2026-06-08T08:00:23,081 Created temporary directory: /tmp/pip-ephem-wheel-cache-xf0yoyr4 2026-06-08T08:00:23,083 Created temporary directory: /tmp/pip-build-tracker-wmtrdip1 2026-06-08T08:00:23,084 Initialized build tracking at /tmp/pip-build-tracker-wmtrdip1 2026-06-08T08:00:23,084 Created build tracker: /tmp/pip-build-tracker-wmtrdip1 2026-06-08T08:00:23,084 Entered build tracker: /tmp/pip-build-tracker-wmtrdip1 2026-06-08T08:00:23,085 Created temporary directory: /tmp/pip-wheel-6suzojv3 2026-06-08T08:00:23,088 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-08T08:00:23,091 Created temporary directory: /tmp/pip-ephem-wheel-cache-qwxznemu 2026-06-08T08:00:23,112 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-08T08:00:23,116 2 location(s) to search for versions of structuretoolkit: 2026-06-08T08:00:23,116 * https://pypi.org/simple/structuretoolkit/ 2026-06-08T08:00:23,116 * https://www.piwheels.org/simple/structuretoolkit/ 2026-06-08T08:00:23,116 Fetching project page and analyzing links: https://pypi.org/simple/structuretoolkit/ 2026-06-08T08:00:23,117 Getting page https://pypi.org/simple/structuretoolkit/ 2026-06-08T08:00:23,119 Found index url https://pypi.org/simple 2026-06-08T08:00:23,343 Fetched page https://pypi.org/simple/structuretoolkit/ as application/vnd.pypi.simple.v1+json 2026-06-08T08:00:23,360 Skipping link: No binaries permitted for structuretoolkit: 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2026-06-08T08:00:23,372 Found link https://files.pythonhosted.org/packages/5c/7e/29a4c8b042661594399d52409f0c5e00a51e8cc59982472b0427b5b7767a/structuretoolkit-0.0.10.tar.gz (from https://pypi.org/simple/structuretoolkit/), version: 0.0.10 2026-06-08T08:00:23,372 Skipping link: No binaries permitted for structuretoolkit: https://files.pythonhosted.org/packages/b2/da/7a1de4d3f9254899f07c931292b97e99db2820ec93e89b6972382ff25c97/structuretoolkit-0.0.11-py3-none-any.whl (from https://pypi.org/simple/structuretoolkit/) 2026-06-08T08:00:23,373 Found link https://files.pythonhosted.org/packages/d0/98/d68e1ae6ab54ca2b27e8e84ec5183453943b83c48689131a770f65d5dd95/structuretoolkit-0.0.11.tar.gz (from https://pypi.org/simple/structuretoolkit/), version: 0.0.11 2026-06-08T08:00:23,374 Skipping link: No binaries permitted for structuretoolkit: https://files.pythonhosted.org/packages/a1/15/16581aee326755b3253869f1ad8a9f5e0e49c9e238d37fc853cc69d1203e/structuretoolkit-0.0.12-py3-none-any.whl (from 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https://www.piwheels.org/simple/structuretoolkit/) (requires-python:>=3.8) 2026-06-08T08:00:23,629 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.16-py3-none-any.whl#sha256=7d495264af8808852fe44463819a02d39e6f84b41e5a31a5cee55a47732c7f18 (from https://www.piwheels.org/simple/structuretoolkit/) (requires-python:>=3.8) 2026-06-08T08:00:23,630 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.15-py3-none-any.whl#sha256=ae8e3ea53fb3470fa8a92f764fd9426723abd066da693088eb9e9a00e2195738 (from https://www.piwheels.org/simple/structuretoolkit/) (requires-python:>=3.8) 2026-06-08T08:00:23,630 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.14-py3-none-any.whl#sha256=67baa71850940e7e2e1c2a625abd039da0b71919215d10fddf7a65eba7c51a6d (from https://www.piwheels.org/simple/structuretoolkit/) (requires-python:>=3.8) 2026-06-08T08:00:23,631 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.12-py3-none-any.whl#sha256=7051f2cb1ab70fb4cf49152408782ccfc2a94d2ad4a78002a4f44978a3550012 (from https://www.piwheels.org/simple/structuretoolkit/) 2026-06-08T08:00:23,632 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.11-py3-none-any.whl#sha256=938aede8aec68ca8162e67a98ca2c329d833dc266c479755b1a616838a97641b (from https://www.piwheels.org/simple/structuretoolkit/) 2026-06-08T08:00:23,632 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.10-py3-none-any.whl#sha256=cb834089e69339c407a3fa8c6a494f7200a536a5f7b9b468ab2f77e5d5e11a35 (from https://www.piwheels.org/simple/structuretoolkit/) 2026-06-08T08:00:23,633 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.9-py3-none-any.whl#sha256=891db770344ca96aeefcda67008adb8c2d8346598f90a5594a0392effc28ffb2 (from https://www.piwheels.org/simple/structuretoolkit/) 2026-06-08T08:00:23,633 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.8-py3-none-any.whl#sha256=df4b955d54f9b231afee57396e29d4fa3d4e94f28a6cf7ffa1b58603d5403fca (from https://www.piwheels.org/simple/structuretoolkit/) 2026-06-08T08:00:23,633 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.7-py3-none-any.whl#sha256=00f6c1982890e64ec97e14c54db8be5fe5ed9e03009f67b1595237763fcd75ab (from https://www.piwheels.org/simple/structuretoolkit/) 2026-06-08T08:00:23,634 Skipping link: No binaries permitted for structuretoolkit: 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https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.3-py3-none-any.whl#sha256=acda4207c3d9330738b7a3f66c23b37a982e7b0bf887df3830b9ef27c94fc94a (from https://www.piwheels.org/simple/structuretoolkit/) 2026-06-08T08:00:23,636 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.2-py3-none-any.whl#sha256=8bed348ea47733364b22160689312f359a58bf93a864ac126af613e1ce451c0f (from https://www.piwheels.org/simple/structuretoolkit/) 2026-06-08T08:00:23,637 Skipping link: No binaries permitted for structuretoolkit: https://archive1.piwheels.org/simple/structuretoolkit/structuretoolkit-0.0.1-py3-none-any.whl#sha256=dc3e888d7360e8dc6f0ed1738128748745572aa0545919517b5547fd516febf6 (from https://www.piwheels.org/simple/structuretoolkit/) 2026-06-08T08:00:23,638 Skipping link: not a file: https://www.piwheels.org/simple/structuretoolkit/ 2026-06-08T08:00:23,638 Skipping link: not a file: https://pypi.org/simple/structuretoolkit/ 2026-06-08T08:00:23,662 Given no hashes to check 1 links for project 'structuretoolkit': discarding no candidates 2026-06-08T08:00:23,680 Collecting structuretoolkit==0.0.44 2026-06-08T08:00:23,682 Created temporary directory: /tmp/pip-unpack-q_b1doc5 2026-06-08T08:00:23,903 Downloading structuretoolkit-0.0.44.tar.gz (67 kB) 2026-06-08T08:00:24,031 Added structuretoolkit==0.0.44 from https://files.pythonhosted.org/packages/36/da/53e67786a4469a253dd77247af89c091e62d4473ba96067a95d7f14e7e38/structuretoolkit-0.0.44.tar.gz to build tracker '/tmp/pip-build-tracker-wmtrdip1' 2026-06-08T08:00:24,041 Created temporary directory: /tmp/pip-build-env-rd7_vhua 2026-06-08T08:00:24,045 Installing build dependencies: started 2026-06-08T08:00:24,046 Running command pip subprocess to install build dependencies 2026-06-08T08:00:25,185 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-08T08:00:25,670 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-08T08:00:25,692 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-08T08:00:26,215 Collecting ase 2026-06-08T08:00:26,216 Obtaining dependency information for ase from https://www.piwheels.org/simple/ase/ase-3.28.0-py3-none-any.whl.metadata 2026-06-08T08:00:26,228 Downloading https://www.piwheels.org/simple/ase/ase-3.28.0-py3-none-any.whl.metadata (4.3 kB) 2026-06-08T08:00:27,311 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-06-08T08:00:27,318 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-06-08T08:00:27,325 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-06-08T08:00:27,332 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-06-08T08:00:27,339 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-06-08T08:00:27,784 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/d3/e1/f2fe8f6113a657a1da83b358b16755e528a602c6976a43724a88f42b482a/numpy-2.5.0rc1.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-06-08T08:00:28,100 Collecting numpy 2026-06-08T08:00:28,101 Obtaining dependency information for numpy from https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata 2026-06-08T08:00:28,116 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata (6.6 kB) 2026-06-08T08:00:28,760 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/99/f1/c00d6be56e1a718a3068079e3ec8ce044d7179345280f6a3f5066068af0d/scipy-1.6.2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2026-06-08T08:00:28,765 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): 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(from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2026-06-08T08:00:29,105 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/1c/b9/101efd4a4302db579178ebb664ca6922d547646352f831bd39cbb7d0294b/scipy-1.18.0rc1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.12) 2026-06-08T08:00:29,303 Collecting scipy 2026-06-08T08:00:29,305 Obtaining dependency information for scipy from https://www.piwheels.org/simple/scipy/scipy-1.17.1-cp311-cp311-linux_armv7l.whl.metadata 2026-06-08T08:00:29,315 Downloading https://www.piwheels.org/simple/scipy/scipy-1.17.1-cp311-cp311-linux_armv7l.whl.metadata (8.7 kB) 2026-06-08T08:00:29,536 Collecting hatchling==1.30.1 2026-06-08T08:00:29,537 Obtaining dependency information for hatchling==1.30.1 from https://www.piwheels.org/simple/hatchling/hatchling-1.30.1-py3-none-any.whl.metadata 2026-06-08T08:00:29,551 Using cached 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2026-06-08T08:00:30,832 Obtaining dependency information for setuptools-scm>=8.2.0 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata 2026-06-08T08:00:30,846 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl.metadata (6.5 kB) 2026-06-08T08:00:32,276 Collecting matplotlib>=3.5.2 2026-06-08T08:00:32,277 Obtaining dependency information for matplotlib>=3.5.2 from https://www.piwheels.org/simple/matplotlib/matplotlib-3.10.9-cp311-cp311-linux_armv7l.whl.metadata 2026-06-08T08:00:32,289 Downloading https://www.piwheels.org/simple/matplotlib/matplotlib-3.10.9-cp311-cp311-linux_armv7l.whl.metadata (11 kB) 2026-06-08T08:00:33,066 Collecting contourpy>=1.0.1 2026-06-08T08:00:33,067 Obtaining dependency information for contourpy>=1.0.1 from https://www.piwheels.org/simple/contourpy/contourpy-1.2.1-cp311-cp311-linux_armv7l.whl.metadata 2026-06-08T08:00:33,080 Downloading https://www.piwheels.org/simple/contourpy/contourpy-1.2.1-cp311-cp311-linux_armv7l.whl.metadata (5.8 kB) 2026-06-08T08:00:33,157 Collecting cycler>=0.10 2026-06-08T08:00:33,159 Obtaining dependency information for cycler>=0.10 from https://www.piwheels.org/simple/cycler/cycler-0.12.1-py3-none-any.whl.metadata 2026-06-08T08:00:33,168 Downloading https://www.piwheels.org/simple/cycler/cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) 2026-06-08T08:00:34,794 Collecting fonttools>=4.22.0 2026-06-08T08:00:34,795 Obtaining dependency information for fonttools>=4.22.0 from https://www.piwheels.org/simple/fonttools/fonttools-4.63.0-py3-none-any.whl.metadata 2026-06-08T08:00:34,808 Downloading https://www.piwheels.org/simple/fonttools/fonttools-4.63.0-py3-none-any.whl.metadata (118 kB) 2026-06-08T08:00:34,830 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.7/118.7 kB 8.6 MB/s eta 0:00:00 2026-06-08T08:00:35,425 Collecting kiwisolver>=1.3.1 2026-06-08T08:00:35,426 Obtaining dependency information for 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Using cached https://www.piwheels.org/simple/pillow/pillow-12.2.0-cp311-cp311-linux_armv7l.whl (1.3 MB) 2026-06-08T08:00:49,795 Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.3.2-py3-none-any.whl (122 kB) 2026-06-08T08:00:49,825 Using cached https://www.piwheels.org/simple/python-dateutil/python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 2026-06-08T08:00:49,855 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-06-08T08:00:49,877 Using cached https://www.piwheels.org/simple/six/six-1.17.0-py2.py3-none-any.whl (11 kB) 2026-06-08T08:00:49,976 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-08T08:00:53,343 Installing collected packages: trove-classifiers, six, setuptools, pyparsing, pluggy, pillow, pathspec, packaging, numpy, kiwisolver, fonttools, cycler, vcs-versioning, scipy, python-dateutil, hatchling, contourpy, setuptools-scm, matplotlib, hatch-vcs, ase 2026-06-08T08:00:53,377 Creating /tmp/pip-build-env-rd7_vhua/overlay/local/bin 2026-06-08T08:00:53,379 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/trove-classifiers to 755 2026-06-08T08:01:07,379 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/f2py to 755 2026-06-08T08:01:07,382 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/numpy-config to 755 2026-06-08T08:01:11,196 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/fonttools to 755 2026-06-08T08:01:11,198 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/pyftmerge to 755 2026-06-08T08:01:11,200 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/pyftsubset to 755 2026-06-08T08:01:11,202 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/ttx to 755 2026-06-08T08:01:11,537 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/vcs-versioning to 755 2026-06-08T08:01:30,403 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/hatchling to 755 2026-06-08T08:01:30,677 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/setuptools-scm to 755 2026-06-08T08:01:46,511 changing mode of /tmp/pip-build-env-rd7_vhua/overlay/local/bin/ase to 755 2026-06-08T08:01:46,955 Successfully installed ase-3.28.0 contourpy-1.2.1 cycler-0.12.1 fonttools-4.63.0 hatch-vcs-0.5.0 hatchling-1.30.1 kiwisolver-1.4.9 matplotlib-3.10.9 numpy-2.4.6 packaging-26.2 pathspec-1.1.1 pillow-12.2.0 pluggy-1.6.0 pyparsing-3.3.2 python-dateutil-2.9.0.post0 scipy-1.17.1 setuptools-82.0.1 setuptools-scm-10.0.5 six-1.17.0 trove-classifiers-2026.6.1.19 vcs-versioning-1.1.1 2026-06-08T08:01:47,822 Installing build dependencies: finished with status 'done' 2026-06-08T08:01:47,829 Getting requirements to build wheel: started 2026-06-08T08:01:47,831 Running command Getting requirements to build wheel 2026-06-08T08:01:48,349 Getting requirements to build wheel: finished with status 'done' 2026-06-08T08:01:48,352 Created temporary directory: /tmp/pip-modern-metadata-sx0ua89k 2026-06-08T08:01:48,355 Preparing metadata (pyproject.toml): started 2026-06-08T08:01:48,356 Running command Preparing metadata (pyproject.toml) 2026-06-08T08:01:49,095 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-08T08:01:49,100 Source in /tmp/pip-wheel-6suzojv3/structuretoolkit_884a93c9e6f445f6850c5c29e8bc2267 has version 0.0.44, which satisfies requirement structuretoolkit==0.0.44 from https://files.pythonhosted.org/packages/36/da/53e67786a4469a253dd77247af89c091e62d4473ba96067a95d7f14e7e38/structuretoolkit-0.0.44.tar.gz 2026-06-08T08:01:49,101 Removed structuretoolkit==0.0.44 from https://files.pythonhosted.org/packages/36/da/53e67786a4469a253dd77247af89c091e62d4473ba96067a95d7f14e7e38/structuretoolkit-0.0.44.tar.gz from build tracker '/tmp/pip-build-tracker-wmtrdip1' 2026-06-08T08:01:49,109 Created temporary directory: /tmp/pip-unpack-uucw_4x7 2026-06-08T08:01:49,109 Building wheels for collected packages: structuretoolkit 2026-06-08T08:01:49,114 Created temporary directory: /tmp/pip-wheel-9aiecn7j 2026-06-08T08:01:49,114 Destination directory: /tmp/pip-wheel-9aiecn7j 2026-06-08T08:01:49,116 Building wheel for structuretoolkit (pyproject.toml): started 2026-06-08T08:01:49,117 Running command Building wheel for structuretoolkit (pyproject.toml) 2026-06-08T08:01:49,249 Building wheel for structuretoolkit (pyproject.toml): finished with status 'done' 2026-06-08T08:01:49,254 Created wheel for structuretoolkit: filename=structuretoolkit-0.0.44-py3-none-any.whl size=78255 sha256=d0d3bcec9a1799678b1ab19642b835b2cae4ace69f48d148986b297c64df3128 2026-06-08T08:01:49,255 Stored in directory: /tmp/pip-ephem-wheel-cache-qwxznemu/wheels/26/0b/c1/4175043e41f9c9e21b22017cbbaafd3445ff9936522bf02332 2026-06-08T08:01:49,268 Successfully built structuretoolkit 2026-06-08T08:01:49,273 Removed build tracker: '/tmp/pip-build-tracker-wmtrdip1'