2026-06-16T17:09:05,248 Created temporary directory: /tmp/pip-ephem-wheel-cache-htq9vxq0 2026-06-16T17:09:05,250 Created temporary directory: /tmp/pip-build-tracker-t86xsp4c 2026-06-16T17:09:05,250 Initialized build tracking at /tmp/pip-build-tracker-t86xsp4c 2026-06-16T17:09:05,251 Created build tracker: /tmp/pip-build-tracker-t86xsp4c 2026-06-16T17:09:05,251 Entered build tracker: /tmp/pip-build-tracker-t86xsp4c 2026-06-16T17:09:05,252 Created temporary directory: /tmp/pip-wheel-ktxrazzc 2026-06-16T17:09:05,255 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-16T17:09:05,257 Created temporary directory: /tmp/pip-ephem-wheel-cache-oqz9finq 2026-06-16T17:09:05,279 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-16T17:09:05,283 2 location(s) to search for versions of biobb-structure-checking: 2026-06-16T17:09:05,283 * https://pypi.org/simple/biobb-structure-checking/ 2026-06-16T17:09:05,283 * https://www.piwheels.org/simple/biobb-structure-checking/ 2026-06-16T17:09:05,284 Fetching project page and analyzing links: https://pypi.org/simple/biobb-structure-checking/ 2026-06-16T17:09:05,284 Getting page https://pypi.org/simple/biobb-structure-checking/ 2026-06-16T17:09:05,286 Found index url https://pypi.org/simple 2026-06-16T17:09:05,619 Fetched page https://pypi.org/simple/biobb-structure-checking/ as application/vnd.pypi.simple.v1+json 2026-06-16T17:09:05,634 Skipping link: No binaries permitted for biobb-structure-checking: 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https://files.pythonhosted.org/packages/39/6b/55e1c27621bfce13456eda9ee174a696da84ab5085b892fef791f217fbf3/biobb_structure_checking-1.0.5-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2026-06-16T17:09:05,638 Link requires a different Python (3.11.2 not in: '==3.6.*'): https://files.pythonhosted.org/packages/2f/18/132f1dfff6687115bc639ff77bdd1da0734bb2dccffa540eaaccb2c7f2ce/biobb_structure_checking-1.0.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2026-06-16T17:09:05,638 Skipping link: 1.0.5 Requires-Python ==3.6.*: https://files.pythonhosted.org/packages/2f/18/132f1dfff6687115bc639ff77bdd1da0734bb2dccffa540eaaccb2c7f2ce/biobb_structure_checking-1.0.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2026-06-16T17:09:05,639 Skipping link: No binaries permitted for biobb-structure-checking: 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https://files.pythonhosted.org/packages/a5/b8/c199ea26acefce9148b2f039228a6445bfd99cbf3baa5aac5d5de76d88d2/biobb_structure_checking-3.5.3-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,656 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/0a/40/352e4eef5795daea5bac5a015dec9895ae437a2cba75aed4a45e3af0ce76/biobb_structure_checking-3.5.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,657 Skipping link: 3.5.3 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/0a/40/352e4eef5795daea5bac5a015dec9895ae437a2cba75aed4a45e3af0ce76/biobb_structure_checking-3.5.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,658 Skipping link: No binaries permitted for biobb-structure-checking: 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https://files.pythonhosted.org/packages/61/37/9b0ff6d7f2fa5f2a7e5ca2a614ade65edf33e3351c42b2d974896bd59932/biobb_structure_checking-3.9.9.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,682 Skipping link: 3.9.9 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/61/37/9b0ff6d7f2fa5f2a7e5ca2a614ade65edf33e3351c42b2d974896bd59932/biobb_structure_checking-3.9.9.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,683 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/a3/43/cd861c5cc8ecc3476d8ae3e474acb8f98ab0c9da99b812d19c5451d00ccf/biobb_structure_checking-3.9.10-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,683 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/0d/31/19dc942015efa8dadb519d1a330054864eaa9178affd67cedaaa61160016/biobb_structure_checking-3.9.10.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,684 Skipping link: 3.9.10 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/0d/31/19dc942015efa8dadb519d1a330054864eaa9178affd67cedaaa61160016/biobb_structure_checking-3.9.10.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,684 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/9e/99/6a7991ad252d275113a51e1225df5e202f3b99b4ebd86940c26d86e382d3/biobb_structure_checking-3.9.11-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,685 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/d0/ca/93e5d1f2d75b0f99a578bc7a0bb8519dc073e2905dec5a0a6e95d7e991a4/biobb_structure_checking-3.9.11.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,686 Skipping link: 3.9.11 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/d0/ca/93e5d1f2d75b0f99a578bc7a0bb8519dc073e2905dec5a0a6e95d7e991a4/biobb_structure_checking-3.9.11.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:05,687 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/dc/66/9aee0a636ffa94d89c495468d61607790162ec26a278ec4cabb82410c93a/biobb_structure_checking-3.10.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:05,688 Found link https://files.pythonhosted.org/packages/0c/ad/2a27428424df13356f63f38ad70411199857e08a2e2cb1aa6e1d98d58d56/biobb_structure_checking-3.10.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.10.0 2026-06-16T17:09:05,688 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/2f/89/ab802a1e0ae870998435b8136529c43ca8eea9a106eacd170d547c5ccc6f/biobb_structure_checking-3.10.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:05,689 Found link https://files.pythonhosted.org/packages/a8/33/9ede62a4f16048d2a24d4261cdb6489ad653385e3ef851c9cbf904346493/biobb_structure_checking-3.10.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.10.1 2026-06-16T17:09:05,690 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/80/97/11822214f8649f0cf944468fe32461f46dc219b9a80c804cd93e2841496b/biobb_structure_checking-3.12.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:05,691 Found link https://files.pythonhosted.org/packages/f5/c1/8fe39123366ae2b1ff9806667185da01871878a3acc419d1f02fc0713aa0/biobb_structure_checking-3.12.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.12.0 2026-06-16T17:09:05,692 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/e0/72/0e3893b0ed4846d2237228c73378519a122e9e782bc0536bd3fc3be79501/biobb_structure_checking-3.12.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:05,693 Found link https://files.pythonhosted.org/packages/8e/a3/9e01147d4b0244435d143bdc70f6520b01394ae4622eecd7dfcec6f1ebcf/biobb_structure_checking-3.12.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.12.1 2026-06-16T17:09:05,693 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/c2/19/f28556efe1a066317fbe8ac794784e072e1971ae45ef27ca460f97cc0f23/biobb_structure_checking-3.13.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:05,694 Found link https://files.pythonhosted.org/packages/af/6b/580b883d738e617b7c12ae6eb5b02fc638be22b6abf67dc263927d48be6c/biobb_structure_checking-3.13.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.13.0 2026-06-16T17:09:05,694 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/ab/15/5a80821e138fdb530c89d24ef8d53d2283ac666a56f7c824cfbad94fd321/biobb_structure_checking-3.13.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:05,695 Found link https://files.pythonhosted.org/packages/78/3e/74d52a0ca14ee3a3cecc97011b790982d615897af38d20f4dde1a69603aa/biobb_structure_checking-3.13.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.13.1 2026-06-16T17:09:05,696 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/8e/77/0c113c7d98a63754e9ddd924485eef5576699663b81389a87bd9dcd4f15e/biobb_structure_checking-3.13.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:05,697 Found link 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https://files.pythonhosted.org/packages/42/30/c3abd1652f1ab2f01b9ea438b0398bb247f9d85e4cf193abcb38b68f4ef6/biobb_structure_checking-3.13.4-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-06-16T17:09:05,700 Found link https://files.pythonhosted.org/packages/52/c8/fbde8e5c8502699a5f85837298acefc14a198b31d30e3d87fde18fa6f169/biobb_structure_checking-3.13.4.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8), version: 3.13.4 2026-06-16T17:09:05,701 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/93/e8/c8eddb1e4996aebc703ed6344131861d54e763184f82a3b61c4dae4c68f2/biobb_structure_checking-3.13.5-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-06-16T17:09:05,702 Found link https://files.pythonhosted.org/packages/fb/27/8cf9b68cb39e063a373b87ba8881d888dd8b6449dfce5b6a3605f095128d/biobb_structure_checking-3.13.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8), version: 3.13.5 2026-06-16T17:09:05,703 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/93/46/c97cecdb5d82490f01e90458255d7afdd84d309e260f0a037757a9d898ae/biobb_structure_checking-3.15.6-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-06-16T17:09:05,704 Found link https://files.pythonhosted.org/packages/a2/86/ac0784d3a4a544ebc2275d36dd15daad21d079c0f7105d7001b4041df045/biobb_structure_checking-3.15.6.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8), version: 3.15.6 2026-06-16T17:09:05,704 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/c6/cc/8d41be69fa53b9774fa9c93fddbe8d36de6bbc7ddeabf7b886bb752925a3/biobb_structure_checking-3.16.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.9) 2026-06-16T17:09:05,705 Found link https://files.pythonhosted.org/packages/b2/8c/e3743fc9913ce678190cb90d9e6a68c7c16bfdaa07a01b0ee23e9ef571a3/biobb_structure_checking-3.16.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.9), version: 3.16.1 2026-06-16T17:09:05,706 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-structure-checking/ 2026-06-16T17:09:05,706 Getting page https://www.piwheels.org/simple/biobb-structure-checking/ 2026-06-16T17:09:05,708 Found index url https://www.piwheels.org/simple 2026-06-16T17:09:05,989 Fetched page https://www.piwheels.org/simple/biobb-structure-checking/ as text/html 2026-06-16T17:09:06,000 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.15.6-py3-none-any.whl#sha256=c09b75b465fa7da9c888d5a32c787bef17f284d6fd4bad76e4183b5ce5c3d8f1 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-06-16T17:09:06,000 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.13.5-py3-none-any.whl#sha256=1ff104b980ff49db450933410402e9471cf481f034023b537a0f82a92354575e (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-06-16T17:09:06,001 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.13.4-py3-none-any.whl#sha256=8d2b47747a65b20b93e01648bf9f7d6209224d92b9df1262fd7ccbc340c5b499 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-06-16T17:09:06,002 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.13.3-py3-none-any.whl#sha256=ec039ad45dae0c6b2c25a799253ba784f1faa135e6225031a1251788adbd0700 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:06,002 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.13.2-py3-none-any.whl#sha256=57f7e1ae103cacaee211207c003314e75371ab2e8389ad0969cb569bef30c95b (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:06,003 Skipping link: No binaries permitted for biobb-structure-checking: 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2026-06-16T17:09:06,005 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.12.0-py3-none-any.whl#sha256=3205b198d75f26e80e2fb59bedcfb9f1edfabcc337b5ab16a9261107e6a25a9e (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:06,005 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.10.1-py3-none-any.whl#sha256=8edd75d0ff29bb737e8c0eb8b0d3afaa0ce321452921e584a8f29ac11910e00a (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:06,005 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.10.0-py3-none-any.whl#sha256=da2a762d7c3087d3dcb50581ab75dbdef6f3b7920a674fd900f210fe66305c86 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-06-16T17:09:06,006 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.11-py3-none-any.whl#sha256=59a99c0fa789ccb8993b3aa8b7a39783e24f49556bdb1392ba274a12a8ae06ce (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:06,007 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.10-py3-none-any.whl#sha256=6229a9c090a560f835fa166f7557157dc0e21d797c8cc46d6ec94d7a23256d51 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:06,007 Skipping link: No binaries permitted for biobb-structure-checking: 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2026-06-16T17:09:06,009 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.6-py3-none-any.whl#sha256=06d44fa470872ecb6149b0ae2f31078e42b0f3945a75f1dfee91c88823c06597 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:06,010 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.5-py3-none-any.whl#sha256=582d529a2c847f6c8cfc0afd2f51699bbd60bc0f1fadbfcb277dfb363253caf7 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:06,011 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.4-py3-none-any.whl#sha256=59e51320caa1bdc56677fb8db25e9ce9ced398c5e4b0a026617be8844df1a6d3 (from https://www.piwheels.org/simple/biobb-structure-checking/) 2026-06-16T17:09:06,011 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.3-py3-none-any.whl#sha256=bcd1ac36892c14f7cffef48805c07dedeace4f7d94add1a5c3d57b5fc064ceaa (from https://www.piwheels.org/simple/biobb-structure-checking/) 2026-06-16T17:09:06,012 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.2-py3-none-any.whl#sha256=333b156968b057501ca2b331c021dae957bffe4a63766de01b2c69f2f6715680 (from https://www.piwheels.org/simple/biobb-structure-checking/) 2026-06-16T17:09:06,012 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.1-py3-none-any.whl#sha256=3e9cc73943fd2fce1e5889acfd325e4405c80017d479b9276f422c04df745f1c (from https://www.piwheels.org/simple/biobb-structure-checking/) 2026-06-16T17:09:06,013 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.8.5-py3-none-any.whl#sha256=5db5ad249dcde45660778f6b2af7511367e5d712f21a2918d0a3ef878b1ad93e (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2026-06-16T17:09:06,013 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.3-py3-none-any.whl#sha256=171c66ce739cf98c9e748a32426353cff168927e4955c9a89538d2c8781be485 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2026-06-16T17:09:06,014 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.2-py3-none-any.whl#sha256=0951c702b05d2f61693b25cab0cf3b9bd46c11381048f3ad7af6c58bb7403810 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2026-06-16T17:09:06,014 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.1-py3-none-any.whl#sha256=a837ba4af81fd98a21e85719e595845d693dfee2a2513c504d243809ea163825 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2026-06-16T17:09:06,015 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.0-py3-none-any.whl#sha256=7c51b36c5f52e0addd64f3b7ec0c3e3f6ce43d95ae8d24d452c135e2650b7242 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.5) 2026-06-16T17:09:06,016 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.5.3-py3-none-any.whl#sha256=8f9443b0614b6d0c9b895612d995e36ce8d4d35a52b9de45b0587cb6007ea104 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:06,016 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.5.2-py3-none-any.whl#sha256=27db7be134a0b373dd67dacc9ae5116f2f57709945749df6a2950ea91a9c83c9 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:06,017 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.5.0-py3-none-any.whl#sha256=9076b15d538fdac6ade33a2a1b514b8fd1d64851e84ca2941390851dc3d7372e (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:06,017 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.0.2-py3-none-any.whl#sha256=d9c71e4c12c116a92db4e5bfc2c869ac06b270f07d10c15f86c7db1bf0510125 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:06,018 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.0.1-py3-none-any.whl#sha256=4dfd2c0acabfa01f77c89c67040ff349d90f919c38e0300b3e1f1ef4bba07b97 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:06,018 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.0.0-py3-none-any.whl#sha256=4360463771a60a95ecbb4397df8c57f7b889dda78c87d50508629149b60726e0 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-06-16T17:09:06,019 Skipping link: not a file: https://www.piwheels.org/simple/biobb-structure-checking/ 2026-06-16T17:09:06,020 Skipping link: not a file: https://pypi.org/simple/biobb-structure-checking/ 2026-06-16T17:09:06,041 Given no hashes to check 1 links for project 'biobb-structure-checking': discarding no candidates 2026-06-16T17:09:06,058 Collecting biobb-structure-checking==3.16.1 2026-06-16T17:09:06,061 Created temporary directory: /tmp/pip-unpack-xcqfhlzh 2026-06-16T17:09:06,309 Downloading biobb_structure_checking-3.16.1.tar.gz (175 kB) 2026-06-16T17:09:06,612 Added biobb-structure-checking==3.16.1 from https://files.pythonhosted.org/packages/b2/8c/e3743fc9913ce678190cb90d9e6a68c7c16bfdaa07a01b0ee23e9ef571a3/biobb_structure_checking-3.16.1.tar.gz to build tracker '/tmp/pip-build-tracker-t86xsp4c' 2026-06-16T17:09:06,613 Running setup.py (path:/tmp/pip-wheel-ktxrazzc/biobb-structure-checking_7ebe08a5ced349b0b7362c611bae7e21/setup.py) egg_info for package biobb-structure-checking 2026-06-16T17:09:06,614 Created temporary directory: /tmp/pip-pip-egg-info-o8pxch0o 2026-06-16T17:09:06,615 Preparing metadata (setup.py): started 2026-06-16T17:09:06,616 Running command python setup.py egg_info 2026-06-16T17:09:07,465 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-16T17:09:07,466 !! 2026-06-16T17:09:07,467 ******************************************************************************** 2026-06-16T17:09:07,467 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-16T17:09:07,468 License :: OSI Approved :: Apache Software License 2026-06-16T17:09:07,470 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T17:09:07,470 ******************************************************************************** 2026-06-16T17:09:07,471 !! 2026-06-16T17:09:07,472 self._finalize_license_expression() 2026-06-16T17:09:07,497 running egg_info 2026-06-16T17:09:07,525 creating /tmp/pip-pip-egg-info-o8pxch0o/biobb_structure_checking.egg-info 2026-06-16T17:09:07,526 writing /tmp/pip-pip-egg-info-o8pxch0o/biobb_structure_checking.egg-info/PKG-INFO 2026-06-16T17:09:07,530 writing dependency_links to /tmp/pip-pip-egg-info-o8pxch0o/biobb_structure_checking.egg-info/dependency_links.txt 2026-06-16T17:09:07,532 writing entry points to /tmp/pip-pip-egg-info-o8pxch0o/biobb_structure_checking.egg-info/entry_points.txt 2026-06-16T17:09:07,533 writing requirements to /tmp/pip-pip-egg-info-o8pxch0o/biobb_structure_checking.egg-info/requires.txt 2026-06-16T17:09:07,534 writing top-level names to /tmp/pip-pip-egg-info-o8pxch0o/biobb_structure_checking.egg-info/top_level.txt 2026-06-16T17:09:07,536 writing manifest file '/tmp/pip-pip-egg-info-o8pxch0o/biobb_structure_checking.egg-info/SOURCES.txt' 2026-06-16T17:09:07,629 reading manifest file '/tmp/pip-pip-egg-info-o8pxch0o/biobb_structure_checking.egg-info/SOURCES.txt' 2026-06-16T17:09:07,631 reading manifest template 'MANIFEST.in' 2026-06-16T17:09:07,645 adding license file 'LICENSE' 2026-06-16T17:09:07,650 writing manifest file '/tmp/pip-pip-egg-info-o8pxch0o/biobb_structure_checking.egg-info/SOURCES.txt' 2026-06-16T17:09:07,760 Preparing metadata (setup.py): finished with status 'done' 2026-06-16T17:09:07,764 Source in /tmp/pip-wheel-ktxrazzc/biobb-structure-checking_7ebe08a5ced349b0b7362c611bae7e21 has version 3.16.1, which satisfies requirement biobb-structure-checking==3.16.1 from https://files.pythonhosted.org/packages/b2/8c/e3743fc9913ce678190cb90d9e6a68c7c16bfdaa07a01b0ee23e9ef571a3/biobb_structure_checking-3.16.1.tar.gz 2026-06-16T17:09:07,765 Removed biobb-structure-checking==3.16.1 from https://files.pythonhosted.org/packages/b2/8c/e3743fc9913ce678190cb90d9e6a68c7c16bfdaa07a01b0ee23e9ef571a3/biobb_structure_checking-3.16.1.tar.gz from build tracker '/tmp/pip-build-tracker-t86xsp4c' 2026-06-16T17:09:07,771 Created temporary directory: /tmp/pip-unpack-l9mypnyy 2026-06-16T17:09:07,772 Building wheels for collected packages: biobb-structure-checking 2026-06-16T17:09:07,776 Created temporary directory: /tmp/pip-wheel-21xv74yq 2026-06-16T17:09:07,776 Building wheel for biobb-structure-checking (setup.py): started 2026-06-16T17:09:07,778 Destination directory: /tmp/pip-wheel-21xv74yq 2026-06-16T17:09:07,778 Running command python setup.py bdist_wheel 2026-06-16T17:09:08,619 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-16T17:09:08,620 !! 2026-06-16T17:09:08,621 ******************************************************************************** 2026-06-16T17:09:08,621 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-16T17:09:08,623 License :: OSI Approved :: Apache Software License 2026-06-16T17:09:08,624 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-16T17:09:08,625 ******************************************************************************** 2026-06-16T17:09:08,626 !! 2026-06-16T17:09:08,626 self._finalize_license_expression() 2026-06-16T17:09:08,627 running bdist_wheel 2026-06-16T17:09:08,756 running build 2026-06-16T17:09:08,757 running build_py 2026-06-16T17:09:08,788 creating build/lib/biobb_structure_checking 2026-06-16T17:09:08,790 copying biobb_structure_checking/mutation_manager.py -> build/lib/biobb_structure_checking 2026-06-16T17:09:08,792 copying biobb_structure_checking/structure_manager.py -> build/lib/biobb_structure_checking 2026-06-16T17:09:08,795 copying biobb_structure_checking/__init__.py -> build/lib/biobb_structure_checking 2026-06-16T17:09:08,797 copying biobb_structure_checking/modeller_manager.py -> build/lib/biobb_structure_checking 2026-06-16T17:09:08,800 copying biobb_structure_checking/check_structure.py -> build/lib/biobb_structure_checking 2026-06-16T17:09:08,801 copying biobb_structure_checking/constants.py -> build/lib/biobb_structure_checking 2026-06-16T17:09:08,804 copying biobb_structure_checking/structure_checking.py -> build/lib/biobb_structure_checking 2026-06-16T17:09:08,808 creating build/lib/biobb_structure_checking/modelling 2026-06-16T17:09:08,809 copying biobb_structure_checking/modelling/sequencedata.py -> build/lib/biobb_structure_checking/modelling 2026-06-16T17:09:08,812 copying biobb_structure_checking/modelling/__init__.py -> build/lib/biobb_structure_checking/modelling 2026-06-16T17:09:08,813 copying biobb_structure_checking/modelling/utils.py -> build/lib/biobb_structure_checking/modelling 2026-06-16T17:09:08,816 copying biobb_structure_checking/modelling/residue_set.py -> build/lib/biobb_structure_checking/modelling 2026-06-16T17:09:08,818 copying biobb_structure_checking/modelling/chainsdata.py -> build/lib/biobb_structure_checking/modelling 2026-06-16T17:09:08,820 copying biobb_structure_checking/modelling/structuredata.py -> build/lib/biobb_structure_checking/modelling 2026-06-16T17:09:08,822 copying biobb_structure_checking/modelling/modelsdata.py -> build/lib/biobb_structure_checking/modelling 2026-06-16T17:09:08,825 creating build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,826 copying biobb_structure_checking/commands/mutateside.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,828 copying biobb_structure_checking/commands/altloc.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,830 copying biobb_structure_checking/commands/cistransbck.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,831 copying biobb_structure_checking/commands/getss.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,833 copying biobb_structure_checking/commands/chiral.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,835 copying biobb_structure_checking/commands/add_hydrogen.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,837 copying biobb_structure_checking/commands/chiral_bck.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,839 copying biobb_structure_checking/commands/rem_hydrogen.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,841 copying biobb_structure_checking/commands/models.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,843 copying biobb_structure_checking/commands/inscodes.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,844 copying biobb_structure_checking/commands/ligands.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,847 copying biobb_structure_checking/commands/water.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,849 copying biobb_structure_checking/commands/__init__.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,850 copying biobb_structure_checking/commands/metals.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,852 copying biobb_structure_checking/commands/chains.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,855 copying biobb_structure_checking/commands/sequences.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,856 copying biobb_structure_checking/commands/amide.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,858 copying biobb_structure_checking/commands/backbone.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,861 copying biobb_structure_checking/commands/fixside.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,863 copying biobb_structure_checking/commands/clashes.py -> build/lib/biobb_structure_checking/commands 2026-06-16T17:09:08,865 creating build/lib/biobb_structure_checking/libs 2026-06-16T17:09:08,866 copying biobb_structure_checking/libs/__init__.py -> build/lib/biobb_structure_checking/libs 2026-06-16T17:09:08,868 copying biobb_structure_checking/libs/residue_lib_manager.py -> build/lib/biobb_structure_checking/libs 2026-06-16T17:09:08,870 copying biobb_structure_checking/libs/data_lib_manager.py -> build/lib/biobb_structure_checking/libs 2026-06-16T17:09:08,873 creating build/lib/biobb_structure_checking/pdbio 2026-06-16T17:09:08,874 copying biobb_structure_checking/pdbio/json_writer.py -> build/lib/biobb_structure_checking/pdbio 2026-06-16T17:09:08,875 copying biobb_structure_checking/pdbio/bare_builder.py -> build/lib/biobb_structure_checking/pdbio 2026-06-16T17:09:08,877 copying biobb_structure_checking/pdbio/__init__.py -> build/lib/biobb_structure_checking/pdbio 2026-06-16T17:09:08,879 copying biobb_structure_checking/pdbio/param_input.py -> build/lib/biobb_structure_checking/pdbio 2026-06-16T17:09:08,881 copying biobb_structure_checking/pdbio/PDBIO_extended.py -> build/lib/biobb_structure_checking/pdbio 2026-06-16T17:09:08,883 copying biobb_structure_checking/pdbio/mmb_server.py -> build/lib/biobb_structure_checking/pdbio 2026-06-16T17:09:08,885 running egg_info 2026-06-16T17:09:08,914 writing biobb_structure_checking.egg-info/PKG-INFO 2026-06-16T17:09:08,917 writing dependency_links to biobb_structure_checking.egg-info/dependency_links.txt 2026-06-16T17:09:08,919 writing entry points to biobb_structure_checking.egg-info/entry_points.txt 2026-06-16T17:09:08,920 writing requirements to biobb_structure_checking.egg-info/requires.txt 2026-06-16T17:09:08,921 writing top-level names to biobb_structure_checking.egg-info/top_level.txt 2026-06-16T17:09:08,956 reading manifest file 'biobb_structure_checking.egg-info/SOURCES.txt' 2026-06-16T17:09:08,961 reading manifest template 'MANIFEST.in' 2026-06-16T17:09:08,974 adding license file 'LICENSE' 2026-06-16T17:09:08,979 writing manifest file 'biobb_structure_checking.egg-info/SOURCES.txt' 2026-06-16T17:09:08,982 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'biobb_structure_checking.dat' is absent from the `packages` configuration. 2026-06-16T17:09:08,982 !! 2026-06-16T17:09:08,984 ******************************************************************************** 2026-06-16T17:09:08,984 ############################ 2026-06-16T17:09:08,985 # Package would be ignored # 2026-06-16T17:09:08,985 ############################ 2026-06-16T17:09:08,986 Python recognizes 'biobb_structure_checking.dat' as an importable package[^1], 2026-06-16T17:09:08,986 but it is absent from setuptools' `packages` configuration. 2026-06-16T17:09:08,987 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-16T17:09:08,988 package, please make sure that 'biobb_structure_checking.dat' is explicitly added 2026-06-16T17:09:08,989 to the `packages` configuration field. 2026-06-16T17:09:08,989 Alternatively, you can also rely on setuptools' discovery methods 2026-06-16T17:09:08,990 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-16T17:09:08,990 instead of `find_packages(...)`/`find:`). 2026-06-16T17:09:08,991 You can read more about "package discovery" on setuptools documentation page: 2026-06-16T17:09:08,992 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-16T17:09:08,993 If you don't want 'biobb_structure_checking.dat' to be distributed and are 2026-06-16T17:09:08,994 already explicitly excluding 'biobb_structure_checking.dat' via 2026-06-16T17:09:08,994 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-16T17:09:08,995 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-16T17:09:08,995 combination with a more fine grained `package-data` configuration. 2026-06-16T17:09:08,996 You can read more about "package data files" on setuptools documentation page: 2026-06-16T17:09:08,997 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-16T17:09:09,001 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-16T17:09:09,001 even if it does not contain any `.py` files. 2026-06-16T17:09:09,002 On the other hand, currently there is no concept of package data 2026-06-16T17:09:09,002 directory, all directories are treated like packages. 2026-06-16T17:09:09,003 ******************************************************************************** 2026-06-16T17:09:09,003 !! 2026-06-16T17:09:09,004 check.warn(importable) 2026-06-16T17:09:09,004 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'biobb_structure_checking.dat.modRes' is absent from the `packages` configuration. 2026-06-16T17:09:09,005 !! 2026-06-16T17:09:09,005 ******************************************************************************** 2026-06-16T17:09:09,006 ############################ 2026-06-16T17:09:09,006 # Package would be ignored # 2026-06-16T17:09:09,007 ############################ 2026-06-16T17:09:09,008 Python recognizes 'biobb_structure_checking.dat.modRes' as an importable package[^1], 2026-06-16T17:09:09,008 but it is absent from setuptools' `packages` configuration. 2026-06-16T17:09:09,009 This leads to an ambiguous overall configuration. If you want to distribute this 2026-06-16T17:09:09,010 package, please make sure that 'biobb_structure_checking.dat.modRes' is explicitly added 2026-06-16T17:09:09,011 to the `packages` configuration field. 2026-06-16T17:09:09,012 Alternatively, you can also rely on setuptools' discovery methods 2026-06-16T17:09:09,012 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-06-16T17:09:09,013 instead of `find_packages(...)`/`find:`). 2026-06-16T17:09:09,014 You can read more about "package discovery" on setuptools documentation page: 2026-06-16T17:09:09,015 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-06-16T17:09:09,016 If you don't want 'biobb_structure_checking.dat.modRes' to be distributed and are 2026-06-16T17:09:09,017 already explicitly excluding 'biobb_structure_checking.dat.modRes' via 2026-06-16T17:09:09,017 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-06-16T17:09:09,018 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-06-16T17:09:09,018 combination with a more fine grained `package-data` configuration. 2026-06-16T17:09:09,019 You can read more about "package data files" on setuptools documentation page: 2026-06-16T17:09:09,021 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-06-16T17:09:09,024 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-06-16T17:09:09,025 even if it does not contain any `.py` files. 2026-06-16T17:09:09,025 On the other hand, currently there is no concept of package data 2026-06-16T17:09:09,026 directory, all directories are treated like packages. 2026-06-16T17:09:09,026 ******************************************************************************** 2026-06-16T17:09:09,030 !! 2026-06-16T17:09:09,030 check.warn(importable) 2026-06-16T17:09:09,031 copying biobb_structure_checking/py.typed -> build/lib/biobb_structure_checking 2026-06-16T17:09:09,031 creating build/lib/biobb_structure_checking/dat 2026-06-16T17:09:09,032 copying biobb_structure_checking/dat/ADT_prm.json -> build/lib/biobb_structure_checking/dat 2026-06-16T17:09:09,033 copying biobb_structure_checking/dat/CMIP_prm.json -> build/lib/biobb_structure_checking/dat 2026-06-16T17:09:09,033 copying biobb_structure_checking/dat/all_residues.in -> build/lib/biobb_structure_checking/dat 2026-06-16T17:09:09,034 copying biobb_structure_checking/dat/commands.hlp -> build/lib/biobb_structure_checking/dat 2026-06-16T17:09:09,034 copying biobb_structure_checking/dat/data_lib.json -> build/lib/biobb_structure_checking/dat 2026-06-16T17:09:09,035 creating build/lib/biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,036 copying biobb_structure_checking/dat/modRes/modSER.json -> build/lib/biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,036 copying biobb_structure_checking/dat/modRes/modTHR.json -> build/lib/biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,037 copying biobb_structure_checking/dat/modRes/modTYR.json -> build/lib/biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,037 copying biobb_structure_checking/dat/modRes/modres.json -> build/lib/biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,037 copying biobb_structure_checking/dat/modRes/modres_phospho.json -> build/lib/biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,062 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-06-16T17:09:09,062 !! 2026-06-16T17:09:09,063 ******************************************************************************** 2026-06-16T17:09:09,064 Please avoid running ``setup.py`` directly. 2026-06-16T17:09:09,064 Instead, use pypa/build, pypa/installer or other 2026-06-16T17:09:09,065 standards-based tools. 2026-06-16T17:09:09,065 This deprecation is overdue, please update your project and remove deprecated 2026-06-16T17:09:09,066 calls to avoid build errors in the future. 2026-06-16T17:09:09,067 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-06-16T17:09:09,067 ******************************************************************************** 2026-06-16T17:09:09,069 !! 2026-06-16T17:09:09,069 self.initialize_options() 2026-06-16T17:09:09,089 installing to build/bdist.linux-armv7l/wheel 2026-06-16T17:09:09,090 running install 2026-06-16T17:09:09,112 running install_lib 2026-06-16T17:09:09,139 creating build/bdist.linux-armv7l/wheel 2026-06-16T17:09:09,141 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking 2026-06-16T17:09:09,142 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat 2026-06-16T17:09:09,144 copying build/lib/biobb_structure_checking/dat/all_residues.in -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat 2026-06-16T17:09:09,149 copying build/lib/biobb_structure_checking/dat/CMIP_prm.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat 2026-06-16T17:09:09,152 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,153 copying build/lib/biobb_structure_checking/dat/modRes/modTYR.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,155 copying build/lib/biobb_structure_checking/dat/modRes/modTHR.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,157 copying build/lib/biobb_structure_checking/dat/modRes/modres.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,163 copying build/lib/biobb_structure_checking/dat/modRes/modSER.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,165 copying build/lib/biobb_structure_checking/dat/modRes/modres_phospho.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes 2026-06-16T17:09:09,170 copying build/lib/biobb_structure_checking/dat/ADT_prm.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat 2026-06-16T17:09:09,173 copying build/lib/biobb_structure_checking/dat/commands.hlp -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat 2026-06-16T17:09:09,175 copying build/lib/biobb_structure_checking/dat/data_lib.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat 2026-06-16T17:09:09,180 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling 2026-06-16T17:09:09,181 copying build/lib/biobb_structure_checking/modelling/sequencedata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-06-16T17:09:09,184 copying build/lib/biobb_structure_checking/modelling/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-06-16T17:09:09,186 copying build/lib/biobb_structure_checking/modelling/utils.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-06-16T17:09:09,190 copying build/lib/biobb_structure_checking/modelling/residue_set.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-06-16T17:09:09,192 copying build/lib/biobb_structure_checking/modelling/chainsdata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-06-16T17:09:09,195 copying build/lib/biobb_structure_checking/modelling/structuredata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-06-16T17:09:09,198 copying build/lib/biobb_structure_checking/modelling/modelsdata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-06-16T17:09:09,200 copying build/lib/biobb_structure_checking/mutation_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-06-16T17:09:09,203 copying build/lib/biobb_structure_checking/structure_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-06-16T17:09:09,207 copying build/lib/biobb_structure_checking/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-06-16T17:09:09,210 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2026-06-16T17:09:09,212 copying build/lib/biobb_structure_checking/commands/mutateside.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,214 copying build/lib/biobb_structure_checking/commands/altloc.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,216 copying build/lib/biobb_structure_checking/commands/cistransbck.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,218 copying build/lib/biobb_structure_checking/commands/getss.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,220 copying build/lib/biobb_structure_checking/commands/chiral.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,222 copying build/lib/biobb_structure_checking/commands/add_hydrogen.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,225 copying build/lib/biobb_structure_checking/commands/chiral_bck.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,227 copying build/lib/biobb_structure_checking/commands/rem_hydrogen.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,229 copying build/lib/biobb_structure_checking/commands/models.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,231 copying build/lib/biobb_structure_checking/commands/inscodes.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,233 copying build/lib/biobb_structure_checking/commands/ligands.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,235 copying build/lib/biobb_structure_checking/commands/water.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,237 copying build/lib/biobb_structure_checking/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,239 copying build/lib/biobb_structure_checking/commands/metals.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,241 copying build/lib/biobb_structure_checking/commands/chains.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,244 copying build/lib/biobb_structure_checking/commands/sequences.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,246 copying build/lib/biobb_structure_checking/commands/amide.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,248 copying build/lib/biobb_structure_checking/commands/backbone.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,251 copying build/lib/biobb_structure_checking/commands/fixside.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,253 copying build/lib/biobb_structure_checking/commands/clashes.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-06-16T17:09:09,255 copying build/lib/biobb_structure_checking/modeller_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-06-16T17:09:09,258 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/libs 2026-06-16T17:09:09,259 copying build/lib/biobb_structure_checking/libs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/libs 2026-06-16T17:09:09,261 copying build/lib/biobb_structure_checking/libs/residue_lib_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/libs 2026-06-16T17:09:09,263 copying build/lib/biobb_structure_checking/libs/data_lib_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/libs 2026-06-16T17:09:09,266 copying build/lib/biobb_structure_checking/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-06-16T17:09:09,267 copying build/lib/biobb_structure_checking/check_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-06-16T17:09:09,270 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/pdbio 2026-06-16T17:09:09,271 copying build/lib/biobb_structure_checking/pdbio/json_writer.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-06-16T17:09:09,273 copying build/lib/biobb_structure_checking/pdbio/bare_builder.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-06-16T17:09:09,275 copying build/lib/biobb_structure_checking/pdbio/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-06-16T17:09:09,277 copying build/lib/biobb_structure_checking/pdbio/param_input.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-06-16T17:09:09,280 copying build/lib/biobb_structure_checking/pdbio/PDBIO_extended.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-06-16T17:09:09,282 copying build/lib/biobb_structure_checking/pdbio/mmb_server.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-06-16T17:09:09,284 copying build/lib/biobb_structure_checking/constants.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-06-16T17:09:09,287 copying build/lib/biobb_structure_checking/structure_checking.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-06-16T17:09:09,290 running install_egg_info 2026-06-16T17:09:09,323 Copying biobb_structure_checking.egg-info to build/bdist.linux-armv7l/wheel/./biobb_structure_checking-3.16.1-py3.11.egg-info 2026-06-16T17:09:09,335 running install_scripts 2026-06-16T17:09:09,348 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking-3.16.1.dist-info/WHEEL 2026-06-16T17:09:09,351 creating '/tmp/pip-wheel-21xv74yq/biobb_structure_checking-3.16.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-16T17:09:09,354 adding 'biobb_structure_checking/__init__.py' 2026-06-16T17:09:09,356 adding 'biobb_structure_checking/check_structure.py' 2026-06-16T17:09:09,359 adding 'biobb_structure_checking/constants.py' 2026-06-16T17:09:09,361 adding 'biobb_structure_checking/modeller_manager.py' 2026-06-16T17:09:09,363 adding 'biobb_structure_checking/mutation_manager.py' 2026-06-16T17:09:09,365 adding 'biobb_structure_checking/py.typed' 2026-06-16T17:09:09,369 adding 'biobb_structure_checking/structure_checking.py' 2026-06-16T17:09:09,377 adding 'biobb_structure_checking/structure_manager.py' 2026-06-16T17:09:09,380 adding 'biobb_structure_checking/commands/__init__.py' 2026-06-16T17:09:09,382 adding 'biobb_structure_checking/commands/add_hydrogen.py' 2026-06-16T17:09:09,383 adding 'biobb_structure_checking/commands/altloc.py' 2026-06-16T17:09:09,385 adding 'biobb_structure_checking/commands/amide.py' 2026-06-16T17:09:09,387 adding 'biobb_structure_checking/commands/backbone.py' 2026-06-16T17:09:09,389 adding 'biobb_structure_checking/commands/chains.py' 2026-06-16T17:09:09,391 adding 'biobb_structure_checking/commands/chiral.py' 2026-06-16T17:09:09,393 adding 'biobb_structure_checking/commands/chiral_bck.py' 2026-06-16T17:09:09,394 adding 'biobb_structure_checking/commands/cistransbck.py' 2026-06-16T17:09:09,396 adding 'biobb_structure_checking/commands/clashes.py' 2026-06-16T17:09:09,398 adding 'biobb_structure_checking/commands/fixside.py' 2026-06-16T17:09:09,401 adding 'biobb_structure_checking/commands/getss.py' 2026-06-16T17:09:09,403 adding 'biobb_structure_checking/commands/inscodes.py' 2026-06-16T17:09:09,405 adding 'biobb_structure_checking/commands/ligands.py' 2026-06-16T17:09:09,407 adding 'biobb_structure_checking/commands/metals.py' 2026-06-16T17:09:09,409 adding 'biobb_structure_checking/commands/models.py' 2026-06-16T17:09:09,411 adding 'biobb_structure_checking/commands/mutateside.py' 2026-06-16T17:09:09,413 adding 'biobb_structure_checking/commands/rem_hydrogen.py' 2026-06-16T17:09:09,415 adding 'biobb_structure_checking/commands/sequences.py' 2026-06-16T17:09:09,418 adding 'biobb_structure_checking/commands/water.py' 2026-06-16T17:09:09,420 adding 'biobb_structure_checking/dat/ADT_prm.json' 2026-06-16T17:09:09,422 adding 'biobb_structure_checking/dat/CMIP_prm.json' 2026-06-16T17:09:09,449 adding 'biobb_structure_checking/dat/all_residues.in' 2026-06-16T17:09:09,455 adding 'biobb_structure_checking/dat/commands.hlp' 2026-06-16T17:09:09,463 adding 'biobb_structure_checking/dat/data_lib.json' 2026-06-16T17:09:09,467 adding 'biobb_structure_checking/dat/modRes/modSER.json' 2026-06-16T17:09:09,469 adding 'biobb_structure_checking/dat/modRes/modTHR.json' 2026-06-16T17:09:09,472 adding 'biobb_structure_checking/dat/modRes/modTYR.json' 2026-06-16T17:09:09,490 adding 'biobb_structure_checking/dat/modRes/modres.json' 2026-06-16T17:09:09,506 adding 'biobb_structure_checking/dat/modRes/modres_phospho.json' 2026-06-16T17:09:09,510 adding 'biobb_structure_checking/libs/__init__.py' 2026-06-16T17:09:09,512 adding 'biobb_structure_checking/libs/data_lib_manager.py' 2026-06-16T17:09:09,513 adding 'biobb_structure_checking/libs/residue_lib_manager.py' 2026-06-16T17:09:09,515 adding 'biobb_structure_checking/modelling/__init__.py' 2026-06-16T17:09:09,518 adding 'biobb_structure_checking/modelling/chainsdata.py' 2026-06-16T17:09:09,519 adding 'biobb_structure_checking/modelling/modelsdata.py' 2026-06-16T17:09:09,521 adding 'biobb_structure_checking/modelling/residue_set.py' 2026-06-16T17:09:09,524 adding 'biobb_structure_checking/modelling/sequencedata.py' 2026-06-16T17:09:09,526 adding 'biobb_structure_checking/modelling/structuredata.py' 2026-06-16T17:09:09,532 adding 'biobb_structure_checking/modelling/utils.py' 2026-06-16T17:09:09,534 adding 'biobb_structure_checking/pdbio/PDBIO_extended.py' 2026-06-16T17:09:09,536 adding 'biobb_structure_checking/pdbio/__init__.py' 2026-06-16T17:09:09,537 adding 'biobb_structure_checking/pdbio/bare_builder.py' 2026-06-16T17:09:09,539 adding 'biobb_structure_checking/pdbio/json_writer.py' 2026-06-16T17:09:09,541 adding 'biobb_structure_checking/pdbio/mmb_server.py' 2026-06-16T17:09:09,543 adding 'biobb_structure_checking/pdbio/param_input.py' 2026-06-16T17:09:09,547 adding 'biobb_structure_checking-3.16.1.dist-info/licenses/LICENSE' 2026-06-16T17:09:09,549 adding 'biobb_structure_checking-3.16.1.dist-info/METADATA' 2026-06-16T17:09:09,550 adding 'biobb_structure_checking-3.16.1.dist-info/WHEEL' 2026-06-16T17:09:09,551 adding 'biobb_structure_checking-3.16.1.dist-info/entry_points.txt' 2026-06-16T17:09:09,553 adding 'biobb_structure_checking-3.16.1.dist-info/top_level.txt' 2026-06-16T17:09:09,554 adding 'biobb_structure_checking-3.16.1.dist-info/RECORD' 2026-06-16T17:09:09,559 removing build/bdist.linux-armv7l/wheel 2026-06-16T17:09:09,690 Building wheel for biobb-structure-checking (setup.py): finished with status 'done' 2026-06-16T17:09:09,694 Created wheel for biobb-structure-checking: filename=biobb_structure_checking-3.16.1-py3-none-any.whl size=198805 sha256=d2a8ab8cd28ed4cd3c84f79e6724d83147a39926218ed3cea208eb52a46ace1e 2026-06-16T17:09:09,696 Stored in directory: /tmp/pip-ephem-wheel-cache-oqz9finq/wheels/79/54/2e/8efbe9962b2c1abd17be449b2fac4ad493dd7e0af65f370785 2026-06-16T17:09:09,708 Successfully built biobb-structure-checking 2026-06-16T17:09:09,716 Removed build tracker: '/tmp/pip-build-tracker-t86xsp4c'