,671 adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py' 2026-06-07T04:30:33,673 adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml' 2026-06-07T04:30:33,675 adding 'galaxy/tools/bundled/meme/meme.xml' 2026-06-07T04:30:33,677 adding 'galaxy/tools/bundled/metag_tools/__init__.py' 2026-06-07T04:30:33,679 adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.py' 2026-06-07T04:30:33,680 adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.xml' 2026-06-07T04:30:33,681 adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py' 2026-06-07T04:30:33,683 adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml' 2026-06-07T04:30:33,686 adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.py' 2026-06-07T04:30:33,689 adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml' 2026-06-07T04:30:33,691 adding 'galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl' 2026-06-07T04:30:33,692 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py' 2026-06-07T04:30:33,693 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml' 2026-06-07T04:30:33,695 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py' 2026-06-07T04:30:33,696 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml' 2026-06-07T04:30:33,698 adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.py' 2026-06-07T04:30:33,699 adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml' 2026-06-07T04:30:33,700 adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py' 2026-06-07T04:30:33,702 adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml' 2026-06-07T04:30:33,703 adding 'galaxy/tools/bundled/ngs_simulation/__init__.py' 2026-06-07T04:30:33,705 adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.py' 2026-06-07T04:30:33,707 adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml' 2026-06-07T04:30:33,709 adding 'galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh' 2026-06-07T04:30:33,710 adding 'galaxy/tools/bundled/phenotype_association/__init__.py' 2026-06-07T04:30:33,712 adding 'galaxy/tools/bundled/phenotype_association/beam.xml' 2026-06-07T04:30:33,713 adding 'galaxy/tools/bundled/phenotype_association/gpass.pl' 2026-06-07T04:30:33,714 adding 'galaxy/tools/bundled/phenotype_association/gpass.xml' 2026-06-07T04:30:33,716 adding 'galaxy/tools/bundled/phenotype_association/ldtools.xml' 2026-06-07T04:30:33,717 adding 'galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh' 2026-06-07T04:30:33,718 adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.pl' 2026-06-07T04:30:33,720 adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.xml' 2026-06-07T04:30:33,721 adding 'galaxy/tools/bundled/phenotype_association/linkToGProfile.pl' 2026-06-07T04:30:33,722 adding 'galaxy/tools/bundled/phenotype_association/linkToGProfile.xml' 2026-06-07T04:30:33,724 adding 'galaxy/tools/bundled/phenotype_association/lped_to_geno.pl' 2026-06-07T04:30:33,726 adding 'galaxy/tools/bundled/phenotype_association/lps.xml' 2026-06-07T04:30:33,727 adding 'galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh' 2026-06-07T04:30:33,729 adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.pl' 2026-06-07T04:30:33,730 adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.xml' 2026-06-07T04:30:33,732 adding 'galaxy/tools/bundled/phenotype_association/master2pg.pl' 2026-06-07T04:30:33,733 adding 'galaxy/tools/bundled/phenotype_association/master2pg.xml' 2026-06-07T04:30:33,734 adding 'galaxy/tools/bundled/phenotype_association/mergeSnps.pl' 2026-06-07T04:30:33,736 adding 'galaxy/tools/bundled/phenotype_association/pagetag.py' 2026-06-07T04:30:33,737 adding 'galaxy/tools/bundled/phenotype_association/pass.xml' 2026-06-07T04:30:33,739 adding 'galaxy/tools/bundled/phenotype_association/pass_wrapper.sh' 2026-06-07T04:30:33,740 adding 'galaxy/tools/bundled/phenotype_association/senatag.py' 2026-06-07T04:30:33,742 adding 'galaxy/tools/bundled/phenotype_association/sift.xml' 2026-06-07T04:30:33,744 adding 'galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh' 2026-06-07T04:30:33,746 adding 'galaxy/tools/bundled/plotting/bar_chart.py' 2026-06-07T04:30:33,747 adding 'galaxy/tools/bundled/plotting/bar_chart.xml' 2026-06-07T04:30:33,749 adding 'galaxy/tools/bundled/plotting/boxplot.xml' 2026-06-07T04:30:33,750 adding 'galaxy/tools/bundled/solid_tools/__init__.py' 2026-06-07T04:30:33,752 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py' 2026-06-07T04:30:33,754 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml' 2026-06-07T04:30:33,755 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py' 2026-06-07T04:30:33,756 adding 'galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh' 2026-06-07T04:30:33,758 adding 'galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml' 2026-06-07T04:30:33,759 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.py' 2026-06-07T04:30:33,761 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.xml' 2026-06-07T04:30:33,763 adding 'galaxy/tools/bundled/sr_assembly/__init__.py' 2026-06-07T04:30:33,765 adding 'galaxy/tools/bundled/sr_assembly/velvetg.xml' 2026-06-07T04:30:33,766 adding 'galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py' 2026-06-07T04:30:33,768 adding 'galaxy/tools/bundled/sr_assembly/velveth.xml' 2026-06-07T04:30:33,769 adding 'galaxy/tools/bundled/sr_assembly/velveth_wrapper.py' 2026-06-07T04:30:33,772 adding 'galaxy/tools/bundled/sr_mapping/PerM.xml' 2026-06-07T04:30:33,773 adding 'galaxy/tools/bundled/sr_mapping/__init__.py' 2026-06-07T04:30:33,775 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.py' 2026-06-07T04:30:33,778 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml' 2026-06-07T04:30:33,779 adding 'galaxy/tools/bundled/sr_mapping/fastq_statistics.xml' 2026-06-07T04:30:33,781 adding 'galaxy/tools/bundled/sr_mapping/mosaik.xml' 2026-06-07T04:30:33,783 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.py' 2026-06-07T04:30:33,785 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.xml' 2026-06-07T04:30:33,786 adding 'galaxy/tools/bundled/stats/__init__.py' 2026-06-07T04:30:33,788 adding 'galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml' 2026-06-07T04:30:33,790 adding 'galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py' 2026-06-07T04:30:33,791 adding 'galaxy/tools/bundled/stats/filtering.py' 2026-06-07T04:30:33,793 adding 'galaxy/tools/bundled/stats/filtering.xml' 2026-06-07T04:30:33,794 adding 'galaxy/tools/bundled/stats/filtering_1_1_0.xml' 2026-06-07T04:30:33,796 adding 'galaxy/tools/bundled/stats/grouping.py' 2026-06-07T04:30:33,798 adding 'galaxy/tools/bundled/stats/grouping.xml' 2026-06-07T04:30:33,799 adding 'galaxy/tools/bundled/stats/gsummary.py' 2026-06-07T04:30:33,801 adding 'galaxy/tools/bundled/stats/gsummary.xml' 2026-06-07T04:30:33,802 adding 'galaxy/tools/bundled/stats/r_wrapper.sh' 2026-06-07T04:30:33,804 adding 'galaxy/tools/data/__init__.py' 2026-06-07T04:30:33,806 adding 'galaxy/tools/data_manager/__init__.py' 2026-06-07T04:30:33,808 adding 'galaxy/tools/data_manager/manager.py' 2026-06-07T04:30:33,810 adding 'galaxy/tools/error_reports/__init__.py' 2026-06-07T04:30:33,811 adding 'galaxy/tools/error_reports/plugins/__init__.py' 2026-06-07T04:30:33,813 adding 'galaxy/tools/error_reports/plugins/base_git.py' 2026-06-07T04:30:33,814 adding 'galaxy/tools/error_reports/plugins/email.py' 2026-06-07T04:30:33,816 adding 'galaxy/tools/error_reports/plugins/github.py' 2026-06-07T04:30:33,818 adding 'galaxy/tools/error_reports/plugins/gitlab.py' 2026-06-07T04:30:33,819 adding 'galaxy/tools/error_reports/plugins/influxdb.py' 2026-06-07T04:30:33,820 adding 'galaxy/tools/error_reports/plugins/json.py' 2026-06-07T04:30:33,822 adding 'galaxy/tools/error_reports/plugins/sentry.py' 2026-06-07T04:30:33,823 adding 'galaxy/tools/error_reports/plugins/slack.py' 2026-06-07T04:30:33,825 adding 'galaxy/tools/expressions/__init__.py' 2026-06-07T04:30:33,826 adding 'galaxy/tools/expressions/cwlNodeEngine.js' 2026-06-07T04:30:33,827 adding 'galaxy/tools/expressions/evaluation.py' 2026-06-07T04:30:33,828 adding 'galaxy/tools/expressions/script.py' 2026-06-07T04:30:33,830 adding 'galaxy/tools/expressions/util.py' 2026-06-07T04:30:33,831 adding 'galaxy/tools/fetch/__init__.py' 2026-06-07T04:30:33,834 adding 'galaxy/tools/fetch/workbooks.py' 2026-06-07T04:30:33,835 adding 'galaxy/tools/filters/__init__.py' 2026-06-07T04:30:33,837 adding 'galaxy/tools/imp_exp/__init__.py' 2026-06-07T04:30:33,839 adding 'galaxy/tools/imp_exp/exp_history_to_archive.xml' 2026-06-07T04:30:33,840 adding 'galaxy/tools/imp_exp/exp_history_to_uri.xml' 2026-06-07T04:30:33,841 adding 'galaxy/tools/imp_exp/export_history.py' 2026-06-07T04:30:33,843 adding 'galaxy/tools/imp_exp/imp_history_from_archive.xml' 2026-06-07T04:30:33,844 adding 'galaxy/tools/imp_exp/unpack_tar_gz_archive.py' 2026-06-07T04:30:33,849 adding 'galaxy/tools/parameters/__init__.py' 2026-06-07T04:30:33,862 adding 'galaxy/tools/parameters/basic.py' 2026-06-07T04:30:33,864 adding 'galaxy/tools/parameters/cancelable_request.py' 2026-06-07T04:30:33,866 adding 'galaxy/tools/parameters/dataset_matcher.py' 2026-06-07T04:30:33,872 adding 'galaxy/tools/parameters/dynamic_options.py' 2026-06-07T04:30:33,875 adding 'galaxy/tools/parameters/grouping.py' 2026-06-07T04:30:33,877 adding 'galaxy/tools/parameters/input_translation.py' 2026-06-07T04:30:33,880 adding 'galaxy/tools/parameters/meta.py' 2026-06-07T04:30:33,881 adding 'galaxy/tools/parameters/options.py' 2026-06-07T04:30:33,882 adding 'galaxy/tools/parameters/populate_model.py' 2026-06-07T04:30:33,884 adding 'galaxy/tools/parameters/sanitize.py' 2026-06-07T04:30:33,886 adding 'galaxy/tools/parameters/validation.py' 2026-06-07T04:30:33,887 adding 'galaxy/tools/parameters/workflow_utils.py' 2026-06-07T04:30:33,889 adding 'galaxy/tools/parameters/wrapped.py' 2026-06-07T04:30:33,890 adding 'galaxy/tools/parameters/wrapped_json.py' 2026-06-07T04:30:33,893 adding 'galaxy/tools/search/__init__.py' 2026-06-07T04:30:33,895 adding 'galaxy/tools/util/__init__.py' 2026-06-07T04:30:33,898 adding 'galaxy/tools/util/maf_utilities.py' 2026-06-07T04:30:33,900 adding 'galaxy/tools/util/galaxyops/__init__.py' 2026-06-07T04:30:33,902 adding 'galaxy/visualization/__init__.py' 2026-06-07T04:30:33,904 adding 'galaxy/visualization/genomes.py' 2026-06-07T04:30:33,906 adding 'galaxy/visualization/data_providers/__init__.py' 2026-06-07T04:30:33,907 adding 'galaxy/visualization/data_providers/basic.py' 2026-06-07T04:30:33,909 adding 'galaxy/visualization/data_providers/cigar.py' 2026-06-07T04:30:33,915 adding 'galaxy/visualization/data_providers/genome.py' 2026-06-07T04:30:33,917 adding 'galaxy/visualization/data_providers/registry.py' 2026-06-07T04:30:33,919 adding 'galaxy/visualization/data_providers/phyloviz/__init__.py' 2026-06-07T04:30:33,920 adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py' 2026-06-07T04:30:33,922 adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py' 2026-06-07T04:30:33,924 adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py' 2026-06-07T04:30:33,925 adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py' 2026-06-07T04:30:33,927 adding 'galaxy/visualization/plugins/__init__.py' 2026-06-07T04:30:33,929 adding 'galaxy/visualization/plugins/config_parser.py' 2026-06-07T04:30:33,930 adding 'galaxy/visualization/plugins/datasource_testing.py' 2026-06-07T04:30:33,931 adding 'galaxy/visualization/plugins/plugin.py' 2026-06-07T04:30:33,933 adding 'galaxy/visualization/plugins/registry.py' 2026-06-07T04:30:33,935 adding 'galaxy/visualization/plugins/resource_parser.py' 2026-06-07T04:30:33,937 adding 'galaxy/webhooks/__init__.py' 2026-06-07T04:30:33,939 adding 'galaxy/work/__init__.py' 2026-06-07T04:30:33,940 adding 'galaxy/work/context.py' 2026-06-07T04:30:33,942 adding 'galaxy/workflow/__init__.py' 2026-06-07T04:30:33,943 adding 'galaxy/workflow/completion_monitor.py' 2026-06-07T04:30:33,945 adding 'galaxy/workflow/errors.py' 2026-06-07T04:30:33,948 adding 'galaxy/workflow/extract.py' 2026-06-07T04:30:33,963 adding 'galaxy/workflow/modules.py' 2026-06-07T04:30:33,965 adding 'galaxy/workflow/render.py' 2026-06-07T04:30:33,970 adding 'galaxy/workflow/run.py' 2026-06-07T04:30:33,974 adding 'galaxy/workflow/run_request.py' 2026-06-07T04:30:33,977 adding 'galaxy/workflow/scheduling_manager.py' 2026-06-07T04:30:33,978 adding 'galaxy/workflow/steps.py' 2026-06-07T04:30:33,980 adding 'galaxy/workflow/trs_proxy.py' 2026-06-07T04:30:33,981 adding 'galaxy/workflow/workflow_parameter_input_definitions.py' 2026-06-07T04:30:33,984 adding 'galaxy/workflow/completion_hooks/__init__.py' 2026-06-07T04:30:33,985 adding 'galaxy/workflow/completion_hooks/base.py' 2026-06-07T04:30:33,986 adding 'galaxy/workflow/completion_hooks/export.py' 2026-06-07T04:30:33,988 adding 'galaxy/workflow/completion_hooks/notification.py' 2026-06-07T04:30:33,993 adding 'galaxy/workflow/refactor/__init__.py' 2026-06-07T04:30:33,997 adding 'galaxy/workflow/refactor/execute.py' 2026-06-07T04:30:33,999 adding 'galaxy/workflow/refactor/schema.py' 2026-06-07T04:30:34,000 adding 'galaxy/workflow/reports/__init__.py' 2026-06-07T04:30:34,002 adding 'galaxy/workflow/reports/generators/__init__.py' 2026-06-07T04:30:34,003 adding 'galaxy/workflow/reports/generators/markdown.py' 2026-06-07T04:30:34,005 adding 'galaxy/workflow/resources/__init__.py' 2026-06-07T04:30:34,006 adding 'galaxy/workflow/resources/example.py.sample' 2026-06-07T04:30:34,008 adding 'galaxy/workflow/schedulers/__init__.py' 2026-06-07T04:30:34,009 adding 'galaxy/workflow/schedulers/core.py' 2026-06-07T04:30:34,012 adding 'galaxy_app-26.0.1.dist-info/licenses/LICENSE' 2026-06-07T04:30:34,013 adding 'galaxy_ext/__init__.py' 2026-06-07T04:30:34,014 adding 'galaxy_ext/py.typed' 2026-06-07T04:30:34,016 adding 'galaxy_ext/container_monitor/__init__.py' 2026-06-07T04:30:34,017 adding 'galaxy_ext/container_monitor/monitor.py' 2026-06-07T04:30:34,018 adding 'galaxy_ext/expressions/__init__.py' 2026-06-07T04:30:34,020 adding 'galaxy_ext/expressions/handle_job.py' 2026-06-07T04:30:34,021 adding 'galaxy_ext/metadata/__init__.py' 2026-06-07T04:30:34,022 adding 'galaxy_ext/metadata/set_metadata.py' 2026-06-07T04:30:34,024 adding 'tool_shed_client/__init__.py' 2026-06-07T04:30:34,025 adding 'tool_shed_client/py.typed' 2026-06-07T04:30:34,026 adding 'tool_shed_client/trs_util.py' 2026-06-07T04:30:34,029 adding 'tool_shed_client/schema/__init__.py' 2026-06-07T04:30:34,031 adding 'tool_shed_client/schema/trs.py' 2026-06-07T04:30:34,032 adding 'tool_shed_client/schema/trs_service_info.py' 2026-06-07T04:30:34,048 adding 'galaxy_app-26.0.1.dist-info/METADATA' 2026-06-07T04:30:34,050 adding 'galaxy_app-26.0.1.dist-info/WHEEL' 2026-06-07T04:30:34,051 adding 'galaxy_app-26.0.1.dist-info/entry_points.txt' 2026-06-07T04:30:34,052 adding 'galaxy_app-26.0.1.dist-info/top_level.txt' 2026-06-07T04:30:34,063 adding 'galaxy_app-26.0.1.dist-info/RECORD' 2026-06-07T04:30:34,090 removing build/bdist.linux-armv7l/wheel 2026-06-07T04:30:34,339 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2026-06-07T04:30:34,383 Created wheel for galaxy-app: filename=galaxy_app-26.0.1-py3-none-any.whl size=1672799 sha256=2257a3dd9dbf653df52e23dce1fd834bb94b3cd1028b5ef61af0171964fd2a86 2026-06-07T04:30:34,384 Stored in directory: /tmp/pip-ephem-wheel-cache-jshqm4ac/wheels/af/c4/37/87a78c31efb52de6d594d4a016d8189a28f41b7e41b874654f 2026-06-07T04:30:34,451 Successfully built galaxy-app 2026-06-07T04:30:34,507 Removed build tracker: '/tmp/pip-build-tracker-ugpovj_0'