2026-06-13T14:04:25,714 Created temporary directory: /tmp/pip-ephem-wheel-cache-9ggq15u3 2026-06-13T14:04:25,715 Created temporary directory: /tmp/pip-build-tracker-xzsmhgn4 2026-06-13T14:04:25,716 Initialized build tracking at /tmp/pip-build-tracker-xzsmhgn4 2026-06-13T14:04:25,717 Created build tracker: /tmp/pip-build-tracker-xzsmhgn4 2026-06-13T14:04:25,717 Entered build tracker: /tmp/pip-build-tracker-xzsmhgn4 2026-06-13T14:04:25,718 Created temporary directory: /tmp/pip-wheel-dpstc41x 2026-06-13T14:04:25,721 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-13T14:04:25,723 Created temporary directory: /tmp/pip-ephem-wheel-cache-4me0ihp_ 2026-06-13T14:04:25,745 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-13T14:04:25,748 2 location(s) to search for versions of omicverse: 2026-06-13T14:04:25,748 * https://pypi.org/simple/omicverse/ 2026-06-13T14:04:25,748 * https://www.piwheels.org/simple/omicverse/ 2026-06-13T14:04:25,749 Fetching project page and analyzing links: https://pypi.org/simple/omicverse/ 2026-06-13T14:04:25,750 Getting page https://pypi.org/simple/omicverse/ 2026-06-13T14:04:25,751 Found index url https://pypi.org/simple 2026-06-13T14:04:25,903 Fetched page https://pypi.org/simple/omicverse/ as application/vnd.pypi.simple.v1+json 2026-06-13T14:04:25,929 Skipping link: No binaries permitted for omicverse: 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-06-13T14:04:26,303 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-06-13T14:04:26,303 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-06-13T14:04:26,330 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-06-13T14:04:26,349 Collecting omicverse==2.2.3 2026-06-13T14:04:26,351 Created temporary directory: /tmp/pip-unpack-bzg4eai2 2026-06-13T14:04:26,502 Downloading omicverse-2.2.3.tar.gz (13.9 MB) 2026-06-13T14:04:33,327 Added omicverse==2.2.3 from https://files.pythonhosted.org/packages/4b/73/27155395e1b79acdf51aab5c0836b70e175ca704fe3a336c03c94760a4aa/omicverse-2.2.3.tar.gz to build tracker '/tmp/pip-build-tracker-xzsmhgn4' 2026-06-13T14:04:33,337 Created temporary directory: /tmp/pip-build-env-r2aixrdp 2026-06-13T14:04:33,341 Installing build dependencies: started 2026-06-13T14:04:33,342 Running command pip subprocess to install build dependencies 2026-06-13T14:04:34,501 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-13T14:04:34,943 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-13T14:04:34,966 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-13T14:04:36,759 Collecting setuptools>=61 2026-06-13T14:04:36,760 Obtaining dependency information for setuptools>=61 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-13T14:04:36,774 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-13T14:04:37,015 Collecting wheel 2026-06-13T14:04:37,016 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-06-13T14:04:37,029 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-06-13T14:04:39,068 Collecting Cython 2026-06-13T14:04:39,070 Obtaining dependency information for Cython from https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl.metadata 2026-06-13T14:04:39,085 Using cached https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl.metadata (7.1 kB) 2026-06-13T14:04:39,274 Collecting packaging>=24.0 2026-06-13T14:04:39,276 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-06-13T14:04:39,307 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-06-13T14:04:39,562 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-13T14:04:40,472 Using cached https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl (11.2 MB) 2026-06-13T14:04:40,680 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-13T14:04:40,765 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-13T14:04:40,806 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-13T14:04:41,650 Using cached https://www.piwheels.org/simple/cython/cython-3.2.5-cp311-cp311-linux_armv7l.whl (11.2 MB) 2026-06-13T14:04:42,111 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-13T14:04:42,194 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-13T14:04:44,951 Installing collected packages: setuptools, packaging, Cython, wheel 2026-06-13T14:04:52,035 Creating /tmp/pip-build-env-r2aixrdp/overlay/local/bin 2026-06-13T14:04:52,038 changing mode of /tmp/pip-build-env-r2aixrdp/overlay/local/bin/cygdb to 755 2026-06-13T14:04:52,040 changing mode of /tmp/pip-build-env-r2aixrdp/overlay/local/bin/cython to 755 2026-06-13T14:04:52,042 changing mode of /tmp/pip-build-env-r2aixrdp/overlay/local/bin/cythonize to 755 2026-06-13T14:04:52,201 changing mode of /tmp/pip-build-env-r2aixrdp/overlay/local/bin/wheel to 755 2026-06-13T14:04:52,229 Successfully installed Cython-3.2.5 packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-06-13T14:04:52,624 Installing build dependencies: finished with status 'done' 2026-06-13T14:04:52,630 Getting requirements to build wheel: started 2026-06-13T14:04:52,631 Running command Getting requirements to build wheel 2026-06-13T14:04:53,379 /tmp/pip-build-env-r2aixrdp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-13T14:04:53,379 !! 2026-06-13T14:04:53,380 ******************************************************************************** 2026-06-13T14:04:53,381 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-13T14:04:53,382 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-13T14:04:53,383 or your builds will no longer be supported. 2026-06-13T14:04:53,384 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-13T14:04:53,385 ******************************************************************************** 2026-06-13T14:04:53,386 !! 2026-06-13T14:04:53,386 corresp(dist, value, root_dir) 2026-06-13T14:04:53,681 running egg_info 2026-06-13T14:04:53,687 writing omicverse.egg-info/PKG-INFO 2026-06-13T14:04:53,723 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-06-13T14:04:53,725 writing entry points to omicverse.egg-info/entry_points.txt 2026-06-13T14:04:53,745 writing requirements to omicverse.egg-info/requires.txt 2026-06-13T14:04:53,746 writing top-level names to omicverse.egg-info/top_level.txt 2026-06-13T14:04:54,058 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-13T14:04:54,137 reading manifest template 'MANIFEST.in' 2026-06-13T14:04:55,456 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-06-13T14:04:57,491 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-06-13T14:04:58,126 warning: no files found matching '*.yml' under directory 'omicverse' 2026-06-13T14:05:04,558 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-06-13T14:05:05,174 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-06-13T14:05:05,791 warning: no files found matching '*.svg' under directory 'omicverse' 2026-06-13T14:05:06,400 warning: no files found matching '*.ico' under directory 'omicverse' 2026-06-13T14:05:07,016 warning: no files found matching '*.db' under directory 'omicverse' 2026-06-13T14:05:07,625 warning: no files found matching '*.npz' under directory 'omicverse' 2026-06-13T14:05:08,243 warning: no files found matching '*.gz' under directory 'omicverse' 2026-06-13T14:05:08,243 no previously-included directories found matching '.git' 2026-06-13T14:05:08,244 no previously-included directories found matching '.github' 2026-06-13T14:05:08,253 no previously-included directories found matching '.claude' 2026-06-13T14:05:08,253 no previously-included directories found matching '.pytest_cache' 2026-06-13T14:05:08,254 no previously-included directories found matching '.ruff_cache' 2026-06-13T14:05:08,257 no previously-included directories found matching '.vscode' 2026-06-13T14:05:08,261 no previously-included directories found matching 'docs' 2026-06-13T14:05:08,265 no previously-included directories found matching 'tests' 2026-06-13T14:05:08,269 no previously-included directories found matching 'OvIntelligence' 2026-06-13T14:05:08,273 no previously-included directories found matching 'READMEM' 2026-06-13T14:05:08,277 no previously-included directories found matching 'omicverse_guide' 2026-06-13T14:05:08,282 no previously-included directories found matching 'omicverse_web' 2026-06-13T14:05:08,285 no previously-included directories found matching 'tmp' 2026-06-13T14:05:08,289 no previously-included directories found matching 'tmp_omicverse' 2026-06-13T14:05:08,293 no previously-included directories found matching 'Skill_Seekers' 2026-06-13T14:05:08,301 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-06-13T14:05:08,311 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-06-13T14:05:08,319 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-06-13T14:05:08,319 adding license file 'LICENSE' 2026-06-13T14:05:08,416 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-13T14:05:08,533 Getting requirements to build wheel: finished with status 'done' 2026-06-13T14:05:08,537 Created temporary directory: /tmp/pip-modern-metadata-qgs160lb 2026-06-13T14:05:08,539 Preparing metadata (pyproject.toml): started 2026-06-13T14:05:08,541 Running command Preparing metadata (pyproject.toml) 2026-06-13T14:05:09,199 /tmp/pip-build-env-r2aixrdp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-13T14:05:09,199 !! 2026-06-13T14:05:09,200 ******************************************************************************** 2026-06-13T14:05:09,201 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-13T14:05:09,202 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-13T14:05:09,202 or your builds will no longer be supported. 2026-06-13T14:05:09,203 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-13T14:05:09,204 ******************************************************************************** 2026-06-13T14:05:09,205 !! 2026-06-13T14:05:09,206 corresp(dist, value, root_dir) 2026-06-13T14:05:09,496 running dist_info 2026-06-13T14:05:09,507 creating /tmp/pip-modern-metadata-qgs160lb/omicverse.egg-info 2026-06-13T14:05:09,508 writing /tmp/pip-modern-metadata-qgs160lb/omicverse.egg-info/PKG-INFO 2026-06-13T14:05:09,544 writing dependency_links to /tmp/pip-modern-metadata-qgs160lb/omicverse.egg-info/dependency_links.txt 2026-06-13T14:05:09,546 writing entry points to /tmp/pip-modern-metadata-qgs160lb/omicverse.egg-info/entry_points.txt 2026-06-13T14:05:09,565 writing requirements to /tmp/pip-modern-metadata-qgs160lb/omicverse.egg-info/requires.txt 2026-06-13T14:05:09,567 writing top-level names to /tmp/pip-modern-metadata-qgs160lb/omicverse.egg-info/top_level.txt 2026-06-13T14:05:09,568 writing manifest file '/tmp/pip-modern-metadata-qgs160lb/omicverse.egg-info/SOURCES.txt' 2026-06-13T14:05:09,827 reading manifest file '/tmp/pip-modern-metadata-qgs160lb/omicverse.egg-info/SOURCES.txt' 2026-06-13T14:05:09,829 reading manifest template 'MANIFEST.in' 2026-06-13T14:05:11,108 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-06-13T14:05:12,967 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-06-13T14:05:13,656 warning: no files found matching '*.yml' under directory 'omicverse' 2026-06-13T14:05:19,272 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-06-13T14:05:19,900 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-06-13T14:05:20,568 warning: no files found matching '*.svg' under directory 'omicverse' 2026-06-13T14:05:21,216 warning: no files found matching '*.ico' under directory 'omicverse' 2026-06-13T14:05:21,848 warning: no files found matching '*.db' under directory 'omicverse' 2026-06-13T14:05:22,452 warning: no files found matching '*.npz' under directory 'omicverse' 2026-06-13T14:05:23,081 warning: no files found matching '*.gz' under directory 'omicverse' 2026-06-13T14:05:23,084 no previously-included directories found matching '.git' 2026-06-13T14:05:23,086 no previously-included directories found matching '.github' 2026-06-13T14:05:23,089 no previously-included directories found matching '.claude' 2026-06-13T14:05:23,091 no previously-included directories found matching '.pytest_cache' 2026-06-13T14:05:23,094 no previously-included directories found matching '.ruff_cache' 2026-06-13T14:05:23,096 no previously-included directories found matching '.vscode' 2026-06-13T14:05:23,099 no previously-included directories found matching 'docs' 2026-06-13T14:05:23,101 no previously-included directories found matching 'tests' 2026-06-13T14:05:23,104 no previously-included directories found matching 'OvIntelligence' 2026-06-13T14:05:23,106 no previously-included directories found matching 'READMEM' 2026-06-13T14:05:23,109 no previously-included directories found matching 'omicverse_guide' 2026-06-13T14:05:23,112 no previously-included directories found matching 'omicverse_web' 2026-06-13T14:05:23,114 no previously-included directories found matching 'tmp' 2026-06-13T14:05:23,117 no previously-included directories found matching 'tmp_omicverse' 2026-06-13T14:05:23,119 no previously-included directories found matching 'Skill_Seekers' 2026-06-13T14:05:23,125 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-06-13T14:05:23,131 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-06-13T14:05:23,137 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-06-13T14:05:23,137 adding license file 'LICENSE' 2026-06-13T14:05:23,209 writing manifest file '/tmp/pip-modern-metadata-qgs160lb/omicverse.egg-info/SOURCES.txt' 2026-06-13T14:05:23,212 creating '/tmp/pip-modern-metadata-qgs160lb/omicverse-2.2.3.dist-info' 2026-06-13T14:05:23,363 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-13T14:05:23,379 Source in /tmp/pip-wheel-dpstc41x/omicverse_abfaf22710d44ae58b3c5d2db4c40642 has version 2.2.3, which satisfies requirement omicverse==2.2.3 from https://files.pythonhosted.org/packages/4b/73/27155395e1b79acdf51aab5c0836b70e175ca704fe3a336c03c94760a4aa/omicverse-2.2.3.tar.gz 2026-06-13T14:05:23,380 Removed omicverse==2.2.3 from https://files.pythonhosted.org/packages/4b/73/27155395e1b79acdf51aab5c0836b70e175ca704fe3a336c03c94760a4aa/omicverse-2.2.3.tar.gz from build tracker '/tmp/pip-build-tracker-xzsmhgn4' 2026-06-13T14:05:23,407 Created temporary directory: /tmp/pip-unpack-quratouq 2026-06-13T14:05:23,408 Building wheels for collected packages: omicverse 2026-06-13T14:05:23,412 Created temporary directory: /tmp/pip-wheel-2j1mey_5 2026-06-13T14:05:23,413 Destination directory: /tmp/pip-wheel-2j1mey_5 2026-06-13T14:05:23,415 Building wheel for omicverse (pyproject.toml): started 2026-06-13T14:05:23,416 Running command Building wheel for omicverse (pyproject.toml) 2026-06-13T14:05:24,096 /tmp/pip-build-env-r2aixrdp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-13T14:05:24,096 !! 2026-06-13T14:05:24,097 ******************************************************************************** 2026-06-13T14:05:24,098 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-13T14:05:24,099 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-13T14:05:24,099 or your builds will no longer be supported. 2026-06-13T14:05:24,100 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-13T14:05:24,101 ******************************************************************************** 2026-06-13T14:05:24,102 !! 2026-06-13T14:05:24,102 corresp(dist, value, root_dir) 2026-06-13T14:05:24,381 running bdist_wheel 2026-06-13T14:05:24,402 running build 2026-06-13T14:05:24,402 running build_py 2026-06-13T14:05:24,409 creating build/lib/omicverse 2026-06-13T14:05:24,411 copying omicverse/_settings.py -> build/lib/omicverse 2026-06-13T14:05:24,414 copying omicverse/_oom_compat.py -> build/lib/omicverse 2026-06-13T14:05:24,417 copying omicverse/_optional.py -> build/lib/omicverse 2026-06-13T14:05:24,419 copying omicverse/claw.py -> build/lib/omicverse 2026-06-13T14:05:24,422 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-06-13T14:05:24,424 copying omicverse/_registry.py -> build/lib/omicverse 2026-06-13T14:05:24,427 copying omicverse/__init__.py -> build/lib/omicverse 2026-06-13T14:05:24,430 copying omicverse/_monitor.py -> build/lib/omicverse 2026-06-13T14:05:24,433 copying omicverse/cli.py -> build/lib/omicverse 2026-06-13T14:05:24,436 creating build/lib/omicverse/protein 2026-06-13T14:05:24,437 copying omicverse/protein/_norm.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,439 copying omicverse/protein/_summarize.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,442 copying omicverse/protein/_impute.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,444 copying omicverse/protein/_enrich.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,446 copying omicverse/protein/plotting.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,449 copying omicverse/protein/__init__.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,451 copying omicverse/protein/_design.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,453 copying omicverse/protein/_simulate.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,455 copying omicverse/protein/_de.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,458 copying omicverse/protein/io.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,461 copying omicverse/protein/_qc.py -> build/lib/omicverse/protein 2026-06-13T14:05:24,464 creating build/lib/omicverse/agent 2026-06-13T14:05:24,465 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-06-13T14:05:24,468 creating build/lib/omicverse/llm 2026-06-13T14:05:24,470 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,472 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,476 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,480 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,483 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,485 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,488 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,493 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,498 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,502 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,504 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,506 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-06-13T14:05:24,510 creating build/lib/omicverse/pp 2026-06-13T14:05:24,511 copying omicverse/pp/_leiden_gpu.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,513 copying omicverse/pp/_gpu_cache.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,515 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,517 copying omicverse/pp/_champ.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,520 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,522 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,525 copying omicverse/pp/_doubletfinder.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,528 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,530 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,533 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,535 copying omicverse/pp/_tsne_cpu.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,537 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,540 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,543 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,545 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,548 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,551 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,554 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,556 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,558 copying omicverse/pp/_scdblfinder.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,560 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,563 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,568 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,571 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,573 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,576 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,578 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-06-13T14:05:24,584 creating build/lib/omicverse/single 2026-06-13T14:05:24,585 copying omicverse/single/_autoresolution.py -> build/lib/omicverse/single 2026-06-13T14:05:24,588 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-06-13T14:05:24,591 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-06-13T14:05:24,594 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-06-13T14:05:24,596 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-06-13T14:05:24,599 copying omicverse/single/_liana.py -> build/lib/omicverse/single 2026-06-13T14:05:24,602 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-06-13T14:05:24,605 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-06-13T14:05:24,608 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-06-13T14:05:24,611 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-06-13T14:05:24,614 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-06-13T14:05:24,617 copying omicverse/single/_stavia.py -> build/lib/omicverse/single 2026-06-13T14:05:24,619 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-06-13T14:05:24,622 copying omicverse/single/_nmf.py -> build/lib/omicverse/single 2026-06-13T14:05:24,625 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-06-13T14:05:24,628 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-06-13T14:05:24,631 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-06-13T14:05:24,634 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-06-13T14:05:24,638 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-06-13T14:05:24,642 copying omicverse/single/_monocle.py -> build/lib/omicverse/single 2026-06-13T14:05:24,645 copying omicverse/single/_pseudotime_fate.py -> build/lib/omicverse/single 2026-06-13T14:05:24,649 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-06-13T14:05:24,652 copying omicverse/single/_perturb.py -> build/lib/omicverse/single 2026-06-13T14:05:24,656 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-06-13T14:05:24,658 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-06-13T14:05:24,665 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-06-13T14:05:24,668 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-06-13T14:05:24,671 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-06-13T14:05:24,674 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-06-13T14:05:24,676 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-06-13T14:05:24,678 copying omicverse/single/_comm.py -> build/lib/omicverse/single 2026-06-13T14:05:24,681 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-06-13T14:05:24,684 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-06-13T14:05:24,688 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-06-13T14:05:24,690 copying omicverse/single/_dynamic_features.py -> build/lib/omicverse/single 2026-06-13T14:05:24,693 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-06-13T14:05:24,696 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-06-13T14:05:24,699 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-06-13T14:05:24,702 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-06-13T14:05:24,704 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-06-13T14:05:24,706 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-06-13T14:05:24,709 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-06-13T14:05:24,712 copying omicverse/single/_cnv.py -> build/lib/omicverse/single 2026-06-13T14:05:24,714 copying omicverse/single/_pseudobulk.py -> build/lib/omicverse/single 2026-06-13T14:05:24,717 copying omicverse/single/_augur.py -> build/lib/omicverse/single 2026-06-13T14:05:24,720 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-06-13T14:05:24,723 copying omicverse/single/_metabolism.py -> build/lib/omicverse/single 2026-06-13T14:05:24,725 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-06-13T14:05:24,734 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-06-13T14:05:24,736 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-06-13T14:05:24,739 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-06-13T14:05:24,742 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-06-13T14:05:24,745 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-06-13T14:05:24,748 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-06-13T14:05:24,750 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-06-13T14:05:24,753 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-06-13T14:05:24,756 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-06-13T14:05:24,760 creating build/lib/omicverse/micro 2026-06-13T14:05:24,760 copying omicverse/micro/_ord.py -> build/lib/omicverse/micro 2026-06-13T14:05:24,763 copying omicverse/micro/_meta.py -> build/lib/omicverse/micro 2026-06-13T14:05:24,766 copying omicverse/micro/_pp.py -> build/lib/omicverse/micro 2026-06-13T14:05:24,768 copying omicverse/micro/_diversity.py -> build/lib/omicverse/micro 2026-06-13T14:05:24,771 copying omicverse/micro/_pair.py -> build/lib/omicverse/micro 2026-06-13T14:05:24,774 copying omicverse/micro/__init__.py -> build/lib/omicverse/micro 2026-06-13T14:05:24,776 copying omicverse/micro/_phylo.py -> build/lib/omicverse/micro 2026-06-13T14:05:24,778 copying omicverse/micro/_da.py -> build/lib/omicverse/micro 2026-06-13T14:05:24,780 copying omicverse/micro/_utils.py -> build/lib/omicverse/micro 2026-06-13T14:05:24,784 creating build/lib/omicverse/utils 2026-06-13T14:05:24,785 copying omicverse/utils/agent_backend_openai.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,789 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,792 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,795 copying omicverse/utils/_ovagent_lookup.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,797 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,800 copying omicverse/utils/_ovagent_paths.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,802 copying omicverse/utils/_compat.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,805 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,807 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,811 copying omicverse/utils/_memory.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,813 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,815 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,818 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,820 copying omicverse/utils/_seed.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,823 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,825 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,827 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,830 copying omicverse/utils/_metabolights.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,833 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,836 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,838 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,841 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,844 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,847 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,849 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,852 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,855 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,858 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,860 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,862 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,866 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,869 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,872 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,875 copying omicverse/utils/agent_backend_streaming.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,878 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,880 copying omicverse/utils/agent_backend_anthropic.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,883 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,887 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,889 copying omicverse/utils/registry.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,891 copying omicverse/utils/agent_backend_dashscope.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,893 copying omicverse/utils/_sample_metadata_alignment.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,897 copying omicverse/utils/_gene_id_conversion.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,899 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,902 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,904 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,906 copying omicverse/utils/agent_backend_gemini.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,909 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,911 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,913 copying omicverse/utils/agent_backend_common.py -> build/lib/omicverse/utils 2026-06-13T14:05:24,917 creating build/lib/omicverse/genetics 2026-06-13T14:05:24,918 copying omicverse/genetics/_eqtl.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,920 copying omicverse/genetics/_scdrs.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,923 copying omicverse/genetics/_gwas.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,925 copying omicverse/genetics/_mr.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,928 copying omicverse/genetics/_finemap.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,931 copying omicverse/genetics/plotting.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,935 copying omicverse/genetics/_ldsc.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,937 copying omicverse/genetics/__init__.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,940 copying omicverse/genetics/_twas.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,943 copying omicverse/genetics/_gsmap.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,946 copying omicverse/genetics/_coloc.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,948 copying omicverse/genetics/_simulate.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,951 copying omicverse/genetics/io.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,954 copying omicverse/genetics/_utils.py -> build/lib/omicverse/genetics 2026-06-13T14:05:24,958 creating build/lib/omicverse/space 2026-06-13T14:05:24,959 copying omicverse/space/_tissue_zones.py -> build/lib/omicverse/space 2026-06-13T14:05:24,962 copying omicverse/space/_split.py -> build/lib/omicverse/space 2026-06-13T14:05:24,965 copying omicverse/space/_cellcharter.py -> build/lib/omicverse/space 2026-06-13T14:05:24,967 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-06-13T14:05:24,970 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-06-13T14:05:24,973 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-06-13T14:05:24,976 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-06-13T14:05:24,979 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-06-13T14:05:24,982 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-06-13T14:05:24,985 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-06-13T14:05:24,987 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-06-13T14:05:24,991 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-06-13T14:05:24,994 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-06-13T14:05:24,996 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-06-13T14:05:24,999 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-06-13T14:05:25,002 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-06-13T14:05:25,004 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-06-13T14:05:25,007 creating build/lib/omicverse/alignment 2026-06-13T14:05:25,008 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,010 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,013 copying omicverse/alignment/simpleaf.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,015 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,018 copying omicverse/alignment/vsearch.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,020 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,024 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,026 copying omicverse/alignment/mafft.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,028 copying omicverse/alignment/amplicon_16s.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,031 copying omicverse/alignment/cutadapt.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,034 copying omicverse/alignment/phylogeny.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,036 copying omicverse/alignment/_db.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,038 copying omicverse/alignment/dada2.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,041 copying omicverse/alignment/fasttree.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,043 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,045 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,047 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,050 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-06-13T14:05:25,054 creating build/lib/omicverse/mcp 2026-06-13T14:05:25,055 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,057 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,060 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,063 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,066 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,069 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,072 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,074 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,077 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,079 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,082 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,085 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,089 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-06-13T14:05:25,092 creating build/lib/omicverse/airr 2026-06-13T14:05:25,094 copying omicverse/airr/_bcr.py -> build/lib/omicverse/airr 2026-06-13T14:05:25,097 copying omicverse/airr/_bulk.py -> build/lib/omicverse/airr 2026-06-13T14:05:25,100 copying omicverse/airr/_tcr.py -> build/lib/omicverse/airr 2026-06-13T14:05:25,103 copying omicverse/airr/_clonotype.py -> build/lib/omicverse/airr 2026-06-13T14:05:25,106 copying omicverse/airr/plotting.py -> build/lib/omicverse/airr 2026-06-13T14:05:25,109 copying omicverse/airr/_tcr_gex.py -> build/lib/omicverse/airr 2026-06-13T14:05:25,112 copying omicverse/airr/__init__.py -> build/lib/omicverse/airr 2026-06-13T14:05:25,115 copying omicverse/airr/_metrics.py -> build/lib/omicverse/airr 2026-06-13T14:05:25,117 copying omicverse/airr/io.py -> build/lib/omicverse/airr 2026-06-13T14:05:25,120 copying omicverse/airr/_qc.py -> build/lib/omicverse/airr 2026-06-13T14:05:25,123 creating build/lib/omicverse/bulk2single 2026-06-13T14:05:25,124 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-06-13T14:05:25,127 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-06-13T14:05:25,129 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-06-13T14:05:25,131 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-06-13T14:05:25,134 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-06-13T14:05:25,136 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-06-13T14:05:25,138 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-06-13T14:05:25,141 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-06-13T14:05:25,144 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-06-13T14:05:25,147 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-06-13T14:05:25,150 creating build/lib/omicverse/jarvis 2026-06-13T14:05:25,151 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,154 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,156 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,159 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,161 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,163 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,165 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,167 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,170 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,172 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,175 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,177 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,179 copying omicverse/jarvis/gemini_cli_oauth.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,182 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-06-13T14:05:25,186 creating build/lib/omicverse/io 2026-06-13T14:05:25,187 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-06-13T14:05:25,189 creating build/lib/omicverse/bulk 2026-06-13T14:05:25,190 copying omicverse/bulk/_enrich_plot.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,193 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,196 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,200 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,204 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,207 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,224 copying omicverse/bulk/_wgcna.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,227 copying omicverse/bulk/_gsea_numpy.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,229 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,232 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,234 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,236 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,237 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,240 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,243 copying omicverse/bulk/_ora.py -> build/lib/omicverse/bulk 2026-06-13T14:05:25,247 creating build/lib/omicverse/report 2026-06-13T14:05:25,247 copying omicverse/report/__init__.py -> build/lib/omicverse/report 2026-06-13T14:05:25,249 copying omicverse/report/_html.py -> build/lib/omicverse/report 2026-06-13T14:05:25,252 copying omicverse/report/_provenance.py -> build/lib/omicverse/report 2026-06-13T14:05:25,254 copying omicverse/report/_scanner.py -> build/lib/omicverse/report 2026-06-13T14:05:25,256 copying omicverse/report/_plots.py -> build/lib/omicverse/report 2026-06-13T14:05:25,260 creating build/lib/omicverse/es 2026-06-13T14:05:25,261 copying omicverse/es/_engine.py -> build/lib/omicverse/es 2026-06-13T14:05:25,264 copying omicverse/es/_udt.py -> build/lib/omicverse/es 2026-06-13T14:05:25,266 copying omicverse/es/_zscore.py -> build/lib/omicverse/es 2026-06-13T14:05:25,268 copying omicverse/es/_aucell.py -> build/lib/omicverse/es 2026-06-13T14:05:25,270 copying omicverse/es/_ucell.py -> build/lib/omicverse/es 2026-06-13T14:05:25,273 copying omicverse/es/_mlm.py -> build/lib/omicverse/es 2026-06-13T14:05:25,275 copying omicverse/es/_pv.py -> build/lib/omicverse/es 2026-06-13T14:05:25,277 copying omicverse/es/_decouple.py -> build/lib/omicverse/es 2026-06-13T14:05:25,279 copying omicverse/es/_data.py -> build/lib/omicverse/es 2026-06-13T14:05:25,281 copying omicverse/es/_datatype.py -> build/lib/omicverse/es 2026-06-13T14:05:25,283 copying omicverse/es/_waggr.py -> build/lib/omicverse/es 2026-06-13T14:05:25,286 copying omicverse/es/_methods.py -> build/lib/omicverse/es 2026-06-13T14:05:25,288 copying omicverse/es/_gsva.py -> build/lib/omicverse/es 2026-06-13T14:05:25,291 copying omicverse/es/_odeps.py -> build/lib/omicverse/es 2026-06-13T14:05:25,292 copying omicverse/es/_run.py -> build/lib/omicverse/es 2026-06-13T14:05:25,295 copying omicverse/es/_net.py -> build/lib/omicverse/es 2026-06-13T14:05:25,298 copying omicverse/es/_mdt.py -> build/lib/omicverse/es 2026-06-13T14:05:25,301 copying omicverse/es/_gsea.py -> build/lib/omicverse/es 2026-06-13T14:05:25,303 copying omicverse/es/_consensus.py -> build/lib/omicverse/es 2026-06-13T14:05:25,305 copying omicverse/es/__init__.py -> build/lib/omicverse/es 2026-06-13T14:05:25,308 copying omicverse/es/_method.py -> build/lib/omicverse/es 2026-06-13T14:05:25,310 copying omicverse/es/_ulm.py -> build/lib/omicverse/es 2026-06-13T14:05:25,312 copying omicverse/es/_viper.py -> build/lib/omicverse/es 2026-06-13T14:05:25,315 copying omicverse/es/_ora.py -> build/lib/omicverse/es 2026-06-13T14:05:25,317 copying omicverse/es/_query_set.py -> build/lib/omicverse/es 2026-06-13T14:05:25,320 creating build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:25,321 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:25,323 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:25,325 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:25,327 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:25,329 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:25,331 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:25,334 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:25,336 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:25,338 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:25,340 creating build/lib/omicverse/epi 2026-06-13T14:05:25,341 copying omicverse/epi/utils.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,343 copying omicverse/epi/data.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,345 copying omicverse/epi/single.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,347 copying omicverse/epi/pp.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,349 copying omicverse/epi/pl.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,351 copying omicverse/epi/bulk.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,352 copying omicverse/epi/datasets.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,354 copying omicverse/epi/__init__.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,356 copying omicverse/epi/tl.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,359 copying omicverse/epi/upstream.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,360 copying omicverse/epi/io.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,362 copying omicverse/epi/_utils.py -> build/lib/omicverse/epi 2026-06-13T14:05:25,365 creating build/lib/omicverse/mol 2026-06-13T14:05:25,366 copying omicverse/mol/_pocket.py -> build/lib/omicverse/mol 2026-06-13T14:05:25,368 copying omicverse/mol/_view.py -> build/lib/omicverse/mol 2026-06-13T14:05:25,371 copying omicverse/mol/__init__.py -> build/lib/omicverse/mol 2026-06-13T14:05:25,373 copying omicverse/mol/_structure.py -> build/lib/omicverse/mol 2026-06-13T14:05:25,375 copying omicverse/mol/_drugs.py -> build/lib/omicverse/mol 2026-06-13T14:05:25,378 copying omicverse/mol/_check.py -> build/lib/omicverse/mol 2026-06-13T14:05:25,380 copying omicverse/mol/_dock.py -> build/lib/omicverse/mol 2026-06-13T14:05:25,383 creating build/lib/omicverse/external 2026-06-13T14:05:25,384 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-06-13T14:05:25,387 copying omicverse/external/torch_tsne.py -> build/lib/omicverse/external 2026-06-13T14:05:25,390 creating build/lib/omicverse/pl 2026-06-13T14:05:25,391 copying omicverse/pl/_heatmap_marsilea.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,396 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,400 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,403 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,407 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,410 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,413 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,415 copying omicverse/pl/_perturbation.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,419 copying omicverse/pl/_metacell.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,421 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,424 copying omicverse/pl/_trajectory.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,429 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,432 copying omicverse/pl/_branch_streamplot.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,435 copying omicverse/pl/_report.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,438 copying omicverse/pl/_dynamic_trends.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,441 copying omicverse/pl/_nanostring.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,444 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,447 copying omicverse/pl/_ccc.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,454 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,461 copying omicverse/pl/_plot1cell.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,465 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,468 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,472 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,475 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,482 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,486 copying omicverse/pl/_scanpy_compat.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,489 copying omicverse/pl/_plot_backend.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,495 copying omicverse/pl/_scatterplot_backend.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,502 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,506 copying omicverse/pl/_cnv.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,510 copying omicverse/pl/_metabolism.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,513 copying omicverse/pl/_venn_backend.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,516 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,565 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,568 copying omicverse/pl/_funkyheatmap.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,571 copying omicverse/pl/_upset.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,574 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,578 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,582 copying omicverse/pl/_qc.py -> build/lib/omicverse/pl 2026-06-13T14:05:25,586 creating build/lib/omicverse/metabol 2026-06-13T14:05:25,588 copying omicverse/metabol/_stats.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,591 copying omicverse/metabol/_multifactor.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,594 copying omicverse/metabol/pymetabo.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,598 copying omicverse/metabol/_norm.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,601 copying omicverse/metabol/_msea.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,604 copying omicverse/metabol/_impute.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,607 copying omicverse/metabol/_batch.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,610 copying omicverse/metabol/plotting.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,614 copying omicverse/metabol/_integration.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,616 copying omicverse/metabol/_biomarker.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,620 copying omicverse/metabol/_correlation.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,623 copying omicverse/metabol/__init__.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,626 copying omicverse/metabol/_transform.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,629 copying omicverse/metabol/_plsda.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,633 copying omicverse/metabol/_fetchers.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,638 copying omicverse/metabol/_id_mapping.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,644 copying omicverse/metabol/_mummichog.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,649 copying omicverse/metabol/io.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,654 copying omicverse/metabol/_utils.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,657 copying omicverse/metabol/_qc.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,661 copying omicverse/metabol/_lipidomics.py -> build/lib/omicverse/metabol 2026-06-13T14:05:25,666 creating build/lib/omicverse/datasets 2026-06-13T14:05:25,668 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-06-13T14:05:25,671 copying omicverse/datasets/_timecourse.py -> build/lib/omicverse/datasets 2026-06-13T14:05:25,673 copying omicverse/datasets/_ev.py -> build/lib/omicverse/datasets 2026-06-13T14:05:25,675 copying omicverse/datasets/_genetics.py -> build/lib/omicverse/datasets 2026-06-13T14:05:25,677 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-06-13T14:05:25,679 copying omicverse/datasets/_metabolism.py -> build/lib/omicverse/datasets 2026-06-13T14:05:25,681 copying omicverse/datasets/_ambient.py -> build/lib/omicverse/datasets 2026-06-13T14:05:25,684 copying omicverse/datasets/_protein.py -> build/lib/omicverse/datasets 2026-06-13T14:05:25,686 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-06-13T14:05:25,689 copying omicverse/datasets/_airr.py -> build/lib/omicverse/datasets 2026-06-13T14:05:25,692 creating build/lib/omicverse/llm/scgpt 2026-06-13T14:05:25,693 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-06-13T14:05:25,696 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-06-13T14:05:25,698 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-06-13T14:05:25,700 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-06-13T14:05:25,702 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-06-13T14:05:25,704 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-06-13T14:05:25,707 creating build/lib/omicverse/llm/utils 2026-06-13T14:05:25,708 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-06-13T14:05:25,711 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-06-13T14:05:25,713 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-06-13T14:05:25,716 creating build/lib/omicverse/llm/CellPLM 2026-06-13T14:05:25,717 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-06-13T14:05:25,719 creating build/lib/omicverse/llm/scfoundation 2026-06-13T14:05:25,720 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-06-13T14:05:25,722 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-06-13T14:05:25,725 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-06-13T14:05:25,728 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-06-13T14:05:25,730 creating build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,731 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,734 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,737 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,741 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,744 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,747 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,749 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,752 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,755 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,757 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,761 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,764 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-06-13T14:05:25,769 creating build/lib/omicverse/llm/dr 2026-06-13T14:05:25,770 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-06-13T14:05:25,772 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-06-13T14:05:25,774 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-06-13T14:05:25,776 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-06-13T14:05:25,778 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-06-13T14:05:25,780 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-06-13T14:05:25,782 creating build/lib/omicverse/llm/UCE 2026-06-13T14:05:25,783 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-06-13T14:05:25,785 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-06-13T14:05:25,788 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-06-13T14:05:25,790 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-06-13T14:05:25,792 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-06-13T14:05:25,794 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-06-13T14:05:25,796 creating build/lib/omicverse/llm/domain_research 2026-06-13T14:05:25,797 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-06-13T14:05:25,799 creating build/lib/omicverse/llm/scgpt/utils 2026-06-13T14:05:25,800 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-06-13T14:05:25,802 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-06-13T14:05:25,805 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-06-13T14:05:25,806 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-13T14:05:25,809 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-13T14:05:25,811 creating build/lib/omicverse/llm/scgpt/model 2026-06-13T14:05:25,812 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-06-13T14:05:25,815 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-06-13T14:05:25,817 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-06-13T14:05:25,819 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-06-13T14:05:25,822 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-06-13T14:05:25,824 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-06-13T14:05:25,827 creating build/lib/omicverse/llm/scgpt/scbank 2026-06-13T14:05:25,828 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-13T14:05:25,830 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-13T14:05:25,832 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-13T14:05:25,834 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-13T14:05:25,837 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-06-13T14:05:25,840 creating build/lib/omicverse/llm/scgpt/tasks 2026-06-13T14:05:25,841 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-06-13T14:05:25,844 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-06-13T14:05:25,846 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-06-13T14:05:25,849 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:25,850 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:25,852 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:25,854 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:25,857 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:25,859 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:25,862 creating build/lib/omicverse/llm/CellPLM/utils 2026-06-13T14:05:25,863 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-13T14:05:25,865 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-13T14:05:25,868 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-13T14:05:25,870 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-13T14:05:25,872 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-13T14:05:25,874 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-06-13T14:05:25,877 creating build/lib/omicverse/llm/CellPLM/model 2026-06-13T14:05:25,878 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-06-13T14:05:25,880 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-06-13T14:05:25,883 creating build/lib/omicverse/llm/CellPLM/layer 2026-06-13T14:05:25,884 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-13T14:05:25,886 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-13T14:05:25,890 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-13T14:05:25,892 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-13T14:05:25,894 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-06-13T14:05:25,897 creating build/lib/omicverse/llm/CellPLM/encoder 2026-06-13T14:05:25,898 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-06-13T14:05:25,900 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-06-13T14:05:25,902 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-06-13T14:05:25,904 creating build/lib/omicverse/llm/CellPLM/objective 2026-06-13T14:05:25,905 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-06-13T14:05:25,908 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-06-13T14:05:25,910 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-06-13T14:05:25,912 creating build/lib/omicverse/llm/CellPLM/latent 2026-06-13T14:05:25,913 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-13T14:05:25,915 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-13T14:05:25,917 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-13T14:05:25,919 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-06-13T14:05:25,922 creating build/lib/omicverse/llm/CellPLM/head 2026-06-13T14:05:25,923 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-06-13T14:05:25,925 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-06-13T14:05:25,927 creating build/lib/omicverse/llm/CellPLM/decoder 2026-06-13T14:05:25,928 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-06-13T14:05:25,931 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-06-13T14:05:25,932 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-06-13T14:05:25,935 creating build/lib/omicverse/llm/CellPLM/embedder 2026-06-13T14:05:25,936 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-06-13T14:05:25,938 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-06-13T14:05:25,940 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:25,941 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:25,943 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:25,946 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:25,948 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:25,950 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:25,952 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:25,953 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:25,956 creating build/lib/omicverse/llm/geneformer/mtl 2026-06-13T14:05:25,957 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-13T14:05:25,960 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-13T14:05:25,962 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-13T14:05:25,965 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-13T14:05:25,967 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-13T14:05:25,969 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-13T14:05:25,970 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-06-13T14:05:25,972 creating build/lib/omicverse/llm/dr/retrievers 2026-06-13T14:05:25,973 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-06-13T14:05:25,976 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-06-13T14:05:25,979 creating build/lib/omicverse/llm/dr/verify 2026-06-13T14:05:25,980 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-06-13T14:05:25,982 creating build/lib/omicverse/llm/dr/research 2026-06-13T14:05:25,984 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-06-13T14:05:25,986 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-06-13T14:05:25,988 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-06-13T14:05:25,991 creating build/lib/omicverse/llm/dr/write 2026-06-13T14:05:25,992 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-06-13T14:05:25,994 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-06-13T14:05:25,997 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-06-13T14:05:26,000 creating build/lib/omicverse/llm/dr/scope 2026-06-13T14:05:26,001 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-06-13T14:05:26,003 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-06-13T14:05:26,006 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-06-13T14:05:26,008 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-06-13T14:05:26,010 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-06-13T14:05:26,013 creating build/lib/omicverse/llm/UCE/data_proc 2026-06-13T14:05:26,014 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-13T14:05:26,017 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-13T14:05:26,020 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-13T14:05:26,022 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-13T14:05:26,025 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-06-13T14:05:26,028 creating build/lib/omicverse/llm/domain_research/retrievers 2026-06-13T14:05:26,029 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-06-13T14:05:26,032 creating build/lib/omicverse/llm/domain_research/write 2026-06-13T14:05:26,033 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-06-13T14:05:26,036 creating build/lib/omicverse/pp/_scrublet_backend 2026-06-13T14:05:26,037 copying omicverse/pp/_scrublet_backend/helper_functions.py -> build/lib/omicverse/pp/_scrublet_backend 2026-06-13T14:05:26,041 copying omicverse/pp/_scrublet_backend/scrublet.py -> build/lib/omicverse/pp/_scrublet_backend 2026-06-13T14:05:26,045 copying omicverse/pp/_scrublet_backend/__init__.py -> build/lib/omicverse/pp/_scrublet_backend 2026-06-13T14:05:26,048 creating build/lib/omicverse/pp/experimental 2026-06-13T14:05:26,050 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-06-13T14:05:26,053 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-06-13T14:05:26,056 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-06-13T14:05:26,059 creating build/lib/omicverse/pp/ambient 2026-06-13T14:05:26,060 copying omicverse/pp/ambient/_diagnostics.py -> build/lib/omicverse/pp/ambient 2026-06-13T14:05:26,063 copying omicverse/pp/ambient/_plotting.py -> build/lib/omicverse/pp/ambient 2026-06-13T14:05:26,066 copying omicverse/pp/ambient/__init__.py -> build/lib/omicverse/pp/ambient 2026-06-13T14:05:26,069 copying omicverse/pp/ambient/_ambient.py -> build/lib/omicverse/pp/ambient 2026-06-13T14:05:26,074 creating build/lib/omicverse/single/_metacell_backends 2026-06-13T14:05:26,076 copying omicverse/single/_metacell_backends/supercell_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-13T14:05:26,079 copying omicverse/single/_metacell_backends/kmeans_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-13T14:05:26,082 copying omicverse/single/_metacell_backends/seacells_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-13T14:05:26,087 copying omicverse/single/_metacell_backends/mc2_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-13T14:05:26,305 copying omicverse/single/_metacell_backends/__init__.py -> build/lib/omicverse/single/_metacell_backends 2026-06-13T14:05:26,308 copying omicverse/single/_metacell_backends/geosketch_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-13T14:05:26,310 copying omicverse/single/_metacell_backends/base.py -> build/lib/omicverse/single/_metacell_backends 2026-06-13T14:05:26,313 copying omicverse/single/_metacell_backends/random_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-13T14:05:26,315 copying omicverse/single/_metacell_backends/metaq_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-06-13T14:05:26,319 creating build/lib/omicverse/single/ev 2026-06-13T14:05:26,320 copying omicverse/single/ev/_report.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,323 copying omicverse/single/ev/_cluster.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,326 copying omicverse/single/ev/plotting.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,328 copying omicverse/single/ev/_markers.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,331 copying omicverse/single/ev/_annotate.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,334 copying omicverse/single/ev/__init__.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,337 copying omicverse/single/ev/_pseudobulk.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,340 copying omicverse/single/ev/_preprocess.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,342 copying omicverse/single/ev/_coloc.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,345 copying omicverse/single/ev/io.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,348 copying omicverse/single/ev/_qc.py -> build/lib/omicverse/single/ev 2026-06-13T14:05:26,352 creating build/lib/omicverse/single/templates 2026-06-13T14:05:26,353 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-06-13T14:05:26,355 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-06-13T14:05:26,359 creating build/lib/omicverse/utils/harness 2026-06-13T14:05:26,360 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-06-13T14:05:26,363 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-06-13T14:05:26,365 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-06-13T14:05:26,367 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-06-13T14:05:26,370 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-06-13T14:05:26,373 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-06-13T14:05:26,377 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-06-13T14:05:26,380 creating build/lib/omicverse/utils/gpuex 2026-06-13T14:05:26,382 copying omicverse/utils/gpuex/scipy.py -> build/lib/omicverse/utils/gpuex 2026-06-13T14:05:26,385 copying omicverse/utils/gpuex/__init__.py -> build/lib/omicverse/utils/gpuex 2026-06-13T14:05:26,389 creating build/lib/omicverse/utils/biocontext 2026-06-13T14:05:26,391 copying omicverse/utils/biocontext/_client.py -> build/lib/omicverse/utils/biocontext 2026-06-13T14:05:26,394 copying omicverse/utils/biocontext/__init__.py -> build/lib/omicverse/utils/biocontext 2026-06-13T14:05:26,396 copying omicverse/utils/biocontext/_tools.py -> build/lib/omicverse/utils/biocontext 2026-06-13T14:05:26,401 creating build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,403 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,407 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,410 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,413 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,416 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,419 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,422 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,425 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,428 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,432 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,435 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,438 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,441 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-06-13T14:05:26,445 creating build/lib/omicverse/utils/verifier 2026-06-13T14:05:26,447 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-06-13T14:05:26,450 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-06-13T14:05:26,453 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-06-13T14:05:26,456 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-06-13T14:05:26,459 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-06-13T14:05:26,462 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-06-13T14:05:26,465 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-06-13T14:05:26,467 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-06-13T14:05:26,470 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-06-13T14:05:26,475 creating build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,476 copying omicverse/utils/ovagent/codegen_tool_facade.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,479 copying omicverse/utils/ovagent/tool_runtime_exec.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,482 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,486 copying omicverse/utils/ovagent/session_facade.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,489 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,492 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,496 copying omicverse/utils/ovagent/permission_policy.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,499 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,503 copying omicverse/utils/ovagent/analysis_sandbox.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,507 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,510 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,513 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,516 copying omicverse/utils/ovagent/analysis_transformer.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,519 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,521 copying omicverse/utils/ovagent/prompt_templates.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,524 copying omicverse/utils/ovagent/tool_runtime_io.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,528 copying omicverse/utils/ovagent/turn_artifacts.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,531 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,535 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,539 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,542 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,545 copying omicverse/utils/ovagent/tool_runtime_web.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,548 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,551 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,555 copying omicverse/utils/ovagent/context_budget.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,558 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,561 copying omicverse/utils/ovagent/analysis_diagnostics.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,564 copying omicverse/utils/ovagent/turn_followup.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,567 copying omicverse/utils/ovagent/tool_runtime_workspace.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,571 copying omicverse/utils/ovagent/tool_registry.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,574 copying omicverse/utils/ovagent/tool_scheduler.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,577 copying omicverse/utils/ovagent/event_stream.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,580 copying omicverse/utils/ovagent/repair_loop.py -> build/lib/omicverse/utils/ovagent 2026-06-13T14:05:26,583 creating build/lib/omicverse/utils/gpuex/umap 2026-06-13T14:05:26,584 copying omicverse/utils/gpuex/umap/__init__.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-13T14:05:26,586 copying omicverse/utils/gpuex/umap/_ab.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-13T14:05:26,588 copying omicverse/utils/gpuex/umap/_embedding.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-13T14:05:26,590 copying omicverse/utils/gpuex/umap/_sgd_mlx.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-13T14:05:26,592 copying omicverse/utils/gpuex/umap/_sgd.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-13T14:05:26,595 copying omicverse/utils/gpuex/umap/_init.py -> build/lib/omicverse/utils/gpuex/umap 2026-06-13T14:05:26,597 creating build/lib/omicverse/space/histo 2026-06-13T14:05:26,598 copying omicverse/space/histo/_stpath.py -> build/lib/omicverse/space/histo 2026-06-13T14:05:26,601 copying omicverse/space/histo/_stflow.py -> build/lib/omicverse/space/histo 2026-06-13T14:05:26,603 copying omicverse/space/histo/_istar.py -> build/lib/omicverse/space/histo 2026-06-13T14:05:26,606 copying omicverse/space/histo/_demo.py -> build/lib/omicverse/space/histo 2026-06-13T14:05:26,608 copying omicverse/space/histo/_io.py -> build/lib/omicverse/space/histo 2026-06-13T14:05:26,610 copying omicverse/space/histo/__init__.py -> build/lib/omicverse/space/histo 2026-06-13T14:05:26,613 copying omicverse/space/histo/_dispatch.py -> build/lib/omicverse/space/histo 2026-06-13T14:05:26,615 copying omicverse/space/histo/_hest_fm.py -> build/lib/omicverse/space/histo 2026-06-13T14:05:26,618 copying omicverse/space/histo/_embed.py -> build/lib/omicverse/space/histo 2026-06-13T14:05:26,621 creating build/lib/omicverse/mcp/adapters 2026-06-13T14:05:26,621 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-06-13T14:05:26,624 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-06-13T14:05:26,627 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-06-13T14:05:26,629 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-06-13T14:05:26,631 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-06-13T14:05:26,634 creating build/lib/omicverse/jarvis/runtime 2026-06-13T14:05:26,635 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-06-13T14:05:26,637 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-06-13T14:05:26,640 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-06-13T14:05:26,642 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-06-13T14:05:26,644 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-06-13T14:05:26,646 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-06-13T14:05:26,648 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-06-13T14:05:26,651 creating build/lib/omicverse/jarvis/memory 2026-06-13T14:05:26,652 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-06-13T14:05:26,654 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-06-13T14:05:26,657 creating build/lib/omicverse/jarvis/channels 2026-06-13T14:05:26,658 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-06-13T14:05:26,661 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-06-13T14:05:26,664 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-06-13T14:05:26,667 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-06-13T14:05:26,670 copying omicverse/jarvis/channels/channel_core.py -> build/lib/omicverse/jarvis/channels 2026-06-13T14:05:26,673 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-06-13T14:05:26,675 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-06-13T14:05:26,677 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-06-13T14:05:26,681 creating build/lib/omicverse/jarvis/gateway 2026-06-13T14:05:26,682 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-06-13T14:05:26,684 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-06-13T14:05:26,686 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-06-13T14:05:26,689 creating build/lib/omicverse/io/single 2026-06-13T14:05:26,690 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-06-13T14:05:26,692 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-06-13T14:05:26,695 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-06-13T14:05:26,697 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-06-13T14:05:26,700 creating build/lib/omicverse/io/bulk 2026-06-13T14:05:26,701 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-06-13T14:05:26,703 creating build/lib/omicverse/io/spatial 2026-06-13T14:05:26,704 copying omicverse/io/spatial/_xenium.py -> build/lib/omicverse/io/spatial 2026-06-13T14:05:26,707 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-06-13T14:05:26,710 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-06-13T14:05:26,712 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-06-13T14:05:26,714 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-06-13T14:05:26,717 copying omicverse/io/spatial/_atera.py -> build/lib/omicverse/io/spatial 2026-06-13T14:05:26,720 creating build/lib/omicverse/io/general 2026-06-13T14:05:26,721 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-06-13T14:05:26,724 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-06-13T14:05:26,726 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-06-13T14:05:26,728 creating build/lib/omicverse/bulk/_alignment 2026-06-13T14:05:26,729 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-06-13T14:05:26,732 creating build/lib/omicverse/external/GraphST 2026-06-13T14:05:26,733 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-06-13T14:05:26,735 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-06-13T14:05:26,738 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-06-13T14:05:26,740 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-06-13T14:05:26,742 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-06-13T14:05:26,745 creating build/lib/omicverse/external/tape 2026-06-13T14:05:26,746 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-06-13T14:05:26,748 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-06-13T14:05:26,751 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-06-13T14:05:26,753 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-06-13T14:05:26,755 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-06-13T14:05:26,757 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-06-13T14:05:26,760 creating build/lib/omicverse/external/nocd 2026-06-13T14:05:26,760 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-06-13T14:05:26,763 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-06-13T14:05:26,765 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-06-13T14:05:26,767 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-06-13T14:05:26,769 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-06-13T14:05:26,771 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-06-13T14:05:26,774 creating build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,775 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,777 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,779 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,781 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,784 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,786 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,788 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,790 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,793 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,795 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,797 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,799 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,802 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,805 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,807 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-06-13T14:05:26,810 creating build/lib/omicverse/external/PROST 2026-06-13T14:05:26,811 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-06-13T14:05:26,814 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-06-13T14:05:26,816 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-06-13T14:05:26,819 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-06-13T14:05:26,822 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-06-13T14:05:26,824 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-06-13T14:05:26,826 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-06-13T14:05:26,829 creating build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,830 copying omicverse/external/pyensembl/ensembl_release.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,832 copying omicverse/external/pyensembl/ensembl_url_templates.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,835 copying omicverse/external/pyensembl/species.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,837 copying omicverse/external/pyensembl/ensembl_versions.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,839 copying omicverse/external/pyensembl/normalization.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,840 copying omicverse/external/pyensembl/common.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,842 copying omicverse/external/pyensembl/download_cache.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,845 copying omicverse/external/pyensembl/version.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,847 copying omicverse/external/pyensembl/sequence_data.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,849 copying omicverse/external/pyensembl/shell.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,851 copying omicverse/external/pyensembl/database.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,854 copying omicverse/external/pyensembl/__init__.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,855 copying omicverse/external/pyensembl/reference_name.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,857 copying omicverse/external/pyensembl/transcript.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,860 copying omicverse/external/pyensembl/exon.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,862 copying omicverse/external/pyensembl/search.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,864 copying omicverse/external/pyensembl/gene.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,865 copying omicverse/external/pyensembl/genome.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,868 copying omicverse/external/pyensembl/locus.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,871 copying omicverse/external/pyensembl/serializable.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,873 copying omicverse/external/pyensembl/fasta.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,876 copying omicverse/external/pyensembl/locus_with_genome.py -> build/lib/omicverse/external/pyensembl 2026-06-13T14:05:26,878 creating build/lib/omicverse/external/gaston 2026-06-13T14:05:26,879 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,882 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,884 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,886 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,888 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,890 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,892 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,895 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,897 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,899 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,901 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,903 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,905 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,907 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,909 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,911 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-06-13T14:05:26,914 creating build/lib/omicverse/external/graphvelo 2026-06-13T14:05:26,915 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-06-13T14:05:26,917 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-06-13T14:05:26,920 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-06-13T14:05:26,923 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-06-13T14:05:26,925 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-06-13T14:05:26,927 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-06-13T14:05:26,929 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-06-13T14:05:26,932 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-06-13T14:05:26,935 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-06-13T14:05:26,937 creating build/lib/omicverse/external/flowsig 2026-06-13T14:05:26,938 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-06-13T14:05:26,941 creating build/lib/omicverse/external/scSLAT 2026-06-13T14:05:26,942 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-06-13T14:05:26,944 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-06-13T14:05:26,946 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-06-13T14:05:26,949 creating build/lib/omicverse/external/py_scmetabolism 2026-06-13T14:05:26,950 copying omicverse/external/py_scmetabolism/methods.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-13T14:05:26,953 copying omicverse/external/py_scmetabolism/compute.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-13T14:05:26,955 copying omicverse/external/py_scmetabolism/visualize.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-13T14:05:26,958 copying omicverse/external/py_scmetabolism/__init__.py -> build/lib/omicverse/external/py_scmetabolism 2026-06-13T14:05:26,960 creating build/lib/omicverse/external/geosketch 2026-06-13T14:05:26,961 copying omicverse/external/geosketch/utils.py -> build/lib/omicverse/external/geosketch 2026-06-13T14:05:26,964 copying omicverse/external/geosketch/kmeanspp.py -> build/lib/omicverse/external/geosketch 2026-06-13T14:05:26,966 copying omicverse/external/geosketch/sketch.py -> build/lib/omicverse/external/geosketch 2026-06-13T14:05:26,968 copying omicverse/external/geosketch/__init__.py -> build/lib/omicverse/external/geosketch 2026-06-13T14:05:26,971 creating build/lib/omicverse/external/scanorama 2026-06-13T14:05:26,972 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-06-13T14:05:26,974 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-06-13T14:05:26,977 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-06-13T14:05:26,979 creating build/lib/omicverse/external/mofapy2 2026-06-13T14:05:26,980 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-06-13T14:05:26,982 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-06-13T14:05:26,984 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-06-13T14:05:26,986 creating build/lib/omicverse/external/somde 2026-06-13T14:05:26,987 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-06-13T14:05:26,990 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-06-13T14:05:26,993 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-06-13T14:05:26,997 creating build/lib/omicverse/external/starfysh 2026-06-13T14:05:26,998 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-06-13T14:05:27,002 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-06-13T14:05:27,005 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-06-13T14:05:27,009 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-06-13T14:05:27,012 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-06-13T14:05:27,015 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-06-13T14:05:27,017 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-06-13T14:05:27,020 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-06-13T14:05:27,024 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-06-13T14:05:27,028 creating build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,029 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,032 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,034 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,036 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,038 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,040 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,042 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,044 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,046 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,048 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,050 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,053 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,055 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,057 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,059 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,062 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,063 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,065 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,067 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,069 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,072 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-06-13T14:05:27,075 creating build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,076 copying omicverse/external/gsmap/_style.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,078 copying omicverse/external/gsmap/_regression_read.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,080 copying omicverse/external/gsmap/spatial_ldsc.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,083 copying omicverse/external/gsmap/latent_to_gene.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,086 copying omicverse/external/gsmap/_visualize.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,089 copying omicverse/external/gsmap/diagnosis.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,091 copying omicverse/external/gsmap/_config.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,094 copying omicverse/external/gsmap/cauchy_combination.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,096 copying omicverse/external/gsmap/_jackknife.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,098 copying omicverse/external/gsmap/__init__.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,100 copying omicverse/external/gsmap/find_latent_representation.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,102 copying omicverse/external/gsmap/generate_ldscore.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,104 copying omicverse/external/gsmap/_manhattan_plot.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,106 copying omicverse/external/gsmap/report.py -> build/lib/omicverse/external/gsmap 2026-06-13T14:05:27,109 creating build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,110 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,113 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,115 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,118 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,120 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,122 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,124 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,126 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,128 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,131 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,133 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,135 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-06-13T14:05:27,138 creating build/lib/omicverse/external/SpatialDE 2026-06-13T14:05:27,139 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-06-13T14:05:27,142 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-06-13T14:05:27,144 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-06-13T14:05:27,146 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-06-13T14:05:27,148 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-06-13T14:05:27,151 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-06-13T14:05:27,153 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-06-13T14:05:27,156 creating build/lib/omicverse/external/ctxcore 2026-06-13T14:05:27,157 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-06-13T14:05:27,159 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-06-13T14:05:27,162 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-06-13T14:05:27,165 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-06-13T14:05:27,166 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-06-13T14:05:27,169 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-06-13T14:05:27,171 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-06-13T14:05:27,174 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-06-13T14:05:27,177 creating build/lib/omicverse/external/bin2cell 2026-06-13T14:05:27,178 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-06-13T14:05:27,183 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-06-13T14:05:27,185 creating build/lib/omicverse/external/datacollect 2026-06-13T14:05:27,186 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-06-13T14:05:27,189 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-06-13T14:05:27,192 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-06-13T14:05:27,195 creating build/lib/omicverse/external/torch_pca 2026-06-13T14:05:27,196 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-06-13T14:05:27,199 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-06-13T14:05:27,201 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-06-13T14:05:27,202 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-06-13T14:05:27,205 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-06-13T14:05:27,207 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-06-13T14:05:27,210 creating build/lib/omicverse/external/cellanova 2026-06-13T14:05:27,211 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-06-13T14:05:27,213 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-06-13T14:05:27,216 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-06-13T14:05:27,218 creating build/lib/omicverse/external/STAGATE_pyG 2026-06-13T14:05:27,219 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-13T14:05:27,222 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-13T14:05:27,224 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-13T14:05:27,226 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-13T14:05:27,229 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-06-13T14:05:27,232 creating build/lib/omicverse/external/BINARY 2026-06-13T14:05:27,233 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-06-13T14:05:27,236 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-06-13T14:05:27,239 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-06-13T14:05:27,241 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-06-13T14:05:27,243 creating build/lib/omicverse/external/scMulan 2026-06-13T14:05:27,244 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-06-13T14:05:27,247 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-06-13T14:05:27,249 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-06-13T14:05:27,252 creating build/lib/omicverse/external/spaco 2026-06-13T14:05:27,253 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-06-13T14:05:27,255 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-06-13T14:05:27,258 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-06-13T14:05:27,260 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-06-13T14:05:27,262 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-06-13T14:05:27,264 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-06-13T14:05:27,266 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-06-13T14:05:27,268 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-06-13T14:05:27,270 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-06-13T14:05:27,273 creating build/lib/omicverse/external/cytotrace2 2026-06-13T14:05:27,274 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-06-13T14:05:27,277 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-06-13T14:05:27,279 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-06-13T14:05:27,282 creating build/lib/omicverse/external/pylimma 2026-06-13T14:05:27,283 copying omicverse/external/pylimma/fit.py -> build/lib/omicverse/external/pylimma 2026-06-13T14:05:27,286 copying omicverse/external/pylimma/__init__.py -> build/lib/omicverse/external/pylimma 2026-06-13T14:05:27,289 creating build/lib/omicverse/external/PyWGCNA 2026-06-13T14:05:27,290 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-06-13T14:05:27,292 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-06-13T14:05:27,295 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-06-13T14:05:27,297 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-06-13T14:05:27,299 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-06-13T14:05:27,306 creating build/lib/omicverse/external/scfea 2026-06-13T14:05:27,307 copying omicverse/external/scfea/__init__.py -> build/lib/omicverse/external/scfea 2026-06-13T14:05:27,309 copying omicverse/external/scfea/scFEA.py -> build/lib/omicverse/external/scfea 2026-06-13T14:05:27,311 copying omicverse/external/scfea/DatasetFlux.py -> build/lib/omicverse/external/scfea 2026-06-13T14:05:27,314 copying omicverse/external/scfea/ClassFlux.py -> build/lib/omicverse/external/scfea 2026-06-13T14:05:27,316 copying omicverse/external/scfea/util.py -> build/lib/omicverse/external/scfea 2026-06-13T14:05:27,318 creating build/lib/omicverse/external/bulk2single 2026-06-13T14:05:27,319 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-06-13T14:05:27,321 creating build/lib/omicverse/external/cellcharter 2026-06-13T14:05:27,322 copying omicverse/external/cellcharter/_aggr.py -> build/lib/omicverse/external/cellcharter 2026-06-13T14:05:27,324 copying omicverse/external/cellcharter/_graph.py -> build/lib/omicverse/external/cellcharter 2026-06-13T14:05:27,326 copying omicverse/external/cellcharter/_gmm.py -> build/lib/omicverse/external/cellcharter 2026-06-13T14:05:27,329 copying omicverse/external/cellcharter/_autok.py -> build/lib/omicverse/external/cellcharter 2026-06-13T14:05:27,331 copying omicverse/external/cellcharter/__init__.py -> build/lib/omicverse/external/cellcharter 2026-06-13T14:05:27,333 copying omicverse/external/cellcharter/_utils.py -> build/lib/omicverse/external/cellcharter 2026-06-13T14:05:27,335 creating build/lib/omicverse/external/umap_pytorch 2026-06-13T14:05:27,336 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-06-13T14:05:27,338 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-06-13T14:05:27,340 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-06-13T14:05:27,342 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-06-13T14:05:27,345 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-06-13T14:05:27,347 copying omicverse/external/umap_pytorch/fuzzy_gpu.py -> build/lib/omicverse/external/umap_pytorch 2026-06-13T14:05:27,350 creating build/lib/omicverse/external/monocle2_py 2026-06-13T14:05:27,351 copying omicverse/external/monocle2_py/utils.py -> build/lib/omicverse/external/monocle2_py 2026-06-13T14:05:27,353 copying omicverse/external/monocle2_py/core.py -> build/lib/omicverse/external/monocle2_py 2026-06-13T14:05:27,356 copying omicverse/external/monocle2_py/clustering.py -> build/lib/omicverse/external/monocle2_py 2026-06-13T14:05:27,358 copying omicverse/external/monocle2_py/ordering.py -> build/lib/omicverse/external/monocle2_py 2026-06-13T14:05:27,361 copying omicverse/external/monocle2_py/ddrtree.py -> build/lib/omicverse/external/monocle2_py 2026-06-13T14:05:27,363 copying omicverse/external/monocle2_py/plotting.py -> build/lib/omicverse/external/monocle2_py 2026-06-13T14:05:27,367 copying omicverse/external/monocle2_py/__init__.py -> build/lib/omicverse/external/monocle2_py 2026-06-13T14:05:27,369 copying omicverse/external/monocle2_py/dimension_reduction.py -> build/lib/omicverse/external/monocle2_py 2026-06-13T14:05:27,371 copying omicverse/external/monocle2_py/differential.py -> build/lib/omicverse/external/monocle2_py 2026-06-13T14:05:27,374 creating build/lib/omicverse/external/CAST 2026-06-13T14:05:27,375 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-06-13T14:05:27,378 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-06-13T14:05:27,381 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-06-13T14:05:27,383 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-06-13T14:05:27,386 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-06-13T14:05:27,388 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-06-13T14:05:27,390 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-06-13T14:05:27,393 creating build/lib/omicverse/external/harmony 2026-06-13T14:05:27,394 copying omicverse/external/harmony/_harmony_cpu.py -> build/lib/omicverse/external/harmony 2026-06-13T14:05:27,397 copying omicverse/external/harmony/_harmony_mlx.py -> build/lib/omicverse/external/harmony 2026-06-13T14:05:27,399 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-06-13T14:05:27,402 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-06-13T14:05:27,404 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-06-13T14:05:27,407 creating build/lib/omicverse/external/tosica 2026-06-13T14:05:27,408 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-06-13T14:05:27,411 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-06-13T14:05:27,413 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-06-13T14:05:27,416 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-06-13T14:05:27,417 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-06-13T14:05:27,421 creating build/lib/omicverse/external/istar 2026-06-13T14:05:27,421 copying omicverse/external/istar/extract_features.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,424 copying omicverse/external/istar/utils.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,426 copying omicverse/external/istar/reduce_dim.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,428 copying omicverse/external/istar/pixannot.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,430 copying omicverse/external/istar/hipt_heatmap_utils.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,432 copying omicverse/external/istar/get_mask.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,434 copying omicverse/external/istar/hipt_model_utils.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,436 copying omicverse/external/istar/impute_by_basic.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,439 copying omicverse/external/istar/connected_components.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,441 copying omicverse/external/istar/train.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,443 copying omicverse/external/istar/aggregate_imputed.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,445 copying omicverse/external/istar/hipt_4k.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,448 copying omicverse/external/istar/impute.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,450 copying omicverse/external/istar/rescale.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,452 copying omicverse/external/istar/vision_transformer.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,455 copying omicverse/external/istar/plot_spots.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,457 copying omicverse/external/istar/structural_similarity.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,459 copying omicverse/external/istar/marker_score.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,461 copying omicverse/external/istar/plot_imputed.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,463 copying omicverse/external/istar/__init__.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,465 copying omicverse/external/istar/reorganize_imputed.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,467 copying omicverse/external/istar/visual.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,469 copying omicverse/external/istar/cluster.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,472 copying omicverse/external/istar/select_genes.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,474 copying omicverse/external/istar/vision_transformer4k.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,476 copying omicverse/external/istar/image.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,479 copying omicverse/external/istar/preprocess.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,481 copying omicverse/external/istar/enrich.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,483 copying omicverse/external/istar/differential.py -> build/lib/omicverse/external/istar 2026-06-13T14:05:27,486 creating build/lib/omicverse/external/scdiffusion 2026-06-13T14:05:27,487 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-06-13T14:05:27,490 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-06-13T14:05:27,492 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-06-13T14:05:27,494 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-06-13T14:05:27,496 creating build/lib/omicverse/external/MetaQ 2026-06-13T14:05:27,497 copying omicverse/external/MetaQ/data_utils.py -> build/lib/omicverse/external/MetaQ 2026-06-13T14:05:27,500 copying omicverse/external/MetaQ/engine.py -> build/lib/omicverse/external/MetaQ 2026-06-13T14:05:27,502 copying omicverse/external/MetaQ/model.py -> build/lib/omicverse/external/MetaQ 2026-06-13T14:05:27,505 copying omicverse/external/MetaQ/__init__.py -> build/lib/omicverse/external/MetaQ 2026-06-13T14:05:27,507 creating build/lib/omicverse/external/CEFCON 2026-06-13T14:05:27,508 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-06-13T14:05:27,511 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-06-13T14:05:27,514 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-06-13T14:05:27,516 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-06-13T14:05:27,519 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-06-13T14:05:27,521 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-06-13T14:05:27,524 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-06-13T14:05:27,525 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-06-13T14:05:27,528 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-06-13T14:05:27,531 creating build/lib/omicverse/external/scTenifold 2026-06-13T14:05:27,532 copying omicverse/external/scTenifold/__init__.py -> build/lib/omicverse/external/scTenifold 2026-06-13T14:05:27,534 copying omicverse/external/scTenifold/__main__.py -> build/lib/omicverse/external/scTenifold 2026-06-13T14:05:27,536 creating build/lib/omicverse/external/STT 2026-06-13T14:05:27,537 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-06-13T14:05:27,540 creating build/lib/omicverse/external/topact 2026-06-13T14:05:27,541 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-06-13T14:05:27,543 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-06-13T14:05:27,546 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-06-13T14:05:27,550 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-06-13T14:05:27,552 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-06-13T14:05:27,554 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-06-13T14:05:27,556 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-06-13T14:05:27,558 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-06-13T14:05:27,560 creating build/lib/omicverse/external/popv 2026-06-13T14:05:27,561 copying omicverse/external/popv/_settings.py -> build/lib/omicverse/external/popv 2026-06-13T14:05:27,564 copying omicverse/external/popv/annotation.py -> build/lib/omicverse/external/popv 2026-06-13T14:05:27,566 copying omicverse/external/popv/__init__.py -> build/lib/omicverse/external/popv 2026-06-13T14:05:27,568 copying omicverse/external/popv/visualization.py -> build/lib/omicverse/external/popv 2026-06-13T14:05:27,570 copying omicverse/external/popv/preprocessing.py -> build/lib/omicverse/external/popv 2026-06-13T14:05:27,573 copying omicverse/external/popv/_utils.py -> build/lib/omicverse/external/popv 2026-06-13T14:05:27,576 creating build/lib/omicverse/external/pyedger 2026-06-13T14:05:27,577 copying omicverse/external/pyedger/core.py -> build/lib/omicverse/external/pyedger 2026-06-13T14:05:27,580 copying omicverse/external/pyedger/__init__.py -> build/lib/omicverse/external/pyedger 2026-06-13T14:05:27,583 creating build/lib/omicverse/external/spaceflow 2026-06-13T14:05:27,584 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-06-13T14:05:27,587 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-06-13T14:05:27,588 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-06-13T14:05:27,590 creating build/lib/omicverse/external/mpl_chord 2026-06-13T14:05:27,591 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-06-13T14:05:27,594 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-06-13T14:05:27,596 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-06-13T14:05:27,599 creating build/lib/omicverse/external/mcRigor 2026-06-13T14:05:27,600 copying omicverse/external/mcRigor/__init__.py -> build/lib/omicverse/external/mcRigor 2026-06-13T14:05:27,602 copying omicverse/external/mcRigor/rigor.py -> build/lib/omicverse/external/mcRigor 2026-06-13T14:05:27,604 creating build/lib/omicverse/external/GNTD 2026-06-13T14:05:27,605 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-06-13T14:05:27,608 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-06-13T14:05:27,610 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-06-13T14:05:27,612 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-06-13T14:05:27,614 creating build/lib/omicverse/external/cnmf 2026-06-13T14:05:27,615 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-06-13T14:05:27,619 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-06-13T14:05:27,622 creating build/lib/omicverse/external/palantir 2026-06-13T14:05:27,623 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,626 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,629 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,631 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,633 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,636 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,638 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,640 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,641 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,646 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,647 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-06-13T14:05:27,650 creating build/lib/omicverse/external/gtfparse 2026-06-13T14:05:27,651 copying omicverse/external/gtfparse/parsing_error.py -> build/lib/omicverse/external/gtfparse 2026-06-13T14:05:27,653 copying omicverse/external/gtfparse/attribute_parsing.py -> build/lib/omicverse/external/gtfparse 2026-06-13T14:05:27,656 copying omicverse/external/gtfparse/read_gtf.py -> build/lib/omicverse/external/gtfparse 2026-06-13T14:05:27,658 copying omicverse/external/gtfparse/__init__.py -> build/lib/omicverse/external/gtfparse 2026-06-13T14:05:27,660 copying omicverse/external/gtfparse/create_missing_features.py -> build/lib/omicverse/external/gtfparse 2026-06-13T14:05:27,663 creating build/lib/omicverse/external/supercell 2026-06-13T14:05:27,664 copying omicverse/external/supercell/supercell.py -> build/lib/omicverse/external/supercell 2026-06-13T14:05:27,666 copying omicverse/external/supercell/__init__.py -> build/lib/omicverse/external/supercell 2026-06-13T14:05:27,668 creating build/lib/omicverse/external/VIA 2026-06-13T14:05:27,669 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-06-13T14:05:27,672 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-06-13T14:05:27,675 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-06-13T14:05:27,680 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-06-13T14:05:27,683 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-06-13T14:05:27,690 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-06-13T14:05:27,696 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-06-13T14:05:27,699 creating build/lib/omicverse/external/spatrio 2026-06-13T14:05:27,699 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-06-13T14:05:27,702 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-06-13T14:05:27,704 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-06-13T14:05:27,706 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-06-13T14:05:27,708 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-06-13T14:05:27,710 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-06-13T14:05:27,713 creating build/lib/omicverse/external/mebocost 2026-06-13T14:05:27,714 copying omicverse/external/mebocost/mebocost.py -> build/lib/omicverse/external/mebocost 2026-06-13T14:05:27,721 copying omicverse/external/mebocost/crosstalk_plots.py -> build/lib/omicverse/external/mebocost 2026-06-13T14:05:27,725 copying omicverse/external/mebocost/fba_handler.py -> build/lib/omicverse/external/mebocost 2026-06-13T14:05:27,727 copying omicverse/external/mebocost/MetEstimator.py -> build/lib/omicverse/external/mebocost 2026-06-13T14:05:27,730 copying omicverse/external/mebocost/__init__.py -> build/lib/omicverse/external/mebocost 2026-06-13T14:05:27,733 copying omicverse/external/mebocost/crosstalk_calculator.py -> build/lib/omicverse/external/mebocost 2026-06-13T14:05:27,735 copying omicverse/external/mebocost/crosstalk_diff.py -> build/lib/omicverse/external/mebocost 2026-06-13T14:05:27,738 creating build/lib/omicverse/external/STAligner 2026-06-13T14:05:27,739 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-06-13T14:05:27,742 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-06-13T14:05:27,744 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-06-13T14:05:27,747 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-06-13T14:05:27,749 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-06-13T14:05:27,753 creating build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,755 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,758 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,760 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,762 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,765 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,767 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,769 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,771 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,773 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,776 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,777 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,780 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,782 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-06-13T14:05:27,784 creating build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,785 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,788 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,790 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,792 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,794 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,797 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,799 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,802 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,804 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,806 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,808 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-06-13T14:05:27,811 creating build/lib/omicverse/external/commot 2026-06-13T14:05:27,812 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-06-13T14:05:27,815 creating build/lib/omicverse/external/forcedirect2 2026-06-13T14:05:27,816 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-06-13T14:05:27,819 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-06-13T14:05:27,821 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-06-13T14:05:27,824 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-06-13T14:05:27,826 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-06-13T14:05:27,827 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-06-13T14:05:27,831 creating build/lib/omicverse/external/NaiveDE 2026-06-13T14:05:27,831 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-06-13T14:05:27,833 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-06-13T14:05:27,835 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-06-13T14:05:27,837 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-06-13T14:05:27,839 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-06-13T14:05:27,841 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-06-13T14:05:27,843 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-06-13T14:05:27,845 creating build/lib/omicverse/external/nocd/metrics 2026-06-13T14:05:27,846 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-06-13T14:05:27,848 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-06-13T14:05:27,850 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-06-13T14:05:27,852 creating build/lib/omicverse/external/nocd/nn 2026-06-13T14:05:27,853 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-06-13T14:05:27,856 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-06-13T14:05:27,857 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-06-13T14:05:27,859 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-06-13T14:05:27,861 creating build/lib/omicverse/external/flowsig/tools 2026-06-13T14:05:27,862 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-06-13T14:05:27,865 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-06-13T14:05:27,867 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-06-13T14:05:27,869 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-06-13T14:05:27,871 creating build/lib/omicverse/external/flowsig/utilities 2026-06-13T14:05:27,872 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-06-13T14:05:27,874 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-06-13T14:05:27,877 creating build/lib/omicverse/external/flowsig/plotting 2026-06-13T14:05:27,878 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-06-13T14:05:27,881 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-06-13T14:05:27,884 creating build/lib/omicverse/external/flowsig/preprocessing 2026-06-13T14:05:27,885 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-13T14:05:27,887 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-13T14:05:27,889 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-13T14:05:27,892 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-13T14:05:27,894 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-13T14:05:27,896 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-06-13T14:05:27,900 creating build/lib/omicverse/external/scSLAT/model 2026-06-13T14:05:27,901 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-06-13T14:05:27,904 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-06-13T14:05:27,906 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-06-13T14:05:27,909 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-06-13T14:05:27,911 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-06-13T14:05:27,913 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-06-13T14:05:27,915 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-06-13T14:05:27,917 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-06-13T14:05:27,919 creating build/lib/omicverse/external/scSLAT/viz 2026-06-13T14:05:27,920 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-06-13T14:05:27,922 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-06-13T14:05:27,924 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-06-13T14:05:27,927 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-06-13T14:05:27,928 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-06-13T14:05:27,930 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-06-13T14:05:27,933 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-06-13T14:05:27,935 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-06-13T14:05:27,936 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-06-13T14:05:27,938 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-06-13T14:05:27,940 creating build/lib/omicverse/external/single/arboreto 2026-06-13T14:05:27,942 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-06-13T14:05:27,944 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-06-13T14:05:27,947 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-06-13T14:05:27,949 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-06-13T14:05:27,951 creating build/lib/omicverse/external/mofapy2/run 2026-06-13T14:05:27,952 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-06-13T14:05:27,956 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-06-13T14:05:27,958 creating build/lib/omicverse/external/mofapy2/build_model 2026-06-13T14:05:27,959 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-13T14:05:27,961 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-13T14:05:27,964 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-13T14:05:27,966 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-13T14:05:27,968 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-13T14:05:27,971 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-06-13T14:05:27,973 creating build/lib/omicverse/external/mofapy2/simulate 2026-06-13T14:05:27,974 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-06-13T14:05:27,975 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-06-13T14:05:27,978 creating build/lib/omicverse/external/mofapy2/core 2026-06-13T14:05:27,979 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-06-13T14:05:27,981 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-06-13T14:05:27,984 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-06-13T14:05:27,988 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-06-13T14:05:27,990 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-06-13T14:05:27,993 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:27,994 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:27,997 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,000 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,003 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,005 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,008 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,010 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,012 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,014 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,016 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,019 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,021 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,024 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,026 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,028 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,030 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,032 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,034 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:28,037 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,039 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,041 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,043 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,046 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,048 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,050 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,051 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,054 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,055 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,058 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,060 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:28,063 creating build/lib/omicverse/external/latentvelo/tools 2026-06-13T14:05:28,064 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-13T14:05:28,066 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-13T14:05:28,068 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-13T14:05:28,070 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-13T14:05:28,072 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-06-13T14:05:28,074 creating build/lib/omicverse/external/latentvelo/models 2026-06-13T14:05:28,075 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-13T14:05:28,078 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-06-13T14:05:28,080 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-06-13T14:05:28,082 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-13T14:05:28,086 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-13T14:05:28,089 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-06-13T14:05:28,090 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-06-13T14:05:28,094 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-06-13T14:05:28,096 creating build/lib/omicverse/external/latentvelo/plotting 2026-06-13T14:05:28,097 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-06-13T14:05:28,100 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-06-13T14:05:28,102 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-06-13T14:05:28,105 creating build/lib/omicverse/external/latentvelo/evaluation 2026-06-13T14:05:28,106 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-06-13T14:05:28,108 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-06-13T14:05:28,110 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-06-13T14:05:28,113 creating build/lib/omicverse/external/space/cell2location 2026-06-13T14:05:28,115 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-06-13T14:05:28,118 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-06-13T14:05:28,120 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-06-13T14:05:28,121 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-06-13T14:05:28,123 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-06-13T14:05:28,126 creating build/lib/omicverse/external/space/cell2location/utils 2026-06-13T14:05:28,127 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-06-13T14:05:28,129 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-06-13T14:05:28,131 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-06-13T14:05:28,134 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-13T14:05:28,135 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-13T14:05:28,137 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-13T14:05:28,139 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-13T14:05:28,141 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-06-13T14:05:28,144 creating build/lib/omicverse/external/space/cell2location/models 2026-06-13T14:05:28,145 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-13T14:05:28,148 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-13T14:05:28,151 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-13T14:05:28,153 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-13T14:05:28,155 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-06-13T14:05:28,158 creating build/lib/omicverse/external/space/cell2location/distributions 2026-06-13T14:05:28,159 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-13T14:05:28,162 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-13T14:05:28,165 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-13T14:05:28,168 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-13T14:05:28,169 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-06-13T14:05:28,171 creating build/lib/omicverse/external/space/cell2location/nn 2026-06-13T14:05:28,172 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-06-13T14:05:28,175 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-06-13T14:05:28,177 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-06-13T14:05:28,180 creating build/lib/omicverse/external/space/cell2location/plt 2026-06-13T14:05:28,181 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-13T14:05:28,184 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-13T14:05:28,186 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-13T14:05:28,188 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-13T14:05:28,190 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-13T14:05:28,193 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-13T14:05:28,195 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-13T14:05:28,197 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-06-13T14:05:28,200 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-13T14:05:28,201 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-13T14:05:28,203 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-13T14:05:28,205 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-06-13T14:05:28,208 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-06-13T14:05:28,209 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-06-13T14:05:28,212 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-06-13T14:05:28,214 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-06-13T14:05:28,217 creating build/lib/omicverse/external/space/cell2location/models/base 2026-06-13T14:05:28,218 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-13T14:05:28,220 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-13T14:05:28,223 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-13T14:05:28,224 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-13T14:05:28,227 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-06-13T14:05:28,230 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-13T14:05:28,231 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-13T14:05:28,233 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-13T14:05:28,236 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-06-13T14:05:28,238 creating build/lib/omicverse/external/gsmap/gnn 2026-06-13T14:05:28,239 copying omicverse/external/gsmap/gnn/train.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-13T14:05:28,242 copying omicverse/external/gsmap/gnn/adjacency_matrix.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-13T14:05:28,244 copying omicverse/external/gsmap/gnn/model.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-13T14:05:28,246 copying omicverse/external/gsmap/gnn/__init__.py -> build/lib/omicverse/external/gsmap/gnn 2026-06-13T14:05:28,249 creating build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,250 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,253 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,255 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,257 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,268 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,270 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,273 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,275 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,277 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,279 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,282 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,284 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,286 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,289 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,292 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,294 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,297 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,299 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,302 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,304 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,306 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,309 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,311 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,314 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,316 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,318 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,320 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,323 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,325 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,327 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,330 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,332 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,334 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,337 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-06-13T14:05:28,341 creating build/lib/omicverse/external/datacollect/utils 2026-06-13T14:05:28,342 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-06-13T14:05:28,344 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-06-13T14:05:28,346 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-06-13T14:05:28,349 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-06-13T14:05:28,351 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-06-13T14:05:28,353 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-06-13T14:05:28,356 creating build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,358 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,360 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,363 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,365 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,367 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,370 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,372 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,374 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,377 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,379 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,381 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,384 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,387 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,390 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,393 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,395 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,397 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,400 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,401 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,404 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,406 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,409 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-06-13T14:05:28,411 creating build/lib/omicverse/external/datacollect/config 2026-06-13T14:05:28,413 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-06-13T14:05:28,415 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-06-13T14:05:28,417 creating build/lib/omicverse/external/datacollect/api/proteins 2026-06-13T14:05:28,418 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-13T14:05:28,420 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-13T14:05:28,423 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-13T14:05:28,425 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-13T14:05:28,428 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-13T14:05:28,430 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-13T14:05:28,432 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-06-13T14:05:28,435 creating build/lib/omicverse/external/datacollect/api/pathways 2026-06-13T14:05:28,436 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-13T14:05:28,439 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-13T14:05:28,441 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-13T14:05:28,443 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-06-13T14:05:28,446 creating build/lib/omicverse/external/datacollect/api/expression 2026-06-13T14:05:28,447 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-13T14:05:28,450 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-13T14:05:28,452 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-13T14:05:28,455 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-13T14:05:28,457 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-13T14:05:28,459 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-06-13T14:05:28,462 creating build/lib/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:28,463 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:28,466 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:28,468 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:28,471 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:28,473 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:28,475 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:28,478 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:28,480 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:28,483 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:28,486 creating build/lib/omicverse/external/datacollect/api/genomics 2026-06-13T14:05:28,487 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-13T14:05:28,489 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-13T14:05:28,492 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-13T14:05:28,494 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-13T14:05:28,497 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-13T14:05:28,499 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-13T14:05:28,501 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-13T14:05:28,504 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-06-13T14:05:28,506 creating build/lib/omicverse/external/scMulan/utils 2026-06-13T14:05:28,507 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-06-13T14:05:28,510 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-06-13T14:05:28,513 creating build/lib/omicverse/external/scMulan/model 2026-06-13T14:05:28,514 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-06-13T14:05:28,517 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-06-13T14:05:28,522 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-13T14:05:28,525 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-13T14:05:28,529 creating build/lib/omicverse/external/spaco/external 2026-06-13T14:05:28,530 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-06-13T14:05:28,533 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-06-13T14:05:28,536 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,537 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,541 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,544 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,547 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,550 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,552 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,555 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,557 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,560 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,562 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:28,565 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,566 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,568 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,571 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,573 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,575 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,577 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,580 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,582 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,583 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,585 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,588 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,590 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:28,593 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:28,594 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:28,596 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:28,599 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:28,600 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:28,603 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:28,606 creating build/lib/omicverse/external/CAST/model 2026-06-13T14:05:28,607 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-06-13T14:05:28,609 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-06-13T14:05:28,611 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-06-13T14:05:28,614 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,615 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,617 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,619 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,621 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,623 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,625 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,627 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,629 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,631 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,634 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,636 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,638 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,640 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,644 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,648 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,650 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,652 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,655 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:28,657 creating build/lib/omicverse/external/scdiffusion/VAE 2026-06-13T14:05:28,659 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-06-13T14:05:28,662 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-06-13T14:05:28,663 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-06-13T14:05:28,666 creating build/lib/omicverse/external/CEFCON/resources 2026-06-13T14:05:28,667 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-06-13T14:05:28,670 creating build/lib/omicverse/external/scTenifold/plotting 2026-06-13T14:05:28,670 copying omicverse/external/scTenifold/plotting/_dim_reduction.py -> build/lib/omicverse/external/scTenifold/plotting 2026-06-13T14:05:28,673 copying omicverse/external/scTenifold/plotting/_plotting.py -> build/lib/omicverse/external/scTenifold/plotting 2026-06-13T14:05:28,676 copying omicverse/external/scTenifold/plotting/__init__.py -> build/lib/omicverse/external/scTenifold/plotting 2026-06-13T14:05:28,678 creating build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,679 copying omicverse/external/scTenifold/core/_decomposition.py -> build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,681 copying omicverse/external/scTenifold/core/_ko.py -> build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,683 copying omicverse/external/scTenifold/core/_norm.py -> build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,685 copying omicverse/external/scTenifold/core/_api.py -> build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,687 copying omicverse/external/scTenifold/core/_base.py -> build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,690 copying omicverse/external/scTenifold/core/_QC.py -> build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,692 copying omicverse/external/scTenifold/core/_types.py -> build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,694 copying omicverse/external/scTenifold/core/__init__.py -> build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,696 copying omicverse/external/scTenifold/core/_networks.py -> build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,698 copying omicverse/external/scTenifold/core/_utils.py -> build/lib/omicverse/external/scTenifold/core 2026-06-13T14:05:28,701 creating build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-13T14:05:28,702 copying omicverse/external/scTenifold/cell_cycle/scoring.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-13T14:05:28,705 copying omicverse/external/scTenifold/cell_cycle/UCell.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-13T14:05:28,707 copying omicverse/external/scTenifold/cell_cycle/__init__.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-06-13T14:05:28,709 creating build/lib/omicverse/external/STT/tl 2026-06-13T14:05:28,710 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-06-13T14:05:28,712 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-06-13T14:05:28,714 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-06-13T14:05:28,716 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-06-13T14:05:28,719 creating build/lib/omicverse/external/STT/pl 2026-06-13T14:05:28,721 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-06-13T14:05:28,723 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-06-13T14:05:28,725 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-06-13T14:05:28,728 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-06-13T14:05:28,731 creating build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,732 copying omicverse/external/popv/algorithms/_bbknn.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,735 copying omicverse/external/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,737 copying omicverse/external/popv/algorithms/_svm.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,740 copying omicverse/external/popv/algorithms/_harmony.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,742 copying omicverse/external/popv/algorithms/_celltypist.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,744 copying omicverse/external/popv/algorithms/_rf.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,747 copying omicverse/external/popv/algorithms/_scvi.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,749 copying omicverse/external/popv/algorithms/_scanvi.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,751 copying omicverse/external/popv/algorithms/_onclass.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,754 copying omicverse/external/popv/algorithms/_scanorama.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,756 copying omicverse/external/popv/algorithms/__init__.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,758 copying omicverse/external/popv/algorithms/_xgboost.py -> build/lib/omicverse/external/popv/algorithms 2026-06-13T14:05:28,760 creating build/lib/omicverse/external/popv/hub 2026-06-13T14:05:28,762 copying omicverse/external/popv/hub/_get_metrics.py -> build/lib/omicverse/external/popv/hub 2026-06-13T14:05:28,764 copying omicverse/external/popv/hub/_model.py -> build/lib/omicverse/external/popv/hub 2026-06-13T14:05:28,766 copying omicverse/external/popv/hub/__init__.py -> build/lib/omicverse/external/popv/hub 2026-06-13T14:05:28,768 copying omicverse/external/popv/hub/_metadata.py -> build/lib/omicverse/external/popv/hub 2026-06-13T14:05:28,770 copying omicverse/external/popv/hub/_template.py -> build/lib/omicverse/external/popv/hub 2026-06-13T14:05:28,774 creating build/lib/omicverse/external/commot/_utils 2026-06-13T14:05:28,775 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-06-13T14:05:28,778 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-06-13T14:05:28,780 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-06-13T14:05:28,783 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-06-13T14:05:28,785 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-06-13T14:05:28,787 creating build/lib/omicverse/external/commot/tools 2026-06-13T14:05:28,788 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-06-13T14:05:28,791 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-06-13T14:05:28,795 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-06-13T14:05:28,797 creating build/lib/omicverse/external/commot/plotting 2026-06-13T14:05:28,798 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-06-13T14:05:28,801 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-06-13T14:05:28,804 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-06-13T14:05:28,806 creating build/lib/omicverse/external/commot/preprocessing 2026-06-13T14:05:28,807 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-06-13T14:05:28,810 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-06-13T14:05:28,812 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-06-13T14:05:28,815 creating build/lib/omicverse/external/commot/_optimal_transport 2026-06-13T14:05:28,816 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-13T14:05:28,818 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-13T14:05:28,821 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-13T14:05:28,823 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-13T14:05:28,825 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-06-13T14:05:28,829 creating build/lib/omicverse/pl/_data 2026-06-13T14:05:28,830 copying omicverse/pl/_data/generate_centromeres.py -> build/lib/omicverse/pl/_data 2026-06-13T14:05:28,832 creating build/lib/omicverse/datasets/data_files 2026-06-13T14:05:28,833 copying omicverse/datasets/data_files/smoothDatakNN.py -> build/lib/omicverse/datasets/data_files 2026-06-13T14:05:28,837 running egg_info 2026-06-13T14:05:28,848 writing omicverse.egg-info/PKG-INFO 2026-06-13T14:05:28,883 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-06-13T14:05:28,885 writing entry points to omicverse.egg-info/entry_points.txt 2026-06-13T14:05:28,904 writing requirements to omicverse.egg-info/requires.txt 2026-06-13T14:05:28,906 writing top-level names to omicverse.egg-info/top_level.txt 2026-06-13T14:05:29,137 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-13T14:05:29,230 reading manifest template 'MANIFEST.in' 2026-06-13T14:05:30,518 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-06-13T14:05:32,553 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-06-13T14:05:33,343 warning: no files found matching '*.yml' under directory 'omicverse' 2026-06-13T14:05:39,382 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-06-13T14:05:39,994 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-06-13T14:05:40,733 warning: no files found matching '*.svg' under directory 'omicverse' 2026-06-13T14:05:41,514 warning: no files found matching '*.ico' under directory 'omicverse' 2026-06-13T14:05:42,319 warning: no files found matching '*.db' under directory 'omicverse' 2026-06-13T14:05:43,099 warning: no files found matching '*.npz' under directory 'omicverse' 2026-06-13T14:05:43,903 warning: no files found matching '*.gz' under directory 'omicverse' 2026-06-13T14:05:43,909 no previously-included directories found matching '.git' 2026-06-13T14:05:43,915 no previously-included directories found matching '.github' 2026-06-13T14:05:43,920 no previously-included directories found matching '.claude' 2026-06-13T14:05:43,926 no previously-included directories found matching '.pytest_cache' 2026-06-13T14:05:43,931 no previously-included directories found matching '.ruff_cache' 2026-06-13T14:05:43,936 no previously-included directories found matching '.vscode' 2026-06-13T14:05:43,941 no previously-included directories found matching 'docs' 2026-06-13T14:05:43,946 no previously-included directories found matching 'tests' 2026-06-13T14:05:43,952 no previously-included directories found matching 'OvIntelligence' 2026-06-13T14:05:43,957 no previously-included directories found matching 'READMEM' 2026-06-13T14:05:43,963 no previously-included directories found matching 'omicverse_guide' 2026-06-13T14:05:43,969 no previously-included directories found matching 'omicverse_web' 2026-06-13T14:05:43,974 no previously-included directories found matching 'tmp' 2026-06-13T14:05:43,979 no previously-included directories found matching 'tmp_omicverse' 2026-06-13T14:05:43,984 no previously-included directories found matching 'Skill_Seekers' 2026-06-13T14:05:43,995 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-06-13T14:05:44,005 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-06-13T14:05:44,012 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-06-13T14:05:44,013 adding license file 'LICENSE' 2026-06-13T14:05:44,109 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-06-13T14:05:44,450 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-06-13T14:05:44,453 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-06-13T14:05:44,455 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-06-13T14:05:44,457 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-06-13T14:05:44,461 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-06-13T14:05:44,464 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-06-13T14:05:44,466 copying omicverse/pl/_data/centromere_hg38.csv -> build/lib/omicverse/pl/_data 2026-06-13T14:05:44,468 copying omicverse/pl/_data/centromere_mm10.csv -> build/lib/omicverse/pl/_data 2026-06-13T14:05:44,471 copying omicverse/pl/_data/centromere_hg19.csv -> build/lib/omicverse/pl/_data 2026-06-13T14:05:44,473 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-06-13T14:05:44,479 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-06-13T14:05:44,482 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-06-13T14:05:44,486 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-06-13T14:05:44,488 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-13T14:05:44,510 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-06-13T14:05:44,527 creating build/lib/omicverse/llm/scfoundation/models 2026-06-13T14:05:44,528 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-06-13T14:05:44,531 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-06-13T14:05:44,535 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-06-13T14:05:44,537 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-06-13T14:05:44,540 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-06-13T14:05:44,543 creating build/lib/omicverse/single/templates/img 2026-06-13T14:05:44,544 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-06-13T14:05:44,546 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-06-13T14:05:44,550 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-06-13T14:05:44,555 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-06-13T14:05:44,559 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-06-13T14:05:44,562 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-06-13T14:05:44,564 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-06-13T14:05:44,568 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-06-13T14:05:44,570 copying omicverse/external/istar/NOTICE.md -> build/lib/omicverse/external/istar 2026-06-13T14:05:44,573 copying omicverse/external/istar/README.md -> build/lib/omicverse/external/istar 2026-06-13T14:05:44,576 copying omicverse/external/istar/requirements.txt -> build/lib/omicverse/external/istar 2026-06-13T14:05:44,579 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-06-13T14:05:44,581 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-06-13T14:05:44,583 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-06-13T14:05:44,591 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-06-13T14:05:44,599 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-06-13T14:05:44,607 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-13T14:05:44,608 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-13T14:05:44,631 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-13T14:05:44,652 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-13T14:05:44,670 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-06-13T14:05:44,674 creating build/lib/omicverse/external/gsmap/templates 2026-06-13T14:05:44,675 copying omicverse/external/gsmap/templates/report_template.html -> build/lib/omicverse/external/gsmap/templates 2026-06-13T14:05:44,678 creating build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,680 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,684 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,687 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,691 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,695 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,699 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,703 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,707 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,711 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,715 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,719 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,723 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-06-13T14:05:44,728 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-13T14:05:45,393 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-13T14:05:45,418 creating build/lib/omicverse/external/scfea/data 2026-06-13T14:05:45,420 copying omicverse/external/scfea/data/Human_M168_information.symbols.csv -> build/lib/omicverse/external/scfea/data 2026-06-13T14:05:45,424 copying omicverse/external/scfea/data/cName_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-13T14:05:45,426 copying omicverse/external/scfea/data/cName_complete_mouse_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-13T14:05:45,429 copying omicverse/external/scfea/data/cmMat_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-13T14:05:45,433 copying omicverse/external/scfea/data/cmMat_complete_mouse_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-13T14:05:45,436 copying omicverse/external/scfea/data/module_gene_complete_mouse_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-13T14:05:45,439 copying omicverse/external/scfea/data/module_gene_m168.csv -> build/lib/omicverse/external/scfea/data 2026-06-13T14:05:45,442 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:45,450 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-13T14:05:45,451 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-13T14:05:45,545 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-13T14:05:45,550 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-06-13T14:05:45,557 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-13T14:05:45,559 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-13T14:05:45,562 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-13T14:05:45,565 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-06-13T14:05:45,568 creating build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-06-13T14:05:45,570 copying omicverse/external/mebocost/data/mebocost_db/human/human_met_sensor_update_Oct21_2025.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-06-13T14:05:45,574 copying omicverse/external/mebocost/data/mebocost_db/human/metabolite_associated_gene_reaction_HMDB_summary.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-06-13T14:05:45,593 creating build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-13T14:05:45,594 copying omicverse/external/mebocost/data/mebocost_db/common/hmdb_blood_metabolite_concentration.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-13T14:05:45,596 copying omicverse/external/mebocost/data/mebocost_db/common/human_mouse_homology_gene_pair.csv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-13T14:05:45,604 copying omicverse/external/mebocost/data/mebocost_db/common/metabolite_annotation_HMDB_summary.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-06-13T14:05:45,624 creating build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-13T14:05:45,625 copying omicverse/external/mebocost/data/mebocost_db/mouse/metabolite_associated_gene_reaction_HMDB_summary_mouse.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-13T14:05:45,644 copying omicverse/external/mebocost/data/mebocost_db/mouse/mouse_met_sensor_update_Oct21_2025.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-13T14:05:45,648 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-13T14:05:45,651 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-13T14:05:45,655 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-13T14:05:45,659 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-13T14:05:45,660 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-13T14:05:45,664 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-13T14:05:45,668 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-13T14:05:45,672 copying omicverse/pl/_data/README.md -> build/lib/omicverse/pl/_data 2026-06-13T14:05:45,676 copying omicverse/datasets/data_files/README.md -> build/lib/omicverse/datasets/data_files 2026-06-13T14:05:45,679 copying omicverse/datasets/data_files/features_model_training_17.csv -> build/lib/omicverse/datasets/data_files 2026-06-13T14:05:45,684 copying omicverse/datasets/data_files/human_alias_list.txt -> build/lib/omicverse/datasets/data_files 2026-06-13T14:05:45,686 copying omicverse/datasets/data_files/mart_export.txt -> build/lib/omicverse/datasets/data_files 2026-06-13T14:05:45,759 creating build/lib/omicverse/datasets/data_files/TF 2026-06-13T14:05:45,760 copying omicverse/datasets/data_files/TF/allTFs_human.txt -> build/lib/omicverse/datasets/data_files/TF 2026-06-13T14:05:45,762 copying omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/datasets/data_files/TF 2026-06-13T14:05:45,765 copying omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/datasets/data_files/TF 2026-06-13T14:05:45,775 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/datasets/data_files/TF 2026-06-13T14:05:45,790 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/datasets/data_files/TF 2026-06-13T14:05:45,929 installing to build/bdist.linux-armv7l/wheel 2026-06-13T14:05:45,930 running install 2026-06-13T14:05:45,953 running install_lib 2026-06-13T14:05:45,959 creating build/bdist.linux-armv7l/wheel 2026-06-13T14:05:45,962 creating build/bdist.linux-armv7l/wheel/omicverse 2026-06-13T14:05:45,965 creating build/bdist.linux-armv7l/wheel/omicverse/protein 2026-06-13T14:05:45,966 copying build/lib/omicverse/protein/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,968 copying build/lib/omicverse/protein/_summarize.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,971 copying build/lib/omicverse/protein/_impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,974 copying build/lib/omicverse/protein/_enrich.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,975 copying build/lib/omicverse/protein/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,978 copying build/lib/omicverse/protein/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,980 copying build/lib/omicverse/protein/_design.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,982 copying build/lib/omicverse/protein/_simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,986 copying build/lib/omicverse/protein/_de.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,988 copying build/lib/omicverse/protein/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,991 copying build/lib/omicverse/protein/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-06-13T14:05:45,994 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-06-13T14:05:45,995 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-06-13T14:05:45,997 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-13T14:05:46,000 copying build/lib/omicverse/_oom_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-13T14:05:46,003 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-06-13T14:05:46,005 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-06-13T14:05:46,007 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-06-13T14:05:46,008 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-06-13T14:05:46,011 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-06-13T14:05:46,014 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-06-13T14:05:46,015 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-13T14:05:46,032 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-13T14:05:46,035 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-13T14:05:46,062 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-06-13T14:05:46,064 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-06-13T14:05:46,065 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-13T14:05:46,068 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-13T14:05:46,070 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-13T14:05:46,072 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-13T14:05:46,076 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-13T14:05:46,077 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-06-13T14:05:46,080 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-13T14:05:46,083 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-13T14:05:46,085 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-13T14:05:46,087 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-06-13T14:05:46,089 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-13T14:05:46,091 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-13T14:05:46,093 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-13T14:05:46,095 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-13T14:05:46,098 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-06-13T14:05:46,099 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-13T14:05:46,102 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-13T14:05:46,105 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-06-13T14:05:46,107 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-06-13T14:05:46,109 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-06-13T14:05:46,111 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-06-13T14:05:46,114 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-06-13T14:05:46,116 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,119 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,129 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,134 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-06-13T14:05:46,135 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-06-13T14:05:46,138 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-06-13T14:05:46,140 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-06-13T14:05:46,143 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-06-13T14:05:46,144 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:46,146 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:46,148 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:46,150 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:46,154 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:46,160 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-06-13T14:05:46,166 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-06-13T14:05:46,167 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-13T14:05:46,170 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-13T14:05:46,173 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-13T14:05:46,176 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-13T14:05:46,179 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-13T14:05:46,182 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-06-13T14:05:46,184 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-06-13T14:05:46,185 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-06-13T14:05:46,188 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-06-13T14:05:46,191 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-06-13T14:05:46,192 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-13T14:05:46,196 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-13T14:05:46,199 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-13T14:05:46,203 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-13T14:05:46,205 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-06-13T14:05:46,212 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-06-13T14:05:46,213 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-06-13T14:05:46,215 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-06-13T14:05:46,217 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-06-13T14:05:46,227 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-06-13T14:05:46,228 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-06-13T14:05:46,231 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-06-13T14:05:46,233 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-06-13T14:05:46,242 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-06-13T14:05:46,244 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-13T14:05:46,246 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-13T14:05:46,252 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-13T14:05:46,263 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-06-13T14:05:46,267 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-06-13T14:05:46,269 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-06-13T14:05:46,270 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-06-13T14:05:46,273 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-06-13T14:05:46,275 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-06-13T14:05:46,276 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-06-13T14:05:46,278 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-06-13T14:05:46,280 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-06-13T14:05:46,283 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-06-13T14:05:46,284 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-06-13T14:05:46,286 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-06-13T14:05:46,289 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-06-13T14:05:46,290 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-13T14:05:46,293 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-13T14:05:46,295 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-13T14:05:46,298 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-13T14:05:46,301 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-13T14:05:46,303 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-13T14:05:46,310 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-06-13T14:05:46,311 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-06-13T14:05:46,314 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-13T14:05:46,316 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:46,317 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:46,320 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:46,322 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:46,324 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:46,326 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:46,328 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:46,330 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-06-13T14:05:46,332 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-06-13T14:05:46,335 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-06-13T14:05:46,336 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,340 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,342 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,345 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,348 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,351 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,354 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-06-13T14:05:46,355 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-13T14:05:46,358 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-13T14:05:46,360 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-13T14:05:46,363 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-13T14:05:46,365 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-13T14:05:46,367 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-13T14:05:46,369 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-06-13T14:05:46,370 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,373 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,375 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,377 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,380 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,382 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-06-13T14:05:46,387 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-06-13T14:05:46,389 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-06-13T14:05:46,390 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-06-13T14:05:46,394 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-06-13T14:05:46,396 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-13T14:05:46,398 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-06-13T14:05:46,399 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-06-13T14:05:46,402 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-13T14:05:46,407 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-06-13T14:05:46,408 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-06-13T14:05:46,410 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-06-13T14:05:46,412 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-06-13T14:05:46,414 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-13T14:05:46,416 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-13T14:05:46,418 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-06-13T14:05:46,419 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-06-13T14:05:46,422 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-06-13T14:05:46,424 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-06-13T14:05:46,426 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-13T14:05:46,429 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-06-13T14:05:46,431 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-06-13T14:05:46,433 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-13T14:05:46,436 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-13T14:05:46,439 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-13T14:05:46,441 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-13T14:05:46,444 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-06-13T14:05:46,447 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,454 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,477 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,481 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-06-13T14:05:46,482 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-13T14:05:46,484 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-13T14:05:46,487 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-13T14:05:46,489 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-13T14:05:46,492 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-06-13T14:05:46,494 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-13T14:05:46,497 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-13T14:05:46,500 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-13T14:05:46,503 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-13T14:05:46,505 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-06-13T14:05:46,508 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-13T14:05:46,509 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-06-13T14:05:46,512 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,519 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,527 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,533 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,537 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,541 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-06-13T14:05:46,544 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-06-13T14:05:46,545 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-06-13T14:05:46,547 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-06-13T14:05:46,549 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-06-13T14:05:46,552 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-06-13T14:05:46,553 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-06-13T14:05:46,573 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-06-13T14:05:46,584 creating build/bdist.linux-armv7l/wheel/omicverse/pp/_scrublet_backend 2026-06-13T14:05:46,593 copying build/lib/omicverse/pp/_scrublet_backend/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-06-13T14:05:46,601 copying build/lib/omicverse/pp/_scrublet_backend/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-06-13T14:05:46,605 copying build/lib/omicverse/pp/_scrublet_backend/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-06-13T14:05:46,606 copying build/lib/omicverse/pp/_leiden_gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,610 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-06-13T14:05:46,611 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-06-13T14:05:46,613 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-06-13T14:05:46,616 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-06-13T14:05:46,619 copying build/lib/omicverse/pp/_gpu_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,622 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,624 copying build/lib/omicverse/pp/_champ.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,627 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,630 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,633 copying build/lib/omicverse/pp/_doubletfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,636 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,638 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,641 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,644 copying build/lib/omicverse/pp/_tsne_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,647 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,651 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,656 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,661 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,666 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,673 creating build/bdist.linux-armv7l/wheel/omicverse/pp/ambient 2026-06-13T14:05:46,675 copying build/lib/omicverse/pp/ambient/_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-13T14:05:46,681 copying build/lib/omicverse/pp/ambient/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-13T14:05:46,687 copying build/lib/omicverse/pp/ambient/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-13T14:05:46,692 copying build/lib/omicverse/pp/ambient/_ambient.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-06-13T14:05:46,696 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,701 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,708 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,716 copying build/lib/omicverse/pp/_scdblfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,723 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,730 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,743 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,757 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,763 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,773 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,782 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-06-13T14:05:46,799 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-06-13T14:05:46,802 copying build/lib/omicverse/single/_autoresolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,812 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,822 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,831 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,841 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,846 copying build/lib/omicverse/single/_liana.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,848 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,851 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,855 creating build/bdist.linux-armv7l/wheel/omicverse/single/_metacell_backends 2026-06-13T14:05:46,856 copying build/lib/omicverse/single/_metacell_backends/supercell_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-13T14:05:46,859 copying build/lib/omicverse/single/_metacell_backends/kmeans_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-13T14:05:46,861 copying build/lib/omicverse/single/_metacell_backends/seacells_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-13T14:05:46,864 copying build/lib/omicverse/single/_metacell_backends/mc2_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-13T14:05:46,866 copying build/lib/omicverse/single/_metacell_backends/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-13T14:05:46,868 copying build/lib/omicverse/single/_metacell_backends/geosketch_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-13T14:05:46,871 copying build/lib/omicverse/single/_metacell_backends/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-13T14:05:46,873 copying build/lib/omicverse/single/_metacell_backends/random_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-13T14:05:46,875 copying build/lib/omicverse/single/_metacell_backends/metaq_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-06-13T14:05:46,878 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,881 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,885 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,888 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,892 copying build/lib/omicverse/single/_stavia.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,895 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,898 copying build/lib/omicverse/single/_nmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,901 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,904 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,908 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,911 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,915 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,921 copying build/lib/omicverse/single/_monocle.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,926 copying build/lib/omicverse/single/_pseudotime_fate.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,933 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,937 copying build/lib/omicverse/single/_perturb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,943 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,947 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,956 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,960 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,964 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,967 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,970 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,974 copying build/lib/omicverse/single/_comm.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,977 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,980 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,985 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,988 copying build/lib/omicverse/single/_dynamic_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,992 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:46,996 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,000 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,004 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,007 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,012 creating build/bdist.linux-armv7l/wheel/omicverse/single/ev 2026-06-13T14:05:47,013 copying build/lib/omicverse/single/ev/_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,016 copying build/lib/omicverse/single/ev/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,020 copying build/lib/omicverse/single/ev/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,022 copying build/lib/omicverse/single/ev/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,025 copying build/lib/omicverse/single/ev/_annotate.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,028 copying build/lib/omicverse/single/ev/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,031 copying build/lib/omicverse/single/ev/_pseudobulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,034 copying build/lib/omicverse/single/ev/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,036 copying build/lib/omicverse/single/ev/_coloc.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,040 copying build/lib/omicverse/single/ev/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,043 copying build/lib/omicverse/single/ev/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-06-13T14:05:47,047 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-06-13T14:05:47,048 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-13T14:05:47,050 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-13T14:05:47,054 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-13T14:05:47,057 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-13T14:05:47,060 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-06-13T14:05:47,062 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-13T14:05:47,064 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-13T14:05:47,068 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-13T14:05:47,072 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-06-13T14:05:47,075 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-13T14:05:47,078 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-06-13T14:05:47,080 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,083 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,087 copying build/lib/omicverse/single/_cnv.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,090 copying build/lib/omicverse/single/_pseudobulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,093 copying build/lib/omicverse/single/_augur.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,097 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,101 copying build/lib/omicverse/single/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,104 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,112 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,116 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,119 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,121 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,125 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,128 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,131 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,134 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,137 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-06-13T14:05:47,142 creating build/bdist.linux-armv7l/wheel/omicverse/micro 2026-06-13T14:05:47,144 copying build/lib/omicverse/micro/_ord.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-13T14:05:47,146 copying build/lib/omicverse/micro/_meta.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-13T14:05:47,149 copying build/lib/omicverse/micro/_pp.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-13T14:05:47,152 copying build/lib/omicverse/micro/_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-13T14:05:47,155 copying build/lib/omicverse/micro/_pair.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-13T14:05:47,159 copying build/lib/omicverse/micro/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-13T14:05:47,161 copying build/lib/omicverse/micro/_phylo.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-13T14:05:47,163 copying build/lib/omicverse/micro/_da.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-13T14:05:47,167 copying build/lib/omicverse/micro/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-06-13T14:05:47,171 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-06-13T14:05:47,172 copying build/lib/omicverse/utils/agent_backend_openai.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,177 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,180 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-06-13T14:05:47,182 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-13T14:05:47,185 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-13T14:05:47,187 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-13T14:05:47,189 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-13T14:05:47,192 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-13T14:05:47,196 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-13T14:05:47,199 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-06-13T14:05:47,202 creating build/bdist.linux-armv7l/wheel/omicverse/utils/gpuex 2026-06-13T14:05:47,203 copying build/lib/omicverse/utils/gpuex/scipy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex 2026-06-13T14:05:47,207 creating build/bdist.linux-armv7l/wheel/omicverse/utils/gpuex/umap 2026-06-13T14:05:47,208 copying build/lib/omicverse/utils/gpuex/umap/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-13T14:05:47,211 copying build/lib/omicverse/utils/gpuex/umap/_ab.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-13T14:05:47,214 copying build/lib/omicverse/utils/gpuex/umap/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-13T14:05:47,217 copying build/lib/omicverse/utils/gpuex/umap/_sgd_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-13T14:05:47,220 copying build/lib/omicverse/utils/gpuex/umap/_sgd.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-13T14:05:47,222 copying build/lib/omicverse/utils/gpuex/umap/_init.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-06-13T14:05:47,225 copying build/lib/omicverse/utils/gpuex/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex 2026-06-13T14:05:47,227 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,231 copying build/lib/omicverse/utils/_ovagent_lookup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,233 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,236 copying build/lib/omicverse/utils/_ovagent_paths.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,238 copying build/lib/omicverse/utils/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,241 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,243 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,247 copying build/lib/omicverse/utils/_memory.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,250 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,252 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,255 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,258 copying build/lib/omicverse/utils/_seed.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,261 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,266 creating build/bdist.linux-armv7l/wheel/omicverse/utils/biocontext 2026-06-13T14:05:47,267 copying build/lib/omicverse/utils/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-06-13T14:05:47,270 copying build/lib/omicverse/utils/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-06-13T14:05:47,273 copying build/lib/omicverse/utils/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-06-13T14:05:47,277 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,280 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-06-13T14:05:47,282 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,285 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,288 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,291 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,295 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,298 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,300 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,303 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,307 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,310 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,312 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,316 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,319 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-06-13T14:05:47,322 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,325 copying build/lib/omicverse/utils/_metabolights.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,328 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,331 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,333 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,336 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,339 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,343 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,345 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,348 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,351 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,354 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,357 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,359 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,362 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,366 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,370 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,372 copying build/lib/omicverse/utils/agent_backend_streaming.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,375 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,378 copying build/lib/omicverse/utils/agent_backend_anthropic.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,381 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,384 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,387 copying build/lib/omicverse/utils/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,389 copying build/lib/omicverse/utils/agent_backend_dashscope.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,391 copying build/lib/omicverse/utils/_sample_metadata_alignment.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,395 copying build/lib/omicverse/utils/_gene_id_conversion.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,398 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,400 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,403 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,406 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-06-13T14:05:47,407 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-13T14:05:47,410 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-13T14:05:47,413 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-13T14:05:47,416 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-13T14:05:47,419 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-13T14:05:47,422 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-13T14:05:47,425 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-13T14:05:47,427 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-13T14:05:47,430 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-13T14:05:47,433 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-06-13T14:05:47,436 copying build/lib/omicverse/utils/agent_backend_gemini.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,440 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-06-13T14:05:47,442 copying build/lib/omicverse/utils/ovagent/codegen_tool_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,444 copying build/lib/omicverse/utils/ovagent/tool_runtime_exec.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,448 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,451 copying build/lib/omicverse/utils/ovagent/session_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,454 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,456 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,460 copying build/lib/omicverse/utils/ovagent/permission_policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,463 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,465 copying build/lib/omicverse/utils/ovagent/analysis_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,469 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,471 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,474 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,477 copying build/lib/omicverse/utils/ovagent/analysis_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,479 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,482 copying build/lib/omicverse/utils/ovagent/prompt_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,484 copying build/lib/omicverse/utils/ovagent/tool_runtime_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,487 copying build/lib/omicverse/utils/ovagent/turn_artifacts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,489 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,495 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,498 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,500 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,503 copying build/lib/omicverse/utils/ovagent/tool_runtime_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,506 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,510 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,515 copying build/lib/omicverse/utils/ovagent/context_budget.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,520 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,526 copying build/lib/omicverse/utils/ovagent/analysis_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,532 copying build/lib/omicverse/utils/ovagent/turn_followup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,539 copying build/lib/omicverse/utils/ovagent/tool_runtime_workspace.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,544 copying build/lib/omicverse/utils/ovagent/tool_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,547 copying build/lib/omicverse/utils/ovagent/tool_scheduler.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,550 copying build/lib/omicverse/utils/ovagent/event_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,553 copying build/lib/omicverse/utils/ovagent/repair_loop.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-06-13T14:05:47,557 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,559 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,562 copying build/lib/omicverse/utils/agent_backend_common.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-06-13T14:05:47,566 creating build/bdist.linux-armv7l/wheel/omicverse/genetics 2026-06-13T14:05:47,568 copying build/lib/omicverse/genetics/_eqtl.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,572 copying build/lib/omicverse/genetics/_scdrs.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,575 copying build/lib/omicverse/genetics/_gwas.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,579 copying build/lib/omicverse/genetics/_mr.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,582 copying build/lib/omicverse/genetics/_finemap.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,585 copying build/lib/omicverse/genetics/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,589 copying build/lib/omicverse/genetics/_ldsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,592 copying build/lib/omicverse/genetics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,595 copying build/lib/omicverse/genetics/_twas.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,597 copying build/lib/omicverse/genetics/_gsmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,600 copying build/lib/omicverse/genetics/_coloc.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,603 copying build/lib/omicverse/genetics/_simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,606 copying build/lib/omicverse/genetics/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,608 copying build/lib/omicverse/genetics/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-06-13T14:05:47,612 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-06-13T14:05:47,613 copying build/lib/omicverse/space/_tissue_zones.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,616 copying build/lib/omicverse/space/_split.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,619 copying build/lib/omicverse/space/_cellcharter.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,621 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,624 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,627 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,630 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,635 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,641 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,652 creating build/bdist.linux-armv7l/wheel/omicverse/space/histo 2026-06-13T14:05:47,656 copying build/lib/omicverse/space/histo/_stpath.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-13T14:05:47,663 copying build/lib/omicverse/space/histo/_stflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-13T14:05:47,666 copying build/lib/omicverse/space/histo/_istar.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-13T14:05:47,669 copying build/lib/omicverse/space/histo/_demo.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-13T14:05:47,671 copying build/lib/omicverse/space/histo/_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-13T14:05:47,673 copying build/lib/omicverse/space/histo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-13T14:05:47,676 copying build/lib/omicverse/space/histo/_dispatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-13T14:05:47,678 copying build/lib/omicverse/space/histo/_hest_fm.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-13T14:05:47,681 copying build/lib/omicverse/space/histo/_embed.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-06-13T14:05:47,684 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,687 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,690 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,693 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,695 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,698 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,701 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,703 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-06-13T14:05:47,706 copying build/lib/omicverse/_optional.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-13T14:05:47,709 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-06-13T14:05:47,710 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,713 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,715 copying build/lib/omicverse/alignment/simpleaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,718 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,721 copying build/lib/omicverse/alignment/vsearch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,723 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,726 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,729 copying build/lib/omicverse/alignment/mafft.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,731 copying build/lib/omicverse/alignment/amplicon_16s.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,734 copying build/lib/omicverse/alignment/cutadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,737 copying build/lib/omicverse/alignment/phylogeny.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,740 copying build/lib/omicverse/alignment/_db.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,742 copying build/lib/omicverse/alignment/dada2.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,745 copying build/lib/omicverse/alignment/fasttree.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,747 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,749 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,751 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,754 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-06-13T14:05:47,757 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-06-13T14:05:47,759 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,763 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,767 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,780 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,788 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,794 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,802 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-06-13T14:05:47,803 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-13T14:05:47,806 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-13T14:05:47,808 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-13T14:05:47,810 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-13T14:05:47,811 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-06-13T14:05:47,814 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,816 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,818 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,820 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,823 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,826 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,831 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-06-13T14:05:47,836 creating build/bdist.linux-armv7l/wheel/omicverse/airr 2026-06-13T14:05:47,838 copying build/lib/omicverse/airr/_bcr.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-13T14:05:48,051 copying build/lib/omicverse/airr/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-13T14:05:48,059 copying build/lib/omicverse/airr/_tcr.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-13T14:05:48,069 copying build/lib/omicverse/airr/_clonotype.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-13T14:05:48,077 copying build/lib/omicverse/airr/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-13T14:05:48,086 copying build/lib/omicverse/airr/_tcr_gex.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-13T14:05:48,095 copying build/lib/omicverse/airr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-13T14:05:48,100 copying build/lib/omicverse/airr/_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-13T14:05:48,105 copying build/lib/omicverse/airr/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-13T14:05:48,110 copying build/lib/omicverse/airr/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-06-13T14:05:48,115 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-06-13T14:05:48,117 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-13T14:05:48,123 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-13T14:05:48,126 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-13T14:05:48,131 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-13T14:05:48,135 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-13T14:05:48,138 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-13T14:05:48,142 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-13T14:05:48,146 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-13T14:05:48,151 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-13T14:05:48,155 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-06-13T14:05:48,158 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-06-13T14:05:48,159 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,162 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,164 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,166 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,168 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,171 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,174 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-06-13T14:05:48,175 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-13T14:05:48,177 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-13T14:05:48,179 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-13T14:05:48,181 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-13T14:05:48,183 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-13T14:05:48,185 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-13T14:05:48,187 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-06-13T14:05:48,189 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,191 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,194 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-06-13T14:05:48,195 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-06-13T14:05:48,197 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-06-13T14:05:48,199 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,202 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-06-13T14:05:48,203 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-13T14:05:48,206 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-13T14:05:48,210 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-13T14:05:48,213 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-13T14:05:48,216 copying build/lib/omicverse/jarvis/channels/channel_core.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-13T14:05:48,218 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-13T14:05:48,220 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-13T14:05:48,223 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-06-13T14:05:48,227 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,229 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,231 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,234 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,236 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,240 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-06-13T14:05:48,241 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-06-13T14:05:48,244 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-06-13T14:05:48,245 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-06-13T14:05:48,247 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,249 copying build/lib/omicverse/jarvis/gemini_cli_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,252 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,256 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-06-13T14:05:48,258 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-13T14:05:48,262 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-13T14:05:48,265 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-06-13T14:05:48,267 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-06-13T14:05:48,268 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-13T14:05:48,271 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-13T14:05:48,276 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-13T14:05:48,278 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-06-13T14:05:48,281 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-06-13T14:05:48,282 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-06-13T14:05:48,285 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-06-13T14:05:48,287 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-06-13T14:05:48,289 copying build/lib/omicverse/io/spatial/_xenium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-13T14:05:48,292 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-13T14:05:48,296 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-13T14:05:48,300 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-13T14:05:48,305 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-13T14:05:48,311 copying build/lib/omicverse/io/spatial/_atera.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-06-13T14:05:48,318 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-06-13T14:05:48,320 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-06-13T14:05:48,326 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-06-13T14:05:48,330 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-06-13T14:05:48,333 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-13T14:05:48,339 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-06-13T14:05:48,341 copying build/lib/omicverse/bulk/_enrich_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,344 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,346 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,350 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,353 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,357 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,373 copying build/lib/omicverse/bulk/_wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,377 copying build/lib/omicverse/bulk/_gsea_numpy.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,380 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,383 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,385 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,387 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,390 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-06-13T14:05:48,392 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-06-13T14:05:48,394 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,397 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,401 copying build/lib/omicverse/bulk/_ora.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-06-13T14:05:48,403 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-13T14:05:48,407 creating build/bdist.linux-armv7l/wheel/omicverse/report 2026-06-13T14:05:48,408 copying build/lib/omicverse/report/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-13T14:05:48,411 copying build/lib/omicverse/report/_html.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-13T14:05:48,413 copying build/lib/omicverse/report/_provenance.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-13T14:05:48,416 copying build/lib/omicverse/report/_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-13T14:05:48,419 copying build/lib/omicverse/report/_plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-06-13T14:05:48,422 creating build/bdist.linux-armv7l/wheel/omicverse/es 2026-06-13T14:05:48,423 copying build/lib/omicverse/es/_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,427 copying build/lib/omicverse/es/_udt.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,430 copying build/lib/omicverse/es/_zscore.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,433 copying build/lib/omicverse/es/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,436 copying build/lib/omicverse/es/_ucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,439 copying build/lib/omicverse/es/_mlm.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,442 copying build/lib/omicverse/es/_pv.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,445 copying build/lib/omicverse/es/_decouple.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,447 copying build/lib/omicverse/es/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,450 copying build/lib/omicverse/es/_datatype.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,452 copying build/lib/omicverse/es/_waggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,455 copying build/lib/omicverse/es/_methods.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,458 copying build/lib/omicverse/es/_gsva.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,465 copying build/lib/omicverse/es/_odeps.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,471 copying build/lib/omicverse/es/_run.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,474 copying build/lib/omicverse/es/_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,477 copying build/lib/omicverse/es/_mdt.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,480 copying build/lib/omicverse/es/_gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,495 copying build/lib/omicverse/es/_consensus.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,498 copying build/lib/omicverse/es/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,500 copying build/lib/omicverse/es/_method.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,503 copying build/lib/omicverse/es/_ulm.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,505 copying build/lib/omicverse/es/_viper.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,508 copying build/lib/omicverse/es/_ora.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,511 copying build/lib/omicverse/es/_query_set.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-06-13T14:05:48,514 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-06-13T14:05:48,515 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-13T14:05:48,518 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-13T14:05:48,520 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-13T14:05:48,523 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-13T14:05:48,525 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-13T14:05:48,527 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-13T14:05:48,529 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-13T14:05:48,532 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-13T14:05:48,534 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-13T14:05:48,536 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-06-13T14:05:48,539 creating build/bdist.linux-armv7l/wheel/omicverse/epi 2026-06-13T14:05:48,540 copying build/lib/omicverse/epi/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,542 copying build/lib/omicverse/epi/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,544 copying build/lib/omicverse/epi/single.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,546 copying build/lib/omicverse/epi/pp.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,548 copying build/lib/omicverse/epi/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,551 copying build/lib/omicverse/epi/bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,552 copying build/lib/omicverse/epi/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,555 copying build/lib/omicverse/epi/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,556 copying build/lib/omicverse/epi/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,559 copying build/lib/omicverse/epi/upstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,561 copying build/lib/omicverse/epi/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,563 copying build/lib/omicverse/epi/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-06-13T14:05:48,565 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-13T14:05:48,569 creating build/bdist.linux-armv7l/wheel/omicverse/mol 2026-06-13T14:05:48,570 copying build/lib/omicverse/mol/_pocket.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-13T14:05:48,573 copying build/lib/omicverse/mol/_view.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-13T14:05:48,576 copying build/lib/omicverse/mol/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-13T14:05:48,579 copying build/lib/omicverse/mol/_structure.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-13T14:05:48,585 copying build/lib/omicverse/mol/_drugs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-13T14:05:48,591 copying build/lib/omicverse/mol/_check.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-13T14:05:48,596 copying build/lib/omicverse/mol/_dock.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-06-13T14:05:48,604 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-06-13T14:05:48,616 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-06-13T14:05:48,622 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-06-13T14:05:48,626 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-13T14:05:48,637 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-13T14:05:48,647 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-13T14:05:48,655 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-13T14:05:48,667 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-13T14:05:48,677 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-06-13T14:05:48,693 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-06-13T14:05:48,698 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-13T14:05:48,707 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-13T14:05:48,710 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-13T14:05:48,712 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-13T14:05:48,715 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-13T14:05:48,717 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-06-13T14:05:48,720 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-06-13T14:05:48,721 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-13T14:05:48,724 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-13T14:05:48,727 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-06-13T14:05:48,728 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-06-13T14:05:48,731 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-06-13T14:05:48,733 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-06-13T14:05:48,734 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-13T14:05:48,736 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-13T14:05:48,739 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-13T14:05:48,741 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-06-13T14:05:48,743 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-06-13T14:05:48,744 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-13T14:05:48,747 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-13T14:05:48,750 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-13T14:05:48,753 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-06-13T14:05:48,758 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-06-13T14:05:48,760 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,763 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,767 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,771 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,776 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,782 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,788 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,796 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,806 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,815 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,827 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,838 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,852 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,861 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,867 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-06-13T14:05:48,873 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-06-13T14:05:48,876 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-13T14:05:48,882 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-13T14:05:48,885 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-13T14:05:48,890 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-13T14:05:48,895 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-13T14:05:48,900 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-13T14:05:48,904 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-06-13T14:05:48,909 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyensembl 2026-06-13T14:05:48,910 copying build/lib/omicverse/external/pyensembl/ensembl_release.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,914 copying build/lib/omicverse/external/pyensembl/ensembl_url_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,917 copying build/lib/omicverse/external/pyensembl/species.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,921 copying build/lib/omicverse/external/pyensembl/ensembl_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,923 copying build/lib/omicverse/external/pyensembl/normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,926 copying build/lib/omicverse/external/pyensembl/common.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,929 copying build/lib/omicverse/external/pyensembl/download_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,932 copying build/lib/omicverse/external/pyensembl/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,935 copying build/lib/omicverse/external/pyensembl/sequence_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,938 copying build/lib/omicverse/external/pyensembl/shell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,941 copying build/lib/omicverse/external/pyensembl/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,945 copying build/lib/omicverse/external/pyensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,948 copying build/lib/omicverse/external/pyensembl/reference_name.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,950 copying build/lib/omicverse/external/pyensembl/transcript.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,954 copying build/lib/omicverse/external/pyensembl/exon.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,956 copying build/lib/omicverse/external/pyensembl/search.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,959 copying build/lib/omicverse/external/pyensembl/gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,962 copying build/lib/omicverse/external/pyensembl/genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,965 copying build/lib/omicverse/external/pyensembl/locus.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,969 copying build/lib/omicverse/external/pyensembl/serializable.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,972 copying build/lib/omicverse/external/pyensembl/fasta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,975 copying build/lib/omicverse/external/pyensembl/locus_with_genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-06-13T14:05:48,978 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-06-13T14:05:48,980 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:48,982 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:48,985 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:48,988 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:48,991 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:48,994 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:48,996 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:49,000 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:49,002 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:49,005 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:49,007 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:49,010 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:49,013 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:49,016 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:49,019 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:49,021 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-06-13T14:05:49,025 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-06-13T14:05:49,027 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-13T14:05:49,030 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-13T14:05:49,034 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-13T14:05:49,037 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-13T14:05:49,040 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-13T14:05:49,043 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-13T14:05:49,045 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-13T14:05:49,049 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-13T14:05:49,054 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-06-13T14:05:49,057 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-06-13T14:05:49,060 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-06-13T14:05:49,061 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-13T14:05:49,064 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-13T14:05:49,066 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-13T14:05:49,068 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-06-13T14:05:49,070 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-06-13T14:05:49,071 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-06-13T14:05:49,073 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-06-13T14:05:49,076 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-06-13T14:05:49,078 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-06-13T14:05:49,079 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-06-13T14:05:49,082 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-06-13T14:05:49,084 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-06-13T14:05:49,085 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-13T14:05:49,087 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-13T14:05:49,090 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-13T14:05:49,092 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-13T14:05:49,094 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-13T14:05:49,097 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-06-13T14:05:49,101 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-06-13T14:05:49,102 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-06-13T14:05:49,105 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-06-13T14:05:49,106 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-13T14:05:49,109 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-06-13T14:05:49,110 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-06-13T14:05:49,112 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-06-13T14:05:49,114 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-06-13T14:05:49,117 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-06-13T14:05:49,118 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-06-13T14:05:49,120 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-06-13T14:05:49,121 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-13T14:05:49,124 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-13T14:05:49,126 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-13T14:05:49,128 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-13T14:05:49,130 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-13T14:05:49,132 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-13T14:05:49,134 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-06-13T14:05:49,136 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-06-13T14:05:49,139 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-06-13T14:05:49,140 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-06-13T14:05:49,142 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-06-13T14:05:49,144 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-06-13T14:05:49,147 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-06-13T14:05:49,150 creating build/bdist.linux-armv7l/wheel/omicverse/external/py_scmetabolism 2026-06-13T14:05:49,151 copying build/lib/omicverse/external/py_scmetabolism/methods.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-13T14:05:49,154 copying build/lib/omicverse/external/py_scmetabolism/compute.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-13T14:05:49,156 copying build/lib/omicverse/external/py_scmetabolism/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-13T14:05:49,159 copying build/lib/omicverse/external/py_scmetabolism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-06-13T14:05:49,161 creating build/bdist.linux-armv7l/wheel/omicverse/external/geosketch 2026-06-13T14:05:49,162 copying build/lib/omicverse/external/geosketch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-13T14:05:49,164 copying build/lib/omicverse/external/geosketch/kmeanspp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-13T14:05:49,166 copying build/lib/omicverse/external/geosketch/sketch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-13T14:05:49,168 copying build/lib/omicverse/external/geosketch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-06-13T14:05:49,171 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-06-13T14:05:49,172 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-06-13T14:05:49,173 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-13T14:05:49,175 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-13T14:05:49,178 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-13T14:05:49,180 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-06-13T14:05:49,182 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-06-13T14:05:49,183 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-06-13T14:05:49,185 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-06-13T14:05:49,188 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-06-13T14:05:49,191 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-06-13T14:05:49,192 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-06-13T14:05:49,194 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-06-13T14:05:49,195 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-06-13T14:05:49,202 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-06-13T14:05:49,210 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-06-13T14:05:49,218 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-06-13T14:05:49,219 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-06-13T14:05:49,236 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-06-13T14:05:49,258 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-06-13T14:05:49,276 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-06-13T14:05:49,283 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-06-13T14:05:49,287 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-06-13T14:05:49,291 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-06-13T14:05:49,293 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-06-13T14:05:49,297 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-06-13T14:05:49,299 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-13T14:05:49,303 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-13T14:05:49,310 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-13T14:05:49,312 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-13T14:05:49,316 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-13T14:05:49,319 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-06-13T14:05:49,321 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-06-13T14:05:49,322 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-06-13T14:05:49,324 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-06-13T14:05:49,327 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-06-13T14:05:49,328 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-13T14:05:49,330 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-13T14:05:49,333 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,334 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,337 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,339 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,343 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,344 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,347 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,349 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,352 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,354 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,357 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,359 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,362 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,364 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,366 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,368 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,370 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,372 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,375 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-06-13T14:05:49,378 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-13T14:05:49,381 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-13T14:05:49,384 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-06-13T14:05:49,388 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,390 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,392 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,394 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,397 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,399 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,401 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,403 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,405 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,407 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,409 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,412 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-06-13T14:05:49,414 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-06-13T14:05:49,415 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-06-13T14:05:49,417 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-06-13T14:05:49,419 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-06-13T14:05:49,422 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-06-13T14:05:49,423 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-13T14:05:49,426 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-13T14:05:49,428 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-13T14:05:49,430 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-13T14:05:49,433 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-13T14:05:49,436 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-13T14:05:49,437 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-13T14:05:49,440 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-13T14:05:49,443 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-06-13T14:05:49,446 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-06-13T14:05:49,447 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,450 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,452 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,454 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,456 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,459 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-06-13T14:05:49,460 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-13T14:05:49,462 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-13T14:05:49,464 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-13T14:05:49,466 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-13T14:05:49,468 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-06-13T14:05:49,470 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,472 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,474 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,476 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,477 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,479 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,481 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,483 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,487 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-06-13T14:05:49,488 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-13T14:05:49,490 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-13T14:05:49,493 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-13T14:05:49,495 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-13T14:05:49,498 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-13T14:05:49,501 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-13T14:05:49,502 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-13T14:05:49,505 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-06-13T14:05:49,508 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,510 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,512 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,514 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,515 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,519 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-06-13T14:05:49,520 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-06-13T14:05:49,522 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-06-13T14:05:49,524 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-06-13T14:05:49,527 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-06-13T14:05:49,528 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-06-13T14:05:49,531 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-06-13T14:05:49,532 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-06-13T14:05:49,535 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,537 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,539 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-06-13T14:05:49,542 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-06-13T14:05:49,543 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-06-13T14:05:49,545 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-06-13T14:05:49,546 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-06-13T14:05:49,548 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-06-13T14:05:49,551 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-06-13T14:05:49,552 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-06-13T14:05:49,554 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-06-13T14:05:49,556 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-06-13T14:05:49,559 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-06-13T14:05:49,560 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-13T14:05:49,562 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-13T14:05:49,564 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-13T14:05:49,567 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-06-13T14:05:49,570 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-06-13T14:05:49,571 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-06-13T14:05:49,573 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-06-13T14:05:49,576 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-06-13T14:05:49,577 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-06-13T14:05:49,580 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-13T14:05:49,582 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-13T14:05:49,585 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-06-13T14:05:49,586 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-06-13T14:05:49,589 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-06-13T14:05:49,591 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-06-13T14:05:49,593 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-13T14:05:49,596 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-13T14:05:49,598 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-13T14:05:49,601 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-06-13T14:05:49,602 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-13T14:05:49,605 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-13T14:05:49,607 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-13T14:05:49,609 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-13T14:05:49,612 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-06-13T14:05:49,614 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-06-13T14:05:49,615 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-06-13T14:05:49,618 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-06-13T14:05:49,621 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-06-13T14:05:49,622 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-06-13T14:05:49,625 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-06-13T14:05:49,628 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-06-13T14:05:49,630 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-06-13T14:05:49,631 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-13T14:05:49,634 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-13T14:05:49,636 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-13T14:05:49,638 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-13T14:05:49,640 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-06-13T14:05:49,642 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-06-13T14:05:49,643 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-06-13T14:05:49,646 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-06-13T14:05:49,647 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-06-13T14:05:49,650 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-06-13T14:05:49,651 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-13T14:05:49,654 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-13T14:05:49,656 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-13T14:05:49,659 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-13T14:05:49,661 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-13T14:05:49,663 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-13T14:05:49,665 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-13T14:05:49,667 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-06-13T14:05:49,670 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap 2026-06-13T14:05:49,671 copying build/lib/omicverse/external/gsmap/_style.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,673 copying build/lib/omicverse/external/gsmap/_regression_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,675 copying build/lib/omicverse/external/gsmap/spatial_ldsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,677 copying build/lib/omicverse/external/gsmap/latent_to_gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,679 copying build/lib/omicverse/external/gsmap/_visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,682 copying build/lib/omicverse/external/gsmap/diagnosis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,685 copying build/lib/omicverse/external/gsmap/_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,687 copying build/lib/omicverse/external/gsmap/cauchy_combination.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,689 copying build/lib/omicverse/external/gsmap/_jackknife.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,692 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap/gnn 2026-06-13T14:05:49,693 copying build/lib/omicverse/external/gsmap/gnn/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-13T14:05:49,695 copying build/lib/omicverse/external/gsmap/gnn/adjacency_matrix.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-13T14:05:49,697 copying build/lib/omicverse/external/gsmap/gnn/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-13T14:05:49,699 copying build/lib/omicverse/external/gsmap/gnn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-06-13T14:05:49,701 copying build/lib/omicverse/external/gsmap/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,702 copying build/lib/omicverse/external/gsmap/find_latent_representation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,705 copying build/lib/omicverse/external/gsmap/generate_ldscore.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,707 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap/templates 2026-06-13T14:05:49,708 copying build/lib/omicverse/external/gsmap/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/templates 2026-06-13T14:05:49,711 copying build/lib/omicverse/external/gsmap/_manhattan_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,713 copying build/lib/omicverse/external/gsmap/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-06-13T14:05:49,716 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-06-13T14:05:49,717 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,720 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,723 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,725 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,728 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,730 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,732 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,735 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,737 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,739 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,742 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,745 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-06-13T14:05:49,748 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-06-13T14:05:49,749 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-13T14:05:49,751 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-13T14:05:49,754 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-13T14:05:49,756 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-13T14:05:49,758 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-13T14:05:49,760 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-13T14:05:49,762 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-06-13T14:05:49,765 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-06-13T14:05:49,767 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-13T14:05:49,771 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-13T14:05:49,777 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-13T14:05:49,785 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-13T14:05:49,791 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-13T14:05:49,799 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-13T14:05:49,809 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-13T14:05:49,814 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-06-13T14:05:49,818 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-06-13T14:05:49,819 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-06-13T14:05:49,825 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-06-13T14:05:49,829 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-06-13T14:05:49,831 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-06-13T14:05:49,833 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,837 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,840 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,843 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,847 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,850 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,854 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-06-13T14:05:49,856 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-13T14:05:49,859 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-13T14:05:49,862 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-13T14:05:49,866 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-13T14:05:49,869 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-13T14:05:49,872 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-13T14:05:49,875 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-06-13T14:05:49,879 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-06-13T14:05:49,881 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-13T14:05:49,885 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-13T14:05:49,888 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-13T14:05:49,891 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-06-13T14:05:49,895 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,899 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,902 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,905 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,908 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,911 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,915 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,918 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,921 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-06-13T14:05:49,923 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-13T14:05:49,926 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-13T14:05:49,929 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-13T14:05:49,933 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-13T14:05:49,936 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-13T14:05:49,939 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-06-13T14:05:49,941 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,944 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,947 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,950 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,954 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,957 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,960 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,963 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,965 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,968 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,971 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,974 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,977 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,979 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,983 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,986 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:49,990 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-06-13T14:05:49,991 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-13T14:05:49,995 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-13T14:05:49,998 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-13T14:05:50,001 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-13T14:05:50,003 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-13T14:05:50,007 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-13T14:05:50,011 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-13T14:05:50,016 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-13T14:05:50,022 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-06-13T14:05:50,030 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:50,037 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:50,044 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:50,049 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-06-13T14:05:50,052 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-06-13T14:05:50,054 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-13T14:05:50,057 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-13T14:05:50,060 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-13T14:05:50,063 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-13T14:05:50,066 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-13T14:05:50,068 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-13T14:05:50,071 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-13T14:05:50,074 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-06-13T14:05:50,078 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-06-13T14:05:50,080 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,084 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,087 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,090 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,093 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,096 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,099 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,102 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,106 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,109 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,112 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,115 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-06-13T14:05:50,119 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-06-13T14:05:50,120 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-13T14:05:50,123 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-13T14:05:50,126 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-13T14:05:50,129 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-13T14:05:50,131 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-13T14:05:50,134 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-06-13T14:05:50,137 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-13T14:05:50,141 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-06-13T14:05:50,142 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,146 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,148 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,152 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,155 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,158 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,161 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,165 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,168 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,170 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,173 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,176 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,179 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,182 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,185 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,188 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,190 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,192 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,194 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,197 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,200 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,203 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-06-13T14:05:50,206 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-13T14:05:50,208 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-13T14:05:50,212 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-06-13T14:05:50,213 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-06-13T14:05:50,215 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-06-13T14:05:50,218 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-13T14:05:50,221 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-06-13T14:05:50,224 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-06-13T14:05:50,226 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-13T14:05:50,229 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-13T14:05:50,231 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-13T14:05:50,233 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-13T14:05:50,236 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-13T14:05:50,238 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-06-13T14:05:50,242 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-06-13T14:05:50,243 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-06-13T14:05:50,245 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-06-13T14:05:50,248 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-06-13T14:05:50,251 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-06-13T14:05:50,252 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-13T14:05:50,255 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-13T14:05:50,257 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-13T14:05:50,259 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-13T14:05:50,262 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-06-13T14:05:50,265 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-06-13T14:05:50,266 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-13T14:05:50,269 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-13T14:05:50,272 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-13T14:05:50,274 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-06-13T14:05:50,277 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-06-13T14:05:50,279 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-06-13T14:05:50,281 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-06-13T14:05:50,283 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-06-13T14:05:50,285 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-06-13T14:05:50,289 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-06-13T14:05:50,290 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-06-13T14:05:50,293 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-06-13T14:05:50,296 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-06-13T14:05:50,299 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-06-13T14:05:50,301 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-13T14:05:50,303 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-13T14:05:50,328 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-13T14:05:50,808 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-06-13T14:05:50,810 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-06-13T14:05:50,813 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-06-13T14:05:50,814 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-13T14:05:50,816 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-13T14:05:50,819 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-13T14:05:50,822 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-13T14:05:50,825 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-13T14:05:50,827 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-13T14:05:50,829 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-13T14:05:50,831 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-13T14:05:50,833 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-06-13T14:05:50,835 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-06-13T14:05:50,838 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-06-13T14:05:50,840 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-06-13T14:05:50,844 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-06-13T14:05:50,845 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-06-13T14:05:50,848 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-06-13T14:05:50,850 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-06-13T14:05:50,854 creating build/bdist.linux-armv7l/wheel/omicverse/external/pylimma 2026-06-13T14:05:50,856 copying build/lib/omicverse/external/pylimma/fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pylimma 2026-06-13T14:05:50,860 copying build/lib/omicverse/external/pylimma/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pylimma 2026-06-13T14:05:50,863 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-06-13T14:05:50,864 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-13T14:05:50,867 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-13T14:05:50,869 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-13T14:05:50,872 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-13T14:05:50,874 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-06-13T14:05:50,881 creating build/bdist.linux-armv7l/wheel/omicverse/external/scfea 2026-06-13T14:05:50,882 copying build/lib/omicverse/external/scfea/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-13T14:05:50,884 copying build/lib/omicverse/external/scfea/scFEA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-13T14:05:50,887 creating build/bdist.linux-armv7l/wheel/omicverse/external/scfea/data 2026-06-13T14:05:50,888 copying build/lib/omicverse/external/scfea/data/cName_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-13T14:05:50,891 copying build/lib/omicverse/external/scfea/data/cmMat_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-13T14:05:50,893 copying build/lib/omicverse/external/scfea/data/module_gene_complete_mouse_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-13T14:05:50,896 copying build/lib/omicverse/external/scfea/data/cmMat_complete_mouse_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-13T14:05:50,898 copying build/lib/omicverse/external/scfea/data/cName_complete_mouse_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-13T14:05:50,900 copying build/lib/omicverse/external/scfea/data/module_gene_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-13T14:05:50,903 copying build/lib/omicverse/external/scfea/data/Human_M168_information.symbols.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-06-13T14:05:50,905 copying build/lib/omicverse/external/scfea/DatasetFlux.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-13T14:05:50,907 copying build/lib/omicverse/external/scfea/ClassFlux.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-13T14:05:50,909 copying build/lib/omicverse/external/scfea/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-06-13T14:05:50,912 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-06-13T14:05:50,913 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,915 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,918 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,922 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,925 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,927 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,930 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,933 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,939 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,941 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,944 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,946 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-06-13T14:05:50,949 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:50,950 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:50,953 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-06-13T14:05:50,954 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-06-13T14:05:51,034 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-06-13T14:05:51,039 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-06-13T14:05:51,044 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,047 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,049 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,051 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,054 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,056 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,058 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,060 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,062 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,064 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,066 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-06-13T14:05:51,069 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:51,070 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:51,073 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:51,075 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:51,077 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:51,080 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-06-13T14:05:51,082 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-06-13T14:05:51,085 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellcharter 2026-06-13T14:05:51,086 copying build/lib/omicverse/external/cellcharter/_aggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-13T14:05:51,088 copying build/lib/omicverse/external/cellcharter/_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-13T14:05:51,090 copying build/lib/omicverse/external/cellcharter/_gmm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-13T14:05:51,093 copying build/lib/omicverse/external/cellcharter/_autok.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-13T14:05:51,095 copying build/lib/omicverse/external/cellcharter/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-13T14:05:51,098 copying build/lib/omicverse/external/cellcharter/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-06-13T14:05:51,100 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-06-13T14:05:51,102 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-13T14:05:51,105 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-13T14:05:51,107 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-13T14:05:51,109 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-13T14:05:51,112 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-13T14:05:51,115 copying build/lib/omicverse/external/umap_pytorch/fuzzy_gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-06-13T14:05:51,118 creating build/bdist.linux-armv7l/wheel/omicverse/external/monocle2_py 2026-06-13T14:05:51,120 copying build/lib/omicverse/external/monocle2_py/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-13T14:05:51,123 copying build/lib/omicverse/external/monocle2_py/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-13T14:05:51,126 copying build/lib/omicverse/external/monocle2_py/clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-13T14:05:51,129 copying build/lib/omicverse/external/monocle2_py/ordering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-13T14:05:51,132 copying build/lib/omicverse/external/monocle2_py/ddrtree.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-13T14:05:51,135 copying build/lib/omicverse/external/monocle2_py/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-13T14:05:51,139 copying build/lib/omicverse/external/monocle2_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-13T14:05:51,141 copying build/lib/omicverse/external/monocle2_py/dimension_reduction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-13T14:05:51,144 copying build/lib/omicverse/external/monocle2_py/differential.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-06-13T14:05:51,148 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-06-13T14:05:51,149 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-13T14:05:51,153 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-13T14:05:51,156 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-13T14:05:51,159 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-06-13T14:05:51,160 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-06-13T14:05:51,162 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-06-13T14:05:51,164 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-06-13T14:05:51,166 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-13T14:05:51,168 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-13T14:05:51,171 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-13T14:05:51,172 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-06-13T14:05:51,178 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-06-13T14:05:51,179 copying build/lib/omicverse/external/harmony/_harmony_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-13T14:05:51,182 copying build/lib/omicverse/external/harmony/_harmony_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-13T14:05:51,184 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-13T14:05:51,187 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-13T14:05:51,188 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-06-13T14:05:51,192 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-06-13T14:05:51,193 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-13T14:05:51,196 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-13T14:05:51,199 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-13T14:05:51,201 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-13T14:05:51,203 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-06-13T14:05:51,206 creating build/bdist.linux-armv7l/wheel/omicverse/external/istar 2026-06-13T14:05:51,207 copying build/lib/omicverse/external/istar/extract_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,210 copying build/lib/omicverse/external/istar/requirements.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,212 copying build/lib/omicverse/external/istar/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,214 copying build/lib/omicverse/external/istar/reduce_dim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,216 copying build/lib/omicverse/external/istar/pixannot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,218 copying build/lib/omicverse/external/istar/hipt_heatmap_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,221 copying build/lib/omicverse/external/istar/get_mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,223 copying build/lib/omicverse/external/istar/hipt_model_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,226 copying build/lib/omicverse/external/istar/impute_by_basic.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,228 copying build/lib/omicverse/external/istar/connected_components.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,230 copying build/lib/omicverse/external/istar/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,232 copying build/lib/omicverse/external/istar/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,234 copying build/lib/omicverse/external/istar/aggregate_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,236 copying build/lib/omicverse/external/istar/hipt_4k.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,239 copying build/lib/omicverse/external/istar/impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,241 copying build/lib/omicverse/external/istar/NOTICE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,243 copying build/lib/omicverse/external/istar/rescale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,245 copying build/lib/omicverse/external/istar/vision_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,248 copying build/lib/omicverse/external/istar/plot_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,250 copying build/lib/omicverse/external/istar/structural_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,253 copying build/lib/omicverse/external/istar/marker_score.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,255 copying build/lib/omicverse/external/istar/plot_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,257 copying build/lib/omicverse/external/istar/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,258 copying build/lib/omicverse/external/istar/reorganize_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,260 copying build/lib/omicverse/external/istar/visual.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,263 copying build/lib/omicverse/external/istar/cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,266 copying build/lib/omicverse/external/istar/select_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,268 copying build/lib/omicverse/external/istar/vision_transformer4k.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,271 copying build/lib/omicverse/external/istar/image.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,273 copying build/lib/omicverse/external/istar/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,275 copying build/lib/omicverse/external/istar/enrich.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,278 copying build/lib/omicverse/external/istar/differential.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-06-13T14:05:51,280 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-06-13T14:05:51,283 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-06-13T14:05:51,284 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-13T14:05:51,287 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-13T14:05:51,290 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,291 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,293 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,311 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,313 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,316 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,318 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,321 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,323 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,325 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,327 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,329 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,331 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,334 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,337 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,340 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,342 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,344 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,346 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-06-13T14:05:51,348 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-13T14:05:51,351 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-06-13T14:05:51,353 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-06-13T14:05:51,356 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-06-13T14:05:51,357 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-06-13T14:05:51,359 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-06-13T14:05:51,362 creating build/bdist.linux-armv7l/wheel/omicverse/external/MetaQ 2026-06-13T14:05:51,363 copying build/lib/omicverse/external/MetaQ/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-13T14:05:51,366 copying build/lib/omicverse/external/MetaQ/engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-13T14:05:51,368 copying build/lib/omicverse/external/MetaQ/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-13T14:05:51,370 copying build/lib/omicverse/external/MetaQ/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-06-13T14:05:51,373 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-06-13T14:05:51,375 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-06-13T14:05:51,376 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-13T14:05:51,379 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-13T14:05:51,381 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-13T14:05:51,384 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-13T14:05:51,386 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-06-13T14:05:51,388 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-13T14:05:51,391 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-13T14:05:51,394 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-13T14:05:51,396 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-13T14:05:51,399 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-13T14:05:51,402 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-13T14:05:51,404 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-13T14:05:51,406 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-13T14:05:51,409 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-06-13T14:05:51,412 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold 2026-06-13T14:05:51,413 copying build/lib/omicverse/external/scTenifold/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold 2026-06-13T14:05:51,415 copying build/lib/omicverse/external/scTenifold/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold 2026-06-13T14:05:51,418 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/plotting 2026-06-13T14:05:51,420 copying build/lib/omicverse/external/scTenifold/plotting/_dim_reduction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-06-13T14:05:51,423 copying build/lib/omicverse/external/scTenifold/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-06-13T14:05:51,425 copying build/lib/omicverse/external/scTenifold/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-06-13T14:05:51,428 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/core 2026-06-13T14:05:51,429 copying build/lib/omicverse/external/scTenifold/core/_decomposition.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-13T14:05:51,431 copying build/lib/omicverse/external/scTenifold/core/_ko.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-13T14:05:51,433 copying build/lib/omicverse/external/scTenifold/core/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-13T14:05:51,435 copying build/lib/omicverse/external/scTenifold/core/_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-13T14:05:51,437 copying build/lib/omicverse/external/scTenifold/core/_base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-13T14:05:51,440 copying build/lib/omicverse/external/scTenifold/core/_QC.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-13T14:05:51,442 copying build/lib/omicverse/external/scTenifold/core/_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-13T14:05:51,444 copying build/lib/omicverse/external/scTenifold/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-13T14:05:51,445 copying build/lib/omicverse/external/scTenifold/core/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-13T14:05:51,448 copying build/lib/omicverse/external/scTenifold/core/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-06-13T14:05:51,451 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/cell_cycle 2026-06-13T14:05:51,452 copying build/lib/omicverse/external/scTenifold/cell_cycle/scoring.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-06-13T14:05:51,454 copying build/lib/omicverse/external/scTenifold/cell_cycle/UCell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-06-13T14:05:51,456 copying build/lib/omicverse/external/scTenifold/cell_cycle/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-06-13T14:05:51,459 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-06-13T14:05:51,460 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-06-13T14:05:51,462 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-06-13T14:05:51,464 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-13T14:05:51,466 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-13T14:05:51,468 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-13T14:05:51,470 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-06-13T14:05:51,474 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-06-13T14:05:51,475 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-13T14:05:51,478 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-13T14:05:51,480 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-13T14:05:51,482 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-06-13T14:05:51,486 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-06-13T14:05:51,487 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-13T14:05:51,489 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-13T14:05:51,492 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-13T14:05:51,495 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-13T14:05:51,497 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-13T14:05:51,499 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-13T14:05:51,501 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-13T14:05:51,503 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-06-13T14:05:51,506 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv 2026-06-13T14:05:51,507 copying build/lib/omicverse/external/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-13T14:05:51,509 copying build/lib/omicverse/external/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-13T14:05:51,512 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/algorithms 2026-06-13T14:05:51,513 copying build/lib/omicverse/external/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,516 copying build/lib/omicverse/external/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,518 copying build/lib/omicverse/external/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,520 copying build/lib/omicverse/external/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,522 copying build/lib/omicverse/external/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,525 copying build/lib/omicverse/external/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,527 copying build/lib/omicverse/external/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,529 copying build/lib/omicverse/external/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,532 copying build/lib/omicverse/external/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,534 copying build/lib/omicverse/external/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,536 copying build/lib/omicverse/external/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,538 copying build/lib/omicverse/external/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-06-13T14:05:51,540 copying build/lib/omicverse/external/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-13T14:05:51,542 copying build/lib/omicverse/external/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-13T14:05:51,545 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/hub 2026-06-13T14:05:51,546 copying build/lib/omicverse/external/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-13T14:05:51,548 copying build/lib/omicverse/external/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-13T14:05:51,551 copying build/lib/omicverse/external/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-13T14:05:51,554 copying build/lib/omicverse/external/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-13T14:05:51,556 copying build/lib/omicverse/external/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-06-13T14:05:51,558 copying build/lib/omicverse/external/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-13T14:05:51,560 copying build/lib/omicverse/external/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-06-13T14:05:51,563 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyedger 2026-06-13T14:05:51,564 copying build/lib/omicverse/external/pyedger/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyedger 2026-06-13T14:05:51,568 copying build/lib/omicverse/external/pyedger/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyedger 2026-06-13T14:05:51,571 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-06-13T14:05:51,572 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-06-13T14:05:51,575 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-06-13T14:05:51,577 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-06-13T14:05:51,580 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-06-13T14:05:51,581 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-06-13T14:05:51,585 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-06-13T14:05:51,587 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-06-13T14:05:51,591 creating build/bdist.linux-armv7l/wheel/omicverse/external/mcRigor 2026-06-13T14:05:51,592 copying build/lib/omicverse/external/mcRigor/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mcRigor 2026-06-13T14:05:51,595 copying build/lib/omicverse/external/mcRigor/rigor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mcRigor 2026-06-13T14:05:51,599 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-06-13T14:05:51,600 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-13T14:05:51,604 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-13T14:05:51,606 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-13T14:05:51,609 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-06-13T14:05:51,611 copying build/lib/omicverse/external/torch_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-06-13T14:05:51,624 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-06-13T14:05:51,626 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-06-13T14:05:51,631 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-06-13T14:05:51,662 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-06-13T14:05:51,664 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,668 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,672 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,675 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,680 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,683 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,686 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,689 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,692 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,699 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,701 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-06-13T14:05:51,706 creating build/bdist.linux-armv7l/wheel/omicverse/external/gtfparse 2026-06-13T14:05:51,708 copying build/lib/omicverse/external/gtfparse/parsing_error.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-13T14:05:51,712 copying build/lib/omicverse/external/gtfparse/attribute_parsing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-13T14:05:51,715 copying build/lib/omicverse/external/gtfparse/read_gtf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-13T14:05:51,719 copying build/lib/omicverse/external/gtfparse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-13T14:05:51,723 copying build/lib/omicverse/external/gtfparse/create_missing_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-06-13T14:05:51,729 creating build/bdist.linux-armv7l/wheel/omicverse/external/supercell 2026-06-13T14:05:51,731 copying build/lib/omicverse/external/supercell/supercell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/supercell 2026-06-13T14:05:51,737 copying build/lib/omicverse/external/supercell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/supercell 2026-06-13T14:05:51,743 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-06-13T14:05:51,746 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-13T14:05:51,754 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-13T14:05:51,767 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-13T14:05:51,786 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-13T14:05:51,796 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-13T14:05:51,813 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-13T14:05:51,827 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-06-13T14:05:51,835 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-06-13T14:05:51,838 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-13T14:05:51,847 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-13T14:05:51,855 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-13T14:05:51,861 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-13T14:05:51,868 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-13T14:05:51,875 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-06-13T14:05:51,892 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost 2026-06-13T14:05:51,896 copying build/lib/omicverse/external/mebocost/mebocost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-13T14:05:51,911 copying build/lib/omicverse/external/mebocost/crosstalk_plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-13T14:05:51,923 copying build/lib/omicverse/external/mebocost/fba_handler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-13T14:05:51,926 copying build/lib/omicverse/external/mebocost/MetEstimator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-13T14:05:51,929 copying build/lib/omicverse/external/mebocost/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-13T14:05:51,931 copying build/lib/omicverse/external/mebocost/crosstalk_calculator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-13T14:05:51,944 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data 2026-06-13T14:05:51,954 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db 2026-06-13T14:05:51,966 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/human 2026-06-13T14:05:51,973 copying build/lib/omicverse/external/mebocost/data/mebocost_db/human/human_met_sensor_update_Oct21_2025.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/human 2026-06-13T14:05:51,983 copying build/lib/omicverse/external/mebocost/data/mebocost_db/human/metabolite_associated_gene_reaction_HMDB_summary.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/human 2026-06-13T14:05:52,015 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/common 2026-06-13T14:05:52,017 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/metabolite_annotation_HMDB_summary.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-06-13T14:05:52,045 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/human_mouse_homology_gene_pair.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-06-13T14:05:52,055 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/hmdb_blood_metabolite_concentration.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-06-13T14:05:52,059 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-13T14:05:52,060 copying build/lib/omicverse/external/mebocost/data/mebocost_db/mouse/metabolite_associated_gene_reaction_HMDB_summary_mouse.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-13T14:05:52,095 copying build/lib/omicverse/external/mebocost/data/mebocost_db/mouse/mouse_met_sensor_update_Oct21_2025.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/mouse 2026-06-13T14:05:52,105 copying build/lib/omicverse/external/mebocost/crosstalk_diff.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-06-13T14:05:52,108 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-06-13T14:05:52,110 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-13T14:05:52,114 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-13T14:05:52,118 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-13T14:05:52,121 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-13T14:05:52,124 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-06-13T14:05:52,128 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-06-13T14:05:52,130 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,132 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,136 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,139 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,144 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,150 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,152 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,155 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,158 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,162 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,165 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,168 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,170 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-06-13T14:05:52,174 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-06-13T14:05:52,175 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,178 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,181 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,185 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,189 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,197 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,203 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,206 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,208 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,211 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,214 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-06-13T14:05:52,218 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-06-13T14:05:52,220 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-06-13T14:05:52,222 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-13T14:05:52,225 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-13T14:05:52,230 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-13T14:05:52,233 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-13T14:05:52,235 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-06-13T14:05:52,237 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-06-13T14:05:52,238 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-06-13T14:05:52,242 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-06-13T14:05:52,245 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-06-13T14:05:52,247 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-06-13T14:05:52,249 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-06-13T14:05:52,250 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-06-13T14:05:52,253 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-06-13T14:05:52,256 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-06-13T14:05:52,259 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-06-13T14:05:52,260 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-06-13T14:05:52,263 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-06-13T14:05:52,266 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-06-13T14:05:52,267 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-06-13T14:05:52,269 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-13T14:05:52,270 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-13T14:05:52,275 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-13T14:05:52,280 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-06-13T14:05:52,285 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-13T14:05:52,286 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-13T14:05:52,290 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-06-13T14:05:52,293 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-06-13T14:05:52,295 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-06-13T14:05:52,296 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-13T14:05:52,299 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-13T14:05:52,302 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-13T14:05:52,304 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-13T14:05:52,307 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-06-13T14:05:52,309 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-06-13T14:05:52,310 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-13T14:05:52,314 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-13T14:05:52,316 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-13T14:05:52,318 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-13T14:05:52,321 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-13T14:05:52,323 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-13T14:05:52,325 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-06-13T14:05:52,329 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-06-13T14:05:52,330 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-13T14:05:52,332 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-13T14:05:52,335 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-13T14:05:52,337 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-13T14:05:52,339 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-13T14:05:52,342 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-13T14:05:52,344 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-06-13T14:05:52,347 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-06-13T14:05:52,349 copying build/lib/omicverse/pl/_heatmap_marsilea.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,354 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,360 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,364 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,369 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,372 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,376 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,380 copying build/lib/omicverse/pl/_perturbation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,385 copying build/lib/omicverse/pl/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,388 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,393 copying build/lib/omicverse/pl/_trajectory.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,400 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,403 copying build/lib/omicverse/pl/_branch_streamplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,406 copying build/lib/omicverse/pl/_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,409 copying build/lib/omicverse/pl/_dynamic_trends.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,411 copying build/lib/omicverse/pl/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,414 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,417 copying build/lib/omicverse/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,427 creating build/bdist.linux-armv7l/wheel/omicverse/pl/_data 2026-06-13T14:05:52,428 copying build/lib/omicverse/pl/_data/generate_centromeres.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-06-13T14:05:52,431 copying build/lib/omicverse/pl/_data/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-06-13T14:05:52,433 copying build/lib/omicverse/pl/_data/centromere_hg38.csv -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-06-13T14:05:52,435 copying build/lib/omicverse/pl/_data/centromere_mm10.csv -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-06-13T14:05:52,437 copying build/lib/omicverse/pl/_data/centromere_hg19.csv -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-06-13T14:05:52,439 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,445 copying build/lib/omicverse/pl/_plot1cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,448 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,451 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,454 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,457 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,460 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,463 copying build/lib/omicverse/pl/_scanpy_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,465 copying build/lib/omicverse/pl/_plot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,469 copying build/lib/omicverse/pl/_scatterplot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,472 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,475 copying build/lib/omicverse/pl/_cnv.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,478 copying build/lib/omicverse/pl/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,481 copying build/lib/omicverse/pl/_venn_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,483 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,490 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,492 copying build/lib/omicverse/pl/_funkyheatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,495 copying build/lib/omicverse/pl/_upset.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,499 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,502 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,506 copying build/lib/omicverse/pl/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-06-13T14:05:52,509 creating build/bdist.linux-armv7l/wheel/omicverse/metabol 2026-06-13T14:05:52,511 copying build/lib/omicverse/metabol/_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,514 copying build/lib/omicverse/metabol/_multifactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,517 copying build/lib/omicverse/metabol/pymetabo.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,521 copying build/lib/omicverse/metabol/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,523 copying build/lib/omicverse/metabol/_msea.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,526 copying build/lib/omicverse/metabol/_impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,528 copying build/lib/omicverse/metabol/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,531 copying build/lib/omicverse/metabol/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,535 copying build/lib/omicverse/metabol/_integration.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,538 copying build/lib/omicverse/metabol/_biomarker.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,541 copying build/lib/omicverse/metabol/_correlation.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,544 copying build/lib/omicverse/metabol/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,547 copying build/lib/omicverse/metabol/_transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,550 copying build/lib/omicverse/metabol/_plsda.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,553 copying build/lib/omicverse/metabol/_fetchers.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,556 copying build/lib/omicverse/metabol/_id_mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,559 copying build/lib/omicverse/metabol/_mummichog.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,562 copying build/lib/omicverse/metabol/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,565 copying build/lib/omicverse/metabol/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,567 copying build/lib/omicverse/metabol/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,570 copying build/lib/omicverse/metabol/_lipidomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-06-13T14:05:52,575 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-06-13T14:05:52,576 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-13T14:05:52,579 copying build/lib/omicverse/datasets/_timecourse.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-13T14:05:52,581 copying build/lib/omicverse/datasets/_ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-13T14:05:52,584 copying build/lib/omicverse/datasets/_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-13T14:05:52,586 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-13T14:05:52,588 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files 2026-06-13T14:05:52,589 copying build/lib/omicverse/datasets/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-13T14:05:52,660 copying build/lib/omicverse/datasets/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-13T14:05:52,662 copying build/lib/omicverse/datasets/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-13T14:05:52,667 copying build/lib/omicverse/datasets/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-13T14:05:52,669 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files/TF 2026-06-13T14:05:52,670 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-13T14:05:52,682 copying build/lib/omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-13T14:05:52,693 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-13T14:05:52,706 copying build/lib/omicverse/datasets/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-13T14:05:52,709 copying build/lib/omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-06-13T14:05:52,711 copying build/lib/omicverse/datasets/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-06-13T14:05:52,714 copying build/lib/omicverse/datasets/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-13T14:05:52,716 copying build/lib/omicverse/datasets/_ambient.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-13T14:05:52,719 copying build/lib/omicverse/datasets/_protein.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-13T14:05:52,721 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-13T14:05:52,725 copying build/lib/omicverse/datasets/_airr.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-06-13T14:05:52,727 running install_egg_info 2026-06-13T14:05:52,733 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.2.3-py3.11.egg-info 2026-06-13T14:05:52,748 running install_scripts 2026-06-13T14:05:52,794 creating build/bdist.linux-armv7l/wheel/omicverse-2.2.3.dist-info/WHEEL 2026-06-13T14:05:52,797 creating '/tmp/pip-wheel-2j1mey_5/.tmp-rwy9z3fn/omicverse-2.2.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-13T14:05:52,801 adding 'omicverse/__init__.py' 2026-06-13T14:05:52,804 adding 'omicverse/_lazy_loader.py' 2026-06-13T14:05:52,806 adding 'omicverse/_monitor.py' 2026-06-13T14:05:52,808 adding 'omicverse/_oom_compat.py' 2026-06-13T14:05:52,810 adding 'omicverse/_optional.py' 2026-06-13T14:05:52,817 adding 'omicverse/_registry.py' 2026-06-13T14:05:52,823 adding 'omicverse/_settings.py' 2026-06-13T14:05:52,826 adding 'omicverse/claw.py' 2026-06-13T14:05:52,828 adding 'omicverse/cli.py' 2026-06-13T14:05:52,831 adding 'omicverse/agent/__init__.py' 2026-06-13T14:05:52,834 adding 'omicverse/airr/__init__.py' 2026-06-13T14:05:52,840 adding 'omicverse/airr/_bcr.py' 2026-06-13T14:05:52,847 adding 'omicverse/airr/_bulk.py' 2026-06-13T14:05:52,852 adding 'omicverse/airr/_clonotype.py' 2026-06-13T14:05:52,855 adding 'omicverse/airr/_metrics.py' 2026-06-13T14:05:52,857 adding 'omicverse/airr/_qc.py' 2026-06-13T14:05:52,866 adding 'omicverse/airr/_tcr.py' 2026-06-13T14:05:52,873 adding 'omicverse/airr/_tcr_gex.py' 2026-06-13T14:05:52,877 adding 'omicverse/airr/io.py' 2026-06-13T14:05:52,880 adding 'omicverse/airr/plotting.py' 2026-06-13T14:05:52,884 adding 'omicverse/alignment/STAR.py' 2026-06-13T14:05:52,885 adding 'omicverse/alignment/__init__.py' 2026-06-13T14:05:52,888 adding 'omicverse/alignment/_cli_utils.py' 2026-06-13T14:05:52,898 adding 'omicverse/alignment/_db.py' 2026-06-13T14:05:52,901 adding 'omicverse/alignment/amplicon_16s.py' 2026-06-13T14:05:52,904 adding 'omicverse/alignment/cutadapt.py' 2026-06-13T14:05:52,907 adding 'omicverse/alignment/dada2.py' 2026-06-13T14:05:52,912 adding 'omicverse/alignment/fastp.py' 2026-06-13T14:05:52,914 adding 'omicverse/alignment/fasttree.py' 2026-06-13T14:05:52,924 adding 'omicverse/alignment/featureCount.py' 2026-06-13T14:05:52,926 adding 'omicverse/alignment/fq_dump.py' 2026-06-13T14:05:52,930 adding 'omicverse/alignment/kb_api.py' 2026-06-13T14:05:52,931 adding 'omicverse/alignment/mafft.py' 2026-06-13T14:05:52,933 adding 'omicverse/alignment/phylogeny.py' 2026-06-13T14:05:52,934 adding 'omicverse/alignment/pipeline.py' 2026-06-13T14:05:52,936 adding 'omicverse/alignment/prefetch.py' 2026-06-13T14:05:52,939 adding 'omicverse/alignment/simpleaf.py' 2026-06-13T14:05:52,942 adding 'omicverse/alignment/vsearch.py' 2026-06-13T14:05:52,951 adding 'omicverse/bulk/_Deseq2.py' 2026-06-13T14:05:52,955 adding 'omicverse/bulk/_Enrichment.py' 2026-06-13T14:05:52,959 adding 'omicverse/bulk/_Gene_module.py' 2026-06-13T14:05:52,960 adding 'omicverse/bulk/__init__.py' 2026-06-13T14:05:53,002 adding 'omicverse/bulk/_chm13.py' 2026-06-13T14:05:53,007 adding 'omicverse/bulk/_combat.py' 2026-06-13T14:05:53,009 adding 'omicverse/bulk/_decov.py' 2026-06-13T14:05:53,010 adding 'omicverse/bulk/_df_apply.py' 2026-06-13T14:05:53,015 adding 'omicverse/bulk/_dynamicTree.py' 2026-06-13T14:05:53,018 adding 'omicverse/bulk/_enrich_plot.py' 2026-06-13T14:05:53,020 adding 'omicverse/bulk/_gsea_numpy.py' 2026-06-13T14:05:53,022 adding 'omicverse/bulk/_network.py' 2026-06-13T14:05:53,024 adding 'omicverse/bulk/_ora.py' 2026-06-13T14:05:53,026 adding 'omicverse/bulk/_tcga.py' 2026-06-13T14:05:53,028 adding 'omicverse/bulk/_wgcna.py' 2026-06-13T14:05:53,030 adding 'omicverse/bulk/_alignment/__init__.py' 2026-06-13T14:05:53,032 adding 'omicverse/bulk2single/__init__.py' 2026-06-13T14:05:53,036 adding 'omicverse/bulk2single/_bulk2single.py' 2026-06-13T14:05:53,037 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-06-13T14:05:53,040 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-06-13T14:05:53,045 adding 'omicverse/bulk2single/_map_utils.py' 2026-06-13T14:05:53,049 adding 'omicverse/bulk2single/_map_utils1.py' 2026-06-13T14:05:53,052 adding 'omicverse/bulk2single/_scsemi.py' 2026-06-13T14:05:53,054 adding 'omicverse/bulk2single/_single2spatial.py' 2026-06-13T14:05:53,056 adding 'omicverse/bulk2single/_utils.py' 2026-06-13T14:05:53,058 adding 'omicverse/bulk2single/_vae.py' 2026-06-13T14:05:53,060 adding 'omicverse/datasets/__init__.py' 2026-06-13T14:05:53,063 adding 'omicverse/datasets/_airr.py' 2026-06-13T14:05:53,064 adding 'omicverse/datasets/_ambient.py' 2026-06-13T14:05:53,071 adding 'omicverse/datasets/_datasets.py' 2026-06-13T14:05:53,072 adding 'omicverse/datasets/_ev.py' 2026-06-13T14:05:53,074 adding 'omicverse/datasets/_genetics.py' 2026-06-13T14:05:53,076 adding 'omicverse/datasets/_metabolism.py' 2026-06-13T14:05:53,077 adding 'omicverse/datasets/_protein.py' 2026-06-13T14:05:53,079 adding 'omicverse/datasets/_signatures.py' 2026-06-13T14:05:53,080 adding 'omicverse/datasets/_timecourse.py' 2026-06-13T14:05:53,082 adding 'omicverse/datasets/data_files/README.md' 2026-06-13T14:05:53,123 adding 'omicverse/datasets/data_files/features_model_training_17.csv' 2026-06-13T14:05:53,125 adding 'omicverse/datasets/data_files/human_alias_list.txt' 2026-06-13T14:05:53,641 adding 'omicverse/datasets/data_files/mart_export.txt' 2026-06-13T14:05:53,672 adding 'omicverse/datasets/data_files/smoothDatakNN.py' 2026-06-13T14:05:53,676 adding 'omicverse/datasets/data_files/TF/allTFs_human.txt' 2026-06-13T14:05:53,678 adding 'omicverse/datasets/data_files/TF/allTFs_mouse.txt' 2026-06-13T14:05:53,702 adding 'omicverse/datasets/data_files/TF/allTFs_zebrafish.txt' 2026-06-13T14:05:53,743 adding 'omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-06-13T14:05:53,784 adding 'omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-06-13T14:05:53,790 adding 'omicverse/epi/__init__.py' 2026-06-13T14:05:53,791 adding 'omicverse/epi/_utils.py' 2026-06-13T14:05:53,792 adding 'omicverse/epi/bulk.py' 2026-06-13T14:05:53,794 adding 'omicverse/epi/data.py' 2026-06-13T14:05:53,795 adding 'omicverse/epi/datasets.py' 2026-06-13T14:05:53,796 adding 'omicverse/epi/io.py' 2026-06-13T14:05:53,798 adding 'omicverse/epi/pl.py' 2026-06-13T14:05:53,799 adding 'omicverse/epi/pp.py' 2026-06-13T14:05:53,800 adding 'omicverse/epi/single.py' 2026-06-13T14:05:53,802 adding 'omicverse/epi/tl.py' 2026-06-13T14:05:53,803 adding 'omicverse/epi/upstream.py' 2026-06-13T14:05:53,805 adding 'omicverse/epi/utils.py' 2026-06-13T14:05:53,807 adding 'omicverse/es/__init__.py' 2026-06-13T14:05:53,809 adding 'omicverse/es/_aucell.py' 2026-06-13T14:05:53,811 adding 'omicverse/es/_consensus.py' 2026-06-13T14:05:53,812 adding 'omicverse/es/_data.py' 2026-06-13T14:05:53,814 adding 'omicverse/es/_datatype.py' 2026-06-13T14:05:53,815 adding 'omicverse/es/_decouple.py' 2026-06-13T14:05:53,819 adding 'omicverse/es/_engine.py' 2026-06-13T14:05:53,821 adding 'omicverse/es/_gsea.py' 2026-06-13T14:05:53,825 adding 'omicverse/es/_gsva.py' 2026-06-13T14:05:53,827 adding 'omicverse/es/_mdt.py' 2026-06-13T14:05:53,829 adding 'omicverse/es/_method.py' 2026-06-13T14:05:53,830 adding 'omicverse/es/_methods.py' 2026-06-13T14:05:53,832 adding 'omicverse/es/_mlm.py' 2026-06-13T14:05:53,834 adding 'omicverse/es/_net.py' 2026-06-13T14:05:53,836 adding 'omicverse/es/_odeps.py' 2026-06-13T14:05:53,838 adding 'omicverse/es/_ora.py' 2026-06-13T14:05:53,839 adding 'omicverse/es/_pv.py' 2026-06-13T14:05:53,841 adding 'omicverse/es/_query_set.py' 2026-06-13T14:05:53,842 adding 'omicverse/es/_run.py' 2026-06-13T14:05:53,845 adding 'omicverse/es/_ucell.py' 2026-06-13T14:05:53,847 adding 'omicverse/es/_udt.py' 2026-06-13T14:05:53,849 adding 'omicverse/es/_ulm.py' 2026-06-13T14:05:53,852 adding 'omicverse/es/_viper.py' 2026-06-13T14:05:53,854 adding 'omicverse/es/_waggr.py' 2026-06-13T14:05:53,856 adding 'omicverse/es/_zscore.py' 2026-06-13T14:05:53,860 adding 'omicverse/external/__init__.py' 2026-06-13T14:05:53,863 adding 'omicverse/external/torch_tsne.py' 2026-06-13T14:05:53,866 adding 'omicverse/external/BINARY/Model.py' 2026-06-13T14:05:53,867 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-06-13T14:05:53,868 adding 'omicverse/external/BINARY/__init__.py' 2026-06-13T14:05:53,871 adding 'omicverse/external/BINARY/utils.py' 2026-06-13T14:05:53,873 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-06-13T14:05:53,876 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-06-13T14:05:53,880 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-06-13T14:05:53,881 adding 'omicverse/external/CAST/__init__.py' 2026-06-13T14:05:53,884 adding 'omicverse/external/CAST/main.py' 2026-06-13T14:05:53,886 adding 'omicverse/external/CAST/utils.py' 2026-06-13T14:05:53,888 adding 'omicverse/external/CAST/visualize.py' 2026-06-13T14:05:53,890 adding 'omicverse/external/CAST/model/__init__.py' 2026-06-13T14:05:53,891 adding 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