2026-06-17T09:20:05,359 Created temporary directory: /tmp/pip-ephem-wheel-cache-zp1gy9gh 2026-06-17T09:20:05,361 Created temporary directory: /tmp/pip-build-tracker-aciexnv_ 2026-06-17T09:20:05,362 Initialized build tracking at /tmp/pip-build-tracker-aciexnv_ 2026-06-17T09:20:05,362 Created build tracker: /tmp/pip-build-tracker-aciexnv_ 2026-06-17T09:20:05,363 Entered build tracker: /tmp/pip-build-tracker-aciexnv_ 2026-06-17T09:20:05,363 Created temporary directory: /tmp/pip-wheel-a1xbxpjz 2026-06-17T09:20:05,366 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://files.pythonhosted.org/packages/5a/98/bc2c3419e968ea035f58a55609c81c7c87fa1b8fca061eb2c23cac70d897/scipion_em_motioncorr-3.16.6-py3-none-any.whl (from https://pypi.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,692 Found link https://files.pythonhosted.org/packages/47/86/5b0b2ae808d030df48e16ed0e7400e6dc76c5d96143f4df4419f4ccbd106/scipion-em-motioncorr-3.16.7.tar.gz (from https://pypi.org/simple/scipion-em-motioncorr/), version: 3.16.7 2026-06-17T09:20:05,693 Skipping link: No binaries permitted for scipion-em-motioncorr: https://files.pythonhosted.org/packages/bd/e0/fd2ab7ab1bc818fddc2279d9fd966aee2d355adf75a4e9f1b473814205d7/scipion_em_motioncorr-3.16.7-py3-none-any.whl (from https://pypi.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,693 Skipping link: No binaries permitted for scipion-em-motioncorr: https://files.pythonhosted.org/packages/3e/4d/4c1f5063a49d3136e1b1cdffb8be7b15cffc5552d62816741840934ef8a3/scipion_em_motioncorr-3.17.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-motioncorr/) (requires-python:>=3.8) 2026-06-17T09:20:05,694 Found link https://files.pythonhosted.org/packages/7a/c4/2718da62b2f9bde195d24bd67ed8863ed21730f28029d2676de9bfd1592b/scipion_em_motioncorr-3.17.0.tar.gz (from https://pypi.org/simple/scipion-em-motioncorr/) (requires-python:>=3.8), version: 3.17.0 2026-06-17T09:20:05,695 Skipping link: No binaries permitted for scipion-em-motioncorr: https://files.pythonhosted.org/packages/c8/2c/6f3cde64ec16376902fe771d89bc3eab8a2a8160a9ee570938af63b8c73f/scipion_em_motioncorr-3.17.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-motioncorr/) (requires-python:>=3.8) 2026-06-17T09:20:05,696 Found link https://files.pythonhosted.org/packages/09/e2/67240a93c1a33097bcf020d9c758d48d18a25edb7146368018c1f9cd5288/scipion_em_motioncorr-3.17.1.tar.gz (from https://pypi.org/simple/scipion-em-motioncorr/) (requires-python:>=3.8), version: 3.17.1 2026-06-17T09:20:05,696 Skipping link: No binaries permitted for scipion-em-motioncorr: https://files.pythonhosted.org/packages/5e/16/4cf9e617ce66bd949fbdc9eb6e096c74d3a68315e48bf56f8f6efd681fbe/scipion_em_motioncorr-4.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-motioncorr/) (requires-python:>=3.8) 2026-06-17T09:20:05,697 Found link https://files.pythonhosted.org/packages/24/e4/7fa64e44cff7e5e8c27989ed12d6b5891468e3d703ae5115140e8da41a88/scipion_em_motioncorr-4.0.0.tar.gz (from https://pypi.org/simple/scipion-em-motioncorr/) (requires-python:>=3.8), version: 4.0.0 2026-06-17T09:20:05,698 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-motioncorr/ 2026-06-17T09:20:05,699 Getting page https://www.piwheels.org/simple/scipion-em-motioncorr/ 2026-06-17T09:20:05,700 Found index url https://www.piwheels.org/simple 2026-06-17T09:20:05,889 Fetched page https://www.piwheels.org/simple/scipion-em-motioncorr/ as text/html 2026-06-17T09:20:05,895 Skipping link: No binaries permitted for 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link: No binaries permitted for scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-3.0.12-py3-none-any.whl#sha256=db1acecc57ea6c8b207688c7366ce49b257999dbe0eb23ca537632d020a51a70 (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,897 Skipping link: No binaries permitted for scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-3.0.11-py3-none-any.whl#sha256=b227784b179974499fe20a6e6115d83bd7a754a6768c9a2d04b927c1afee45be (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,898 Skipping link: No binaries permitted for scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-3.0.10-py3-none-any.whl#sha256=cb515f09afc849901def4730ef792dba1cf16aaaef8f5851d4f45d954f867092 (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,898 Skipping link: No binaries 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scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-1.0.7-py3-none-any.whl#sha256=da2d059862858abcf16d9a991ee6bf96ef32ae34424df2a91f90f46467f28ebd (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,900 Skipping link: No binaries permitted for scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-1.0.6-py3-none-any.whl#sha256=c1f173d1bd6d8d8e30107d6db5f6cecc6b2f91402fa31cece8f0a0848ae4d204 (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,901 Skipping link: No binaries permitted for scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-1.0.5-py3-none-any.whl#sha256=cf729c1dcb27760a266b95f884a7d933fd303bd1bc0818f958b4f1ba0d14ff0a (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,902 Skipping link: No binaries permitted for scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-1.0.4-py3-none-any.whl#sha256=ddbad136e0f61f6b3d3b20d5162f706a6f3c431128c68ff8dc3949655506c999 (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,902 Skipping link: No binaries permitted for scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-1.0.3b0-py3-none-any.whl#sha256=f5503022cdced6c01038c5e4a2e6589839a765c25df45421fbe4eaf7435def52 (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,903 Skipping link: No binaries permitted for scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-1.0.2-py3-none-any.whl#sha256=2b25bc33f5a917e33786a67df04aa13bae756b388f58ec1bb5f8c58cb96141bd (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,903 Skipping link: No binaries permitted for scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-1.0.1-py3-none-any.whl#sha256=49c03b26d5bdef1d102423a0c40e22857ada9271e6614ff640632aee6ff74df5 (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,904 Skipping link: No binaries permitted for scipion-em-motioncorr: https://archive1.piwheels.org/simple/scipion-em-motioncorr/scipion_em_motioncorr-1.0.0-py3-none-any.whl#sha256=a5e1ebad8bda5cc403c8748b02cc7df4d7d3055273bfc1b0f89d836547b0d8b9 (from https://www.piwheels.org/simple/scipion-em-motioncorr/) 2026-06-17T09:20:05,904 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-motioncorr/ 2026-06-17T09:20:05,905 Skipping link: not a file: https://pypi.org/simple/scipion-em-motioncorr/ 2026-06-17T09:20:05,928 Given no hashes to check 1 links for project 'scipion-em-motioncorr': discarding no candidates 2026-06-17T09:20:05,946 Collecting scipion-em-motioncorr==4.0.0 2026-06-17T09:20:05,949 Created temporary directory: /tmp/pip-unpack-fa72sbvw 2026-06-17T09:20:06,186 Downloading scipion_em_motioncorr-4.0.0.tar.gz (47 kB) 2026-06-17T09:20:06,293 Added scipion-em-motioncorr==4.0.0 from https://files.pythonhosted.org/packages/24/e4/7fa64e44cff7e5e8c27989ed12d6b5891468e3d703ae5115140e8da41a88/scipion_em_motioncorr-4.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-aciexnv_' 2026-06-17T09:20:06,298 Created temporary directory: /tmp/pip-build-env-zkh1fhi2 2026-06-17T09:20:06,302 Installing build dependencies: started 2026-06-17T09:20:06,303 Running command pip subprocess to install build dependencies 2026-06-17T09:20:07,475 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-17T09:20:07,883 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-17T09:20:07,907 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-17T09:20:09,727 Collecting setuptools 2026-06-17T09:20:09,728 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-17T09:20:09,743 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-17T09:20:09,975 Collecting wheel 2026-06-17T09:20:09,977 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-06-17T09:20:09,991 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-06-17T09:20:10,175 Collecting packaging>=24.0 2026-06-17T09:20:10,176 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-06-17T09:20:10,194 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-06-17T09:20:10,387 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-17T09:20:10,405 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-17T09:20:10,501 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-17T09:20:10,536 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-17T09:20:10,563 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-17T09:20:10,643 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-17T09:20:13,386 Installing collected packages: setuptools, packaging, wheel 2026-06-17T09:20:16,845 Creating /tmp/pip-build-env-zkh1fhi2/overlay/local/bin 2026-06-17T09:20:16,847 changing mode of /tmp/pip-build-env-zkh1fhi2/overlay/local/bin/wheel to 755 2026-06-17T09:20:16,869 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-06-17T09:20:17,155 Installing build dependencies: finished with status 'done' 2026-06-17T09:20:17,162 Getting requirements to build wheel: started 2026-06-17T09:20:17,163 Running command Getting requirements to build wheel 2026-06-17T09:20:17,796 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-06-17T09:20:17,797 `flat-layout` detected -- analysing . 2026-06-17T09:20:17,813 discovered packages -- ['motioncorr', 'motioncorr.tests', 'motioncorr.protocols'] 2026-06-17T09:20:17,820 /tmp/pip-build-env-zkh1fhi2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-17T09:20:17,820 !! 2026-06-17T09:20:17,822 ******************************************************************************** 2026-06-17T09:20:17,822 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-17T09:20:17,823 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-17T09:20:17,824 or your builds will no longer be supported. 2026-06-17T09:20:17,825 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-17T09:20:17,826 ******************************************************************************** 2026-06-17T09:20:17,827 !! 2026-06-17T09:20:17,827 corresp(dist, value, root_dir) 2026-06-17T09:20:18,119 /tmp/pip-build-env-zkh1fhi2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-17T09:20:18,119 !! 2026-06-17T09:20:18,120 ******************************************************************************** 2026-06-17T09:20:18,121 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-17T09:20:18,122 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-17T09:20:18,123 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-17T09:20:18,124 ******************************************************************************** 2026-06-17T09:20:18,125 !! 2026-06-17T09:20:18,125 dist._finalize_license_expression() 2026-06-17T09:20:18,126 /tmp/pip-build-env-zkh1fhi2/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-17T09:20:18,127 !! 2026-06-17T09:20:18,128 ******************************************************************************** 2026-06-17T09:20:18,128 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-17T09:20:18,129 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-17T09:20:18,130 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-17T09:20:18,130 ******************************************************************************** 2026-06-17T09:20:18,131 !! 2026-06-17T09:20:18,131 self._finalize_license_expression() 2026-06-17T09:20:18,136 running egg_info 2026-06-17T09:20:18,143 writing scipion_em_motioncorr.egg-info/PKG-INFO 2026-06-17T09:20:18,147 writing dependency_links to scipion_em_motioncorr.egg-info/dependency_links.txt 2026-06-17T09:20:18,149 writing entry points to scipion_em_motioncorr.egg-info/entry_points.txt 2026-06-17T09:20:18,151 writing requirements to scipion_em_motioncorr.egg-info/requires.txt 2026-06-17T09:20:18,152 writing top-level names to scipion_em_motioncorr.egg-info/top_level.txt 2026-06-17T09:20:18,173 reading manifest file 'scipion_em_motioncorr.egg-info/SOURCES.txt' 2026-06-17T09:20:18,177 reading manifest template 'MANIFEST.in' 2026-06-17T09:20:18,179 adding license file 'LICENSE' 2026-06-17T09:20:18,183 writing manifest file 'scipion_em_motioncorr.egg-info/SOURCES.txt' 2026-06-17T09:20:18,281 Getting requirements to build wheel: finished with status 'done' 2026-06-17T09:20:18,285 Created temporary directory: /tmp/pip-modern-metadata-2kyexof8 2026-06-17T09:20:18,288 Preparing metadata (pyproject.toml): started 2026-06-17T09:20:18,289 Running command Preparing metadata (pyproject.toml) 2026-06-17T09:20:18,882 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-06-17T09:20:18,882 `flat-layout` detected -- analysing . 2026-06-17T09:20:18,898 discovered packages -- ['motioncorr', 'motioncorr.tests', 'motioncorr.protocols'] 2026-06-17T09:20:18,904 /tmp/pip-build-env-zkh1fhi2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-17T09:20:18,904 !! 2026-06-17T09:20:18,905 ******************************************************************************** 2026-06-17T09:20:18,906 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-17T09:20:18,907 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-17T09:20:18,908 or your builds will no longer be supported. 2026-06-17T09:20:18,909 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-17T09:20:18,909 ******************************************************************************** 2026-06-17T09:20:18,910 !! 2026-06-17T09:20:18,911 corresp(dist, value, root_dir) 2026-06-17T09:20:18,980 /tmp/pip-build-env-zkh1fhi2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-17T09:20:18,980 !! 2026-06-17T09:20:18,982 ******************************************************************************** 2026-06-17T09:20:18,982 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-17T09:20:18,983 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-17T09:20:18,984 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-17T09:20:18,985 ******************************************************************************** 2026-06-17T09:20:18,986 !! 2026-06-17T09:20:18,986 dist._finalize_license_expression() 2026-06-17T09:20:18,987 /tmp/pip-build-env-zkh1fhi2/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-17T09:20:18,987 !! 2026-06-17T09:20:18,988 ******************************************************************************** 2026-06-17T09:20:18,988 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-17T09:20:18,989 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-17T09:20:18,990 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-17T09:20:18,991 ******************************************************************************** 2026-06-17T09:20:18,991 !! 2026-06-17T09:20:18,992 self._finalize_license_expression() 2026-06-17T09:20:18,992 running dist_info 2026-06-17T09:20:19,002 creating /tmp/pip-modern-metadata-2kyexof8/scipion_em_motioncorr.egg-info 2026-06-17T09:20:19,003 writing /tmp/pip-modern-metadata-2kyexof8/scipion_em_motioncorr.egg-info/PKG-INFO 2026-06-17T09:20:19,007 writing dependency_links to /tmp/pip-modern-metadata-2kyexof8/scipion_em_motioncorr.egg-info/dependency_links.txt 2026-06-17T09:20:19,008 writing entry points to /tmp/pip-modern-metadata-2kyexof8/scipion_em_motioncorr.egg-info/entry_points.txt 2026-06-17T09:20:19,010 writing requirements to /tmp/pip-modern-metadata-2kyexof8/scipion_em_motioncorr.egg-info/requires.txt 2026-06-17T09:20:19,011 writing top-level names to /tmp/pip-modern-metadata-2kyexof8/scipion_em_motioncorr.egg-info/top_level.txt 2026-06-17T09:20:19,012 writing manifest file '/tmp/pip-modern-metadata-2kyexof8/scipion_em_motioncorr.egg-info/SOURCES.txt' 2026-06-17T09:20:19,031 reading manifest file '/tmp/pip-modern-metadata-2kyexof8/scipion_em_motioncorr.egg-info/SOURCES.txt' 2026-06-17T09:20:19,033 reading manifest template 'MANIFEST.in' 2026-06-17T09:20:19,035 adding license file 'LICENSE' 2026-06-17T09:20:19,038 writing manifest file '/tmp/pip-modern-metadata-2kyexof8/scipion_em_motioncorr.egg-info/SOURCES.txt' 2026-06-17T09:20:19,039 creating '/tmp/pip-modern-metadata-2kyexof8/scipion_em_motioncorr-4.0.0.dist-info' 2026-06-17T09:20:19,165 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-17T09:20:19,169 Source in /tmp/pip-wheel-a1xbxpjz/scipion-em-motioncorr_a8933ee874f74f8f9e976578edab07ea has version 4.0.0, which satisfies requirement scipion-em-motioncorr==4.0.0 from https://files.pythonhosted.org/packages/24/e4/7fa64e44cff7e5e8c27989ed12d6b5891468e3d703ae5115140e8da41a88/scipion_em_motioncorr-4.0.0.tar.gz 2026-06-17T09:20:19,170 Removed scipion-em-motioncorr==4.0.0 from https://files.pythonhosted.org/packages/24/e4/7fa64e44cff7e5e8c27989ed12d6b5891468e3d703ae5115140e8da41a88/scipion_em_motioncorr-4.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-aciexnv_' 2026-06-17T09:20:19,176 Created temporary directory: /tmp/pip-unpack-wdccl6ji 2026-06-17T09:20:19,177 Building wheels for collected packages: scipion-em-motioncorr 2026-06-17T09:20:19,181 Created temporary directory: /tmp/pip-wheel-a1jr9ful 2026-06-17T09:20:19,181 Destination directory: /tmp/pip-wheel-a1jr9ful 2026-06-17T09:20:19,183 Building wheel for scipion-em-motioncorr (pyproject.toml): started 2026-06-17T09:20:19,185 Running command Building wheel for scipion-em-motioncorr (pyproject.toml) 2026-06-17T09:20:19,727 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-06-17T09:20:19,727 `flat-layout` detected -- analysing . 2026-06-17T09:20:19,743 discovered packages -- ['motioncorr', 'motioncorr.tests', 'motioncorr.protocols'] 2026-06-17T09:20:19,749 /tmp/pip-build-env-zkh1fhi2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-17T09:20:19,750 !! 2026-06-17T09:20:19,751 ******************************************************************************** 2026-06-17T09:20:19,751 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-17T09:20:19,752 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-17T09:20:19,753 or your builds will no longer be supported. 2026-06-17T09:20:19,754 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-17T09:20:19,754 ******************************************************************************** 2026-06-17T09:20:19,755 !! 2026-06-17T09:20:19,755 corresp(dist, value, root_dir) 2026-06-17T09:20:19,822 /tmp/pip-build-env-zkh1fhi2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-17T09:20:19,823 !! 2026-06-17T09:20:19,823 ******************************************************************************** 2026-06-17T09:20:19,824 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-17T09:20:19,825 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-17T09:20:19,826 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-17T09:20:19,827 ******************************************************************************** 2026-06-17T09:20:19,828 !! 2026-06-17T09:20:19,828 dist._finalize_license_expression() 2026-06-17T09:20:19,829 /tmp/pip-build-env-zkh1fhi2/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-17T09:20:19,830 !! 2026-06-17T09:20:19,831 ******************************************************************************** 2026-06-17T09:20:19,832 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-17T09:20:19,833 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-17T09:20:19,834 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-17T09:20:19,835 ******************************************************************************** 2026-06-17T09:20:19,836 !! 2026-06-17T09:20:19,836 self._finalize_license_expression() 2026-06-17T09:20:19,837 running bdist_wheel 2026-06-17T09:20:19,850 running build 2026-06-17T09:20:19,851 running build_py 2026-06-17T09:20:19,856 creating build/lib/motioncorr 2026-06-17T09:20:19,859 copying motioncorr/bibtex.py -> build/lib/motioncorr 2026-06-17T09:20:19,861 copying motioncorr/constants.py -> build/lib/motioncorr 2026-06-17T09:20:19,863 copying motioncorr/__init__.py -> build/lib/motioncorr 2026-06-17T09:20:19,866 copying motioncorr/viewers.py -> build/lib/motioncorr 2026-06-17T09:20:19,869 copying motioncorr/convert.py -> build/lib/motioncorr 2026-06-17T09:20:19,872 creating build/lib/motioncorr/tests 2026-06-17T09:20:19,873 copying motioncorr/tests/__init__.py -> build/lib/motioncorr/tests 2026-06-17T09:20:19,875 copying motioncorr/tests/test_protocols_motioncor.py -> build/lib/motioncorr/tests 2026-06-17T09:20:19,877 copying motioncorr/tests/test_protocols_motioncor_ns.py -> build/lib/motioncorr/tests 2026-06-17T09:20:19,880 copying motioncorr/tests/test_protocols_tomo.py -> build/lib/motioncorr/tests 2026-06-17T09:20:19,882 creating build/lib/motioncorr/protocols 2026-06-17T09:20:19,884 copying motioncorr/protocols/protocol_motioncorr_ns.py -> build/lib/motioncorr/protocols 2026-06-17T09:20:19,886 copying motioncorr/protocols/protocol_ts_motioncor.py -> build/lib/motioncorr/protocols 2026-06-17T09:20:19,889 copying motioncorr/protocols/__init__.py -> build/lib/motioncorr/protocols 2026-06-17T09:20:19,890 copying motioncorr/protocols/protocol_base.py -> build/lib/motioncorr/protocols 2026-06-17T09:20:19,893 copying motioncorr/protocols/protocol_motioncorr.py -> build/lib/motioncorr/protocols 2026-06-17T09:20:19,895 copying motioncorr/protocols/protocol_motioncorr_tasks.py -> build/lib/motioncorr/protocols 2026-06-17T09:20:19,898 running egg_info 2026-06-17T09:20:19,908 writing scipion_em_motioncorr.egg-info/PKG-INFO 2026-06-17T09:20:19,911 writing dependency_links to scipion_em_motioncorr.egg-info/dependency_links.txt 2026-06-17T09:20:19,912 writing entry points to scipion_em_motioncorr.egg-info/entry_points.txt 2026-06-17T09:20:19,913 writing requirements to scipion_em_motioncorr.egg-info/requires.txt 2026-06-17T09:20:19,914 writing top-level names to scipion_em_motioncorr.egg-info/top_level.txt 2026-06-17T09:20:19,925 reading manifest file 'scipion_em_motioncorr.egg-info/SOURCES.txt' 2026-06-17T09:20:19,928 reading manifest template 'MANIFEST.in' 2026-06-17T09:20:19,931 adding license file 'LICENSE' 2026-06-17T09:20:19,934 writing manifest file 'scipion_em_motioncorr.egg-info/SOURCES.txt' 2026-06-17T09:20:19,938 copying motioncorr/protocols.conf -> build/lib/motioncorr 2026-06-17T09:20:19,950 installing to build/bdist.linux-armv7l/wheel 2026-06-17T09:20:19,950 running install 2026-06-17T09:20:19,973 running install_lib 2026-06-17T09:20:19,979 creating build/bdist.linux-armv7l/wheel 2026-06-17T09:20:19,981 creating build/bdist.linux-armv7l/wheel/motioncorr 2026-06-17T09:20:19,982 copying build/lib/motioncorr/bibtex.py -> build/bdist.linux-armv7l/wheel/./motioncorr 2026-06-17T09:20:19,984 copying build/lib/motioncorr/constants.py -> build/bdist.linux-armv7l/wheel/./motioncorr 2026-06-17T09:20:19,987 creating build/bdist.linux-armv7l/wheel/motioncorr/tests 2026-06-17T09:20:19,988 copying build/lib/motioncorr/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./motioncorr/tests 2026-06-17T09:20:19,990 copying build/lib/motioncorr/tests/test_protocols_motioncor.py -> build/bdist.linux-armv7l/wheel/./motioncorr/tests 2026-06-17T09:20:19,992 copying build/lib/motioncorr/tests/test_protocols_motioncor_ns.py -> build/bdist.linux-armv7l/wheel/./motioncorr/tests 2026-06-17T09:20:19,995 copying build/lib/motioncorr/tests/test_protocols_tomo.py -> build/bdist.linux-armv7l/wheel/./motioncorr/tests 2026-06-17T09:20:19,997 creating build/bdist.linux-armv7l/wheel/motioncorr/protocols 2026-06-17T09:20:19,998 copying build/lib/motioncorr/protocols/protocol_motioncorr_ns.py -> build/bdist.linux-armv7l/wheel/./motioncorr/protocols 2026-06-17T09:20:20,001 copying build/lib/motioncorr/protocols/protocol_ts_motioncor.py -> build/bdist.linux-armv7l/wheel/./motioncorr/protocols 2026-06-17T09:20:20,004 copying build/lib/motioncorr/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./motioncorr/protocols 2026-06-17T09:20:20,006 copying build/lib/motioncorr/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/./motioncorr/protocols 2026-06-17T09:20:20,009 copying build/lib/motioncorr/protocols/protocol_motioncorr.py -> build/bdist.linux-armv7l/wheel/./motioncorr/protocols 2026-06-17T09:20:20,011 copying build/lib/motioncorr/protocols/protocol_motioncorr_tasks.py -> build/bdist.linux-armv7l/wheel/./motioncorr/protocols 2026-06-17T09:20:20,014 copying build/lib/motioncorr/__init__.py -> build/bdist.linux-armv7l/wheel/./motioncorr 2026-06-17T09:20:20,016 copying build/lib/motioncorr/viewers.py -> build/bdist.linux-armv7l/wheel/./motioncorr 2026-06-17T09:20:20,018 copying build/lib/motioncorr/protocols.conf -> build/bdist.linux-armv7l/wheel/./motioncorr 2026-06-17T09:20:20,020 copying build/lib/motioncorr/convert.py -> build/bdist.linux-armv7l/wheel/./motioncorr 2026-06-17T09:20:20,022 running install_egg_info 2026-06-17T09:20:20,027 Copying scipion_em_motioncorr.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_motioncorr-4.0.0-py3.11.egg-info 2026-06-17T09:20:20,039 running install_scripts 2026-06-17T09:20:20,053 creating build/bdist.linux-armv7l/wheel/scipion_em_motioncorr-4.0.0.dist-info/WHEEL 2026-06-17T09:20:20,055 creating '/tmp/pip-wheel-a1jr9ful/.tmp-pewz2ss2/scipion_em_motioncorr-4.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-17T09:20:20,058 adding 'motioncorr/__init__.py' 2026-06-17T09:20:20,059 adding 'motioncorr/bibtex.py' 2026-06-17T09:20:20,061 adding 'motioncorr/constants.py' 2026-06-17T09:20:20,062 adding 'motioncorr/convert.py' 2026-06-17T09:20:20,064 adding 'motioncorr/protocols.conf' 2026-06-17T09:20:20,065 adding 'motioncorr/viewers.py' 2026-06-17T09:20:20,067 adding 'motioncorr/protocols/__init__.py' 2026-06-17T09:20:20,070 adding 'motioncorr/protocols/protocol_base.py' 2026-06-17T09:20:20,073 adding 'motioncorr/protocols/protocol_motioncorr.py' 2026-06-17T09:20:20,076 adding 'motioncorr/protocols/protocol_motioncorr_ns.py' 2026-06-17T09:20:20,079 adding 'motioncorr/protocols/protocol_motioncorr_tasks.py' 2026-06-17T09:20:20,081 adding 'motioncorr/protocols/protocol_ts_motioncor.py' 2026-06-17T09:20:20,083 adding 'motioncorr/tests/__init__.py' 2026-06-17T09:20:20,084 adding 'motioncorr/tests/test_protocols_motioncor.py' 2026-06-17T09:20:20,086 adding 'motioncorr/tests/test_protocols_motioncor_ns.py' 2026-06-17T09:20:20,087 adding 'motioncorr/tests/test_protocols_tomo.py' 2026-06-17T09:20:20,095 adding 'scipion_em_motioncorr-4.0.0.dist-info/licenses/LICENSE' 2026-06-17T09:20:20,097 adding 'scipion_em_motioncorr-4.0.0.dist-info/METADATA' 2026-06-17T09:20:20,098 adding 'scipion_em_motioncorr-4.0.0.dist-info/WHEEL' 2026-06-17T09:20:20,099 adding 'scipion_em_motioncorr-4.0.0.dist-info/entry_points.txt' 2026-06-17T09:20:20,100 adding 'scipion_em_motioncorr-4.0.0.dist-info/top_level.txt' 2026-06-17T09:20:20,101 adding 'scipion_em_motioncorr-4.0.0.dist-info/RECORD' 2026-06-17T09:20:20,102 removing build/bdist.linux-armv7l/wheel 2026-06-17T09:20:20,208 Building wheel for scipion-em-motioncorr (pyproject.toml): finished with status 'done' 2026-06-17T09:20:20,214 Created wheel for scipion-em-motioncorr: filename=scipion_em_motioncorr-4.0.0-py3-none-any.whl size=61740 sha256=829f11a1edd6c34ac459cf29fd9983d22f802e7d475001958cd6899424c04de9 2026-06-17T09:20:20,215 Stored in directory: /tmp/pip-ephem-wheel-cache-v_rhw4tr/wheels/8a/00/ac/089a40b4dca822ec04ef51b1cd0f2db233ba5d875831e7a923 2026-06-17T09:20:20,227 Successfully built scipion-em-motioncorr 2026-06-17T09:20:20,232 Removed build tracker: '/tmp/pip-build-tracker-aciexnv_'