2026-06-16T14:58:23,544 Created temporary directory: /tmp/pip-ephem-wheel-cache-l7k6hvk8 2026-06-16T14:58:23,546 Created temporary directory: /tmp/pip-build-tracker-3yjxunp4 2026-06-16T14:58:23,546 Initialized build tracking at /tmp/pip-build-tracker-3yjxunp4 2026-06-16T14:58:23,547 Created build tracker: /tmp/pip-build-tracker-3yjxunp4 2026-06-16T14:58:23,547 Entered build tracker: /tmp/pip-build-tracker-3yjxunp4 2026-06-16T14:58:23,548 Created temporary directory: /tmp/pip-wheel-lqty_9ug 2026-06-16T14:58:23,551 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-16T14:58:23,553 Created temporary directory: /tmp/pip-ephem-wheel-cache-2za3rido 2026-06-16T14:58:23,577 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-16T14:58:23,581 2 location(s) to search for versions of cdot: 2026-06-16T14:58:23,581 * https://pypi.org/simple/cdot/ 2026-06-16T14:58:23,581 * https://www.piwheels.org/simple/cdot/ 2026-06-16T14:58:23,581 Fetching project page and analyzing links: https://pypi.org/simple/cdot/ 2026-06-16T14:58:23,582 Getting page https://pypi.org/simple/cdot/ 2026-06-16T14:58:23,583 Found index url https://pypi.org/simple 2026-06-16T14:58:23,734 Fetched page https://pypi.org/simple/cdot/ as application/vnd.pypi.simple.v1+json 2026-06-16T14:58:23,743 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/3d/22/214ad62937068f36bf8cafa3bba79d1c7eb161a3dcc7580e4338b63fc544/cdot-0.1.1-py3-none-any.whl (from 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2026-06-16T14:58:23,755 Found link https://files.pythonhosted.org/packages/be/ef/d1dd63a51af2549d654554fd9aee97436ad7cca17ccce573cd94a1114469/cdot-0.2.8.tar.gz (from https://pypi.org/simple/cdot/) (requires-python:>=3.8), version: 0.2.8 2026-06-16T14:58:23,756 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/84/67/87a45c8c56165aa946ac2d6fe78b3ca384b4201e5c6b249ad164930fb7ec/cdot-0.2.9-py3-none-any.whl (from https://pypi.org/simple/cdot/) (requires-python:>=3.8) 2026-06-16T14:58:23,757 Found link https://files.pythonhosted.org/packages/db/ee/f890f3499ba1dd982d79757a7800fee7e82c526f3041e920b36e92033727/cdot-0.2.9.tar.gz (from https://pypi.org/simple/cdot/) (requires-python:>=3.8), version: 0.2.9 2026-06-16T14:58:23,757 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/58/5b/030c7e267cc8e5a56bccf4ef228f49d41e532c15abd49d5f68dc268df84f/cdot-0.2.10-py3-none-any.whl (from https://pypi.org/simple/cdot/) 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https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-16T14:58:23,965 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.6-py3-none-any.whl#sha256=9eb6099f071f2cbce859de907a7dc64e99979fc5a6986eb0393d3574e3b5d9d9 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-16T14:58:23,965 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.5-py3-none-any.whl#sha256=95b3f46e2bf11e295861813fcc0137b3fe58a92791c2e4631af124532d5323e2 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-16T14:58:23,966 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.3-py3-none-any.whl#sha256=a1d14da59850b5df181f40a7d2ffd41f81ebf07ac8395edb83d7aa4648a579ef (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-16T14:58:23,966 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.2-py3-none-any.whl#sha256=4f5f50ad4c6f9319a98026732ded7e99b336a4c1da5a7e70684f10cc852ef036 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-16T14:58:23,967 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.1-py3-none-any.whl#sha256=59571b8928689dc694a90ccd4d44d827dfe00eb09010328766cac3986f55b315 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-16T14:58:23,967 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.1.1-py3-none-any.whl#sha256=5d90d2b2abd202ce3a63e85c9dd7bb20658f273945be1c0af354e50a1971dc17 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-16T14:58:23,968 Skipping link: not a file: https://www.piwheels.org/simple/cdot/ 2026-06-16T14:58:23,969 Skipping link: not a file: https://pypi.org/simple/cdot/ 2026-06-16T14:58:23,990 Given no hashes to check 1 links for project 'cdot': discarding no candidates 2026-06-16T14:58:24,008 Collecting cdot==0.2.27 2026-06-16T14:58:24,011 Created temporary directory: /tmp/pip-unpack-t1deefqo 2026-06-16T14:58:24,252 Downloading cdot-0.2.27.tar.gz (62 kB) 2026-06-16T14:58:24,381 Added cdot==0.2.27 from https://files.pythonhosted.org/packages/1e/79/ad6f85eaf9b3515be46173ab1f59a888ce6f690a5a1c26adf8c174751e56/cdot-0.2.27.tar.gz to build tracker '/tmp/pip-build-tracker-3yjxunp4' 2026-06-16T14:58:24,386 Created temporary directory: /tmp/pip-build-env-cr6atph5 2026-06-16T14:58:24,391 Installing build dependencies: started 2026-06-16T14:58:24,392 Running command pip subprocess to install build dependencies 2026-06-16T14:58:25,570 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-16T14:58:25,985 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-16T14:58:26,008 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-16T14:58:27,827 Collecting setuptools>=42 2026-06-16T14:58:27,829 Obtaining dependency information for setuptools>=42 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-16T14:58:27,844 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-16T14:58:28,078 Collecting wheel 2026-06-16T14:58:28,079 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-06-16T14:58:28,093 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-06-16T14:58:28,278 Collecting packaging>=24.0 2026-06-16T14:58:28,279 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-06-16T14:58:28,292 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-06-16T14:58:28,482 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-16T14:58:28,501 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-16T14:58:28,587 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-16T14:58:28,627 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-16T14:58:28,653 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-16T14:58:28,745 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-16T14:58:31,513 Installing collected packages: setuptools, packaging, wheel 2026-06-16T14:58:34,958 Creating /tmp/pip-build-env-cr6atph5/overlay/local/bin 2026-06-16T14:58:34,961 changing mode of /tmp/pip-build-env-cr6atph5/overlay/local/bin/wheel to 755 2026-06-16T14:58:34,982 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-06-16T14:58:35,266 Installing build dependencies: finished with status 'done' 2026-06-16T14:58:35,272 Getting requirements to build wheel: started 2026-06-16T14:58:35,273 Running command Getting requirements to build wheel 2026-06-16T14:58:35,889 /tmp/pip-build-env-cr6atph5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-16T14:58:35,889 !! 2026-06-16T14:58:35,890 ******************************************************************************** 2026-06-16T14:58:35,891 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-16T14:58:35,892 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-16T14:58:35,893 or your builds will no longer be supported. 2026-06-16T14:58:35,894 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T14:58:35,894 ******************************************************************************** 2026-06-16T14:58:35,895 !! 2026-06-16T14:58:35,895 corresp(dist, value, root_dir) 2026-06-16T14:58:35,966 /tmp/pip-build-env-cr6atph5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-16T14:58:35,967 !! 2026-06-16T14:58:35,968 ******************************************************************************** 2026-06-16T14:58:35,968 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-16T14:58:35,969 License :: OSI Approved :: MIT License 2026-06-16T14:58:35,970 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T14:58:35,970 ******************************************************************************** 2026-06-16T14:58:35,971 !! 2026-06-16T14:58:35,972 dist._finalize_license_expression() 2026-06-16T14:58:35,972 /tmp/pip-build-env-cr6atph5/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-16T14:58:35,973 !! 2026-06-16T14:58:35,974 ******************************************************************************** 2026-06-16T14:58:35,974 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-16T14:58:35,976 License :: OSI Approved :: MIT License 2026-06-16T14:58:35,977 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T14:58:35,977 ******************************************************************************** 2026-06-16T14:58:35,979 !! 2026-06-16T14:58:35,979 self._finalize_license_expression() 2026-06-16T14:58:35,980 running egg_info 2026-06-16T14:58:35,982 writing cdot.egg-info/PKG-INFO 2026-06-16T14:58:35,987 writing dependency_links to cdot.egg-info/dependency_links.txt 2026-06-16T14:58:35,990 writing requirements to cdot.egg-info/requires.txt 2026-06-16T14:58:35,992 writing top-level names to cdot.egg-info/top_level.txt 2026-06-16T14:58:36,015 reading manifest file 'cdot.egg-info/SOURCES.txt' 2026-06-16T14:58:36,019 adding license file 'LICENSE' 2026-06-16T14:58:36,023 writing manifest file 'cdot.egg-info/SOURCES.txt' 2026-06-16T14:58:36,120 Getting requirements to build wheel: finished with status 'done' 2026-06-16T14:58:36,123 Created temporary directory: /tmp/pip-modern-metadata-ueq0xqc6 2026-06-16T14:58:36,125 Preparing metadata (pyproject.toml): started 2026-06-16T14:58:36,127 Running command Preparing metadata (pyproject.toml) 2026-06-16T14:58:36,686 /tmp/pip-build-env-cr6atph5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-16T14:58:36,686 !! 2026-06-16T14:58:36,687 ******************************************************************************** 2026-06-16T14:58:36,688 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-16T14:58:36,689 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-16T14:58:36,690 or your builds will no longer be supported. 2026-06-16T14:58:36,691 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T14:58:36,692 ******************************************************************************** 2026-06-16T14:58:36,692 !! 2026-06-16T14:58:36,693 corresp(dist, value, root_dir) 2026-06-16T14:58:36,760 /tmp/pip-build-env-cr6atph5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-16T14:58:36,761 !! 2026-06-16T14:58:36,762 ******************************************************************************** 2026-06-16T14:58:36,762 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-16T14:58:36,763 License :: OSI Approved :: MIT License 2026-06-16T14:58:36,764 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T14:58:36,764 ******************************************************************************** 2026-06-16T14:58:36,765 !! 2026-06-16T14:58:36,766 dist._finalize_license_expression() 2026-06-16T14:58:36,766 /tmp/pip-build-env-cr6atph5/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-16T14:58:36,767 !! 2026-06-16T14:58:36,768 ******************************************************************************** 2026-06-16T14:58:36,768 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-16T14:58:36,769 License :: OSI Approved :: MIT License 2026-06-16T14:58:36,771 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T14:58:36,771 ******************************************************************************** 2026-06-16T14:58:36,772 !! 2026-06-16T14:58:36,773 self._finalize_license_expression() 2026-06-16T14:58:36,774 running dist_info 2026-06-16T14:58:36,781 creating /tmp/pip-modern-metadata-ueq0xqc6/cdot.egg-info 2026-06-16T14:58:36,782 writing /tmp/pip-modern-metadata-ueq0xqc6/cdot.egg-info/PKG-INFO 2026-06-16T14:58:36,788 writing dependency_links to /tmp/pip-modern-metadata-ueq0xqc6/cdot.egg-info/dependency_links.txt 2026-06-16T14:58:36,791 writing requirements to /tmp/pip-modern-metadata-ueq0xqc6/cdot.egg-info/requires.txt 2026-06-16T14:58:36,792 writing top-level names to /tmp/pip-modern-metadata-ueq0xqc6/cdot.egg-info/top_level.txt 2026-06-16T14:58:36,793 writing manifest file '/tmp/pip-modern-metadata-ueq0xqc6/cdot.egg-info/SOURCES.txt' 2026-06-16T14:58:36,814 reading manifest file '/tmp/pip-modern-metadata-ueq0xqc6/cdot.egg-info/SOURCES.txt' 2026-06-16T14:58:36,816 adding license file 'LICENSE' 2026-06-16T14:58:36,819 writing manifest file '/tmp/pip-modern-metadata-ueq0xqc6/cdot.egg-info/SOURCES.txt' 2026-06-16T14:58:36,820 creating '/tmp/pip-modern-metadata-ueq0xqc6/cdot-0.2.27.dist-info' 2026-06-16T14:58:36,942 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-16T14:58:36,947 Source in /tmp/pip-wheel-lqty_9ug/cdot_82cdf3e2171346cf9d0e79ce3f406a1e has version 0.2.27, which satisfies requirement cdot==0.2.27 from https://files.pythonhosted.org/packages/1e/79/ad6f85eaf9b3515be46173ab1f59a888ce6f690a5a1c26adf8c174751e56/cdot-0.2.27.tar.gz 2026-06-16T14:58:36,948 Removed cdot==0.2.27 from https://files.pythonhosted.org/packages/1e/79/ad6f85eaf9b3515be46173ab1f59a888ce6f690a5a1c26adf8c174751e56/cdot-0.2.27.tar.gz from build tracker '/tmp/pip-build-tracker-3yjxunp4' 2026-06-16T14:58:36,954 Created temporary directory: /tmp/pip-unpack-l_wsiihj 2026-06-16T14:58:36,954 Building wheels for collected packages: cdot 2026-06-16T14:58:36,958 Created temporary directory: /tmp/pip-wheel-yebdz5xf 2026-06-16T14:58:36,959 Destination directory: /tmp/pip-wheel-yebdz5xf 2026-06-16T14:58:36,961 Building wheel for cdot (pyproject.toml): started 2026-06-16T14:58:36,962 Running command Building wheel for cdot (pyproject.toml) 2026-06-16T14:58:37,505 /tmp/pip-build-env-cr6atph5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-16T14:58:37,506 !! 2026-06-16T14:58:37,507 ******************************************************************************** 2026-06-16T14:58:37,507 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-16T14:58:37,508 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-16T14:58:37,508 or your builds will no longer be supported. 2026-06-16T14:58:37,509 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T14:58:37,510 ******************************************************************************** 2026-06-16T14:58:37,511 !! 2026-06-16T14:58:37,511 corresp(dist, value, root_dir) 2026-06-16T14:58:37,574 /tmp/pip-build-env-cr6atph5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-16T14:58:37,575 !! 2026-06-16T14:58:37,576 ******************************************************************************** 2026-06-16T14:58:37,576 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-16T14:58:37,577 License :: OSI Approved :: MIT License 2026-06-16T14:58:37,578 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T14:58:37,579 ******************************************************************************** 2026-06-16T14:58:37,580 !! 2026-06-16T14:58:37,580 dist._finalize_license_expression() 2026-06-16T14:58:37,581 /tmp/pip-build-env-cr6atph5/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-16T14:58:37,581 !! 2026-06-16T14:58:37,582 ******************************************************************************** 2026-06-16T14:58:37,583 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-16T14:58:37,584 License :: OSI Approved :: MIT License 2026-06-16T14:58:37,585 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T14:58:37,586 ******************************************************************************** 2026-06-16T14:58:37,587 !! 2026-06-16T14:58:37,587 self._finalize_license_expression() 2026-06-16T14:58:37,588 running bdist_wheel 2026-06-16T14:58:37,600 running build 2026-06-16T14:58:37,601 running build_py 2026-06-16T14:58:37,607 creating build/lib/cdot 2026-06-16T14:58:37,609 copying cdot/__init__.py -> build/lib/cdot 2026-06-16T14:58:37,611 copying cdot/models.py -> build/lib/cdot 2026-06-16T14:58:37,613 copying cdot/data_release.py -> build/lib/cdot 2026-06-16T14:58:37,616 creating build/lib/analysis 2026-06-16T14:58:37,617 copying analysis/clean_hgvs_search_csvs.py -> build/lib/analysis 2026-06-16T14:58:37,619 copying analysis/compute_coverage.py -> build/lib/analysis 2026-06-16T14:58:37,621 copying analysis/investigate_fails.py -> build/lib/analysis 2026-06-16T14:58:37,623 copying analysis/combine_csv.py -> build/lib/analysis 2026-06-16T14:58:37,625 copying analysis/compute_benchmark.py -> build/lib/analysis 2026-06-16T14:58:37,627 creating build/lib/cdot/hgvs 2026-06-16T14:58:37,628 copying cdot/hgvs/__init__.py -> build/lib/cdot/hgvs 2026-06-16T14:58:37,630 copying cdot/hgvs/clean.py -> build/lib/cdot/hgvs 2026-06-16T14:58:37,633 copying cdot/hgvs/gene_hgvs.py -> build/lib/cdot/hgvs 2026-06-16T14:58:37,636 creating build/lib/cdot/pyhgvs 2026-06-16T14:58:37,637 copying cdot/pyhgvs/__init__.py -> build/lib/cdot/pyhgvs 2026-06-16T14:58:37,638 copying cdot/pyhgvs/pyhgvs_transcript.py -> build/lib/cdot/pyhgvs 2026-06-16T14:58:37,641 creating build/lib/cdot/hgvs/dataproviders 2026-06-16T14:58:37,642 copying cdot/hgvs/dataproviders/__init__.py -> build/lib/cdot/hgvs/dataproviders 2026-06-16T14:58:37,644 copying cdot/hgvs/dataproviders/fasta_seqfetcher.py -> build/lib/cdot/hgvs/dataproviders 2026-06-16T14:58:37,646 copying cdot/hgvs/dataproviders/seqfetcher.py -> build/lib/cdot/hgvs/dataproviders 2026-06-16T14:58:37,648 copying cdot/hgvs/dataproviders/json_data_provider.py -> build/lib/cdot/hgvs/dataproviders 2026-06-16T14:58:37,651 copying cdot/hgvs/dataproviders/ensembl_tark_data_provider.py -> build/lib/cdot/hgvs/dataproviders 2026-06-16T14:58:37,653 running egg_info 2026-06-16T14:58:37,662 writing cdot.egg-info/PKG-INFO 2026-06-16T14:58:37,667 writing dependency_links to cdot.egg-info/dependency_links.txt 2026-06-16T14:58:37,669 writing requirements to cdot.egg-info/requires.txt 2026-06-16T14:58:37,670 writing top-level names to cdot.egg-info/top_level.txt 2026-06-16T14:58:37,682 reading manifest file 'cdot.egg-info/SOURCES.txt' 2026-06-16T14:58:37,686 adding license file 'LICENSE' 2026-06-16T14:58:37,689 writing manifest file 'cdot.egg-info/SOURCES.txt' 2026-06-16T14:58:37,703 installing to build/bdist.linux-armv7l/wheel 2026-06-16T14:58:37,704 running install 2026-06-16T14:58:37,728 running install_lib 2026-06-16T14:58:37,733 creating build/bdist.linux-armv7l/wheel 2026-06-16T14:58:37,735 creating build/bdist.linux-armv7l/wheel/cdot 2026-06-16T14:58:37,737 creating build/bdist.linux-armv7l/wheel/cdot/hgvs 2026-06-16T14:58:37,738 copying build/lib/cdot/hgvs/__init__.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs 2026-06-16T14:58:37,740 creating build/bdist.linux-armv7l/wheel/cdot/hgvs/dataproviders 2026-06-16T14:58:37,741 copying build/lib/cdot/hgvs/dataproviders/__init__.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs/dataproviders 2026-06-16T14:58:37,743 copying build/lib/cdot/hgvs/dataproviders/fasta_seqfetcher.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs/dataproviders 2026-06-16T14:58:37,745 copying build/lib/cdot/hgvs/dataproviders/seqfetcher.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs/dataproviders 2026-06-16T14:58:37,747 copying build/lib/cdot/hgvs/dataproviders/json_data_provider.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs/dataproviders 2026-06-16T14:58:37,750 copying build/lib/cdot/hgvs/dataproviders/ensembl_tark_data_provider.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs/dataproviders 2026-06-16T14:58:37,752 copying build/lib/cdot/hgvs/clean.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs 2026-06-16T14:58:37,755 copying build/lib/cdot/hgvs/gene_hgvs.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs 2026-06-16T14:58:37,758 copying build/lib/cdot/__init__.py -> build/bdist.linux-armv7l/wheel/./cdot 2026-06-16T14:58:37,759 copying build/lib/cdot/models.py -> build/bdist.linux-armv7l/wheel/./cdot 2026-06-16T14:58:37,762 creating build/bdist.linux-armv7l/wheel/cdot/pyhgvs 2026-06-16T14:58:37,763 copying build/lib/cdot/pyhgvs/__init__.py -> build/bdist.linux-armv7l/wheel/./cdot/pyhgvs 2026-06-16T14:58:37,765 copying build/lib/cdot/pyhgvs/pyhgvs_transcript.py -> build/bdist.linux-armv7l/wheel/./cdot/pyhgvs 2026-06-16T14:58:37,767 copying build/lib/cdot/data_release.py -> build/bdist.linux-armv7l/wheel/./cdot 2026-06-16T14:58:37,769 creating build/bdist.linux-armv7l/wheel/analysis 2026-06-16T14:58:37,770 copying build/lib/analysis/clean_hgvs_search_csvs.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-16T14:58:37,772 copying build/lib/analysis/compute_coverage.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-16T14:58:37,774 copying build/lib/analysis/investigate_fails.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-16T14:58:37,776 copying build/lib/analysis/combine_csv.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-16T14:58:37,778 copying build/lib/analysis/compute_benchmark.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-16T14:58:37,780 running install_egg_info 2026-06-16T14:58:37,784 Copying cdot.egg-info to build/bdist.linux-armv7l/wheel/./cdot-0.2.27-py3.11.egg-info 2026-06-16T14:58:37,794 running install_scripts 2026-06-16T14:58:37,803 creating build/bdist.linux-armv7l/wheel/cdot-0.2.27.dist-info/WHEEL 2026-06-16T14:58:37,806 creating '/tmp/pip-wheel-yebdz5xf/.tmp-2z0gd8ll/cdot-0.2.27-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-16T14:58:37,809 adding 'analysis/clean_hgvs_search_csvs.py' 2026-06-16T14:58:37,810 adding 'analysis/combine_csv.py' 2026-06-16T14:58:37,811 adding 'analysis/compute_benchmark.py' 2026-06-16T14:58:37,813 adding 'analysis/compute_coverage.py' 2026-06-16T14:58:37,814 adding 'analysis/investigate_fails.py' 2026-06-16T14:58:37,816 adding 'cdot/__init__.py' 2026-06-16T14:58:37,817 adding 'cdot/data_release.py' 2026-06-16T14:58:37,819 adding 'cdot/models.py' 2026-06-16T14:58:37,821 adding 'cdot/hgvs/__init__.py' 2026-06-16T14:58:37,825 adding 'cdot/hgvs/clean.py' 2026-06-16T14:58:37,827 adding 'cdot/hgvs/gene_hgvs.py' 2026-06-16T14:58:37,829 adding 'cdot/hgvs/dataproviders/__init__.py' 2026-06-16T14:58:37,831 adding 'cdot/hgvs/dataproviders/ensembl_tark_data_provider.py' 2026-06-16T14:58:37,833 adding 'cdot/hgvs/dataproviders/fasta_seqfetcher.py' 2026-06-16T14:58:37,837 adding 'cdot/hgvs/dataproviders/json_data_provider.py' 2026-06-16T14:58:37,838 adding 'cdot/hgvs/dataproviders/seqfetcher.py' 2026-06-16T14:58:37,840 adding 'cdot/pyhgvs/__init__.py' 2026-06-16T14:58:37,841 adding 'cdot/pyhgvs/pyhgvs_transcript.py' 2026-06-16T14:58:37,844 adding 'cdot-0.2.27.dist-info/licenses/LICENSE' 2026-06-16T14:58:37,845 adding 'cdot-0.2.27.dist-info/METADATA' 2026-06-16T14:58:37,846 adding 'cdot-0.2.27.dist-info/WHEEL' 2026-06-16T14:58:37,847 adding 'cdot-0.2.27.dist-info/top_level.txt' 2026-06-16T14:58:37,848 adding 'cdot-0.2.27.dist-info/RECORD' 2026-06-16T14:58:37,850 removing build/bdist.linux-armv7l/wheel 2026-06-16T14:58:37,956 Building wheel for cdot (pyproject.toml): finished with status 'done' 2026-06-16T14:58:37,962 Created wheel for cdot: filename=cdot-0.2.27-py3-none-any.whl size=49684 sha256=f58473c33a5fe4bf51bea796bf0bdf6985ba4d923ed25310127c3d78e8b6ee58 2026-06-16T14:58:37,963 Stored in directory: /tmp/pip-ephem-wheel-cache-2za3rido/wheels/0f/0b/e0/b8e310a43ea114ba835a57e3ec58019495cdfbd89a6033a7f9 2026-06-16T14:58:37,975 Successfully built cdot 2026-06-16T14:58:37,979 Removed build tracker: '/tmp/pip-build-tracker-3yjxunp4'