2026-06-12T20:49:26,788 Created temporary directory: /tmp/pip-ephem-wheel-cache-rsvzyiyr 2026-06-12T20:49:26,790 Created temporary directory: /tmp/pip-build-tracker-6pq8j0j8 2026-06-12T20:49:26,791 Initialized build tracking at /tmp/pip-build-tracker-6pq8j0j8 2026-06-12T20:49:26,791 Created build tracker: /tmp/pip-build-tracker-6pq8j0j8 2026-06-12T20:49:26,791 Entered build tracker: /tmp/pip-build-tracker-6pq8j0j8 2026-06-12T20:49:26,792 Created temporary directory: /tmp/pip-wheel-u3vj4u8z 2026-06-12T20:49:26,795 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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omicverse-2.2.2.tar.gz (13.9 MB) 2026-06-12T20:49:35,215 Added omicverse==2.2.2 from https://files.pythonhosted.org/packages/22/fd/a369acc02aaf395332376f26edd12f576540c85d0b574fd5e68771df415d/omicverse-2.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-6pq8j0j8' 2026-06-12T20:49:35,225 Created temporary directory: /tmp/pip-build-env-2iiv83gr 2026-06-12T20:49:35,229 Installing build dependencies: started 2026-06-12T20:49:35,230 Running command pip subprocess to install build dependencies 2026-06-12T20:49:36,372 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-12T20:49:36,836 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-12T20:49:36,860 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-12T20:49:38,881 Collecting setuptools>=61 2026-06-12T20:49:38,882 Obtaining dependency information for setuptools>=61 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-12T20:49:38,901 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-12T20:49:39,137 Collecting wheel 2026-06-12T20:49:39,138 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-06-12T20:49:39,157 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-06-12T20:49:41,224 Collecting Cython 2026-06-12T20:49:41,226 Obtaining dependency information for Cython from https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl.metadata 2026-06-12T20:49:41,244 Using cached https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl.metadata (7.1 kB) 2026-06-12T20:49:41,432 Collecting packaging>=24.0 2026-06-12T20:49:41,434 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-06-12T20:49:41,448 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-06-12T20:49:41,703 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-12T20:49:42,504 Using cached https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl (11.2 MB) 2026-06-12T20:49:42,762 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-12T20:49:42,840 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-12T20:49:42,873 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-12T20:49:43,719 Using cached https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl (11.2 MB) 2026-06-12T20:49:44,062 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-12T20:49:44,144 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-12T20:49:46,840 Installing collected packages: setuptools, packaging, Cython, wheel 2026-06-12T20:49:53,908 Creating /tmp/pip-build-env-2iiv83gr/overlay/local/bin 2026-06-12T20:49:53,910 changing mode of /tmp/pip-build-env-2iiv83gr/overlay/local/bin/cygdb to 755 2026-06-12T20:49:53,912 changing mode of /tmp/pip-build-env-2iiv83gr/overlay/local/bin/cython to 755 2026-06-12T20:49:53,914 changing mode of /tmp/pip-build-env-2iiv83gr/overlay/local/bin/cythonize to 755 2026-06-12T20:49:54,048 changing mode of /tmp/pip-build-env-2iiv83gr/overlay/local/bin/wheel to 755 2026-06-12T20:49:54,076 Successfully installed Cython-3.2.5 packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-06-12T20:49:54,463 Installing build dependencies: finished with status 'done' 2026-06-12T20:49:54,469 Getting requirements to build wheel: started 2026-06-12T20:49:54,470 Running command Getting requirements to build wheel 2026-06-12T20:49:55,242 /tmp/pip-build-env-2iiv83gr/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-12T20:49:55,242 !! 2026-06-12T20:49:55,243 ******************************************************************************** 2026-06-12T20:49:55,244 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-12T20:49:55,245 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-12T20:49:55,246 or your builds will no longer be supported. 2026-06-12T20:49:55,247 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-12T20:49:55,247 ******************************************************************************** 2026-06-12T20:49:55,248 !! 2026-06-12T20:49:55,249 corresp(dist, value, root_dir) 2026-06-12T20:49:55,542 running egg_info 2026-06-12T20:49:55,548 writing omicverse.egg-info/PKG-INFO 2026-06-12T20:49:55,584 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-06-12T20:49:55,586 writing entry points to omicverse.egg-info/entry_points.txt 2026-06-12T20:49:55,606 writing requirements to omicverse.egg-info/requires.txt 2026-06-12T20:49:55,608 writing top-level names to omicverse.egg-info/top_level.txt 2026-06-12T20:49:55,903 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-12T20:49:55,984 reading manifest template 'MANIFEST.in' 2026-06-12T20:49:57,141 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-06-12T20:49:58,858 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-06-12T20:49:59,429 warning: no files found matching '*.yml' under directory 'omicverse' 2026-06-12T20:50:04,706 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-06-12T20:50:05,364 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-06-12T20:50:06,056 warning: no files found matching '*.svg' under directory 'omicverse' 2026-06-12T20:50:06,646 warning: no files found matching '*.ico' under directory 'omicverse' 2026-06-12T20:50:07,223 warning: no files found matching '*.db' under directory 'omicverse' 2026-06-12T20:50:07,829 warning: no files found matching '*.npz' under directory 'omicverse' 2026-06-12T20:50:08,392 warning: no files found matching '*.gz' under directory 'omicverse' 2026-06-12T20:50:08,397 no previously-included directories found matching '.git' 2026-06-12T20:50:08,401 no previously-included directories found matching '.github' 2026-06-12T20:50:08,404 no previously-included directories found matching '.claude' 2026-06-12T20:50:08,408 no previously-included directories found matching '.pytest_cache' 2026-06-12T20:50:08,412 no previously-included directories found matching '.ruff_cache' 2026-06-12T20:50:08,416 no previously-included directories found matching '.vscode' 2026-06-12T20:50:08,420 no previously-included directories found matching 'docs' 2026-06-12T20:50:08,424 no previously-included directories found matching 'tests' 2026-06-12T20:50:08,428 no previously-included directories found matching 'OvIntelligence' 2026-06-12T20:50:08,431 no previously-included directories found matching 'READMEM' 2026-06-12T20:50:08,436 no previously-included directories found matching 'omicverse_guide' 2026-06-12T20:50:08,440 no previously-included directories found matching 'omicverse_web' 2026-06-12T20:50:08,444 no previously-included directories found matching 'tmp' 2026-06-12T20:50:08,448 no previously-included directories found matching 'tmp_omicverse' 2026-06-12T20:50:08,452 no previously-included directories found matching 'Skill_Seekers' 2026-06-12T20:50:08,459 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-06-12T20:50:08,469 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-06-12T20:50:08,477 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-06-12T20:50:08,478 adding license file 'LICENSE' 2026-06-12T20:50:08,575 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-12T20:50:08,690 Getting requirements to build wheel: finished with status 'done' 2026-06-12T20:50:08,694 Created temporary directory: /tmp/pip-modern-metadata-q5fiqxpy 2026-06-12T20:50:08,697 Preparing metadata (pyproject.toml): started 2026-06-12T20:50:08,698 Running command Preparing metadata (pyproject.toml) 2026-06-12T20:50:09,366 /tmp/pip-build-env-2iiv83gr/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-12T20:50:09,366 !! 2026-06-12T20:50:09,367 ******************************************************************************** 2026-06-12T20:50:09,368 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-12T20:50:09,369 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-12T20:50:09,370 or your builds will no longer be supported. 2026-06-12T20:50:09,371 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-12T20:50:09,372 ******************************************************************************** 2026-06-12T20:50:09,373 !! 2026-06-12T20:50:09,373 corresp(dist, value, root_dir) 2026-06-12T20:50:09,672 running dist_info 2026-06-12T20:50:09,684 creating /tmp/pip-modern-metadata-q5fiqxpy/omicverse.egg-info 2026-06-12T20:50:09,685 writing /tmp/pip-modern-metadata-q5fiqxpy/omicverse.egg-info/PKG-INFO 2026-06-12T20:50:09,721 writing dependency_links to /tmp/pip-modern-metadata-q5fiqxpy/omicverse.egg-info/dependency_links.txt 2026-06-12T20:50:09,723 writing entry points to /tmp/pip-modern-metadata-q5fiqxpy/omicverse.egg-info/entry_points.txt 2026-06-12T20:50:09,743 writing requirements to /tmp/pip-modern-metadata-q5fiqxpy/omicverse.egg-info/requires.txt 2026-06-12T20:50:09,744 writing top-level names to /tmp/pip-modern-metadata-q5fiqxpy/omicverse.egg-info/top_level.txt 2026-06-12T20:50:09,746 writing manifest file '/tmp/pip-modern-metadata-q5fiqxpy/omicverse.egg-info/SOURCES.txt' 2026-06-12T20:50:10,003 reading manifest file '/tmp/pip-modern-metadata-q5fiqxpy/omicverse.egg-info/SOURCES.txt' 2026-06-12T20:50:10,005 reading manifest template 'MANIFEST.in' 2026-06-12T20:50:11,487 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-06-12T20:50:13,525 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-06-12T20:50:14,102 warning: no files found matching '*.yml' under directory 'omicverse' 2026-06-12T20:50:19,299 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-06-12T20:50:19,838 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-06-12T20:50:20,410 warning: no files found matching '*.svg' under directory 'omicverse' 2026-06-12T20:50:21,004 warning: no files found matching '*.ico' under directory 'omicverse' 2026-06-12T20:50:21,804 warning: no files found matching '*.db' under directory 'omicverse' 2026-06-12T20:50:22,400 warning: no files found matching '*.npz' under directory 'omicverse' 2026-06-12T20:50:22,987 warning: no files found matching '*.gz' under directory 'omicverse' 2026-06-12T20:50:22,989 no previously-included directories found matching '.git' 2026-06-12T20:50:22,992 no previously-included directories found matching '.github' 2026-06-12T20:50:22,995 no previously-included directories found matching '.claude' 2026-06-12T20:50:22,998 no previously-included directories found matching '.pytest_cache' 2026-06-12T20:50:23,000 no previously-included directories found matching '.ruff_cache' 2026-06-12T20:50:23,003 no previously-included directories found matching '.vscode' 2026-06-12T20:50:23,006 no previously-included directories found matching 'docs' 2026-06-12T20:50:23,008 no previously-included directories found matching 'tests' 2026-06-12T20:50:23,011 no previously-included directories found matching 'OvIntelligence' 2026-06-12T20:50:23,014 no previously-included directories found matching 'READMEM' 2026-06-12T20:50:23,017 no previously-included directories found matching 'omicverse_guide' 2026-06-12T20:50:23,020 no previously-included directories found matching 'omicverse_web' 2026-06-12T20:50:23,022 no previously-included directories found matching 'tmp' 2026-06-12T20:50:23,025 no previously-included directories found matching 'tmp_omicverse' 2026-06-12T20:50:23,028 no previously-included directories found matching 'Skill_Seekers' 2026-06-12T20:50:23,033 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-06-12T20:50:23,040 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-06-12T20:50:23,045 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-06-12T20:50:23,046 adding license file 'LICENSE' 2026-06-12T20:50:23,119 writing manifest file '/tmp/pip-modern-metadata-q5fiqxpy/omicverse.egg-info/SOURCES.txt' 2026-06-12T20:50:23,122 creating '/tmp/pip-modern-metadata-q5fiqxpy/omicverse-2.2.2.dist-info' 2026-06-12T20:50:23,272 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-12T20:50:23,287 Source in /tmp/pip-wheel-u3vj4u8z/omicverse_cc660c24d1ba408c9cd7e8912e203e5a has version 2.2.2, which satisfies requirement omicverse==2.2.2 from https://files.pythonhosted.org/packages/22/fd/a369acc02aaf395332376f26edd12f576540c85d0b574fd5e68771df415d/omicverse-2.2.2.tar.gz 2026-06-12T20:50:23,288 Removed omicverse==2.2.2 from https://files.pythonhosted.org/packages/22/fd/a369acc02aaf395332376f26edd12f576540c85d0b574fd5e68771df415d/omicverse-2.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-6pq8j0j8' 2026-06-12T20:50:23,315 Created temporary directory: /tmp/pip-unpack-kd3fqf4v 2026-06-12T20:50:23,316 Building wheels for collected packages: omicverse 2026-06-12T20:50:23,321 Created temporary directory: /tmp/pip-wheel-soqv7f4t 2026-06-12T20:50:23,322 Destination directory: /tmp/pip-wheel-soqv7f4t 2026-06-12T20:50:23,324 Building wheel for omicverse (pyproject.toml): started 2026-06-12T20:50:23,325 Running command Building wheel for omicverse (pyproject.toml) 2026-06-12T20:50:23,984 /tmp/pip-build-env-2iiv83gr/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-12T20:50:23,984 !! 2026-06-12T20:50:23,985 ******************************************************************************** 2026-06-12T20:50:23,986 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-12T20:50:23,987 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-12T20:50:23,987 or your builds will no longer be supported. 2026-06-12T20:50:23,988 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-12T20:50:23,988 ******************************************************************************** 2026-06-12T20:50:23,989 !! 2026-06-12T20:50:23,990 corresp(dist, value, root_dir) 2026-06-12T20:50:24,268 running bdist_wheel 2026-06-12T20:50:24,288 running build 2026-06-12T20:50:24,289 running build_py 2026-06-12T20:50:24,295 creating build/lib/omicverse 2026-06-12T20:50:24,297 copying omicverse/_registry.py -> build/lib/omicverse 2026-06-12T20:50:24,301 copying omicverse/claw.py -> build/lib/omicverse 2026-06-12T20:50:24,303 copying omicverse/_optional.py -> build/lib/omicverse 2026-06-12T20:50:24,306 copying omicverse/_settings.py -> build/lib/omicverse 2026-06-12T20:50:24,309 copying omicverse/_oom_compat.py -> build/lib/omicverse 2026-06-12T20:50:24,310 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-06-12T20:50:24,313 copying omicverse/cli.py -> build/lib/omicverse 2026-06-12T20:50:24,315 copying omicverse/__init__.py -> build/lib/omicverse 2026-06-12T20:50:24,317 copying omicverse/_monitor.py -> build/lib/omicverse 2026-06-12T20:50:24,320 creating build/lib/omicverse/llm 2026-06-12T20:50:24,321 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,323 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,328 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,330 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,332 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,335 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,337 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,340 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,343 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,346 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,349 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,352 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-06-12T20:50:24,357 creating build/lib/omicverse/airr 2026-06-12T20:50:24,358 copying omicverse/airr/plotting.py -> build/lib/omicverse/airr 2026-06-12T20:50:24,361 copying omicverse/airr/_tcr_gex.py -> build/lib/omicverse/airr 2026-06-12T20:50:24,364 copying omicverse/airr/_clonotype.py -> build/lib/omicverse/airr 2026-06-12T20:50:24,367 copying omicverse/airr/io.py -> build/lib/omicverse/airr 2026-06-12T20:50:24,370 copying omicverse/airr/_bulk.py -> build/lib/omicverse/airr 2026-06-12T20:50:24,373 copying omicverse/airr/_tcr.py -> build/lib/omicverse/airr 2026-06-12T20:50:24,377 copying omicverse/airr/_metrics.py -> build/lib/omicverse/airr 2026-06-12T20:50:24,380 copying omicverse/airr/__init__.py -> build/lib/omicverse/airr 2026-06-12T20:50:24,383 copying omicverse/airr/_bcr.py -> build/lib/omicverse/airr 2026-06-12T20:50:24,386 copying omicverse/airr/_qc.py -> build/lib/omicverse/airr 2026-06-12T20:50:24,389 creating build/lib/omicverse/epi 2026-06-12T20:50:24,391 copying omicverse/epi/_utils.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,393 copying omicverse/epi/io.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,395 copying omicverse/epi/data.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,398 copying omicverse/epi/pp.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,400 copying omicverse/epi/bulk.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,402 copying omicverse/epi/tl.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,405 copying omicverse/epi/upstream.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,407 copying omicverse/epi/__init__.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,409 copying omicverse/epi/single.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,411 copying omicverse/epi/datasets.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,413 copying omicverse/epi/pl.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,415 copying omicverse/epi/utils.py -> build/lib/omicverse/epi 2026-06-12T20:50:24,418 creating build/lib/omicverse/jarvis 2026-06-12T20:50:24,419 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,422 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,424 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,427 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,430 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,433 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,435 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,438 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,440 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,443 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,446 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,449 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,451 copying omicverse/jarvis/gemini_cli_oauth.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,454 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-06-12T20:50:24,458 creating build/lib/omicverse/mcp 2026-06-12T20:50:24,460 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,463 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,466 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,469 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,472 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,475 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,477 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,479 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,482 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,484 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,487 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,490 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,492 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-06-12T20:50:24,498 creating build/lib/omicverse/protein 2026-06-12T20:50:24,499 copying omicverse/protein/plotting.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,502 copying omicverse/protein/_norm.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,505 copying omicverse/protein/_design.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,507 copying omicverse/protein/io.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,510 copying omicverse/protein/_impute.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,513 copying omicverse/protein/_enrich.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,515 copying omicverse/protein/_de.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,518 copying omicverse/protein/__init__.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,521 copying omicverse/protein/_simulate.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,524 copying omicverse/protein/_qc.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,526 copying omicverse/protein/_summarize.py -> build/lib/omicverse/protein 2026-06-12T20:50:24,530 creating build/lib/omicverse/es 2026-06-12T20:50:24,532 copying omicverse/es/_aucell.py -> build/lib/omicverse/es 2026-06-12T20:50:24,534 copying omicverse/es/_methods.py -> build/lib/omicverse/es 2026-06-12T20:50:24,537 copying omicverse/es/_mdt.py -> build/lib/omicverse/es 2026-06-12T20:50:24,539 copying omicverse/es/_consensus.py -> build/lib/omicverse/es 2026-06-12T20:50:24,541 copying omicverse/es/_udt.py -> build/lib/omicverse/es 2026-06-12T20:50:24,544 copying omicverse/es/_engine.py -> build/lib/omicverse/es 2026-06-12T20:50:24,547 copying omicverse/es/_gsea.py -> build/lib/omicverse/es 2026-06-12T20:50:24,549 copying omicverse/es/_ulm.py -> build/lib/omicverse/es 2026-06-12T20:50:24,552 copying omicverse/es/_ucell.py -> build/lib/omicverse/es 2026-06-12T20:50:24,554 copying omicverse/es/_odeps.py -> build/lib/omicverse/es 2026-06-12T20:50:24,556 copying omicverse/es/_ora.py -> build/lib/omicverse/es 2026-06-12T20:50:24,558 copying omicverse/es/_net.py -> build/lib/omicverse/es 2026-06-12T20:50:24,561 copying omicverse/es/_decouple.py -> build/lib/omicverse/es 2026-06-12T20:50:24,562 copying omicverse/es/_zscore.py -> build/lib/omicverse/es 2026-06-12T20:50:24,565 copying omicverse/es/_pv.py -> build/lib/omicverse/es 2026-06-12T20:50:24,567 copying omicverse/es/_mlm.py -> build/lib/omicverse/es 2026-06-12T20:50:24,569 copying omicverse/es/_run.py -> build/lib/omicverse/es 2026-06-12T20:50:24,571 copying omicverse/es/_gsva.py -> build/lib/omicverse/es 2026-06-12T20:50:24,574 copying omicverse/es/_method.py -> build/lib/omicverse/es 2026-06-12T20:50:24,576 copying omicverse/es/__init__.py -> build/lib/omicverse/es 2026-06-12T20:50:24,578 copying omicverse/es/_data.py -> build/lib/omicverse/es 2026-06-12T20:50:24,580 copying omicverse/es/_datatype.py -> build/lib/omicverse/es 2026-06-12T20:50:24,582 copying omicverse/es/_viper.py -> build/lib/omicverse/es 2026-06-12T20:50:24,585 copying omicverse/es/_waggr.py -> build/lib/omicverse/es 2026-06-12T20:50:24,587 copying omicverse/es/_query_set.py -> build/lib/omicverse/es 2026-06-12T20:50:24,590 creating build/lib/omicverse/agent 2026-06-12T20:50:24,591 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-06-12T20:50:24,594 creating build/lib/omicverse/bulk 2026-06-12T20:50:24,595 copying omicverse/bulk/_gsea_numpy.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,597 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,599 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,602 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,604 copying omicverse/bulk/_ora.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,607 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,609 copying omicverse/bulk/_enrich_plot.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,611 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,613 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,625 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,628 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,631 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,634 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,636 copying omicverse/bulk/_wgcna.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,639 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-06-12T20:50:24,642 creating build/lib/omicverse/space 2026-06-12T20:50:24,643 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-06-12T20:50:24,646 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-06-12T20:50:24,647 copying omicverse/space/_split.py -> build/lib/omicverse/space 2026-06-12T20:50:24,650 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-06-12T20:50:24,653 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-06-12T20:50:24,656 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-06-12T20:50:24,658 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-06-12T20:50:24,660 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-06-12T20:50:24,663 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-06-12T20:50:24,666 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-06-12T20:50:24,668 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-06-12T20:50:24,670 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-06-12T20:50:24,674 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-06-12T20:50:24,676 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-06-12T20:50:24,679 copying omicverse/space/_tissue_zones.py -> build/lib/omicverse/space 2026-06-12T20:50:24,682 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-06-12T20:50:24,684 copying omicverse/space/_cellcharter.py -> build/lib/omicverse/space 2026-06-12T20:50:24,688 creating build/lib/omicverse/single 2026-06-12T20:50:24,689 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-06-12T20:50:24,692 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-06-12T20:50:24,694 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-06-12T20:50:24,697 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-06-12T20:50:24,701 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-06-12T20:50:24,704 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-06-12T20:50:24,706 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-06-12T20:50:24,709 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-06-12T20:50:24,712 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-06-12T20:50:24,715 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-06-12T20:50:24,717 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-06-12T20:50:24,720 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-06-12T20:50:24,723 copying omicverse/single/_metabolism.py -> build/lib/omicverse/single 2026-06-12T20:50:24,726 copying omicverse/single/_pseudobulk.py -> build/lib/omicverse/single 2026-06-12T20:50:24,728 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-06-12T20:50:24,731 copying omicverse/single/_pseudotime_fate.py -> build/lib/omicverse/single 2026-06-12T20:50:24,735 copying omicverse/single/_cnv.py -> build/lib/omicverse/single 2026-06-12T20:50:24,737 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-06-12T20:50:24,740 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-06-12T20:50:24,744 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-06-12T20:50:24,747 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-06-12T20:50:24,750 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-06-12T20:50:24,753 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-06-12T20:50:24,757 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-06-12T20:50:24,759 copying omicverse/single/_dynamic_features.py -> build/lib/omicverse/single 2026-06-12T20:50:24,762 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-06-12T20:50:24,764 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-06-12T20:50:24,767 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-06-12T20:50:24,770 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-06-12T20:50:24,773 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-06-12T20:50:24,776 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-06-12T20:50:24,779 copying omicverse/single/_stavia.py -> build/lib/omicverse/single 2026-06-12T20:50:24,782 copying omicverse/single/_perturb.py -> build/lib/omicverse/single 2026-06-12T20:50:24,785 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-06-12T20:50:24,787 copying omicverse/single/_monocle.py -> build/lib/omicverse/single 2026-06-12T20:50:24,790 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-06-12T20:50:24,793 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-06-12T20:50:24,797 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-06-12T20:50:24,801 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-06-12T20:50:24,806 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-06-12T20:50:24,809 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-06-12T20:50:24,811 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-06-12T20:50:24,812 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-06-12T20:50:24,815 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-06-12T20:50:24,818 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-06-12T20:50:24,821 copying omicverse/single/_comm.py -> build/lib/omicverse/single 2026-06-12T20:50:24,823 copying omicverse/single/_nmf.py -> build/lib/omicverse/single 2026-06-12T20:50:24,826 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-06-12T20:50:24,829 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-06-12T20:50:24,837 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-06-12T20:50:24,840 copying omicverse/single/_liana.py -> build/lib/omicverse/single 2026-06-12T20:50:24,843 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-06-12T20:50:24,845 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-06-12T20:50:24,848 copying omicverse/single/_autoresolution.py -> build/lib/omicverse/single 2026-06-12T20:50:24,851 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-06-12T20:50:24,854 copying omicverse/single/_augur.py -> build/lib/omicverse/single 2026-06-12T20:50:24,857 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-06-12T20:50:24,860 creating build/lib/omicverse/external 2026-06-12T20:50:24,861 copying omicverse/external/torch_tsne.py -> build/lib/omicverse/external 2026-06-12T20:50:24,864 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-06-12T20:50:24,867 creating build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:24,868 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:24,870 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:24,871 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:24,874 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:24,876 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:24,878 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:24,880 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:24,883 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:24,885 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:24,888 creating build/lib/omicverse/alignment 2026-06-12T20:50:24,889 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,891 copying omicverse/alignment/cutadapt.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,893 copying omicverse/alignment/mafft.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,895 copying omicverse/alignment/dada2.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,897 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,899 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,902 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,904 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,907 copying omicverse/alignment/simpleaf.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,910 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,912 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,914 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,916 copying omicverse/alignment/amplicon_16s.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,919 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,921 copying omicverse/alignment/vsearch.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,923 copying omicverse/alignment/fasttree.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,925 copying omicverse/alignment/_db.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,928 copying omicverse/alignment/phylogeny.py -> build/lib/omicverse/alignment 2026-06-12T20:50:24,930 creating build/lib/omicverse/metabol 2026-06-12T20:50:24,931 copying omicverse/metabol/plotting.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,934 copying omicverse/metabol/_utils.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,936 copying omicverse/metabol/_norm.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,938 copying omicverse/metabol/io.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,940 copying omicverse/metabol/_impute.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,943 copying omicverse/metabol/_biomarker.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,945 copying omicverse/metabol/_msea.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,947 copying omicverse/metabol/_multifactor.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,950 copying omicverse/metabol/_correlation.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,952 copying omicverse/metabol/_batch.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,954 copying omicverse/metabol/_integration.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,956 copying omicverse/metabol/_id_mapping.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,959 copying omicverse/metabol/_fetchers.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,961 copying omicverse/metabol/__init__.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,964 copying omicverse/metabol/pymetabo.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,966 copying omicverse/metabol/_mummichog.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,969 copying omicverse/metabol/_lipidomics.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,972 copying omicverse/metabol/_qc.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,975 copying omicverse/metabol/_transform.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,978 copying omicverse/metabol/_plsda.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,980 copying omicverse/metabol/_stats.py -> build/lib/omicverse/metabol 2026-06-12T20:50:24,984 creating build/lib/omicverse/mol 2026-06-12T20:50:24,985 copying omicverse/mol/_pocket.py -> build/lib/omicverse/mol 2026-06-12T20:50:24,988 copying omicverse/mol/_view.py -> build/lib/omicverse/mol 2026-06-12T20:50:24,991 copying omicverse/mol/_dock.py -> build/lib/omicverse/mol 2026-06-12T20:50:24,994 copying omicverse/mol/__init__.py -> build/lib/omicverse/mol 2026-06-12T20:50:24,996 copying omicverse/mol/_check.py -> build/lib/omicverse/mol 2026-06-12T20:50:24,999 copying omicverse/mol/_structure.py -> build/lib/omicverse/mol 2026-06-12T20:50:25,002 copying omicverse/mol/_drugs.py -> build/lib/omicverse/mol 2026-06-12T20:50:25,008 creating build/lib/omicverse/datasets 2026-06-12T20:50:25,009 copying omicverse/datasets/_metabolism.py -> build/lib/omicverse/datasets 2026-06-12T20:50:25,013 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-06-12T20:50:25,015 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-06-12T20:50:25,019 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-06-12T20:50:25,021 copying omicverse/datasets/_genetics.py -> build/lib/omicverse/datasets 2026-06-12T20:50:25,024 copying omicverse/datasets/_ev.py -> build/lib/omicverse/datasets 2026-06-12T20:50:25,026 copying omicverse/datasets/_timecourse.py -> build/lib/omicverse/datasets 2026-06-12T20:50:25,028 copying omicverse/datasets/_airr.py -> build/lib/omicverse/datasets 2026-06-12T20:50:25,031 copying omicverse/datasets/_ambient.py -> build/lib/omicverse/datasets 2026-06-12T20:50:25,033 copying omicverse/datasets/_protein.py -> build/lib/omicverse/datasets 2026-06-12T20:50:25,036 creating build/lib/omicverse/bulk2single 2026-06-12T20:50:25,038 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-06-12T20:50:25,040 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-06-12T20:50:25,043 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-06-12T20:50:25,046 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-06-12T20:50:25,048 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-06-12T20:50:25,051 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-06-12T20:50:25,054 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-06-12T20:50:25,057 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-06-12T20:50:25,060 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-06-12T20:50:25,063 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-06-12T20:50:25,066 creating build/lib/omicverse/report 2026-06-12T20:50:25,067 copying omicverse/report/_scanner.py -> build/lib/omicverse/report 2026-06-12T20:50:25,070 copying omicverse/report/_html.py -> build/lib/omicverse/report 2026-06-12T20:50:25,072 copying omicverse/report/_plots.py -> build/lib/omicverse/report 2026-06-12T20:50:25,075 copying omicverse/report/__init__.py -> build/lib/omicverse/report 2026-06-12T20:50:25,077 copying omicverse/report/_provenance.py -> build/lib/omicverse/report 2026-06-12T20:50:25,081 creating build/lib/omicverse/pl 2026-06-12T20:50:25,082 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,084 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,088 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,092 copying omicverse/pl/_metabolism.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,095 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,102 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,105 copying omicverse/pl/_cnv.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,108 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,111 copying omicverse/pl/_funkyheatmap.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,113 copying omicverse/pl/_report.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,116 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,119 copying omicverse/pl/_plot1cell.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,122 copying omicverse/pl/_dynamic_trends.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,125 copying omicverse/pl/_trajectory.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,130 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,133 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,137 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,140 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,143 copying omicverse/pl/_scatterplot_backend.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,147 copying omicverse/pl/_ccc.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,154 copying omicverse/pl/_venn_backend.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,156 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,159 copying omicverse/pl/_upset.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,162 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,164 copying omicverse/pl/_branch_streamplot.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,167 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,171 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,174 copying omicverse/pl/_scanpy_compat.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,177 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,180 copying omicverse/pl/_plot_backend.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,183 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,187 copying omicverse/pl/_heatmap_marsilea.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,194 copying omicverse/pl/_metacell.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,196 copying omicverse/pl/_qc.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,198 copying omicverse/pl/_nanostring.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,202 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,204 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,208 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,216 copying omicverse/pl/_perturbation.py -> build/lib/omicverse/pl 2026-06-12T20:50:25,222 creating build/lib/omicverse/utils 2026-06-12T20:50:25,223 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,227 copying omicverse/utils/agent_backend_streaming.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,232 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,236 copying omicverse/utils/registry.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,239 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,242 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,250 copying omicverse/utils/agent_backend_openai.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,256 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,259 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,263 copying omicverse/utils/agent_backend_anthropic.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,267 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,270 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,273 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,276 copying omicverse/utils/_sample_metadata_alignment.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,281 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,285 copying omicverse/utils/agent_backend_dashscope.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,287 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,293 copying omicverse/utils/_gene_id_conversion.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,298 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,301 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,304 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,309 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,312 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,315 copying omicverse/utils/_seed.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,318 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,322 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,325 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,328 copying omicverse/utils/_ovagent_paths.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,330 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,333 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,336 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,339 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,342 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,345 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,348 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,351 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,354 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,356 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,358 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,360 copying omicverse/utils/_ovagent_lookup.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,363 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,366 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,368 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,370 copying omicverse/utils/agent_backend_common.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,373 copying omicverse/utils/_compat.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,376 copying omicverse/utils/_memory.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,378 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,381 copying omicverse/utils/agent_backend_gemini.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,384 copying omicverse/utils/_metabolights.py -> build/lib/omicverse/utils 2026-06-12T20:50:25,388 creating build/lib/omicverse/pp 2026-06-12T20:50:25,389 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,393 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,396 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,399 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,402 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,405 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,408 copying omicverse/pp/_scdblfinder.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,411 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,413 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,416 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,420 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,423 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,426 copying omicverse/pp/_tsne_cpu.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,431 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,434 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,437 copying omicverse/pp/_gpu_cache.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,439 copying omicverse/pp/_leiden_gpu.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,442 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,444 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,450 copying omicverse/pp/_doubletfinder.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,454 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,456 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,458 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,461 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,463 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,467 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,470 copying omicverse/pp/_champ.py -> build/lib/omicverse/pp 2026-06-12T20:50:25,473 creating build/lib/omicverse/io 2026-06-12T20:50:25,474 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-06-12T20:50:25,476 creating build/lib/omicverse/micro 2026-06-12T20:50:25,477 copying omicverse/micro/_phylo.py -> build/lib/omicverse/micro 2026-06-12T20:50:25,479 copying omicverse/micro/_utils.py -> build/lib/omicverse/micro 2026-06-12T20:50:25,481 copying omicverse/micro/_pp.py -> build/lib/omicverse/micro 2026-06-12T20:50:25,483 copying omicverse/micro/_ord.py -> build/lib/omicverse/micro 2026-06-12T20:50:25,486 copying omicverse/micro/_meta.py -> build/lib/omicverse/micro 2026-06-12T20:50:25,488 copying omicverse/micro/__init__.py -> build/lib/omicverse/micro 2026-06-12T20:50:25,490 copying omicverse/micro/_pair.py -> build/lib/omicverse/micro 2026-06-12T20:50:25,493 copying omicverse/micro/_diversity.py -> build/lib/omicverse/micro 2026-06-12T20:50:25,495 copying omicverse/micro/_da.py -> build/lib/omicverse/micro 2026-06-12T20:50:25,499 creating build/lib/omicverse/genetics 2026-06-12T20:50:25,500 copying omicverse/genetics/plotting.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,503 copying omicverse/genetics/_utils.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,507 copying omicverse/genetics/io.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,509 copying omicverse/genetics/_twas.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,512 copying omicverse/genetics/_coloc.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,514 copying omicverse/genetics/_eqtl.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,516 copying omicverse/genetics/_scdrs.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,519 copying omicverse/genetics/__init__.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,521 copying omicverse/genetics/_simulate.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,524 copying omicverse/genetics/_gwas.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,526 copying omicverse/genetics/_mr.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,529 copying omicverse/genetics/_gsmap.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,532 copying omicverse/genetics/_ldsc.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,534 copying omicverse/genetics/_finemap.py -> build/lib/omicverse/genetics 2026-06-12T20:50:25,537 creating build/lib/omicverse/llm/scgpt 2026-06-12T20:50:25,538 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-06-12T20:50:25,540 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-06-12T20:50:25,542 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-06-12T20:50:25,544 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-06-12T20:50:25,547 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-06-12T20:50:25,549 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-06-12T20:50:25,551 creating build/lib/omicverse/llm/CellPLM 2026-06-12T20:50:25,552 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-06-12T20:50:25,554 creating build/lib/omicverse/llm/scfoundation 2026-06-12T20:50:25,555 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-06-12T20:50:25,558 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-06-12T20:50:25,559 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-06-12T20:50:25,561 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-06-12T20:50:25,564 creating build/lib/omicverse/llm/dr 2026-06-12T20:50:25,565 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-06-12T20:50:25,567 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-06-12T20:50:25,569 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-06-12T20:50:25,570 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-06-12T20:50:25,572 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-06-12T20:50:25,575 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-06-12T20:50:25,577 creating build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,578 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,582 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,584 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,587 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,590 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,593 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,596 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,600 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,603 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,605 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,607 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,610 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-06-12T20:50:25,614 creating build/lib/omicverse/llm/utils 2026-06-12T20:50:25,615 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-06-12T20:50:25,617 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-06-12T20:50:25,620 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-06-12T20:50:25,622 creating build/lib/omicverse/llm/UCE 2026-06-12T20:50:25,623 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-06-12T20:50:25,626 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-06-12T20:50:25,628 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-06-12T20:50:25,630 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-06-12T20:50:25,631 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-06-12T20:50:25,634 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-06-12T20:50:25,636 creating build/lib/omicverse/llm/domain_research 2026-06-12T20:50:25,637 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-06-12T20:50:25,640 creating build/lib/omicverse/llm/scgpt/tasks 2026-06-12T20:50:25,641 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-06-12T20:50:25,643 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-06-12T20:50:25,645 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-06-12T20:50:25,648 creating build/lib/omicverse/llm/scgpt/scbank 2026-06-12T20:50:25,649 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-12T20:50:25,651 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-12T20:50:25,653 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-12T20:50:25,655 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-12T20:50:25,657 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-12T20:50:25,660 creating build/lib/omicverse/llm/scgpt/model 2026-06-12T20:50:25,661 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-06-12T20:50:25,663 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-06-12T20:50:25,665 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-06-12T20:50:25,668 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-06-12T20:50:25,671 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-06-12T20:50:25,673 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-06-12T20:50:25,675 creating build/lib/omicverse/llm/scgpt/utils 2026-06-12T20:50:25,676 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-06-12T20:50:25,679 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-06-12T20:50:25,681 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-06-12T20:50:25,682 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-12T20:50:25,684 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-12T20:50:25,687 creating build/lib/omicverse/llm/CellPLM/embedder 2026-06-12T20:50:25,688 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-06-12T20:50:25,690 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-06-12T20:50:25,692 creating build/lib/omicverse/llm/CellPLM/model 2026-06-12T20:50:25,693 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-06-12T20:50:25,695 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-06-12T20:50:25,697 creating build/lib/omicverse/llm/CellPLM/decoder 2026-06-12T20:50:25,698 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-06-12T20:50:25,700 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-06-12T20:50:25,702 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-06-12T20:50:25,705 creating build/lib/omicverse/llm/CellPLM/latent 2026-06-12T20:50:25,706 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-12T20:50:25,708 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-12T20:50:25,710 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-12T20:50:25,712 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-12T20:50:25,715 creating build/lib/omicverse/llm/CellPLM/layer 2026-06-12T20:50:25,716 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-12T20:50:25,718 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-12T20:50:25,721 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-12T20:50:25,722 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-12T20:50:25,724 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-12T20:50:25,728 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:25,729 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:25,731 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:25,733 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:25,735 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:25,738 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:25,740 creating build/lib/omicverse/llm/CellPLM/encoder 2026-06-12T20:50:25,741 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-06-12T20:50:25,743 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-06-12T20:50:25,745 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-06-12T20:50:25,748 creating build/lib/omicverse/llm/CellPLM/utils 2026-06-12T20:50:25,748 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-12T20:50:25,752 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-12T20:50:25,754 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-12T20:50:25,757 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-12T20:50:25,759 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-12T20:50:25,760 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-12T20:50:25,763 creating build/lib/omicverse/llm/CellPLM/head 2026-06-12T20:50:25,764 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-06-12T20:50:25,767 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-06-12T20:50:25,769 creating build/lib/omicverse/llm/CellPLM/objective 2026-06-12T20:50:25,770 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-06-12T20:50:25,772 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-06-12T20:50:25,774 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-06-12T20:50:25,777 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:25,778 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:25,780 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:25,782 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:25,785 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:25,787 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:25,789 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:25,791 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:25,793 creating build/lib/omicverse/llm/dr/retrievers 2026-06-12T20:50:25,794 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-06-12T20:50:25,797 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-06-12T20:50:25,800 creating build/lib/omicverse/llm/dr/write 2026-06-12T20:50:25,801 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-06-12T20:50:25,803 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-06-12T20:50:25,805 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-06-12T20:50:25,807 creating build/lib/omicverse/llm/dr/scope 2026-06-12T20:50:25,808 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-06-12T20:50:25,810 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-06-12T20:50:25,811 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-06-12T20:50:25,813 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-06-12T20:50:25,815 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-06-12T20:50:25,817 creating build/lib/omicverse/llm/dr/research 2026-06-12T20:50:25,818 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-06-12T20:50:25,820 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-06-12T20:50:25,822 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-06-12T20:50:25,824 creating build/lib/omicverse/llm/dr/verify 2026-06-12T20:50:25,825 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-06-12T20:50:25,828 creating build/lib/omicverse/llm/geneformer/mtl 2026-06-12T20:50:25,829 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-12T20:50:25,831 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-12T20:50:25,833 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-12T20:50:25,835 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-12T20:50:25,837 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-12T20:50:25,839 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-12T20:50:25,842 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-12T20:50:25,845 creating build/lib/omicverse/llm/UCE/data_proc 2026-06-12T20:50:25,846 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-12T20:50:25,849 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-12T20:50:25,851 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-12T20:50:25,854 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-12T20:50:25,856 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-12T20:50:25,859 creating build/lib/omicverse/llm/domain_research/retrievers 2026-06-12T20:50:25,860 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-06-12T20:50:25,862 creating build/lib/omicverse/llm/domain_research/write 2026-06-12T20:50:25,863 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-06-12T20:50:25,865 creating build/lib/omicverse/jarvis/memory 2026-06-12T20:50:25,866 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-06-12T20:50:25,869 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-06-12T20:50:25,871 creating build/lib/omicverse/jarvis/gateway 2026-06-12T20:50:25,872 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-06-12T20:50:25,874 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-06-12T20:50:25,876 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-06-12T20:50:25,879 creating build/lib/omicverse/jarvis/channels 2026-06-12T20:50:25,880 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-06-12T20:50:25,883 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-06-12T20:50:25,886 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-06-12T20:50:25,889 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-06-12T20:50:25,892 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-06-12T20:50:25,893 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-06-12T20:50:25,897 copying omicverse/jarvis/channels/channel_core.py -> build/lib/omicverse/jarvis/channels 2026-06-12T20:50:25,900 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-06-12T20:50:25,904 creating build/lib/omicverse/jarvis/runtime 2026-06-12T20:50:25,905 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-06-12T20:50:25,906 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-06-12T20:50:25,908 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-06-12T20:50:25,910 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-06-12T20:50:25,912 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-06-12T20:50:25,914 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-06-12T20:50:25,916 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-06-12T20:50:25,919 creating build/lib/omicverse/mcp/adapters 2026-06-12T20:50:25,919 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-06-12T20:50:25,922 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-06-12T20:50:25,924 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-06-12T20:50:25,926 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-06-12T20:50:25,928 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-06-12T20:50:25,931 creating build/lib/omicverse/bulk/_alignment 2026-06-12T20:50:25,932 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-06-12T20:50:25,934 creating build/lib/omicverse/space/histo 2026-06-12T20:50:25,935 copying omicverse/space/histo/_stpath.py -> build/lib/omicverse/space/histo 2026-06-12T20:50:25,938 copying omicverse/space/histo/_dispatch.py -> build/lib/omicverse/space/histo 2026-06-12T20:50:25,940 copying omicverse/space/histo/_embed.py -> build/lib/omicverse/space/histo 2026-06-12T20:50:25,942 copying omicverse/space/histo/_stflow.py -> build/lib/omicverse/space/histo 2026-06-12T20:50:25,945 copying omicverse/space/histo/_istar.py -> build/lib/omicverse/space/histo 2026-06-12T20:50:25,948 copying omicverse/space/histo/__init__.py -> build/lib/omicverse/space/histo 2026-06-12T20:50:25,950 copying omicverse/space/histo/_io.py -> build/lib/omicverse/space/histo 2026-06-12T20:50:25,952 copying omicverse/space/histo/_hest_fm.py -> build/lib/omicverse/space/histo 2026-06-12T20:50:25,954 copying omicverse/space/histo/_demo.py -> build/lib/omicverse/space/histo 2026-06-12T20:50:25,957 creating build/lib/omicverse/single/_metacell_backends 2026-06-12T20:50:25,958 copying omicverse/single/_metacell_backends/geosketch_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-12T20:50:25,960 copying omicverse/single/_metacell_backends/metaq_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-12T20:50:25,962 copying omicverse/single/_metacell_backends/mc2_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-12T20:50:25,964 copying omicverse/single/_metacell_backends/supercell_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-12T20:50:25,966 copying omicverse/single/_metacell_backends/kmeans_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-12T20:50:25,968 copying omicverse/single/_metacell_backends/base.py -> build/lib/omicverse/single/_metacell_backends 2026-06-12T20:50:25,970 copying omicverse/single/_metacell_backends/seacells_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-12T20:50:25,972 copying omicverse/single/_metacell_backends/__init__.py -> build/lib/omicverse/single/_metacell_backends 2026-06-12T20:50:25,974 copying omicverse/single/_metacell_backends/random_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-12T20:50:25,976 creating build/lib/omicverse/single/ev 2026-06-12T20:50:25,977 copying omicverse/single/ev/_preprocess.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:25,979 copying omicverse/single/ev/plotting.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:25,981 copying omicverse/single/ev/_pseudobulk.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:25,983 copying omicverse/single/ev/io.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:25,986 copying omicverse/single/ev/_coloc.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:25,989 copying omicverse/single/ev/_annotate.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:25,992 copying omicverse/single/ev/_markers.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:25,994 copying omicverse/single/ev/_report.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:25,997 copying omicverse/single/ev/_cluster.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:25,999 copying omicverse/single/ev/__init__.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:26,001 copying omicverse/single/ev/_qc.py -> build/lib/omicverse/single/ev 2026-06-12T20:50:26,004 creating build/lib/omicverse/single/templates 2026-06-12T20:50:26,005 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-06-12T20:50:26,007 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-06-12T20:50:26,010 creating build/lib/omicverse/external/PROST 2026-06-12T20:50:26,011 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-06-12T20:50:26,013 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-06-12T20:50:26,015 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-06-12T20:50:26,018 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-06-12T20:50:26,020 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-06-12T20:50:26,022 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-06-12T20:50:26,025 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-06-12T20:50:26,028 creating build/lib/omicverse/external/nocd 2026-06-12T20:50:26,030 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-06-12T20:50:26,032 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-06-12T20:50:26,034 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-06-12T20:50:26,036 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-06-12T20:50:26,039 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-06-12T20:50:26,041 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-06-12T20:50:26,044 creating build/lib/omicverse/external/supercell 2026-06-12T20:50:26,045 copying omicverse/external/supercell/supercell.py -> build/lib/omicverse/external/supercell 2026-06-12T20:50:26,048 copying omicverse/external/supercell/__init__.py -> build/lib/omicverse/external/supercell 2026-06-12T20:50:26,051 creating build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,053 copying omicverse/external/pyensembl/locus_with_genome.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,055 copying omicverse/external/pyensembl/download_cache.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,058 copying omicverse/external/pyensembl/ensembl_versions.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,060 copying omicverse/external/pyensembl/exon.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,062 copying omicverse/external/pyensembl/locus.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,064 copying omicverse/external/pyensembl/ensembl_release.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,067 copying omicverse/external/pyensembl/species.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,070 copying omicverse/external/pyensembl/common.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,072 copying omicverse/external/pyensembl/genome.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,076 copying omicverse/external/pyensembl/gene.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,078 copying omicverse/external/pyensembl/__init__.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,080 copying omicverse/external/pyensembl/fasta.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,083 copying omicverse/external/pyensembl/ensembl_url_templates.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,086 copying omicverse/external/pyensembl/transcript.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,089 copying omicverse/external/pyensembl/reference_name.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,091 copying omicverse/external/pyensembl/shell.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,094 copying omicverse/external/pyensembl/serializable.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,097 copying omicverse/external/pyensembl/database.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,100 copying omicverse/external/pyensembl/normalization.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,102 copying omicverse/external/pyensembl/search.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,104 copying omicverse/external/pyensembl/version.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,107 copying omicverse/external/pyensembl/sequence_data.py -> build/lib/omicverse/external/pyensembl 2026-06-12T20:50:26,110 creating build/lib/omicverse/external/scanorama 2026-06-12T20:50:26,111 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-06-12T20:50:26,114 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-06-12T20:50:26,117 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-06-12T20:50:26,120 creating build/lib/omicverse/external/starfysh 2026-06-12T20:50:26,121 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-06-12T20:50:26,124 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-06-12T20:50:26,128 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-06-12T20:50:26,130 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-06-12T20:50:26,133 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-06-12T20:50:26,134 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-06-12T20:50:26,137 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-06-12T20:50:26,139 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-06-12T20:50:26,141 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-06-12T20:50:26,144 creating build/lib/omicverse/external/cellanova 2026-06-12T20:50:26,145 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-06-12T20:50:26,148 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-06-12T20:50:26,149 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-06-12T20:50:26,152 creating build/lib/omicverse/external/pylimma 2026-06-12T20:50:26,152 copying omicverse/external/pylimma/fit.py -> build/lib/omicverse/external/pylimma 2026-06-12T20:50:26,156 copying omicverse/external/pylimma/__init__.py -> build/lib/omicverse/external/pylimma 2026-06-12T20:50:26,158 creating build/lib/omicverse/external/mebocost 2026-06-12T20:50:26,159 copying omicverse/external/mebocost/mebocost.py -> build/lib/omicverse/external/mebocost 2026-06-12T20:50:26,163 copying omicverse/external/mebocost/crosstalk_diff.py -> build/lib/omicverse/external/mebocost 2026-06-12T20:50:26,166 copying omicverse/external/mebocost/crosstalk_plots.py -> build/lib/omicverse/external/mebocost 2026-06-12T20:50:26,169 copying omicverse/external/mebocost/__init__.py -> build/lib/omicverse/external/mebocost 2026-06-12T20:50:26,172 copying omicverse/external/mebocost/crosstalk_calculator.py -> build/lib/omicverse/external/mebocost 2026-06-12T20:50:26,174 copying omicverse/external/mebocost/fba_handler.py -> build/lib/omicverse/external/mebocost 2026-06-12T20:50:26,176 copying omicverse/external/mebocost/MetEstimator.py -> build/lib/omicverse/external/mebocost 2026-06-12T20:50:26,179 creating build/lib/omicverse/external/datacollect 2026-06-12T20:50:26,180 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-06-12T20:50:26,183 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-06-12T20:50:26,185 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-06-12T20:50:26,188 creating build/lib/omicverse/external/umap_pytorch 2026-06-12T20:50:26,189 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-06-12T20:50:26,192 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-06-12T20:50:26,195 copying omicverse/external/umap_pytorch/fuzzy_gpu.py -> build/lib/omicverse/external/umap_pytorch 2026-06-12T20:50:26,197 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-06-12T20:50:26,200 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-06-12T20:50:26,202 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-06-12T20:50:26,204 creating build/lib/omicverse/external/py_scmetabolism 2026-06-12T20:50:26,205 copying omicverse/external/py_scmetabolism/compute.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-12T20:50:26,207 copying omicverse/external/py_scmetabolism/methods.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-12T20:50:26,209 copying omicverse/external/py_scmetabolism/visualize.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-12T20:50:26,212 copying omicverse/external/py_scmetabolism/__init__.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-12T20:50:26,214 creating build/lib/omicverse/external/SpatialDE 2026-06-12T20:50:26,215 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-06-12T20:50:26,217 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-06-12T20:50:26,219 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-06-12T20:50:26,221 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-06-12T20:50:26,223 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-06-12T20:50:26,225 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-06-12T20:50:26,227 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-06-12T20:50:26,229 creating build/lib/omicverse/external/scTenifold 2026-06-12T20:50:26,230 copying omicverse/external/scTenifold/__init__.py -> build/lib/omicverse/external/scTenifold 2026-06-12T20:50:26,232 copying omicverse/external/scTenifold/__main__.py -> build/lib/omicverse/external/scTenifold 2026-06-12T20:50:26,234 creating build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,235 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,237 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,239 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,242 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,244 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,247 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,249 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,251 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,253 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,255 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,257 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,259 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-06-12T20:50:26,262 creating build/lib/omicverse/external/spatrio 2026-06-12T20:50:26,263 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-06-12T20:50:26,265 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-06-12T20:50:26,267 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-06-12T20:50:26,269 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-06-12T20:50:26,271 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-06-12T20:50:26,273 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-06-12T20:50:26,276 creating build/lib/omicverse/external/monocle2_py 2026-06-12T20:50:26,277 copying omicverse/external/monocle2_py/plotting.py -> build/lib/omicverse/external/monocle2_py 2026-06-12T20:50:26,281 copying omicverse/external/monocle2_py/ddrtree.py -> build/lib/omicverse/external/monocle2_py 2026-06-12T20:50:26,283 copying omicverse/external/monocle2_py/clustering.py -> build/lib/omicverse/external/monocle2_py 2026-06-12T20:50:26,285 copying omicverse/external/monocle2_py/ordering.py -> build/lib/omicverse/external/monocle2_py 2026-06-12T20:50:26,288 copying omicverse/external/monocle2_py/differential.py -> build/lib/omicverse/external/monocle2_py 2026-06-12T20:50:26,290 copying omicverse/external/monocle2_py/core.py -> build/lib/omicverse/external/monocle2_py 2026-06-12T20:50:26,292 copying omicverse/external/monocle2_py/dimension_reduction.py -> build/lib/omicverse/external/monocle2_py 2026-06-12T20:50:26,295 copying omicverse/external/monocle2_py/__init__.py -> build/lib/omicverse/external/monocle2_py 2026-06-12T20:50:26,296 copying omicverse/external/monocle2_py/utils.py -> build/lib/omicverse/external/monocle2_py 2026-06-12T20:50:26,299 creating build/lib/omicverse/external/palantir 2026-06-12T20:50:26,300 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,303 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,306 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,308 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,310 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,313 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,314 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,316 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,318 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,320 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,322 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-06-12T20:50:26,325 creating build/lib/omicverse/external/cytotrace2 2026-06-12T20:50:26,326 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-06-12T20:50:26,328 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-06-12T20:50:26,331 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-06-12T20:50:26,333 creating build/lib/omicverse/external/mpl_chord 2026-06-12T20:50:26,334 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-06-12T20:50:26,336 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-06-12T20:50:26,339 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-06-12T20:50:26,341 creating build/lib/omicverse/external/geosketch 2026-06-12T20:50:26,342 copying omicverse/external/geosketch/sketch.py -> build/lib/omicverse/external/geosketch 2026-06-12T20:50:26,345 copying omicverse/external/geosketch/kmeanspp.py -> build/lib/omicverse/external/geosketch 2026-06-12T20:50:26,347 copying omicverse/external/geosketch/__init__.py -> build/lib/omicverse/external/geosketch 2026-06-12T20:50:26,348 copying omicverse/external/geosketch/utils.py -> build/lib/omicverse/external/geosketch 2026-06-12T20:50:26,351 creating build/lib/omicverse/external/VIA 2026-06-12T20:50:26,352 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-06-12T20:50:26,357 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-06-12T20:50:26,360 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-06-12T20:50:26,364 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-06-12T20:50:26,369 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-06-12T20:50:26,374 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-06-12T20:50:26,376 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-06-12T20:50:26,378 creating build/lib/omicverse/external/STT 2026-06-12T20:50:26,379 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-06-12T20:50:26,382 creating build/lib/omicverse/external/scfea 2026-06-12T20:50:26,383 copying omicverse/external/scfea/DatasetFlux.py -> build/lib/omicverse/external/scfea 2026-06-12T20:50:26,385 copying omicverse/external/scfea/ClassFlux.py -> build/lib/omicverse/external/scfea 2026-06-12T20:50:26,386 copying omicverse/external/scfea/util.py -> build/lib/omicverse/external/scfea 2026-06-12T20:50:26,388 copying omicverse/external/scfea/__init__.py -> build/lib/omicverse/external/scfea 2026-06-12T20:50:26,390 copying omicverse/external/scfea/scFEA.py -> build/lib/omicverse/external/scfea 2026-06-12T20:50:26,393 creating build/lib/omicverse/external/istar 2026-06-12T20:50:26,394 copying omicverse/external/istar/pixannot.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,396 copying omicverse/external/istar/cluster.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,399 copying omicverse/external/istar/connected_components.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,401 copying omicverse/external/istar/plot_imputed.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,402 copying omicverse/external/istar/enrich.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,404 copying omicverse/external/istar/select_genes.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,406 copying omicverse/external/istar/vision_transformer.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,408 copying omicverse/external/istar/aggregate_imputed.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,410 copying omicverse/external/istar/reduce_dim.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,412 copying omicverse/external/istar/impute.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,414 copying omicverse/external/istar/rescale.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,416 copying omicverse/external/istar/plot_spots.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,418 copying omicverse/external/istar/extract_features.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,420 copying omicverse/external/istar/differential.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,423 copying omicverse/external/istar/image.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,425 copying omicverse/external/istar/vision_transformer4k.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,428 copying omicverse/external/istar/structural_similarity.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,430 copying omicverse/external/istar/reorganize_imputed.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,432 copying omicverse/external/istar/hipt_heatmap_utils.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,434 copying omicverse/external/istar/__init__.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,436 copying omicverse/external/istar/impute_by_basic.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,438 copying omicverse/external/istar/hipt_4k.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,440 copying omicverse/external/istar/preprocess.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,442 copying omicverse/external/istar/marker_score.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,444 copying omicverse/external/istar/visual.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,446 copying omicverse/external/istar/get_mask.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,448 copying omicverse/external/istar/train.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,450 copying omicverse/external/istar/utils.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,452 copying omicverse/external/istar/hipt_model_utils.py -> build/lib/omicverse/external/istar 2026-06-12T20:50:26,455 creating build/lib/omicverse/external/mofapy2 2026-06-12T20:50:26,456 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-06-12T20:50:26,458 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-06-12T20:50:26,459 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-06-12T20:50:26,462 creating build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,463 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,465 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,467 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,469 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,471 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,472 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,474 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,476 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,478 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,480 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,483 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,485 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,487 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,488 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,491 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,493 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,494 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,496 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,499 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,501 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,503 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-06-12T20:50:26,506 creating build/lib/omicverse/external/somde 2026-06-12T20:50:26,507 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-06-12T20:50:26,509 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-06-12T20:50:26,512 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-06-12T20:50:26,514 creating build/lib/omicverse/external/spaco 2026-06-12T20:50:26,515 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-06-12T20:50:26,518 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-06-12T20:50:26,520 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-06-12T20:50:26,522 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-06-12T20:50:26,523 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-06-12T20:50:26,526 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-06-12T20:50:26,527 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-06-12T20:50:26,529 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-06-12T20:50:26,531 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-06-12T20:50:26,534 creating build/lib/omicverse/external/MetaQ 2026-06-12T20:50:26,534 copying omicverse/external/MetaQ/data_utils.py -> build/lib/omicverse/external/MetaQ 2026-06-12T20:50:26,537 copying omicverse/external/MetaQ/model.py -> build/lib/omicverse/external/MetaQ 2026-06-12T20:50:26,539 copying omicverse/external/MetaQ/__init__.py -> build/lib/omicverse/external/MetaQ 2026-06-12T20:50:26,541 copying omicverse/external/MetaQ/engine.py -> build/lib/omicverse/external/MetaQ 2026-06-12T20:50:26,543 creating build/lib/omicverse/external/CEFCON 2026-06-12T20:50:26,544 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-06-12T20:50:26,547 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-06-12T20:50:26,549 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-06-12T20:50:26,551 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-06-12T20:50:26,554 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-06-12T20:50:26,556 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-06-12T20:50:26,558 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-06-12T20:50:26,560 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-06-12T20:50:26,563 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-06-12T20:50:26,566 creating build/lib/omicverse/external/torch_pca 2026-06-12T20:50:26,567 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-06-12T20:50:26,569 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-06-12T20:50:26,571 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-06-12T20:50:26,573 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-06-12T20:50:26,575 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-06-12T20:50:26,577 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-06-12T20:50:26,580 creating build/lib/omicverse/external/pyedger 2026-06-12T20:50:26,581 copying omicverse/external/pyedger/core.py -> build/lib/omicverse/external/pyedger 2026-06-12T20:50:26,585 copying omicverse/external/pyedger/__init__.py -> build/lib/omicverse/external/pyedger 2026-06-12T20:50:26,587 creating build/lib/omicverse/external/graphvelo 2026-06-12T20:50:26,588 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-06-12T20:50:26,591 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-06-12T20:50:26,595 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-06-12T20:50:26,599 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-06-12T20:50:26,607 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-06-12T20:50:26,614 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-06-12T20:50:26,618 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-06-12T20:50:26,623 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-06-12T20:50:26,627 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-06-12T20:50:26,631 creating build/lib/omicverse/external/flowsig 2026-06-12T20:50:26,633 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-06-12T20:50:26,635 creating build/lib/omicverse/external/scdiffusion 2026-06-12T20:50:26,636 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-06-12T20:50:26,639 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-06-12T20:50:26,641 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-06-12T20:50:26,644 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-06-12T20:50:26,647 creating build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,648 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,650 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,653 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,655 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,659 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,663 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,666 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,671 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,676 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,678 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,680 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-06-12T20:50:26,683 creating build/lib/omicverse/external/BINARY 2026-06-12T20:50:26,684 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-06-12T20:50:26,687 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-06-12T20:50:26,689 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-06-12T20:50:26,691 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-06-12T20:50:26,696 creating build/lib/omicverse/external/STAGATE_pyG 2026-06-12T20:50:26,697 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-12T20:50:26,701 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-12T20:50:26,704 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-12T20:50:26,708 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-12T20:50:26,713 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-12T20:50:26,720 creating build/lib/omicverse/external/cnmf 2026-06-12T20:50:26,722 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-06-12T20:50:26,733 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-06-12T20:50:26,742 creating build/lib/omicverse/external/tape 2026-06-12T20:50:26,745 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-06-12T20:50:26,752 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-06-12T20:50:26,757 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-06-12T20:50:26,760 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-06-12T20:50:26,762 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-06-12T20:50:26,764 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-06-12T20:50:26,768 creating build/lib/omicverse/external/STAligner 2026-06-12T20:50:26,769 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-06-12T20:50:26,772 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-06-12T20:50:26,775 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-06-12T20:50:26,780 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-06-12T20:50:26,785 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-06-12T20:50:26,792 creating build/lib/omicverse/external/bulk2single 2026-06-12T20:50:26,794 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-06-12T20:50:26,801 creating build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,804 copying omicverse/external/gsmap/latent_to_gene.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,812 copying omicverse/external/gsmap/report.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,819 copying omicverse/external/gsmap/_config.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,826 copying omicverse/external/gsmap/_manhattan_plot.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,831 copying omicverse/external/gsmap/cauchy_combination.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,833 copying omicverse/external/gsmap/diagnosis.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,835 copying omicverse/external/gsmap/_visualize.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,838 copying omicverse/external/gsmap/spatial_ldsc.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,841 copying omicverse/external/gsmap/__init__.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,844 copying omicverse/external/gsmap/_regression_read.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,847 copying omicverse/external/gsmap/_jackknife.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,850 copying omicverse/external/gsmap/_style.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,853 copying omicverse/external/gsmap/generate_ldscore.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,856 copying omicverse/external/gsmap/find_latent_representation.py -> build/lib/omicverse/external/gsmap 2026-06-12T20:50:26,860 creating build/lib/omicverse/external/mcRigor 2026-06-12T20:50:26,862 copying omicverse/external/mcRigor/rigor.py -> build/lib/omicverse/external/mcRigor 2026-06-12T20:50:26,866 copying omicverse/external/mcRigor/__init__.py -> build/lib/omicverse/external/mcRigor 2026-06-12T20:50:26,869 creating build/lib/omicverse/external/bin2cell 2026-06-12T20:50:26,871 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-06-12T20:50:26,878 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-06-12T20:50:26,882 creating build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,883 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,888 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,892 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,897 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,902 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,910 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,916 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,920 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,922 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,924 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,927 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,929 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,932 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-06-12T20:50:26,935 creating build/lib/omicverse/external/PyWGCNA 2026-06-12T20:50:26,936 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-06-12T20:50:26,939 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-06-12T20:50:26,944 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-06-12T20:50:26,963 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-06-12T20:50:26,975 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-06-12T20:50:26,987 creating build/lib/omicverse/external/gaston 2026-06-12T20:50:26,989 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:26,996 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,003 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,009 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,017 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,024 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,027 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,030 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,033 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,041 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,050 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,059 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,068 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,070 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,072 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,074 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-06-12T20:50:27,077 creating build/lib/omicverse/external/harmony 2026-06-12T20:50:27,078 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-06-12T20:50:27,081 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-06-12T20:50:27,083 copying omicverse/external/harmony/_harmony_cpu.py -> build/lib/omicverse/external/harmony 2026-06-12T20:50:27,086 copying omicverse/external/harmony/_harmony_mlx.py -> build/lib/omicverse/external/harmony 2026-06-12T20:50:27,088 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-06-12T20:50:27,090 creating build/lib/omicverse/external/cellcharter 2026-06-12T20:50:27,091 copying omicverse/external/cellcharter/_utils.py -> build/lib/omicverse/external/cellcharter 2026-06-12T20:50:27,093 copying omicverse/external/cellcharter/_graph.py -> build/lib/omicverse/external/cellcharter 2026-06-12T20:50:27,096 copying omicverse/external/cellcharter/_autok.py -> build/lib/omicverse/external/cellcharter 2026-06-12T20:50:27,099 copying omicverse/external/cellcharter/_gmm.py -> build/lib/omicverse/external/cellcharter 2026-06-12T20:50:27,102 copying omicverse/external/cellcharter/__init__.py -> build/lib/omicverse/external/cellcharter 2026-06-12T20:50:27,105 copying omicverse/external/cellcharter/_aggr.py -> build/lib/omicverse/external/cellcharter 2026-06-12T20:50:27,109 creating build/lib/omicverse/external/topact 2026-06-12T20:50:27,110 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-06-12T20:50:27,112 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-06-12T20:50:27,113 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-06-12T20:50:27,116 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-06-12T20:50:27,118 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-06-12T20:50:27,121 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-06-12T20:50:27,123 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-06-12T20:50:27,125 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-06-12T20:50:27,128 creating build/lib/omicverse/external/ctxcore 2026-06-12T20:50:27,129 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-06-12T20:50:27,132 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-06-12T20:50:27,135 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-06-12T20:50:27,138 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-06-12T20:50:27,140 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-06-12T20:50:27,142 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-06-12T20:50:27,145 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-06-12T20:50:27,147 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-06-12T20:50:27,150 creating build/lib/omicverse/external/popv 2026-06-12T20:50:27,152 copying omicverse/external/popv/_utils.py -> build/lib/omicverse/external/popv 2026-06-12T20:50:27,154 copying omicverse/external/popv/visualization.py -> build/lib/omicverse/external/popv 2026-06-12T20:50:27,157 copying omicverse/external/popv/_settings.py -> build/lib/omicverse/external/popv 2026-06-12T20:50:27,159 copying omicverse/external/popv/annotation.py -> build/lib/omicverse/external/popv 2026-06-12T20:50:27,162 copying omicverse/external/popv/preprocessing.py -> build/lib/omicverse/external/popv 2026-06-12T20:50:27,165 copying omicverse/external/popv/__init__.py -> build/lib/omicverse/external/popv 2026-06-12T20:50:27,168 creating build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,169 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,173 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,175 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,178 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,180 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,183 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,185 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,187 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,189 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,192 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,194 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,197 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,199 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,201 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,204 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-06-12T20:50:27,207 creating build/lib/omicverse/external/commot 2026-06-12T20:50:27,208 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-06-12T20:50:27,211 creating build/lib/omicverse/external/NaiveDE 2026-06-12T20:50:27,212 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-06-12T20:50:27,215 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-06-12T20:50:27,217 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-06-12T20:50:27,219 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-06-12T20:50:27,221 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-06-12T20:50:27,223 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-06-12T20:50:27,226 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-06-12T20:50:27,228 creating build/lib/omicverse/external/GNTD 2026-06-12T20:50:27,230 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-06-12T20:50:27,232 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-06-12T20:50:27,235 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-06-12T20:50:27,238 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-06-12T20:50:27,240 creating build/lib/omicverse/external/CAST 2026-06-12T20:50:27,241 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-06-12T20:50:27,244 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-06-12T20:50:27,247 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-06-12T20:50:27,249 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-06-12T20:50:27,252 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-06-12T20:50:27,254 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-06-12T20:50:27,257 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-06-12T20:50:27,261 creating build/lib/omicverse/external/GraphST 2026-06-12T20:50:27,262 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-06-12T20:50:27,266 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-06-12T20:50:27,268 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-06-12T20:50:27,270 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-06-12T20:50:27,273 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-06-12T20:50:27,276 creating build/lib/omicverse/external/tosica 2026-06-12T20:50:27,277 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-06-12T20:50:27,280 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-06-12T20:50:27,282 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-06-12T20:50:27,284 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-06-12T20:50:27,287 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-06-12T20:50:27,290 creating build/lib/omicverse/external/forcedirect2 2026-06-12T20:50:27,292 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-06-12T20:50:27,294 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-06-12T20:50:27,297 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-06-12T20:50:27,299 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-06-12T20:50:27,301 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-06-12T20:50:27,304 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-06-12T20:50:27,307 creating build/lib/omicverse/external/scSLAT 2026-06-12T20:50:27,308 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-06-12T20:50:27,311 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-06-12T20:50:27,313 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-06-12T20:50:27,316 creating build/lib/omicverse/external/spaceflow 2026-06-12T20:50:27,317 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-06-12T20:50:27,320 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-06-12T20:50:27,322 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-06-12T20:50:27,325 creating build/lib/omicverse/external/gtfparse 2026-06-12T20:50:27,326 copying omicverse/external/gtfparse/create_missing_features.py -> build/lib/omicverse/external/gtfparse 2026-06-12T20:50:27,329 copying omicverse/external/gtfparse/attribute_parsing.py -> build/lib/omicverse/external/gtfparse 2026-06-12T20:50:27,332 copying omicverse/external/gtfparse/parsing_error.py -> build/lib/omicverse/external/gtfparse 2026-06-12T20:50:27,334 copying omicverse/external/gtfparse/__init__.py -> build/lib/omicverse/external/gtfparse 2026-06-12T20:50:27,336 copying omicverse/external/gtfparse/read_gtf.py -> build/lib/omicverse/external/gtfparse 2026-06-12T20:50:27,339 creating build/lib/omicverse/external/scMulan 2026-06-12T20:50:27,341 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-06-12T20:50:27,343 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-06-12T20:50:27,346 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-06-12T20:50:27,349 creating build/lib/omicverse/external/nocd/metrics 2026-06-12T20:50:27,350 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-06-12T20:50:27,353 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-06-12T20:50:27,355 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-06-12T20:50:27,357 creating build/lib/omicverse/external/nocd/nn 2026-06-12T20:50:27,359 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-06-12T20:50:27,361 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-06-12T20:50:27,363 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-06-12T20:50:27,365 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-06-12T20:50:27,370 creating build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,371 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,374 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,377 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,380 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,382 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,385 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,388 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,391 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,393 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,396 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,399 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,401 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,404 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,407 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,409 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,412 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,414 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,417 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,420 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,422 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,425 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,428 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-12T20:50:27,431 creating build/lib/omicverse/external/datacollect/utils 2026-06-12T20:50:27,433 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-06-12T20:50:27,436 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-06-12T20:50:27,438 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-06-12T20:50:27,441 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-06-12T20:50:27,443 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-06-12T20:50:27,445 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-06-12T20:50:27,449 creating build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,450 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,453 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,456 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,459 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,461 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,464 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,467 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,469 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,472 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,474 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,477 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,480 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,482 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,485 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,488 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,491 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,493 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,496 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,499 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,502 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,504 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,507 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,510 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,512 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,515 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,518 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,520 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,523 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,526 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,529 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,531 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,534 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,536 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,539 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-06-12T20:50:27,542 creating build/lib/omicverse/external/datacollect/config 2026-06-12T20:50:27,544 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-06-12T20:50:27,546 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-06-12T20:50:27,549 creating build/lib/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:27,550 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:27,553 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:27,556 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:27,558 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:27,561 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:27,564 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:27,566 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:27,569 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:27,572 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:27,575 creating build/lib/omicverse/external/datacollect/api/genomics 2026-06-12T20:50:27,577 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-12T20:50:27,580 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-12T20:50:27,582 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-12T20:50:27,585 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-12T20:50:27,588 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-12T20:50:27,590 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-12T20:50:27,592 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-12T20:50:27,595 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-12T20:50:27,597 creating build/lib/omicverse/external/datacollect/api/pathways 2026-06-12T20:50:27,598 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-12T20:50:27,601 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-12T20:50:27,603 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-12T20:50:27,605 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-12T20:50:27,608 creating build/lib/omicverse/external/datacollect/api/expression 2026-06-12T20:50:27,608 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-12T20:50:27,611 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-12T20:50:27,613 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-12T20:50:27,616 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-12T20:50:27,617 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-12T20:50:27,619 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-12T20:50:27,622 creating build/lib/omicverse/external/datacollect/api/proteins 2026-06-12T20:50:27,623 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-12T20:50:27,626 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-12T20:50:27,628 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-12T20:50:27,630 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-12T20:50:27,632 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-12T20:50:27,634 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-12T20:50:27,636 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-12T20:50:27,639 creating build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,640 copying omicverse/external/scTenifold/core/_utils.py -> build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,642 copying omicverse/external/scTenifold/core/_decomposition.py -> build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,644 copying omicverse/external/scTenifold/core/_api.py -> build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,646 copying omicverse/external/scTenifold/core/_norm.py -> build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,648 copying omicverse/external/scTenifold/core/_QC.py -> build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,650 copying omicverse/external/scTenifold/core/_networks.py -> build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,652 copying omicverse/external/scTenifold/core/_types.py -> build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,654 copying omicverse/external/scTenifold/core/_base.py -> build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,657 copying omicverse/external/scTenifold/core/__init__.py -> build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,659 copying omicverse/external/scTenifold/core/_ko.py -> build/lib/omicverse/external/scTenifold/core 2026-06-12T20:50:27,661 creating build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-12T20:50:27,662 copying omicverse/external/scTenifold/cell_cycle/UCell.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-12T20:50:27,663 copying omicverse/external/scTenifold/cell_cycle/__init__.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-12T20:50:27,665 copying omicverse/external/scTenifold/cell_cycle/scoring.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-12T20:50:27,667 creating build/lib/omicverse/external/scTenifold/data 2026-06-12T20:50:27,668 copying omicverse/external/scTenifold/data/_get.py -> build/lib/omicverse/external/scTenifold/data 2026-06-12T20:50:27,670 copying omicverse/external/scTenifold/data/__init__.py -> build/lib/omicverse/external/scTenifold/data 2026-06-12T20:50:27,672 copying omicverse/external/scTenifold/data/_io.py -> build/lib/omicverse/external/scTenifold/data 2026-06-12T20:50:27,674 copying omicverse/external/scTenifold/data/_sim.py -> build/lib/omicverse/external/scTenifold/data 2026-06-12T20:50:27,677 creating build/lib/omicverse/external/scTenifold/plotting 2026-06-12T20:50:27,678 copying omicverse/external/scTenifold/plotting/_dim_reduction.py -> build/lib/omicverse/external/scTenifold/plotting 2026-06-12T20:50:27,680 copying omicverse/external/scTenifold/plotting/_plotting.py -> build/lib/omicverse/external/scTenifold/plotting 2026-06-12T20:50:27,682 copying omicverse/external/scTenifold/plotting/__init__.py -> build/lib/omicverse/external/scTenifold/plotting 2026-06-12T20:50:27,684 creating build/lib/omicverse/external/STT/tl 2026-06-12T20:50:27,685 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-06-12T20:50:27,688 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-06-12T20:50:27,690 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-06-12T20:50:27,692 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-06-12T20:50:27,694 creating build/lib/omicverse/external/STT/pl 2026-06-12T20:50:27,695 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-06-12T20:50:27,697 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-06-12T20:50:27,700 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-06-12T20:50:27,702 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-06-12T20:50:27,705 creating build/lib/omicverse/external/space/cell2location 2026-06-12T20:50:27,706 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-06-12T20:50:27,709 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-06-12T20:50:27,711 creating build/lib/omicverse/external/space/cell2location/plt 2026-06-12T20:50:27,712 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-12T20:50:27,715 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-12T20:50:27,718 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-12T20:50:27,719 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-12T20:50:27,722 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-12T20:50:27,724 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-12T20:50:27,725 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-12T20:50:27,728 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-12T20:50:27,730 creating build/lib/omicverse/external/space/cell2location/models 2026-06-12T20:50:27,731 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-12T20:50:27,734 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-12T20:50:27,736 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-12T20:50:27,739 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-12T20:50:27,741 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-12T20:50:27,744 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-12T20:50:27,745 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-12T20:50:27,747 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-12T20:50:27,749 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-12T20:50:27,750 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-12T20:50:27,753 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-06-12T20:50:27,754 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-06-12T20:50:27,757 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-06-12T20:50:27,759 creating build/lib/omicverse/external/space/cell2location/utils 2026-06-12T20:50:27,760 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-06-12T20:50:27,762 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-06-12T20:50:27,764 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-06-12T20:50:27,766 creating build/lib/omicverse/external/space/cell2location/distributions 2026-06-12T20:50:27,767 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-12T20:50:27,770 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-12T20:50:27,773 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-12T20:50:27,775 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-12T20:50:27,777 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-12T20:50:27,779 creating build/lib/omicverse/external/space/cell2location/nn 2026-06-12T20:50:27,781 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-06-12T20:50:27,783 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-06-12T20:50:27,785 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-06-12T20:50:27,788 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-12T20:50:27,789 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-12T20:50:27,791 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-12T20:50:27,793 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-12T20:50:27,796 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-06-12T20:50:27,797 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-06-12T20:50:27,799 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-06-12T20:50:27,801 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-06-12T20:50:27,804 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-12T20:50:27,805 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-12T20:50:27,807 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-12T20:50:27,809 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-12T20:50:27,812 creating build/lib/omicverse/external/space/cell2location/models/base 2026-06-12T20:50:27,813 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-12T20:50:27,815 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-12T20:50:27,817 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-12T20:50:27,819 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-12T20:50:27,822 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-12T20:50:27,825 creating build/lib/omicverse/external/single/arboreto 2026-06-12T20:50:27,827 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-06-12T20:50:27,829 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-06-12T20:50:27,831 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-06-12T20:50:27,834 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-06-12T20:50:27,836 creating build/lib/omicverse/external/mofapy2/core 2026-06-12T20:50:27,837 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-06-12T20:50:27,839 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-06-12T20:50:27,841 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-06-12T20:50:27,843 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-06-12T20:50:27,845 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-06-12T20:50:27,848 creating build/lib/omicverse/external/mofapy2/run 2026-06-12T20:50:27,849 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-06-12T20:50:27,850 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-06-12T20:50:27,855 creating build/lib/omicverse/external/mofapy2/simulate 2026-06-12T20:50:27,856 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-06-12T20:50:27,858 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-06-12T20:50:27,860 creating build/lib/omicverse/external/mofapy2/build_model 2026-06-12T20:50:27,861 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-12T20:50:27,863 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-12T20:50:27,866 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-12T20:50:27,867 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-12T20:50:27,870 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-12T20:50:27,873 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-12T20:50:27,875 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,877 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,879 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,882 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,884 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,886 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,888 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,890 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,892 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,894 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,897 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,899 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:27,901 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,903 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,905 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,908 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,909 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,912 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,914 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,916 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,918 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,920 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,923 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,925 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,928 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,930 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,933 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,935 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,937 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,939 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,942 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:27,946 creating build/lib/omicverse/external/latentvelo/models 2026-06-12T20:50:27,948 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-12T20:50:27,951 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-06-12T20:50:27,953 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-06-12T20:50:27,955 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-12T20:50:27,958 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-12T20:50:27,962 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-06-12T20:50:27,964 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-12T20:50:27,967 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-06-12T20:50:27,970 creating build/lib/omicverse/external/latentvelo/tools 2026-06-12T20:50:27,971 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-12T20:50:27,973 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-12T20:50:27,975 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-12T20:50:27,977 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-12T20:50:27,978 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-12T20:50:27,981 creating build/lib/omicverse/external/latentvelo/evaluation 2026-06-12T20:50:27,982 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-06-12T20:50:27,984 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-06-12T20:50:27,986 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-06-12T20:50:27,989 creating build/lib/omicverse/external/latentvelo/plotting 2026-06-12T20:50:27,990 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-06-12T20:50:27,993 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-06-12T20:50:27,994 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-06-12T20:50:27,997 creating build/lib/omicverse/external/spaco/external 2026-06-12T20:50:27,999 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-06-12T20:50:28,002 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-06-12T20:50:28,004 creating build/lib/omicverse/external/CEFCON/resources 2026-06-12T20:50:28,005 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-06-12T20:50:28,007 creating build/lib/omicverse/external/flowsig/preprocessing 2026-06-12T20:50:28,009 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-12T20:50:28,011 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-12T20:50:28,013 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-12T20:50:28,016 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-12T20:50:28,018 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-12T20:50:28,020 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-12T20:50:28,023 creating build/lib/omicverse/external/flowsig/tools 2026-06-12T20:50:28,024 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-06-12T20:50:28,027 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-06-12T20:50:28,030 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-06-12T20:50:28,032 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-06-12T20:50:28,034 creating build/lib/omicverse/external/flowsig/utilities 2026-06-12T20:50:28,035 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-06-12T20:50:28,038 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-06-12T20:50:28,040 creating build/lib/omicverse/external/flowsig/plotting 2026-06-12T20:50:28,041 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-06-12T20:50:28,044 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-06-12T20:50:28,047 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,048 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,050 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,052 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,054 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,056 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,058 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,061 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,064 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,066 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,068 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,070 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,072 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,074 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,076 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,078 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,080 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,083 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,085 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:28,088 creating build/lib/omicverse/external/scdiffusion/VAE 2026-06-12T20:50:28,089 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-06-12T20:50:28,091 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-06-12T20:50:28,093 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-06-12T20:50:28,096 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,097 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,099 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,102 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,104 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,107 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,109 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,111 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,114 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,117 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,119 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:28,123 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,124 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,126 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,129 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,130 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,133 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,135 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,137 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,139 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,141 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,143 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,145 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,148 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:28,150 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:28,151 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:28,153 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:28,156 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:28,158 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:28,160 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:28,163 creating build/lib/omicverse/external/gsmap/gnn 2026-06-12T20:50:28,164 copying omicverse/external/gsmap/gnn/adjacency_matrix.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-12T20:50:28,167 copying omicverse/external/gsmap/gnn/model.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-12T20:50:28,169 copying omicverse/external/gsmap/gnn/__init__.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-12T20:50:28,171 copying omicverse/external/gsmap/gnn/train.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-12T20:50:28,173 creating build/lib/omicverse/external/popv/hub 2026-06-12T20:50:28,174 copying omicverse/external/popv/hub/_get_metrics.py -> build/lib/omicverse/external/popv/hub 2026-06-12T20:50:28,176 copying omicverse/external/popv/hub/_model.py -> build/lib/omicverse/external/popv/hub 2026-06-12T20:50:28,179 copying omicverse/external/popv/hub/_template.py -> build/lib/omicverse/external/popv/hub 2026-06-12T20:50:28,181 copying omicverse/external/popv/hub/__init__.py -> build/lib/omicverse/external/popv/hub 2026-06-12T20:50:28,182 copying omicverse/external/popv/hub/_metadata.py -> build/lib/omicverse/external/popv/hub 2026-06-12T20:50:28,185 creating build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,186 copying omicverse/external/popv/algorithms/_svm.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,188 copying omicverse/external/popv/algorithms/_scvi.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,190 copying omicverse/external/popv/algorithms/_bbknn.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,193 copying omicverse/external/popv/algorithms/_celltypist.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,195 copying omicverse/external/popv/algorithms/_harmony.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,197 copying omicverse/external/popv/algorithms/_scanvi.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,199 copying omicverse/external/popv/algorithms/_rf.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,201 copying omicverse/external/popv/algorithms/_onclass.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,203 copying omicverse/external/popv/algorithms/__init__.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,205 copying omicverse/external/popv/algorithms/_xgboost.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,207 copying omicverse/external/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,209 copying omicverse/external/popv/algorithms/_scanorama.py -> build/lib/omicverse/external/popv/algorithms 2026-06-12T20:50:28,211 creating build/lib/omicverse/external/commot/preprocessing 2026-06-12T20:50:28,212 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-06-12T20:50:28,215 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-06-12T20:50:28,217 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-06-12T20:50:28,219 creating build/lib/omicverse/external/commot/_optimal_transport 2026-06-12T20:50:28,220 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-12T20:50:28,223 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-12T20:50:28,226 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-12T20:50:28,228 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-12T20:50:28,230 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-12T20:50:28,233 creating build/lib/omicverse/external/commot/tools 2026-06-12T20:50:28,234 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-06-12T20:50:28,237 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-06-12T20:50:28,239 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-06-12T20:50:28,243 creating build/lib/omicverse/external/commot/_utils 2026-06-12T20:50:28,244 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-06-12T20:50:28,247 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-06-12T20:50:28,249 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-06-12T20:50:28,252 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-06-12T20:50:28,254 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-06-12T20:50:28,256 creating build/lib/omicverse/external/commot/plotting 2026-06-12T20:50:28,257 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-06-12T20:50:28,260 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-06-12T20:50:28,262 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-06-12T20:50:28,267 creating build/lib/omicverse/external/CAST/model 2026-06-12T20:50:28,268 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-06-12T20:50:28,270 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-06-12T20:50:28,272 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-06-12T20:50:28,274 creating build/lib/omicverse/external/scSLAT/model 2026-06-12T20:50:28,276 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-06-12T20:50:28,278 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-06-12T20:50:28,280 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-06-12T20:50:28,282 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-06-12T20:50:28,284 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-06-12T20:50:28,286 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-06-12T20:50:28,288 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-06-12T20:50:28,291 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-06-12T20:50:28,293 creating build/lib/omicverse/external/scSLAT/viz 2026-06-12T20:50:28,294 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-06-12T20:50:28,296 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-06-12T20:50:28,299 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-06-12T20:50:28,302 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-06-12T20:50:28,303 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-06-12T20:50:28,305 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-06-12T20:50:28,307 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-06-12T20:50:28,310 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-06-12T20:50:28,311 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-06-12T20:50:28,314 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-06-12T20:50:28,316 creating build/lib/omicverse/external/scMulan/model 2026-06-12T20:50:28,317 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-06-12T20:50:28,320 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-06-12T20:50:28,322 creating build/lib/omicverse/external/scMulan/utils 2026-06-12T20:50:28,323 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-06-12T20:50:28,326 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-06-12T20:50:28,328 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-12T20:50:28,330 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-12T20:50:28,334 creating build/lib/omicverse/datasets/data_files 2026-06-12T20:50:28,335 copying omicverse/datasets/data_files/smoothDatakNN.py -> build/lib/omicverse/datasets/data_files 2026-06-12T20:50:28,339 creating build/lib/omicverse/pl/_data 2026-06-12T20:50:28,340 copying omicverse/pl/_data/generate_centromeres.py -> build/lib/omicverse/pl/_data 2026-06-12T20:50:28,343 creating build/lib/omicverse/utils/harness 2026-06-12T20:50:28,345 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-06-12T20:50:28,349 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-06-12T20:50:28,353 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-06-12T20:50:28,356 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-06-12T20:50:28,361 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-06-12T20:50:28,364 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-06-12T20:50:28,367 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-06-12T20:50:28,371 creating build/lib/omicverse/utils/biocontext 2026-06-12T20:50:28,372 copying omicverse/utils/biocontext/_tools.py -> build/lib/omicverse/utils/biocontext 2026-06-12T20:50:28,375 copying omicverse/utils/biocontext/_client.py -> build/lib/omicverse/utils/biocontext 2026-06-12T20:50:28,378 copying omicverse/utils/biocontext/__init__.py -> build/lib/omicverse/utils/biocontext 2026-06-12T20:50:28,381 creating build/lib/omicverse/utils/gpuex 2026-06-12T20:50:28,382 copying omicverse/utils/gpuex/__init__.py -> build/lib/omicverse/utils/gpuex 2026-06-12T20:50:28,384 copying omicverse/utils/gpuex/scipy.py -> build/lib/omicverse/utils/gpuex 2026-06-12T20:50:28,388 creating build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,390 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,393 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,396 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,400 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,403 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,406 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,409 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,498 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,501 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,504 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,507 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,510 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,513 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-06-12T20:50:28,516 creating build/lib/omicverse/utils/verifier 2026-06-12T20:50:28,518 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-06-12T20:50:28,520 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-06-12T20:50:28,523 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-06-12T20:50:28,526 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-06-12T20:50:28,529 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-06-12T20:50:28,532 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-06-12T20:50:28,534 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-06-12T20:50:28,537 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-06-12T20:50:28,540 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-06-12T20:50:28,544 creating build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,545 copying omicverse/utils/ovagent/permission_policy.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,548 copying omicverse/utils/ovagent/session_facade.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,551 copying omicverse/utils/ovagent/tool_runtime_exec.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,555 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,558 copying omicverse/utils/ovagent/turn_artifacts.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,561 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,566 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,569 copying omicverse/utils/ovagent/context_budget.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,573 copying omicverse/utils/ovagent/event_stream.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,576 copying omicverse/utils/ovagent/tool_runtime_web.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,579 copying omicverse/utils/ovagent/prompt_templates.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,582 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,585 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,589 copying omicverse/utils/ovagent/tool_runtime_workspace.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,592 copying omicverse/utils/ovagent/tool_runtime_io.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,596 copying omicverse/utils/ovagent/analysis_sandbox.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,599 copying omicverse/utils/ovagent/analysis_diagnostics.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,603 copying omicverse/utils/ovagent/turn_followup.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,606 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,608 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,611 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,614 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,618 copying omicverse/utils/ovagent/tool_registry.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,621 copying omicverse/utils/ovagent/tool_scheduler.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,624 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,627 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,630 copying omicverse/utils/ovagent/codegen_tool_facade.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,633 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,636 copying omicverse/utils/ovagent/repair_loop.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,640 copying omicverse/utils/ovagent/analysis_transformer.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,643 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,647 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,650 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-06-12T20:50:28,654 creating build/lib/omicverse/utils/gpuex/umap 2026-06-12T20:50:28,655 copying omicverse/utils/gpuex/umap/_embedding.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-12T20:50:28,658 copying omicverse/utils/gpuex/umap/_sgd.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-12T20:50:28,661 copying omicverse/utils/gpuex/umap/_sgd_mlx.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-12T20:50:28,664 copying omicverse/utils/gpuex/umap/_ab.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-12T20:50:28,666 copying omicverse/utils/gpuex/umap/_init.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-12T20:50:28,669 copying omicverse/utils/gpuex/umap/__init__.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-12T20:50:28,672 creating build/lib/omicverse/pp/_scrublet_backend 2026-06-12T20:50:28,673 copying omicverse/pp/_scrublet_backend/scrublet.py -> build/lib/omicverse/pp/_scrublet_backend 2026-06-12T20:50:28,677 copying omicverse/pp/_scrublet_backend/__init__.py -> build/lib/omicverse/pp/_scrublet_backend 2026-06-12T20:50:28,679 copying omicverse/pp/_scrublet_backend/helper_functions.py -> build/lib/omicverse/pp/_scrublet_backend 2026-06-12T20:50:28,683 creating build/lib/omicverse/pp/ambient 2026-06-12T20:50:28,684 copying omicverse/pp/ambient/_plotting.py -> build/lib/omicverse/pp/ambient 2026-06-12T20:50:28,687 copying omicverse/pp/ambient/_diagnostics.py -> build/lib/omicverse/pp/ambient 2026-06-12T20:50:28,689 copying omicverse/pp/ambient/__init__.py -> build/lib/omicverse/pp/ambient 2026-06-12T20:50:28,692 copying omicverse/pp/ambient/_ambient.py -> build/lib/omicverse/pp/ambient 2026-06-12T20:50:28,695 creating build/lib/omicverse/pp/experimental 2026-06-12T20:50:28,696 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-06-12T20:50:28,699 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-06-12T20:50:28,703 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-06-12T20:50:28,706 creating build/lib/omicverse/io/spatial 2026-06-12T20:50:28,707 copying omicverse/io/spatial/_atera.py -> build/lib/omicverse/io/spatial 2026-06-12T20:50:28,711 copying omicverse/io/spatial/_xenium.py -> build/lib/omicverse/io/spatial 2026-06-12T20:50:28,714 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-06-12T20:50:28,717 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-06-12T20:50:28,720 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-06-12T20:50:28,723 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-06-12T20:50:28,727 creating build/lib/omicverse/io/bulk 2026-06-12T20:50:28,728 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-06-12T20:50:28,731 creating build/lib/omicverse/io/single 2026-06-12T20:50:28,732 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-06-12T20:50:28,735 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-06-12T20:50:28,738 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-06-12T20:50:28,741 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-06-12T20:50:28,744 creating build/lib/omicverse/io/general 2026-06-12T20:50:28,745 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-06-12T20:50:28,748 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-06-12T20:50:28,750 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-06-12T20:50:28,754 running egg_info 2026-06-12T20:50:28,767 writing omicverse.egg-info/PKG-INFO 2026-06-12T20:50:28,803 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-06-12T20:50:28,805 writing entry points to omicverse.egg-info/entry_points.txt 2026-06-12T20:50:28,825 writing requirements to omicverse.egg-info/requires.txt 2026-06-12T20:50:28,827 writing top-level names to omicverse.egg-info/top_level.txt 2026-06-12T20:50:29,049 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-12T20:50:29,141 reading manifest template 'MANIFEST.in' 2026-06-12T20:50:30,301 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-06-12T20:50:32,149 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-06-12T20:50:32,868 warning: no files found matching '*.yml' under directory 'omicverse' 2026-06-12T20:50:39,129 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-06-12T20:50:40,026 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-06-12T20:50:40,606 warning: no files found matching '*.svg' under directory 'omicverse' 2026-06-12T20:50:41,158 warning: no files found matching '*.ico' under directory 'omicverse' 2026-06-12T20:50:41,710 warning: no files found matching '*.db' under directory 'omicverse' 2026-06-12T20:50:42,256 warning: no files found matching '*.npz' under directory 'omicverse' 2026-06-12T20:50:42,820 warning: no files found matching '*.gz' under directory 'omicverse' 2026-06-12T20:50:42,824 no previously-included directories found matching '.git' 2026-06-12T20:50:42,829 no previously-included directories found matching '.github' 2026-06-12T20:50:42,833 no previously-included directories found matching '.claude' 2026-06-12T20:50:42,837 no previously-included directories found matching '.pytest_cache' 2026-06-12T20:50:42,842 no previously-included directories found matching '.ruff_cache' 2026-06-12T20:50:42,846 no previously-included directories found matching '.vscode' 2026-06-12T20:50:42,851 no previously-included directories found matching 'docs' 2026-06-12T20:50:42,855 no previously-included directories found matching 'tests' 2026-06-12T20:50:42,859 no previously-included directories found matching 'OvIntelligence' 2026-06-12T20:50:42,864 no previously-included directories found matching 'READMEM' 2026-06-12T20:50:42,869 no previously-included directories found matching 'omicverse_guide' 2026-06-12T20:50:42,873 no previously-included directories found matching 'omicverse_web' 2026-06-12T20:50:42,878 no previously-included directories found matching 'tmp' 2026-06-12T20:50:42,882 no previously-included directories found matching 'tmp_omicverse' 2026-06-12T20:50:42,886 no previously-included directories found matching 'Skill_Seekers' 2026-06-12T20:50:42,895 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-06-12T20:50:42,905 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-06-12T20:50:42,913 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-06-12T20:50:42,914 adding license file 'LICENSE' 2026-06-12T20:50:43,010 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-12T20:50:43,136 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-06-12T20:50:43,139 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-06-12T20:50:43,141 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-06-12T20:50:43,145 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-06-12T20:50:43,148 creating build/lib/omicverse/bulk/.ipynb_checkpoints 2026-06-12T20:50:43,149 copying omicverse/bulk/.ipynb_checkpoints/_wgcna-checkpoint.py -> build/lib/omicverse/bulk/.ipynb_checkpoints 2026-06-12T20:50:43,152 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-06-12T20:50:43,155 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-06-12T20:50:43,157 copying omicverse/pl/_data/centromere_hg19.csv -> build/lib/omicverse/pl/_data 2026-06-12T20:50:43,159 copying omicverse/pl/_data/centromere_mm10.csv -> build/lib/omicverse/pl/_data 2026-06-12T20:50:43,161 copying omicverse/pl/_data/centromere_hg38.csv -> build/lib/omicverse/pl/_data 2026-06-12T20:50:43,163 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-06-12T20:50:43,170 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-06-12T20:50:43,173 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-06-12T20:50:43,176 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-06-12T20:50:43,179 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-12T20:50:43,217 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-12T20:50:43,243 creating build/lib/omicverse/llm/scfoundation/models 2026-06-12T20:50:43,244 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-06-12T20:50:43,247 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-06-12T20:50:43,251 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-06-12T20:50:43,253 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-06-12T20:50:43,256 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-06-12T20:50:43,260 creating build/lib/omicverse/single/templates/img 2026-06-12T20:50:43,261 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-06-12T20:50:43,266 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-06-12T20:50:43,270 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-06-12T20:50:43,274 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-06-12T20:50:43,277 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-06-12T20:50:43,280 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-06-12T20:50:43,283 copying omicverse/external/istar/NOTICE.md -> build/lib/omicverse/external/istar 2026-06-12T20:50:43,285 copying omicverse/external/istar/README.md -> build/lib/omicverse/external/istar 2026-06-12T20:50:43,288 copying omicverse/external/istar/requirements.txt -> build/lib/omicverse/external/istar 2026-06-12T20:50:43,290 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-06-12T20:50:43,292 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-06-12T20:50:43,294 creating build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-12T20:50:43,296 copying omicverse/external/mebocost/data/mebocost_db/mouse/metabolite_associated_gene_reaction_HMDB_summary_mouse.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-12T20:50:43,315 copying omicverse/external/mebocost/data/mebocost_db/mouse/mouse_met_sensor_update_Oct21_2025.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-12T20:50:43,320 creating build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-06-12T20:50:43,320 copying omicverse/external/mebocost/data/mebocost_db/human/human_met_sensor_update_Oct21_2025.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-06-12T20:50:43,324 copying omicverse/external/mebocost/data/mebocost_db/human/metabolite_associated_gene_reaction_HMDB_summary.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-06-12T20:50:43,354 creating build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-12T20:50:43,355 copying omicverse/external/mebocost/data/mebocost_db/common/hmdb_blood_metabolite_concentration.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-12T20:50:43,357 copying omicverse/external/mebocost/data/mebocost_db/common/human_mouse_homology_gene_pair.csv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-12T20:50:43,367 copying omicverse/external/mebocost/data/mebocost_db/common/metabolite_annotation_HMDB_summary.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-12T20:50:43,403 creating build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,407 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,410 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,413 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,415 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,418 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,422 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,425 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,428 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,433 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,438 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,442 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,445 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-06-12T20:50:43,449 creating build/lib/omicverse/external/scfea/data 2026-06-12T20:50:43,450 copying omicverse/external/scfea/data/Human_M168_information.symbols.csv -> build/lib/omicverse/external/scfea/data 2026-06-12T20:50:43,453 copying omicverse/external/scfea/data/cName_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-12T20:50:43,456 copying omicverse/external/scfea/data/cName_complete_mouse_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-12T20:50:43,458 copying omicverse/external/scfea/data/cmMat_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-12T20:50:43,462 copying omicverse/external/scfea/data/cmMat_complete_mouse_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-12T20:50:43,465 copying omicverse/external/scfea/data/module_gene_complete_mouse_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-12T20:50:43,468 copying omicverse/external/scfea/data/module_gene_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-12T20:50:43,471 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-06-12T20:50:43,474 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-06-12T20:50:43,475 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-06-12T20:50:43,486 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-06-12T20:50:43,497 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-06-12T20:50:43,509 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-12T20:50:43,510 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-12T20:50:43,541 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-12T20:50:43,561 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-12T20:50:43,586 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-12T20:50:43,589 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-12T20:50:43,592 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-12T20:50:43,595 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-12T20:50:43,598 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:43,605 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-12T20:50:43,606 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-12T20:50:43,705 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-12T20:50:43,710 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-12T20:50:43,716 creating build/lib/omicverse/external/gsmap/templates 2026-06-12T20:50:43,718 copying omicverse/external/gsmap/templates/report_template.html -> build/lib/omicverse/external/gsmap/templates 2026-06-12T20:50:43,721 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-12T20:50:43,723 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-12T20:50:43,727 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-12T20:50:43,731 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-12T20:50:43,732 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-12T20:50:43,737 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-12T20:50:43,741 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-12T20:50:43,746 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-12T20:50:44,281 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-12T20:50:44,306 copying omicverse/datasets/data_files/README.md -> build/lib/omicverse/datasets/data_files 2026-06-12T20:50:44,308 copying omicverse/datasets/data_files/features_model_training_17.csv -> build/lib/omicverse/datasets/data_files 2026-06-12T20:50:44,313 copying omicverse/datasets/data_files/human_alias_list.txt -> build/lib/omicverse/datasets/data_files 2026-06-12T20:50:44,316 copying omicverse/datasets/data_files/mart_export.txt -> build/lib/omicverse/datasets/data_files 2026-06-12T20:50:44,389 creating build/lib/omicverse/datasets/data_files/TF 2026-06-12T20:50:44,390 copying omicverse/datasets/data_files/TF/allTFs_human.txt -> build/lib/omicverse/datasets/data_files/TF 2026-06-12T20:50:44,393 copying omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/datasets/data_files/TF 2026-06-12T20:50:44,396 copying omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/datasets/data_files/TF 2026-06-12T20:50:44,406 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/datasets/data_files/TF 2026-06-12T20:50:44,421 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/datasets/data_files/TF 2026-06-12T20:50:44,433 copying omicverse/pl/_data/README.md -> build/lib/omicverse/pl/_data 2026-06-12T20:50:44,437 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-06-12T20:50:44,565 installing to build/bdist.linux-armv7l/wheel 2026-06-12T20:50:44,565 running install 2026-06-12T20:50:44,589 running install_lib 2026-06-12T20:50:44,595 creating build/bdist.linux-armv7l/wheel 2026-06-12T20:50:44,597 creating build/bdist.linux-armv7l/wheel/omicverse 2026-06-12T20:50:44,599 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-06-12T20:50:44,601 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-06-12T20:50:44,602 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-06-12T20:50:44,604 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-06-12T20:50:44,606 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-06-12T20:50:44,608 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-06-12T20:50:44,611 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-06-12T20:50:44,612 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-12T20:50:44,614 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-12T20:50:44,615 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-12T20:50:44,617 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-12T20:50:44,620 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-12T20:50:44,622 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-06-12T20:50:44,624 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-12T20:50:44,625 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-12T20:50:44,628 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-12T20:50:44,631 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-12T20:50:44,633 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-12T20:50:44,635 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-12T20:50:44,637 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-06-12T20:50:44,638 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-06-12T20:50:44,641 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-06-12T20:50:44,643 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-12T20:50:44,645 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-06-12T20:50:44,646 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-12T20:50:44,649 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-12T20:50:44,665 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-12T20:50:44,695 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-12T20:50:44,697 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-12T20:50:44,699 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-12T20:50:44,701 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-12T20:50:44,704 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-12T20:50:44,706 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-12T20:50:44,708 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-06-12T20:50:44,710 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-06-12T20:50:44,711 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-06-12T20:50:44,713 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-06-12T20:50:44,715 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-06-12T20:50:44,716 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-06-12T20:50:44,718 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-06-12T20:50:44,720 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-06-12T20:50:44,721 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-06-12T20:50:44,723 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-06-12T20:50:44,726 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-06-12T20:50:44,728 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-06-12T20:50:44,729 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-12T20:50:44,731 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-12T20:50:44,733 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-12T20:50:44,735 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-12T20:50:44,737 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-06-12T20:50:44,738 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-12T20:50:44,740 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-12T20:50:44,742 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-12T20:50:44,744 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-12T20:50:44,747 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-12T20:50:44,749 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:44,750 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:44,752 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:44,754 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:44,756 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:44,759 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-12T20:50:44,761 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-06-12T20:50:44,763 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-06-12T20:50:44,765 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-06-12T20:50:44,766 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-06-12T20:50:44,769 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-06-12T20:50:44,770 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-12T20:50:44,772 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-12T20:50:44,775 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-12T20:50:44,777 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-12T20:50:44,779 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-12T20:50:44,781 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-12T20:50:44,783 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-06-12T20:50:44,785 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-06-12T20:50:44,787 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-06-12T20:50:44,789 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-06-12T20:50:44,791 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-06-12T20:50:44,792 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-06-12T20:50:44,794 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-06-12T20:50:44,796 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-06-12T20:50:44,798 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:44,800 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-06-12T20:50:44,801 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-12T20:50:44,804 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-12T20:50:44,807 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-06-12T20:50:44,808 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-06-12T20:50:44,810 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-12T20:50:44,813 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:44,814 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:44,816 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:44,817 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:44,820 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:44,822 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:44,824 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:44,826 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-12T20:50:44,828 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-12T20:50:44,830 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-12T20:50:44,832 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-12T20:50:44,834 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-12T20:50:44,840 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-12T20:50:44,842 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:44,848 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-06-12T20:50:44,849 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-06-12T20:50:44,851 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-06-12T20:50:44,853 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-06-12T20:50:44,855 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-12T20:50:44,858 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-06-12T20:50:44,859 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-06-12T20:50:44,861 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-06-12T20:50:44,863 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-06-12T20:50:44,865 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-12T20:50:44,867 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-06-12T20:50:44,868 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-12T20:50:44,870 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-12T20:50:44,872 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-12T20:50:44,874 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-12T20:50:44,876 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-12T20:50:44,879 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-06-12T20:50:44,880 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-06-12T20:50:44,882 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-06-12T20:50:44,883 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-06-12T20:50:44,885 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-12T20:50:44,887 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-12T20:50:44,889 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-12T20:50:44,892 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-06-12T20:50:44,893 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-06-12T20:50:44,895 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-12T20:50:44,897 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:44,899 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-06-12T20:50:44,900 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,904 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,906 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,909 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,911 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,914 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,916 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,920 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,922 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,924 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,927 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-06-12T20:50:44,928 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-12T20:50:44,930 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-12T20:50:44,932 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-12T20:50:44,934 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-12T20:50:44,936 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-12T20:50:44,937 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-12T20:50:44,940 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-12T20:50:44,942 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,945 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-12T20:50:44,948 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:44,950 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:44,954 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-06-12T20:50:44,956 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-06-12T20:50:44,958 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-06-12T20:50:44,960 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-06-12T20:50:44,963 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-06-12T20:50:44,964 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-06-12T20:50:44,966 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-12T20:50:44,968 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-12T20:50:44,971 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-12T20:50:44,973 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-12T20:50:44,975 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-12T20:50:44,977 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-12T20:50:44,980 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-12T20:50:44,982 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-12T20:50:44,984 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-12T20:50:44,986 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-12T20:50:44,988 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-12T20:50:44,990 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:44,992 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:44,994 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:44,998 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:45,000 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:45,003 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:45,008 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-06-12T20:50:45,009 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-06-12T20:50:45,010 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-06-12T20:50:45,013 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-06-12T20:50:45,014 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-06-12T20:50:45,015 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-06-12T20:50:45,017 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-12T20:50:45,022 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-12T20:50:45,025 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-12T20:50:45,028 creating build/bdist.linux-armv7l/wheel/omicverse/airr 2026-06-12T20:50:45,029 copying build/lib/omicverse/airr/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-12T20:50:45,032 copying build/lib/omicverse/airr/_tcr_gex.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-12T20:50:45,035 copying build/lib/omicverse/airr/_clonotype.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-12T20:50:45,038 copying build/lib/omicverse/airr/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-12T20:50:45,040 copying build/lib/omicverse/airr/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-12T20:50:45,043 copying build/lib/omicverse/airr/_tcr.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-12T20:50:45,046 copying build/lib/omicverse/airr/_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-12T20:50:45,049 copying build/lib/omicverse/airr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-12T20:50:45,051 copying build/lib/omicverse/airr/_bcr.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-12T20:50:45,055 copying build/lib/omicverse/airr/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-12T20:50:45,058 creating build/bdist.linux-armv7l/wheel/omicverse/epi 2026-06-12T20:50:45,059 copying build/lib/omicverse/epi/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,062 copying build/lib/omicverse/epi/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,064 copying build/lib/omicverse/epi/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,067 copying build/lib/omicverse/epi/pp.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,070 copying build/lib/omicverse/epi/bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,072 copying build/lib/omicverse/epi/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,074 copying build/lib/omicverse/epi/upstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,077 copying build/lib/omicverse/epi/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,079 copying build/lib/omicverse/epi/single.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,081 copying build/lib/omicverse/epi/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,083 copying build/lib/omicverse/epi/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,086 copying build/lib/omicverse/epi/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-12T20:50:45,089 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-06-12T20:50:45,090 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,092 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,095 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,097 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,101 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-06-12T20:50:45,103 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-06-12T20:50:45,106 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-06-12T20:50:45,108 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,111 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,114 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,118 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,121 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,125 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,128 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,132 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,135 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,141 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,144 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,148 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-06-12T20:50:45,150 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-06-12T20:50:45,153 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-06-12T20:50:45,156 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-06-12T20:50:45,160 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-06-12T20:50:45,162 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-12T20:50:45,166 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-12T20:50:45,170 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-12T20:50:45,175 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-12T20:50:45,179 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-12T20:50:45,182 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-12T20:50:45,187 copying build/lib/omicverse/jarvis/channels/channel_core.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-12T20:50:45,190 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-12T20:50:45,195 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,199 copying build/lib/omicverse/jarvis/gemini_cli_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,203 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-06-12T20:50:45,205 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-12T20:50:45,208 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-12T20:50:45,211 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-12T20:50:45,214 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-12T20:50:45,217 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-12T20:50:45,220 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-12T20:50:45,223 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-12T20:50:45,226 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-12T20:50:45,229 copying build/lib/omicverse/_optional.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-12T20:50:45,233 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-06-12T20:50:45,235 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,239 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,243 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,247 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,251 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-06-12T20:50:45,253 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-12T20:50:45,256 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-12T20:50:45,259 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-12T20:50:45,261 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-12T20:50:45,263 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-12T20:50:45,266 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,269 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,271 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,273 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,276 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,278 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,281 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,284 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,286 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-12T20:50:45,290 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-12T20:50:45,294 copying build/lib/omicverse/_oom_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-12T20:50:45,297 creating build/bdist.linux-armv7l/wheel/omicverse/protein 2026-06-12T20:50:45,298 copying build/lib/omicverse/protein/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,301 copying build/lib/omicverse/protein/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,304 copying build/lib/omicverse/protein/_design.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,306 copying build/lib/omicverse/protein/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,309 copying build/lib/omicverse/protein/_impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,312 copying build/lib/omicverse/protein/_enrich.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,314 copying build/lib/omicverse/protein/_de.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,317 copying build/lib/omicverse/protein/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,320 copying build/lib/omicverse/protein/_simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,322 copying build/lib/omicverse/protein/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,325 copying build/lib/omicverse/protein/_summarize.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-12T20:50:45,328 creating build/bdist.linux-armv7l/wheel/omicverse/es 2026-06-12T20:50:45,329 copying build/lib/omicverse/es/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,331 copying build/lib/omicverse/es/_methods.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,333 copying build/lib/omicverse/es/_mdt.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,335 copying build/lib/omicverse/es/_consensus.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,337 copying build/lib/omicverse/es/_udt.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,340 copying build/lib/omicverse/es/_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,342 copying build/lib/omicverse/es/_gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,344 copying build/lib/omicverse/es/_ulm.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,347 copying build/lib/omicverse/es/_ucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,349 copying build/lib/omicverse/es/_odeps.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,351 copying build/lib/omicverse/es/_ora.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,353 copying build/lib/omicverse/es/_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,355 copying build/lib/omicverse/es/_decouple.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,357 copying build/lib/omicverse/es/_zscore.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,359 copying build/lib/omicverse/es/_pv.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,361 copying build/lib/omicverse/es/_mlm.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,363 copying build/lib/omicverse/es/_run.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,366 copying build/lib/omicverse/es/_gsva.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,369 copying build/lib/omicverse/es/_method.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,370 copying build/lib/omicverse/es/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,373 copying build/lib/omicverse/es/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,375 copying build/lib/omicverse/es/_datatype.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,376 copying build/lib/omicverse/es/_viper.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,379 copying build/lib/omicverse/es/_waggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,382 copying build/lib/omicverse/es/_query_set.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-12T20:50:45,385 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-06-12T20:50:45,387 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-06-12T20:50:45,391 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-06-12T20:50:45,392 copying build/lib/omicverse/bulk/_gsea_numpy.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,395 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,397 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,401 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,405 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-06-12T20:50:45,407 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-06-12T20:50:45,409 copying build/lib/omicverse/bulk/_ora.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,412 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,414 copying build/lib/omicverse/bulk/_enrich_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,417 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,420 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/.ipynb_checkpoints 2026-06-12T20:50:45,422 copying build/lib/omicverse/bulk/.ipynb_checkpoints/_wgcna-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/.ipynb_checkpoints 2026-06-12T20:50:45,425 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,441 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,444 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,448 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,451 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,454 copying build/lib/omicverse/bulk/_wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,456 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-12T20:50:45,460 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-06-12T20:50:45,461 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,464 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,466 creating build/bdist.linux-armv7l/wheel/omicverse/space/histo 2026-06-12T20:50:45,467 copying build/lib/omicverse/space/histo/_stpath.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-12T20:50:45,470 copying build/lib/omicverse/space/histo/_dispatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-12T20:50:45,472 copying build/lib/omicverse/space/histo/_embed.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-12T20:50:45,475 copying build/lib/omicverse/space/histo/_stflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-12T20:50:45,477 copying build/lib/omicverse/space/histo/_istar.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-12T20:50:45,480 copying build/lib/omicverse/space/histo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-12T20:50:45,482 copying build/lib/omicverse/space/histo/_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-12T20:50:45,485 copying build/lib/omicverse/space/histo/_hest_fm.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-12T20:50:45,488 copying build/lib/omicverse/space/histo/_demo.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-12T20:50:45,490 copying build/lib/omicverse/space/_split.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,493 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,499 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,504 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,510 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,515 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,518 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,523 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,527 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,530 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,533 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,536 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,540 copying build/lib/omicverse/space/_tissue_zones.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,544 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,547 copying build/lib/omicverse/space/_cellcharter.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-12T20:50:45,551 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-06-12T20:50:45,553 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,556 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,559 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,562 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,607 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,610 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,613 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,616 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,621 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,624 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,627 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,632 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,636 copying build/lib/omicverse/single/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,640 copying build/lib/omicverse/single/_pseudobulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,643 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,647 copying build/lib/omicverse/single/_pseudotime_fate.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,699 copying build/lib/omicverse/single/_cnv.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,703 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,709 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,715 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,718 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,721 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,724 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,729 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,732 creating build/bdist.linux-armv7l/wheel/omicverse/single/_metacell_backends 2026-06-12T20:50:45,733 copying build/lib/omicverse/single/_metacell_backends/geosketch_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-12T20:50:45,736 copying build/lib/omicverse/single/_metacell_backends/metaq_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-12T20:50:45,738 copying build/lib/omicverse/single/_metacell_backends/mc2_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-12T20:50:45,740 copying build/lib/omicverse/single/_metacell_backends/supercell_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-12T20:50:45,743 copying build/lib/omicverse/single/_metacell_backends/kmeans_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-12T20:50:45,745 copying build/lib/omicverse/single/_metacell_backends/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-12T20:50:45,747 copying build/lib/omicverse/single/_metacell_backends/seacells_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-12T20:50:45,750 copying build/lib/omicverse/single/_metacell_backends/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-12T20:50:45,752 copying build/lib/omicverse/single/_metacell_backends/random_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-12T20:50:45,754 copying build/lib/omicverse/single/_dynamic_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,758 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,762 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,807 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,811 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,816 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,821 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,838 copying build/lib/omicverse/single/_stavia.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,841 copying build/lib/omicverse/single/_perturb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,891 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,894 copying build/lib/omicverse/single/_monocle.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,899 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,905 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,908 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,913 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,921 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,929 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,933 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,937 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,941 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,947 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,955 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,959 copying build/lib/omicverse/single/_comm.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,964 copying build/lib/omicverse/single/_nmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,970 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,977 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,990 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,994 copying build/lib/omicverse/single/_liana.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:45,998 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:46,003 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:46,007 copying build/lib/omicverse/single/_autoresolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:46,011 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:46,016 copying build/lib/omicverse/single/_augur.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:46,023 creating build/bdist.linux-armv7l/wheel/omicverse/single/ev 2026-06-12T20:50:46,025 copying build/lib/omicverse/single/ev/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,028 copying build/lib/omicverse/single/ev/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,030 copying build/lib/omicverse/single/ev/_pseudobulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,034 copying build/lib/omicverse/single/ev/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,038 copying build/lib/omicverse/single/ev/_coloc.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,043 copying build/lib/omicverse/single/ev/_annotate.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,048 copying build/lib/omicverse/single/ev/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,052 copying build/lib/omicverse/single/ev/_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,056 copying build/lib/omicverse/single/ev/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,059 copying build/lib/omicverse/single/ev/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,062 copying build/lib/omicverse/single/ev/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-12T20:50:46,065 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-12T20:50:46,068 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-06-12T20:50:46,069 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-12T20:50:46,071 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-12T20:50:46,073 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-12T20:50:46,076 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-06-12T20:50:46,078 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-12T20:50:46,081 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-12T20:50:46,085 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-12T20:50:46,089 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-12T20:50:46,091 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-12T20:50:46,093 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-12T20:50:46,096 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-12T20:50:46,100 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-06-12T20:50:46,101 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-06-12T20:50:46,103 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-12T20:50:46,105 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-12T20:50:46,107 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-12T20:50:46,110 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-12T20:50:46,112 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-12T20:50:46,116 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-12T20:50:46,337 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-12T20:50:46,341 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-06-12T20:50:46,342 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-12T20:50:46,344 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-06-12T20:50:46,345 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-06-12T20:50:46,347 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-06-12T20:50:46,349 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-06-12T20:50:46,351 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-12T20:50:46,353 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-12T20:50:46,355 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-12T20:50:46,357 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-06-12T20:50:46,358 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-12T20:50:46,360 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-12T20:50:46,362 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-12T20:50:46,364 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-12T20:50:46,366 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-12T20:50:46,368 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-12T20:50:46,371 creating build/bdist.linux-armv7l/wheel/omicverse/external/supercell 2026-06-12T20:50:46,372 copying build/lib/omicverse/external/supercell/supercell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/supercell 2026-06-12T20:50:46,374 copying build/lib/omicverse/external/supercell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/supercell 2026-06-12T20:50:46,377 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyensembl 2026-06-12T20:50:46,378 copying build/lib/omicverse/external/pyensembl/locus_with_genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,380 copying build/lib/omicverse/external/pyensembl/download_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,383 copying build/lib/omicverse/external/pyensembl/ensembl_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,385 copying build/lib/omicverse/external/pyensembl/exon.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,387 copying build/lib/omicverse/external/pyensembl/locus.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,389 copying build/lib/omicverse/external/pyensembl/ensembl_release.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,392 copying build/lib/omicverse/external/pyensembl/species.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,394 copying build/lib/omicverse/external/pyensembl/common.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,396 copying build/lib/omicverse/external/pyensembl/genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,399 copying build/lib/omicverse/external/pyensembl/gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,400 copying build/lib/omicverse/external/pyensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,402 copying build/lib/omicverse/external/pyensembl/fasta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,404 copying build/lib/omicverse/external/pyensembl/ensembl_url_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,407 copying build/lib/omicverse/external/pyensembl/transcript.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,409 copying build/lib/omicverse/external/pyensembl/reference_name.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,411 copying build/lib/omicverse/external/pyensembl/shell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,413 copying build/lib/omicverse/external/pyensembl/serializable.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,416 copying build/lib/omicverse/external/pyensembl/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,419 copying build/lib/omicverse/external/pyensembl/normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,421 copying build/lib/omicverse/external/pyensembl/search.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,422 copying build/lib/omicverse/external/pyensembl/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,424 copying build/lib/omicverse/external/pyensembl/sequence_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-12T20:50:46,427 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-06-12T20:50:46,428 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-06-12T20:50:46,431 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-06-12T20:50:46,433 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-06-12T20:50:46,436 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-06-12T20:50:46,437 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-12T20:50:46,440 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-12T20:50:46,443 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-12T20:50:46,445 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-12T20:50:46,448 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-12T20:50:46,450 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-12T20:50:46,453 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-12T20:50:46,455 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-12T20:50:46,458 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-12T20:50:46,461 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-06-12T20:50:46,462 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-06-12T20:50:46,465 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-06-12T20:50:46,467 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-06-12T20:50:46,469 creating build/bdist.linux-armv7l/wheel/omicverse/external/pylimma 2026-06-12T20:50:46,470 copying build/lib/omicverse/external/pylimma/fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pylimma 2026-06-12T20:50:46,474 copying build/lib/omicverse/external/pylimma/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pylimma 2026-06-12T20:50:46,476 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost 2026-06-12T20:50:46,477 copying build/lib/omicverse/external/mebocost/mebocost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-12T20:50:46,482 copying build/lib/omicverse/external/mebocost/crosstalk_diff.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-12T20:50:46,485 copying build/lib/omicverse/external/mebocost/crosstalk_plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-12T20:50:46,489 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data 2026-06-12T20:50:46,490 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db 2026-06-12T20:50:46,492 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-12T20:50:46,493 copying build/lib/omicverse/external/mebocost/data/mebocost_db/mouse/mouse_met_sensor_update_Oct21_2025.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-12T20:50:46,499 copying build/lib/omicverse/external/mebocost/data/mebocost_db/mouse/metabolite_associated_gene_reaction_HMDB_summary_mouse.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-12T20:50:46,533 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/human 2026-06-12T20:50:46,534 copying build/lib/omicverse/external/mebocost/data/mebocost_db/human/human_met_sensor_update_Oct21_2025.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/human 2026-06-12T20:50:46,541 copying build/lib/omicverse/external/mebocost/data/mebocost_db/human/metabolite_associated_gene_reaction_HMDB_summary.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/human 2026-06-12T20:50:46,561 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/common 2026-06-12T20:50:46,562 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/metabolite_annotation_HMDB_summary.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-06-12T20:50:46,585 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/hmdb_blood_metabolite_concentration.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-06-12T20:50:46,587 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/human_mouse_homology_gene_pair.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-06-12T20:50:46,594 copying build/lib/omicverse/external/mebocost/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-12T20:50:46,597 copying build/lib/omicverse/external/mebocost/crosstalk_calculator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-12T20:50:46,600 copying build/lib/omicverse/external/mebocost/fba_handler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-12T20:50:46,602 copying build/lib/omicverse/external/mebocost/MetEstimator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-12T20:50:46,605 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-06-12T20:50:46,606 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-06-12T20:50:46,607 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,610 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,612 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,615 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,617 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,620 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,622 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,624 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,627 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,629 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,632 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,634 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,636 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,639 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,642 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,644 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,647 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,649 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,651 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,653 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,656 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,658 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-12T20:50:46,661 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-06-12T20:50:46,662 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,664 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,666 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,668 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,671 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,673 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,676 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,678 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,680 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,682 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,685 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,687 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-12T20:50:46,690 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-12T20:50:46,692 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-12T20:50:46,695 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-12T20:50:46,697 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-06-12T20:50:46,698 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-12T20:50:46,701 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-12T20:50:46,703 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-12T20:50:46,705 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-12T20:50:46,707 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-12T20:50:46,709 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-12T20:50:46,711 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-12T20:50:46,713 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-12T20:50:46,717 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-06-12T20:50:46,718 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,720 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,723 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-06-12T20:50:46,724 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-12T20:50:46,726 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-12T20:50:46,728 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-12T20:50:46,731 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-12T20:50:46,733 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-12T20:50:46,735 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-12T20:50:46,737 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-12T20:50:46,739 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-12T20:50:46,742 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-12T20:50:46,744 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,747 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,749 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,752 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-06-12T20:50:46,753 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-12T20:50:46,756 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-12T20:50:46,758 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-12T20:50:46,760 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-12T20:50:46,763 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-12T20:50:46,765 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-12T20:50:46,767 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-12T20:50:46,770 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-12T20:50:46,774 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-06-12T20:50:46,775 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-12T20:50:46,778 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-12T20:50:46,782 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-12T20:50:46,785 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-12T20:50:46,788 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,791 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,793 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,796 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,799 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,802 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,805 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,807 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,810 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,813 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,816 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,819 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,822 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,825 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,828 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,831 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,834 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,837 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,839 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,842 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-06-12T20:50:46,843 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-12T20:50:46,847 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-12T20:50:46,850 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-12T20:50:46,854 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-12T20:50:46,856 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-12T20:50:46,858 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-12T20:50:46,861 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,865 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-06-12T20:50:46,866 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-12T20:50:46,869 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-12T20:50:46,872 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-12T20:50:46,874 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-12T20:50:46,877 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-12T20:50:46,879 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-12T20:50:46,882 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-12T20:50:46,885 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,887 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,890 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,893 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,896 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,898 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,901 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,903 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,906 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-12T20:50:46,909 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-06-12T20:50:46,910 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-06-12T20:50:46,913 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-06-12T20:50:46,915 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-06-12T20:50:46,916 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-12T20:50:46,919 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-12T20:50:46,922 copying build/lib/omicverse/external/umap_pytorch/fuzzy_gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-12T20:50:46,925 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-12T20:50:46,928 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-12T20:50:46,930 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-12T20:50:46,933 creating build/bdist.linux-armv7l/wheel/omicverse/external/py_scmetabolism 2026-06-12T20:50:46,934 copying build/lib/omicverse/external/py_scmetabolism/compute.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-12T20:50:46,937 copying build/lib/omicverse/external/py_scmetabolism/methods.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-12T20:50:46,940 copying build/lib/omicverse/external/py_scmetabolism/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-12T20:50:46,943 copying build/lib/omicverse/external/py_scmetabolism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-12T20:50:46,946 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-06-12T20:50:46,947 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-12T20:50:46,950 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-12T20:50:46,953 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-12T20:50:46,955 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-12T20:50:46,958 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-12T20:50:46,960 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-12T20:50:46,963 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-12T20:50:46,965 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold 2026-06-12T20:50:46,967 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/core 2026-06-12T20:50:46,968 copying build/lib/omicverse/external/scTenifold/core/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-12T20:50:46,970 copying build/lib/omicverse/external/scTenifold/core/_decomposition.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-12T20:50:46,971 copying build/lib/omicverse/external/scTenifold/core/_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-12T20:50:46,974 copying build/lib/omicverse/external/scTenifold/core/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-12T20:50:46,975 copying build/lib/omicverse/external/scTenifold/core/_QC.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-12T20:50:46,977 copying build/lib/omicverse/external/scTenifold/core/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-12T20:50:46,979 copying build/lib/omicverse/external/scTenifold/core/_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-12T20:50:46,981 copying build/lib/omicverse/external/scTenifold/core/_base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-12T20:50:46,984 copying build/lib/omicverse/external/scTenifold/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-12T20:50:46,986 copying build/lib/omicverse/external/scTenifold/core/_ko.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-12T20:50:46,988 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/cell_cycle 2026-06-12T20:50:46,989 copying build/lib/omicverse/external/scTenifold/cell_cycle/UCell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-06-12T20:50:46,991 copying build/lib/omicverse/external/scTenifold/cell_cycle/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-06-12T20:50:46,993 copying build/lib/omicverse/external/scTenifold/cell_cycle/scoring.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-06-12T20:50:46,995 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/data 2026-06-12T20:50:46,996 copying build/lib/omicverse/external/scTenifold/data/_get.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/data 2026-06-12T20:50:46,999 copying build/lib/omicverse/external/scTenifold/data/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/data 2026-06-12T20:50:47,000 copying build/lib/omicverse/external/scTenifold/data/_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/data 2026-06-12T20:50:47,002 copying build/lib/omicverse/external/scTenifold/data/_sim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/data 2026-06-12T20:50:47,005 copying build/lib/omicverse/external/scTenifold/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold 2026-06-12T20:50:47,007 copying build/lib/omicverse/external/scTenifold/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold 2026-06-12T20:50:47,009 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/plotting 2026-06-12T20:50:47,010 copying build/lib/omicverse/external/scTenifold/plotting/_dim_reduction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-06-12T20:50:47,012 copying build/lib/omicverse/external/scTenifold/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-06-12T20:50:47,014 copying build/lib/omicverse/external/scTenifold/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-06-12T20:50:47,017 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-06-12T20:50:47,018 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,020 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,022 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,024 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,027 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,029 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,031 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,033 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,035 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,037 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,039 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,041 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-12T20:50:47,044 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-06-12T20:50:47,045 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-12T20:50:47,047 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-12T20:50:47,049 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-12T20:50:47,051 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-12T20:50:47,053 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-12T20:50:47,055 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-12T20:50:47,058 creating build/bdist.linux-armv7l/wheel/omicverse/external/monocle2_py 2026-06-12T20:50:47,059 copying build/lib/omicverse/external/monocle2_py/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-12T20:50:47,062 copying build/lib/omicverse/external/monocle2_py/ddrtree.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-12T20:50:47,065 copying build/lib/omicverse/external/monocle2_py/clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-12T20:50:47,067 copying build/lib/omicverse/external/monocle2_py/ordering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-12T20:50:47,070 copying build/lib/omicverse/external/monocle2_py/differential.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-12T20:50:47,072 copying build/lib/omicverse/external/monocle2_py/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-12T20:50:47,075 copying build/lib/omicverse/external/monocle2_py/dimension_reduction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-12T20:50:47,077 copying build/lib/omicverse/external/monocle2_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-12T20:50:47,079 copying build/lib/omicverse/external/monocle2_py/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-12T20:50:47,081 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-06-12T20:50:47,082 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,085 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,088 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,090 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,092 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,095 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,096 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,098 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,100 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,102 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,105 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-12T20:50:47,108 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-06-12T20:50:47,109 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-06-12T20:50:47,111 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-06-12T20:50:47,113 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-06-12T20:50:47,116 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-06-12T20:50:47,117 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-06-12T20:50:47,120 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-06-12T20:50:47,122 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-06-12T20:50:47,124 creating build/bdist.linux-armv7l/wheel/omicverse/external/geosketch 2026-06-12T20:50:47,125 copying build/lib/omicverse/external/geosketch/sketch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-12T20:50:47,128 copying build/lib/omicverse/external/geosketch/kmeanspp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-12T20:50:47,130 copying build/lib/omicverse/external/geosketch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-12T20:50:47,132 copying build/lib/omicverse/external/geosketch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-12T20:50:47,134 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-06-12T20:50:47,135 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-12T20:50:47,141 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-12T20:50:47,144 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-12T20:50:47,148 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-12T20:50:47,154 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-12T20:50:47,159 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-12T20:50:47,161 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-12T20:50:47,162 copying build/lib/omicverse/external/torch_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-06-12T20:50:47,165 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-06-12T20:50:47,166 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-06-12T20:50:47,168 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-12T20:50:47,170 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-12T20:50:47,172 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-12T20:50:47,174 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-12T20:50:47,176 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-06-12T20:50:47,177 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-12T20:50:47,180 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-12T20:50:47,182 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-12T20:50:47,185 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-12T20:50:47,187 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-06-12T20:50:47,189 creating build/bdist.linux-armv7l/wheel/omicverse/external/scfea 2026-06-12T20:50:47,190 copying build/lib/omicverse/external/scfea/DatasetFlux.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-12T20:50:47,192 copying build/lib/omicverse/external/scfea/ClassFlux.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-12T20:50:47,194 creating build/bdist.linux-armv7l/wheel/omicverse/external/scfea/data 2026-06-12T20:50:47,195 copying build/lib/omicverse/external/scfea/data/Human_M168_information.symbols.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-12T20:50:47,199 copying build/lib/omicverse/external/scfea/data/module_gene_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-12T20:50:47,201 copying build/lib/omicverse/external/scfea/data/cName_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-12T20:50:47,203 copying build/lib/omicverse/external/scfea/data/cName_complete_mouse_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-12T20:50:47,205 copying build/lib/omicverse/external/scfea/data/cmMat_complete_mouse_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-12T20:50:47,208 copying build/lib/omicverse/external/scfea/data/cmMat_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-12T20:50:47,210 copying build/lib/omicverse/external/scfea/data/module_gene_complete_mouse_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-12T20:50:47,213 copying build/lib/omicverse/external/scfea/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-12T20:50:47,215 copying build/lib/omicverse/external/scfea/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-12T20:50:47,217 copying build/lib/omicverse/external/scfea/scFEA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-12T20:50:47,220 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-06-12T20:50:47,221 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-06-12T20:50:47,223 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-06-12T20:50:47,224 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-12T20:50:47,226 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-12T20:50:47,228 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-12T20:50:47,230 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-12T20:50:47,233 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-12T20:50:47,234 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-12T20:50:47,236 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-12T20:50:47,239 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-12T20:50:47,241 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-06-12T20:50:47,244 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-06-12T20:50:47,246 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-06-12T20:50:47,247 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-06-12T20:50:47,250 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-06-12T20:50:47,251 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-06-12T20:50:47,254 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-06-12T20:50:47,255 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-06-12T20:50:47,258 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-06-12T20:50:47,260 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-06-12T20:50:47,262 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-12T20:50:47,265 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-12T20:50:47,267 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-12T20:50:47,270 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-12T20:50:47,273 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-12T20:50:47,274 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-12T20:50:47,277 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-06-12T20:50:47,278 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-06-12T20:50:47,280 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-06-12T20:50:47,282 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-06-12T20:50:47,285 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-06-12T20:50:47,286 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-12T20:50:47,289 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-12T20:50:47,290 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-12T20:50:47,292 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-12T20:50:47,295 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-12T20:50:47,298 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-06-12T20:50:47,299 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-12T20:50:47,302 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-12T20:50:47,303 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-12T20:50:47,305 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-12T20:50:47,308 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-06-12T20:50:47,309 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-06-12T20:50:47,312 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-06-12T20:50:47,314 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-06-12T20:50:47,315 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-06-12T20:50:47,317 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-06-12T20:50:47,319 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-06-12T20:50:47,321 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-06-12T20:50:47,323 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-06-12T20:50:47,324 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-12T20:50:47,327 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-12T20:50:47,329 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-12T20:50:47,331 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-12T20:50:47,332 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-12T20:50:47,335 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-06-12T20:50:47,336 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-06-12T20:50:47,339 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-06-12T20:50:47,341 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-06-12T20:50:47,344 creating build/bdist.linux-armv7l/wheel/omicverse/external/istar 2026-06-12T20:50:47,345 copying build/lib/omicverse/external/istar/pixannot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,347 copying build/lib/omicverse/external/istar/cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,349 copying build/lib/omicverse/external/istar/connected_components.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,351 copying build/lib/omicverse/external/istar/plot_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,353 copying build/lib/omicverse/external/istar/enrich.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,355 copying build/lib/omicverse/external/istar/select_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,357 copying build/lib/omicverse/external/istar/vision_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,359 copying build/lib/omicverse/external/istar/aggregate_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,361 copying build/lib/omicverse/external/istar/reduce_dim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,362 copying build/lib/omicverse/external/istar/impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,365 copying build/lib/omicverse/external/istar/rescale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,367 copying build/lib/omicverse/external/istar/plot_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,368 copying build/lib/omicverse/external/istar/extract_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,371 copying build/lib/omicverse/external/istar/differential.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,373 copying build/lib/omicverse/external/istar/image.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,375 copying build/lib/omicverse/external/istar/vision_transformer4k.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,377 copying build/lib/omicverse/external/istar/structural_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,380 copying build/lib/omicverse/external/istar/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,382 copying build/lib/omicverse/external/istar/reorganize_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,383 copying build/lib/omicverse/external/istar/hipt_heatmap_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,386 copying build/lib/omicverse/external/istar/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,388 copying build/lib/omicverse/external/istar/impute_by_basic.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,390 copying build/lib/omicverse/external/istar/hipt_4k.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,392 copying build/lib/omicverse/external/istar/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,394 copying build/lib/omicverse/external/istar/marker_score.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,396 copying build/lib/omicverse/external/istar/visual.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,398 copying build/lib/omicverse/external/istar/get_mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,400 copying build/lib/omicverse/external/istar/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,402 copying build/lib/omicverse/external/istar/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,404 copying build/lib/omicverse/external/istar/requirements.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,405 copying build/lib/omicverse/external/istar/NOTICE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,407 copying build/lib/omicverse/external/istar/hipt_model_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-12T20:50:47,410 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-06-12T20:50:47,412 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-06-12T20:50:47,413 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-12T20:50:47,416 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-12T20:50:47,418 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-12T20:50:47,420 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-12T20:50:47,422 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-06-12T20:50:47,424 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-06-12T20:50:47,425 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-12T20:50:47,428 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-12T20:50:47,430 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,431 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,433 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,436 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,438 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,439 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,441 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,444 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,446 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,448 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,451 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,452 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-12T20:50:47,454 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-12T20:50:47,457 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,458 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,460 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,463 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,465 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,467 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,470 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,471 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,473 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,475 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,478 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,480 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,483 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,485 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,487 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,489 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,491 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,494 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,496 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-12T20:50:47,499 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-12T20:50:47,502 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-12T20:50:47,504 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-06-12T20:50:47,506 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-06-12T20:50:47,508 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-06-12T20:50:47,510 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-06-12T20:50:47,517 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-12T20:50:47,518 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-06-12T20:50:47,539 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-06-12T20:50:47,557 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-06-12T20:50:47,573 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-06-12T20:50:47,581 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-06-12T20:50:47,588 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-06-12T20:50:47,590 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-06-12T20:50:47,594 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-06-12T20:50:47,596 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-06-12T20:50:47,598 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-06-12T20:50:47,600 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-06-12T20:50:47,602 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-06-12T20:50:47,605 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-06-12T20:50:47,606 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-12T20:50:47,608 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-12T20:50:47,611 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-12T20:50:47,613 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-12T20:50:47,616 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-12T20:50:47,619 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-12T20:50:47,622 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-06-12T20:50:47,623 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,626 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,629 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-06-12T20:50:47,630 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-12T20:50:47,633 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-12T20:50:47,636 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-12T20:50:47,638 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-12T20:50:47,641 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-12T20:50:47,644 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-12T20:50:47,647 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-12T20:50:47,650 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-12T20:50:47,653 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,655 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,658 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,660 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,662 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,664 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,667 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-06-12T20:50:47,668 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-12T20:50:47,671 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-12T20:50:47,673 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-12T20:50:47,676 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-12T20:50:47,679 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-12T20:50:47,682 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-06-12T20:50:47,684 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-06-12T20:50:47,687 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-06-12T20:50:47,690 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-06-12T20:50:47,693 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,696 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,700 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,702 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,705 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,707 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,710 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,713 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,716 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,718 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,722 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,724 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,727 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-12T20:50:47,732 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-06-12T20:50:47,733 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-06-12T20:50:47,737 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-06-12T20:50:47,740 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-06-12T20:50:47,743 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-06-12T20:50:47,745 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-06-12T20:50:47,749 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-06-12T20:50:47,752 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-06-12T20:50:47,756 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-06-12T20:50:47,757 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-12T20:50:47,761 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-12T20:50:47,764 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-12T20:50:47,768 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-06-12T20:50:47,770 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-06-12T20:50:47,773 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-06-12T20:50:47,775 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-12T20:50:47,777 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-12T20:50:47,780 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-12T20:50:47,782 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-12T20:50:47,783 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-12T20:50:47,786 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-12T20:50:47,789 creating build/bdist.linux-armv7l/wheel/omicverse/external/MetaQ 2026-06-12T20:50:47,790 copying build/lib/omicverse/external/MetaQ/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-12T20:50:47,792 copying build/lib/omicverse/external/MetaQ/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-12T20:50:47,795 copying build/lib/omicverse/external/MetaQ/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-12T20:50:47,796 copying build/lib/omicverse/external/MetaQ/engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-12T20:50:47,799 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-06-12T20:50:47,800 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-12T20:50:47,803 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-12T20:50:47,805 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-12T20:50:47,808 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-12T20:50:47,810 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-12T20:50:47,812 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-12T20:50:47,814 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-12T20:50:47,817 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-12T20:50:47,820 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-06-12T20:50:47,821 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-12T20:50:47,823 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-12T20:50:47,826 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-12T20:50:47,828 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-12T20:50:47,830 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-12T20:50:47,832 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-12T20:50:47,835 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-06-12T20:50:47,836 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-12T20:50:47,838 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-12T20:50:47,840 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-12T20:50:47,843 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-12T20:50:47,845 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-12T20:50:47,847 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-12T20:50:47,851 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyedger 2026-06-12T20:50:47,852 copying build/lib/omicverse/external/pyedger/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyedger 2026-06-12T20:50:47,855 copying build/lib/omicverse/external/pyedger/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyedger 2026-06-12T20:50:47,858 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-06-12T20:50:47,859 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-12T20:50:47,862 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-12T20:50:47,865 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-12T20:50:47,868 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-12T20:50:47,870 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-12T20:50:47,873 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-12T20:50:47,874 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-12T20:50:47,877 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-12T20:50:47,879 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-12T20:50:47,882 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-06-12T20:50:47,884 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-06-12T20:50:47,885 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-12T20:50:47,887 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-12T20:50:47,890 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-12T20:50:47,892 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-12T20:50:47,894 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-12T20:50:47,896 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-12T20:50:47,900 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-06-12T20:50:47,901 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-12T20:50:47,903 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-12T20:50:47,906 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-12T20:50:47,908 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-12T20:50:47,910 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-06-12T20:50:47,912 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-06-12T20:50:47,913 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-06-12T20:50:47,915 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-06-12T20:50:47,918 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-06-12T20:50:47,919 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-06-12T20:50:47,924 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-06-12T20:50:47,927 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-06-12T20:50:47,928 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-12T20:50:47,931 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,932 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,934 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,936 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,939 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,941 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,943 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,947 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,949 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,951 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,953 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,955 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,958 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,960 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,962 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,964 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,967 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,969 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,971 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-12T20:50:47,974 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-12T20:50:47,976 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-12T20:50:47,980 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-06-12T20:50:47,981 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-06-12T20:50:47,984 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-06-12T20:50:47,986 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-06-12T20:50:47,988 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-12T20:50:47,991 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-06-12T20:50:47,992 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:47,995 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:47,997 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:48,000 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:48,002 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:48,005 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:48,007 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:48,009 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:48,011 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:48,013 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:48,015 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-12T20:50:48,019 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-06-12T20:50:48,020 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-12T20:50:48,023 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-12T20:50:48,025 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-12T20:50:48,027 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-12T20:50:48,031 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-06-12T20:50:48,033 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-12T20:50:48,035 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-12T20:50:48,037 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-12T20:50:48,039 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-12T20:50:48,042 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-12T20:50:48,045 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-06-12T20:50:48,046 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-06-12T20:50:48,049 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-06-12T20:50:48,052 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-06-12T20:50:48,053 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-12T20:50:48,056 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-12T20:50:48,058 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-12T20:50:48,060 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-12T20:50:48,062 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-12T20:50:48,065 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-12T20:50:48,068 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-06-12T20:50:48,069 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-12T20:50:48,071 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-12T20:50:48,073 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-12T20:50:48,075 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-12T20:50:48,078 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-12T20:50:48,081 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-06-12T20:50:48,082 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,083 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,086 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,089 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,091 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,094 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,097 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,099 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,102 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,108 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,111 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,114 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-12T20:50:48,118 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,120 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,122 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,125 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,127 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,130 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,132 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,135 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,137 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,139 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,141 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,144 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,146 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-12T20:50:48,149 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-06-12T20:50:48,150 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-06-12T20:50:48,157 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-06-12T20:50:48,163 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-06-12T20:50:48,255 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-06-12T20:50:48,257 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:48,258 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:48,260 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:48,262 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:48,265 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:48,267 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-12T20:50:48,270 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap 2026-06-12T20:50:48,271 copying build/lib/omicverse/external/gsmap/latent_to_gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,273 copying build/lib/omicverse/external/gsmap/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,275 copying build/lib/omicverse/external/gsmap/_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,278 copying build/lib/omicverse/external/gsmap/_manhattan_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,281 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap/gnn 2026-06-12T20:50:48,281 copying build/lib/omicverse/external/gsmap/gnn/adjacency_matrix.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-12T20:50:48,283 copying build/lib/omicverse/external/gsmap/gnn/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-12T20:50:48,286 copying build/lib/omicverse/external/gsmap/gnn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-12T20:50:48,288 copying build/lib/omicverse/external/gsmap/gnn/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-12T20:50:48,290 copying build/lib/omicverse/external/gsmap/cauchy_combination.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,292 copying build/lib/omicverse/external/gsmap/diagnosis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,294 copying build/lib/omicverse/external/gsmap/_visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,296 copying build/lib/omicverse/external/gsmap/spatial_ldsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,299 copying build/lib/omicverse/external/gsmap/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,300 copying build/lib/omicverse/external/gsmap/_regression_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,302 copying build/lib/omicverse/external/gsmap/_jackknife.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,304 copying build/lib/omicverse/external/gsmap/_style.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,306 copying build/lib/omicverse/external/gsmap/generate_ldscore.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,309 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap/templates 2026-06-12T20:50:48,310 copying build/lib/omicverse/external/gsmap/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/templates 2026-06-12T20:50:48,312 copying build/lib/omicverse/external/gsmap/find_latent_representation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-12T20:50:48,314 creating build/bdist.linux-armv7l/wheel/omicverse/external/mcRigor 2026-06-12T20:50:48,315 copying build/lib/omicverse/external/mcRigor/rigor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mcRigor 2026-06-12T20:50:48,318 copying build/lib/omicverse/external/mcRigor/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mcRigor 2026-06-12T20:50:48,320 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-06-12T20:50:48,321 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-06-12T20:50:48,325 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-06-12T20:50:48,327 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-06-12T20:50:48,330 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-06-12T20:50:48,330 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,333 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,334 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,336 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,339 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,341 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,342 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,344 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,346 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,348 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,349 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,351 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,353 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-12T20:50:48,356 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-06-12T20:50:48,357 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-12T20:50:48,359 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-12T20:50:48,361 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-12T20:50:48,367 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-12T20:50:48,369 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-12T20:50:48,372 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-06-12T20:50:48,373 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,375 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,377 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,379 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,381 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,384 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,385 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,387 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,389 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,390 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,392 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,394 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,396 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,398 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,400 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,401 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-12T20:50:48,404 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-06-12T20:50:48,405 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-12T20:50:48,408 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-12T20:50:48,410 copying build/lib/omicverse/external/harmony/_harmony_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-12T20:50:48,412 copying build/lib/omicverse/external/harmony/_harmony_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-12T20:50:48,414 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-12T20:50:48,417 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellcharter 2026-06-12T20:50:48,418 copying build/lib/omicverse/external/cellcharter/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-12T20:50:48,419 copying build/lib/omicverse/external/cellcharter/_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-12T20:50:48,421 copying build/lib/omicverse/external/cellcharter/_autok.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-12T20:50:48,423 copying build/lib/omicverse/external/cellcharter/_gmm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-12T20:50:48,426 copying build/lib/omicverse/external/cellcharter/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-12T20:50:48,427 copying build/lib/omicverse/external/cellcharter/_aggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-12T20:50:48,430 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-06-12T20:50:48,431 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-12T20:50:48,433 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-12T20:50:48,435 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-12T20:50:48,438 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-12T20:50:48,440 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-12T20:50:48,443 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-12T20:50:48,445 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-12T20:50:48,447 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-12T20:50:48,450 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-06-12T20:50:48,451 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-12T20:50:48,453 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-12T20:50:48,456 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-12T20:50:48,459 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-12T20:50:48,461 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-12T20:50:48,463 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-12T20:50:48,466 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-12T20:50:48,469 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-12T20:50:48,472 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv 2026-06-12T20:50:48,473 copying build/lib/omicverse/external/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-12T20:50:48,476 copying build/lib/omicverse/external/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-12T20:50:48,479 copying build/lib/omicverse/external/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-12T20:50:48,482 copying build/lib/omicverse/external/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-12T20:50:48,486 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/hub 2026-06-12T20:50:48,488 copying build/lib/omicverse/external/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-12T20:50:48,490 copying build/lib/omicverse/external/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-12T20:50:48,494 copying build/lib/omicverse/external/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-12T20:50:48,496 copying build/lib/omicverse/external/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-12T20:50:48,500 copying build/lib/omicverse/external/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-12T20:50:48,503 copying build/lib/omicverse/external/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-12T20:50:48,506 copying build/lib/omicverse/external/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-12T20:50:48,509 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/algorithms 2026-06-12T20:50:48,511 copying build/lib/omicverse/external/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,514 copying build/lib/omicverse/external/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,518 copying build/lib/omicverse/external/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,521 copying build/lib/omicverse/external/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,524 copying build/lib/omicverse/external/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,527 copying build/lib/omicverse/external/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,530 copying build/lib/omicverse/external/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,532 copying build/lib/omicverse/external/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,535 copying build/lib/omicverse/external/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,538 copying build/lib/omicverse/external/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,541 copying build/lib/omicverse/external/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,543 copying build/lib/omicverse/external/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-12T20:50:48,547 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-06-12T20:50:48,549 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,552 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,555 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,558 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,562 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,565 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,567 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,571 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,573 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,576 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,579 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,581 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,583 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,585 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,588 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-12T20:50:48,591 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-06-12T20:50:48,593 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-06-12T20:50:48,595 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-06-12T20:50:48,598 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-06-12T20:50:48,601 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-06-12T20:50:48,603 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-06-12T20:50:48,605 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-06-12T20:50:48,607 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-12T20:50:48,609 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-12T20:50:48,612 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-12T20:50:48,616 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-12T20:50:48,618 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-12T20:50:48,621 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-12T20:50:48,625 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-12T20:50:48,630 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-06-12T20:50:48,631 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-12T20:50:48,634 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-12T20:50:48,637 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-12T20:50:48,639 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-12T20:50:48,641 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-12T20:50:48,645 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-06-12T20:50:48,646 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-06-12T20:50:48,649 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-06-12T20:50:48,651 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-06-12T20:50:48,655 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-06-12T20:50:48,658 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-06-12T20:50:48,659 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-12T20:50:48,662 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-12T20:50:48,664 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-12T20:50:48,667 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-12T20:50:48,669 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-12T20:50:48,672 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-06-12T20:50:48,673 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-06-12T20:50:48,676 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-06-12T20:50:48,678 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-06-12T20:50:48,682 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-06-12T20:50:48,683 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-12T20:50:48,685 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-12T20:50:48,688 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-12T20:50:48,690 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-12T20:50:48,692 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-12T20:50:48,694 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-12T20:50:48,696 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-12T20:50:48,698 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-06-12T20:50:48,700 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-12T20:50:48,702 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-12T20:50:48,705 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-12T20:50:48,707 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-12T20:50:48,710 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-06-12T20:50:48,711 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-06-12T20:50:48,713 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-06-12T20:50:48,715 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-06-12T20:50:48,717 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-06-12T20:50:48,719 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-12T20:50:48,722 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-12T20:50:48,725 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-12T20:50:48,727 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-12T20:50:48,731 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-12T20:50:48,733 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-12T20:50:48,735 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-12T20:50:48,739 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-06-12T20:50:48,740 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-12T20:50:48,742 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-12T20:50:48,745 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-12T20:50:48,747 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-12T20:50:48,749 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-12T20:50:48,752 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-12T20:50:48,755 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-06-12T20:50:48,757 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-12T20:50:48,759 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-12T20:50:48,762 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-12T20:50:48,764 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-12T20:50:48,766 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-12T20:50:48,770 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-06-12T20:50:48,771 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-12T20:50:48,773 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-12T20:50:48,776 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-12T20:50:48,778 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-12T20:50:48,781 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-12T20:50:48,783 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-12T20:50:48,785 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-12T20:50:48,789 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-06-12T20:50:48,790 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-06-12T20:50:48,794 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-06-12T20:50:48,795 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-12T20:50:48,798 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-12T20:50:48,801 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-06-12T20:50:48,802 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-06-12T20:50:48,804 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-06-12T20:50:48,807 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-06-12T20:50:48,809 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-12T20:50:48,812 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-12T20:50:48,814 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-12T20:50:48,817 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-06-12T20:50:48,818 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-06-12T20:50:48,820 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-06-12T20:50:48,822 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-12T20:50:48,825 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-12T20:50:48,827 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-12T20:50:48,829 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-06-12T20:50:48,831 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-06-12T20:50:48,833 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-06-12T20:50:48,835 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-06-12T20:50:48,837 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-06-12T20:50:48,839 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-06-12T20:50:48,842 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-06-12T20:50:48,843 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-06-12T20:50:48,846 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-06-12T20:50:48,849 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-06-12T20:50:48,851 creating build/bdist.linux-armv7l/wheel/omicverse/external/gtfparse 2026-06-12T20:50:48,852 copying build/lib/omicverse/external/gtfparse/create_missing_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-12T20:50:48,855 copying build/lib/omicverse/external/gtfparse/attribute_parsing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-12T20:50:48,858 copying build/lib/omicverse/external/gtfparse/parsing_error.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-12T20:50:48,860 copying build/lib/omicverse/external/gtfparse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-12T20:50:48,862 copying build/lib/omicverse/external/gtfparse/read_gtf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-12T20:50:48,865 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-06-12T20:50:48,866 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-06-12T20:50:48,868 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-12T20:50:48,869 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-12T20:50:48,872 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-12T20:50:48,898 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-12T20:50:49,399 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-06-12T20:50:49,400 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-06-12T20:50:49,403 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-06-12T20:50:49,405 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-06-12T20:50:49,408 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-06-12T20:50:49,409 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-06-12T20:50:49,411 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-06-12T20:50:49,413 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-06-12T20:50:49,415 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-06-12T20:50:49,418 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-06-12T20:50:49,419 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-12T20:50:49,421 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-12T20:50:49,423 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-12T20:50:49,425 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-12T20:50:49,427 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-12T20:50:49,429 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-12T20:50:49,430 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-12T20:50:49,433 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-12T20:50:49,435 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-12T20:50:49,437 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-12T20:50:49,439 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-06-12T20:50:49,440 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,442 copying build/lib/omicverse/alignment/cutadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,444 copying build/lib/omicverse/alignment/mafft.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,446 copying build/lib/omicverse/alignment/dada2.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,448 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,450 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,453 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,455 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,457 copying build/lib/omicverse/alignment/simpleaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,460 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,463 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,465 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,467 copying build/lib/omicverse/alignment/amplicon_16s.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,469 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,471 copying build/lib/omicverse/alignment/vsearch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,474 copying build/lib/omicverse/alignment/fasttree.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,476 copying build/lib/omicverse/alignment/_db.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,478 copying build/lib/omicverse/alignment/phylogeny.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-12T20:50:49,481 creating build/bdist.linux-armv7l/wheel/omicverse/metabol 2026-06-12T20:50:49,482 copying build/lib/omicverse/metabol/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,485 copying build/lib/omicverse/metabol/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,486 copying build/lib/omicverse/metabol/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,488 copying build/lib/omicverse/metabol/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,491 copying build/lib/omicverse/metabol/_impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,493 copying build/lib/omicverse/metabol/_biomarker.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,495 copying build/lib/omicverse/metabol/_msea.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,498 copying build/lib/omicverse/metabol/_multifactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,500 copying build/lib/omicverse/metabol/_correlation.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,503 copying build/lib/omicverse/metabol/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,505 copying build/lib/omicverse/metabol/_integration.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,507 copying build/lib/omicverse/metabol/_id_mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,509 copying build/lib/omicverse/metabol/_fetchers.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,512 copying build/lib/omicverse/metabol/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,514 copying build/lib/omicverse/metabol/pymetabo.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,516 copying build/lib/omicverse/metabol/_mummichog.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,518 copying build/lib/omicverse/metabol/_lipidomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,521 copying build/lib/omicverse/metabol/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,523 copying build/lib/omicverse/metabol/_transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,525 copying build/lib/omicverse/metabol/_plsda.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,527 copying build/lib/omicverse/metabol/_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-12T20:50:49,529 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-12T20:50:49,532 creating build/bdist.linux-armv7l/wheel/omicverse/mol 2026-06-12T20:50:49,533 copying build/lib/omicverse/mol/_pocket.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-12T20:50:49,535 copying build/lib/omicverse/mol/_view.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-12T20:50:49,537 copying build/lib/omicverse/mol/_dock.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-12T20:50:49,540 copying build/lib/omicverse/mol/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-12T20:50:49,542 copying build/lib/omicverse/mol/_check.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-12T20:50:49,544 copying build/lib/omicverse/mol/_structure.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-12T20:50:49,546 copying build/lib/omicverse/mol/_drugs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-12T20:50:49,548 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-12T20:50:49,550 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-06-12T20:50:49,551 copying build/lib/omicverse/datasets/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-12T20:50:49,554 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-12T20:50:49,556 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files 2026-06-12T20:50:49,557 copying build/lib/omicverse/datasets/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-12T20:50:49,569 copying build/lib/omicverse/datasets/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-12T20:50:49,572 copying build/lib/omicverse/datasets/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-12T20:50:49,573 copying build/lib/omicverse/datasets/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-12T20:50:49,575 copying build/lib/omicverse/datasets/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-12T20:50:49,651 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files/TF 2026-06-12T20:50:49,652 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-12T20:50:49,666 copying build/lib/omicverse/datasets/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-12T20:50:49,668 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-12T20:50:49,679 copying build/lib/omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-12T20:50:49,689 copying build/lib/omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-12T20:50:49,691 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-12T20:50:49,694 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-12T20:50:49,696 copying build/lib/omicverse/datasets/_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-12T20:50:49,699 copying build/lib/omicverse/datasets/_ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-12T20:50:49,701 copying build/lib/omicverse/datasets/_timecourse.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-12T20:50:49,702 copying build/lib/omicverse/datasets/_airr.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-12T20:50:49,704 copying build/lib/omicverse/datasets/_ambient.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-12T20:50:49,706 copying build/lib/omicverse/datasets/_protein.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-12T20:50:49,709 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-06-12T20:50:49,710 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-12T20:50:49,713 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-12T20:50:49,716 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-12T20:50:49,718 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-12T20:50:49,720 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-12T20:50:49,722 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-12T20:50:49,725 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-12T20:50:49,728 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-12T20:50:49,731 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-12T20:50:49,734 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-12T20:50:49,736 creating build/bdist.linux-armv7l/wheel/omicverse/report 2026-06-12T20:50:49,737 copying build/lib/omicverse/report/_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-12T20:50:49,739 copying build/lib/omicverse/report/_html.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-12T20:50:49,742 copying build/lib/omicverse/report/_plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-12T20:50:49,744 copying build/lib/omicverse/report/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-12T20:50:49,747 copying build/lib/omicverse/report/_provenance.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-12T20:50:49,750 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-06-12T20:50:49,752 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,754 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,757 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,761 copying build/lib/omicverse/pl/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,764 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,770 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,772 copying build/lib/omicverse/pl/_cnv.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,774 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,777 copying build/lib/omicverse/pl/_funkyheatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,779 copying build/lib/omicverse/pl/_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,781 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,784 copying build/lib/omicverse/pl/_plot1cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,786 copying build/lib/omicverse/pl/_dynamic_trends.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,789 copying build/lib/omicverse/pl/_trajectory.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,792 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,795 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,798 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,801 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,803 copying build/lib/omicverse/pl/_scatterplot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,806 copying build/lib/omicverse/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,814 copying build/lib/omicverse/pl/_venn_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,817 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,819 copying build/lib/omicverse/pl/_upset.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,821 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,823 copying build/lib/omicverse/pl/_branch_streamplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,826 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,830 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,832 copying build/lib/omicverse/pl/_scanpy_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,834 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,837 copying build/lib/omicverse/pl/_plot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,840 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,843 copying build/lib/omicverse/pl/_heatmap_marsilea.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,847 copying build/lib/omicverse/pl/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,850 copying build/lib/omicverse/pl/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,852 copying build/lib/omicverse/pl/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,855 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,857 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,861 creating build/bdist.linux-armv7l/wheel/omicverse/pl/_data 2026-06-12T20:50:49,862 copying build/lib/omicverse/pl/_data/centromere_hg19.csv -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-06-12T20:50:49,865 copying build/lib/omicverse/pl/_data/generate_centromeres.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-06-12T20:50:49,867 copying build/lib/omicverse/pl/_data/centromere_mm10.csv -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-06-12T20:50:49,869 copying build/lib/omicverse/pl/_data/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-06-12T20:50:49,871 copying build/lib/omicverse/pl/_data/centromere_hg38.csv -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-06-12T20:50:49,873 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,879 copying build/lib/omicverse/pl/_perturbation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-12T20:50:49,884 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-06-12T20:50:49,886 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-06-12T20:50:49,887 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-12T20:50:49,890 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-12T20:50:49,893 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-12T20:50:49,895 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-12T20:50:49,898 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-12T20:50:49,901 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-12T20:50:49,903 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-12T20:50:49,905 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,908 copying build/lib/omicverse/utils/agent_backend_streaming.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,911 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,914 copying build/lib/omicverse/utils/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,916 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,919 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,922 copying build/lib/omicverse/utils/agent_backend_openai.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,926 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,929 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,932 copying build/lib/omicverse/utils/agent_backend_anthropic.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,935 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,938 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,940 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,943 copying build/lib/omicverse/utils/_sample_metadata_alignment.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,946 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,949 copying build/lib/omicverse/utils/agent_backend_dashscope.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,951 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,953 copying build/lib/omicverse/utils/_gene_id_conversion.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,956 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,958 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,961 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,964 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,968 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,970 copying build/lib/omicverse/utils/_seed.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,973 creating build/bdist.linux-armv7l/wheel/omicverse/utils/biocontext 2026-06-12T20:50:49,974 copying build/lib/omicverse/utils/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-06-12T20:50:49,977 copying build/lib/omicverse/utils/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-06-12T20:50:49,980 copying build/lib/omicverse/utils/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-06-12T20:50:49,982 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:49,984 creating build/bdist.linux-armv7l/wheel/omicverse/utils/gpuex 2026-06-12T20:50:49,987 creating build/bdist.linux-armv7l/wheel/omicverse/utils/gpuex/umap 2026-06-12T20:50:49,988 copying build/lib/omicverse/utils/gpuex/umap/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-12T20:50:49,991 copying build/lib/omicverse/utils/gpuex/umap/_sgd.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-12T20:50:49,993 copying build/lib/omicverse/utils/gpuex/umap/_sgd_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-12T20:50:49,996 copying build/lib/omicverse/utils/gpuex/umap/_ab.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-12T20:50:49,998 copying build/lib/omicverse/utils/gpuex/umap/_init.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-12T20:50:50,000 copying build/lib/omicverse/utils/gpuex/umap/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-12T20:50:50,003 copying build/lib/omicverse/utils/gpuex/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex 2026-06-12T20:50:50,005 copying build/lib/omicverse/utils/gpuex/scipy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex 2026-06-12T20:50:50,007 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,010 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,013 copying build/lib/omicverse/utils/_ovagent_paths.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,015 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,017 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,021 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,024 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,027 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,030 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,033 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,036 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,039 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,041 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,043 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,045 copying build/lib/omicverse/utils/_ovagent_lookup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,049 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-06-12T20:50:50,050 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,053 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,056 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,059 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,062 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,065 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,068 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,071 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,073 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,076 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,079 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,082 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,084 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-12T20:50:50,087 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,091 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-06-12T20:50:50,092 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-12T20:50:50,095 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-12T20:50:50,098 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-12T20:50:50,101 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-12T20:50:50,104 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-12T20:50:50,107 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-12T20:50:50,110 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-12T20:50:50,112 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-12T20:50:50,115 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-12T20:50:50,118 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-12T20:50:50,120 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,121 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,124 copying build/lib/omicverse/utils/agent_backend_common.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,126 copying build/lib/omicverse/utils/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,128 copying build/lib/omicverse/utils/_memory.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,131 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-06-12T20:50:50,132 copying build/lib/omicverse/utils/ovagent/permission_policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,134 copying build/lib/omicverse/utils/ovagent/session_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,136 copying build/lib/omicverse/utils/ovagent/tool_runtime_exec.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,139 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,141 copying build/lib/omicverse/utils/ovagent/turn_artifacts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,144 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,147 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,149 copying build/lib/omicverse/utils/ovagent/context_budget.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,152 copying build/lib/omicverse/utils/ovagent/event_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,154 copying build/lib/omicverse/utils/ovagent/tool_runtime_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,157 copying build/lib/omicverse/utils/ovagent/prompt_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,159 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,162 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,164 copying build/lib/omicverse/utils/ovagent/tool_runtime_workspace.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,166 copying build/lib/omicverse/utils/ovagent/tool_runtime_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,169 copying build/lib/omicverse/utils/ovagent/analysis_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,171 copying build/lib/omicverse/utils/ovagent/analysis_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,174 copying build/lib/omicverse/utils/ovagent/turn_followup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,176 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,178 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,180 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,182 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,185 copying build/lib/omicverse/utils/ovagent/tool_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,187 copying build/lib/omicverse/utils/ovagent/tool_scheduler.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,189 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,191 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,193 copying build/lib/omicverse/utils/ovagent/codegen_tool_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,195 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,198 copying build/lib/omicverse/utils/ovagent/repair_loop.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,200 copying build/lib/omicverse/utils/ovagent/analysis_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,202 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,205 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,208 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-12T20:50:50,210 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,213 copying build/lib/omicverse/utils/agent_backend_gemini.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,216 copying build/lib/omicverse/utils/_metabolights.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-12T20:50:50,218 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-12T20:50:50,222 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-06-12T20:50:50,222 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,226 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,229 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,232 creating build/bdist.linux-armv7l/wheel/omicverse/pp/_scrublet_backend 2026-06-12T20:50:50,233 copying build/lib/omicverse/pp/_scrublet_backend/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-06-12T20:50:50,236 copying build/lib/omicverse/pp/_scrublet_backend/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-06-12T20:50:50,238 copying build/lib/omicverse/pp/_scrublet_backend/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-06-12T20:50:50,240 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,243 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,245 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,248 copying build/lib/omicverse/pp/_scdblfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,250 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,252 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,255 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,258 creating build/bdist.linux-armv7l/wheel/omicverse/pp/ambient 2026-06-12T20:50:50,259 copying build/lib/omicverse/pp/ambient/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-12T20:50:50,261 copying build/lib/omicverse/pp/ambient/_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-12T20:50:50,264 copying build/lib/omicverse/pp/ambient/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-12T20:50:50,265 copying build/lib/omicverse/pp/ambient/_ambient.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-12T20:50:50,268 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,271 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,273 copying build/lib/omicverse/pp/_tsne_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,275 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,277 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,280 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-06-12T20:50:50,281 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-06-12T20:50:50,284 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-06-12T20:50:50,286 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-06-12T20:50:50,288 copying build/lib/omicverse/pp/_gpu_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,290 copying build/lib/omicverse/pp/_leiden_gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,292 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,295 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,298 copying build/lib/omicverse/pp/_doubletfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,300 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,303 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,305 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,308 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,310 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,314 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,316 copying build/lib/omicverse/pp/_champ.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-12T20:50:50,319 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-06-12T20:50:50,321 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-06-12T20:50:50,322 copying build/lib/omicverse/io/spatial/_atera.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-12T20:50:50,326 copying build/lib/omicverse/io/spatial/_xenium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-12T20:50:50,328 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-12T20:50:50,331 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-12T20:50:50,333 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-12T20:50:50,335 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-12T20:50:50,338 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-06-12T20:50:50,339 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-06-12T20:50:50,342 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-06-12T20:50:50,343 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-12T20:50:50,346 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-12T20:50:50,348 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-12T20:50:50,350 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-12T20:50:50,353 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-06-12T20:50:50,354 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-06-12T20:50:50,356 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-06-12T20:50:50,358 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-06-12T20:50:50,360 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-06-12T20:50:50,362 creating build/bdist.linux-armv7l/wheel/omicverse/micro 2026-06-12T20:50:50,363 copying build/lib/omicverse/micro/_phylo.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-12T20:50:50,365 copying build/lib/omicverse/micro/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-12T20:50:50,367 copying build/lib/omicverse/micro/_pp.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-12T20:50:50,370 copying build/lib/omicverse/micro/_ord.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-12T20:50:50,372 copying build/lib/omicverse/micro/_meta.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-12T20:50:50,376 copying build/lib/omicverse/micro/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-12T20:50:50,378 copying build/lib/omicverse/micro/_pair.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-12T20:50:50,382 copying build/lib/omicverse/micro/_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-12T20:50:50,386 copying build/lib/omicverse/micro/_da.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-12T20:50:50,390 creating build/bdist.linux-armv7l/wheel/omicverse/genetics 2026-06-12T20:50:50,391 copying build/lib/omicverse/genetics/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,395 copying build/lib/omicverse/genetics/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,398 copying build/lib/omicverse/genetics/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,401 copying build/lib/omicverse/genetics/_twas.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,404 copying build/lib/omicverse/genetics/_coloc.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,407 copying build/lib/omicverse/genetics/_eqtl.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,409 copying build/lib/omicverse/genetics/_scdrs.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,412 copying build/lib/omicverse/genetics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,415 copying build/lib/omicverse/genetics/_simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,418 copying build/lib/omicverse/genetics/_gwas.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,422 copying build/lib/omicverse/genetics/_mr.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,424 copying build/lib/omicverse/genetics/_gsmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,428 copying build/lib/omicverse/genetics/_ldsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,432 copying build/lib/omicverse/genetics/_finemap.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-12T20:50:50,434 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-12T20:50:50,437 running install_egg_info 2026-06-12T20:50:50,443 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.2.2-py3.11.egg-info 2026-06-12T20:50:50,459 running install_scripts 2026-06-12T20:50:50,475 creating build/bdist.linux-armv7l/wheel/omicverse-2.2.2.dist-info/WHEEL 2026-06-12T20:50:50,478 creating '/tmp/pip-wheel-soqv7f4t/.tmp-uibyz0j9/omicverse-2.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-12T20:50:50,482 adding 'omicverse/__init__.py' 2026-06-12T20:50:50,484 adding 'omicverse/_lazy_loader.py' 2026-06-12T20:50:50,487 adding 'omicverse/_monitor.py' 2026-06-12T20:50:50,489 adding 'omicverse/_oom_compat.py' 2026-06-12T20:50:50,491 adding 'omicverse/_optional.py' 2026-06-12T20:50:50,498 adding 'omicverse/_registry.py' 2026-06-12T20:50:50,504 adding 'omicverse/_settings.py' 2026-06-12T20:50:50,508 adding 'omicverse/claw.py' 2026-06-12T20:50:50,510 adding 'omicverse/cli.py' 2026-06-12T20:50:50,512 adding 'omicverse/agent/__init__.py' 2026-06-12T20:50:50,516 adding 'omicverse/airr/__init__.py' 2026-06-12T20:50:50,522 adding 'omicverse/airr/_bcr.py' 2026-06-12T20:50:50,529 adding 'omicverse/airr/_bulk.py' 2026-06-12T20:50:50,533 adding 'omicverse/airr/_clonotype.py' 2026-06-12T20:50:50,537 adding 'omicverse/airr/_metrics.py' 2026-06-12T20:50:50,539 adding 'omicverse/airr/_qc.py' 2026-06-12T20:50:50,549 adding 'omicverse/airr/_tcr.py' 2026-06-12T20:50:50,556 adding 'omicverse/airr/_tcr_gex.py' 2026-06-12T20:50:50,560 adding 'omicverse/airr/io.py' 2026-06-12T20:50:50,563 adding 'omicverse/airr/plotting.py' 2026-06-12T20:50:50,567 adding 'omicverse/alignment/STAR.py' 2026-06-12T20:50:50,569 adding 'omicverse/alignment/__init__.py' 2026-06-12T20:50:50,571 adding 'omicverse/alignment/_cli_utils.py' 2026-06-12T20:50:50,574 adding 'omicverse/alignment/_db.py' 2026-06-12T20:50:50,577 adding 'omicverse/alignment/amplicon_16s.py' 2026-06-12T20:50:50,580 adding 'omicverse/alignment/cutadapt.py' 2026-06-12T20:50:50,583 adding 'omicverse/alignment/dada2.py' 2026-06-12T20:50:50,585 adding 'omicverse/alignment/fastp.py' 2026-06-12T20:50:50,587 adding 'omicverse/alignment/fasttree.py' 2026-06-12T20:50:50,590 adding 'omicverse/alignment/featureCount.py' 2026-06-12T20:50:50,592 adding 'omicverse/alignment/fq_dump.py' 2026-06-12T20:50:50,596 adding 'omicverse/alignment/kb_api.py' 2026-06-12T20:50:50,599 adding 'omicverse/alignment/mafft.py' 2026-06-12T20:50:50,601 adding 'omicverse/alignment/phylogeny.py' 2026-06-12T20:50:50,603 adding 'omicverse/alignment/pipeline.py' 2026-06-12T20:50:50,605 adding 'omicverse/alignment/prefetch.py' 2026-06-12T20:50:50,609 adding 'omicverse/alignment/simpleaf.py' 2026-06-12T20:50:50,612 adding 'omicverse/alignment/vsearch.py' 2026-06-12T20:50:50,622 adding 'omicverse/bulk/_Deseq2.py' 2026-06-12T20:50:50,626 adding 'omicverse/bulk/_Enrichment.py' 2026-06-12T20:50:50,630 adding 'omicverse/bulk/_Gene_module.py' 2026-06-12T20:50:50,632 adding 'omicverse/bulk/__init__.py' 2026-06-12T20:50:50,674 adding 'omicverse/bulk/_chm13.py' 2026-06-12T20:50:50,681 adding 'omicverse/bulk/_combat.py' 2026-06-12T20:50:50,684 adding 'omicverse/bulk/_decov.py' 2026-06-12T20:50:50,686 adding 'omicverse/bulk/_df_apply.py' 2026-06-12T20:50:50,691 adding 'omicverse/bulk/_dynamicTree.py' 2026-06-12T20:50:50,694 adding 'omicverse/bulk/_enrich_plot.py' 2026-06-12T20:50:50,697 adding 'omicverse/bulk/_gsea_numpy.py' 2026-06-12T20:50:50,699 adding 'omicverse/bulk/_network.py' 2026-06-12T20:50:50,702 adding 'omicverse/bulk/_ora.py' 2026-06-12T20:50:50,704 adding 'omicverse/bulk/_tcga.py' 2026-06-12T20:50:50,707 adding 'omicverse/bulk/_wgcna.py' 2026-06-12T20:50:50,710 adding 'omicverse/bulk/.ipynb_checkpoints/_wgcna-checkpoint.py' 2026-06-12T20:50:50,712 adding 'omicverse/bulk/_alignment/__init__.py' 2026-06-12T20:50:50,714 adding 'omicverse/bulk2single/__init__.py' 2026-06-12T20:50:50,718 adding 'omicverse/bulk2single/_bulk2single.py' 2026-06-12T20:50:50,720 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-06-12T20:50:50,723 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-06-12T20:50:50,728 adding 'omicverse/bulk2single/_map_utils.py' 2026-06-12T20:50:50,733 adding 'omicverse/bulk2single/_map_utils1.py' 2026-06-12T20:50:50,735 adding 'omicverse/bulk2single/_scsemi.py' 2026-06-12T20:50:50,738 adding 'omicverse/bulk2single/_single2spatial.py' 2026-06-12T20:50:50,741 adding 'omicverse/bulk2single/_utils.py' 2026-06-12T20:50:50,744 adding 'omicverse/bulk2single/_vae.py' 2026-06-12T20:50:50,746 adding 'omicverse/datasets/__init__.py' 2026-06-12T20:50:50,749 adding 'omicverse/datasets/_airr.py' 2026-06-12T20:50:50,751 adding 'omicverse/datasets/_ambient.py' 2026-06-12T20:50:50,757 adding 'omicverse/datasets/_datasets.py' 2026-06-12T20:50:50,760 adding 'omicverse/datasets/_ev.py' 2026-06-12T20:50:50,762 adding 'omicverse/datasets/_genetics.py' 2026-06-12T20:50:50,764 adding 'omicverse/datasets/_metabolism.py' 2026-06-12T20:50:50,766 adding 'omicverse/datasets/_protein.py' 2026-06-12T20:50:50,768 adding 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