2026-06-18T05:35:53,329 Created temporary directory: /tmp/pip-ephem-wheel-cache-7qrbbufh 2026-06-18T05:35:53,331 Created temporary directory: /tmp/pip-build-tracker-a_8xtad4 2026-06-18T05:35:53,332 Initialized build tracking at /tmp/pip-build-tracker-a_8xtad4 2026-06-18T05:35:53,332 Created build tracker: /tmp/pip-build-tracker-a_8xtad4 2026-06-18T05:35:53,332 Entered build tracker: /tmp/pip-build-tracker-a_8xtad4 2026-06-18T05:35:53,333 Created temporary directory: /tmp/pip-wheel-80ylamju 2026-06-18T05:35:53,336 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/cdot/cdot-0.2.9-py3-none-any.whl#sha256=2b7c37b39921566f9f0cc22fe10e12cc6e529703cbd0a51648469f6fa2e449ca (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-18T05:35:53,757 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.8-py3-none-any.whl#sha256=c51875714720e10c4c222685998f1e5f4c5f08816336c04106d05aa3ae25797b (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-18T05:35:53,758 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.7-py3-none-any.whl#sha256=d55ea14ec1964ae063a9cc5d3a2cf35eb6dbf37a135b599a944e59c17a2c36d0 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-18T05:35:53,758 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.6-py3-none-any.whl#sha256=9eb6099f071f2cbce859de907a7dc64e99979fc5a6986eb0393d3574e3b5d9d9 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-18T05:35:53,759 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.5-py3-none-any.whl#sha256=95b3f46e2bf11e295861813fcc0137b3fe58a92791c2e4631af124532d5323e2 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-18T05:35:53,759 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.3-py3-none-any.whl#sha256=a1d14da59850b5df181f40a7d2ffd41f81ebf07ac8395edb83d7aa4648a579ef (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-18T05:35:53,760 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.2-py3-none-any.whl#sha256=4f5f50ad4c6f9319a98026732ded7e99b336a4c1da5a7e70684f10cc852ef036 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-18T05:35:53,760 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.2.1-py3-none-any.whl#sha256=59571b8928689dc694a90ccd4d44d827dfe00eb09010328766cac3986f55b315 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-18T05:35:53,761 Skipping link: No binaries permitted for cdot: https://archive1.piwheels.org/simple/cdot/cdot-0.1.1-py3-none-any.whl#sha256=5d90d2b2abd202ce3a63e85c9dd7bb20658f273945be1c0af354e50a1971dc17 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2026-06-18T05:35:53,762 Skipping link: not a file: https://www.piwheels.org/simple/cdot/ 2026-06-18T05:35:53,762 Skipping link: not a file: https://pypi.org/simple/cdot/ 2026-06-18T05:35:53,783 Given no hashes to check 1 links for project 'cdot': discarding no candidates 2026-06-18T05:35:53,801 Collecting cdot==0.2.28 2026-06-18T05:35:53,803 Created temporary directory: /tmp/pip-unpack-uazm0lbp 2026-06-18T05:35:54,027 Downloading cdot-0.2.28.tar.gz (81 kB) 2026-06-18T05:35:54,187 Added cdot==0.2.28 from https://files.pythonhosted.org/packages/64/a1/6b2e5bb1f142002e500c6d365a39f4a0102f9e9173c0576eee6137243bbb/cdot-0.2.28.tar.gz to build tracker '/tmp/pip-build-tracker-a_8xtad4' 2026-06-18T05:35:54,192 Created temporary directory: /tmp/pip-build-env-3j9nst3e 2026-06-18T05:35:54,197 Installing build dependencies: started 2026-06-18T05:35:54,198 Running command pip subprocess to install build dependencies 2026-06-18T05:35:55,323 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-18T05:35:55,793 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-18T05:35:55,816 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-18T05:35:57,618 Collecting setuptools>=42 2026-06-18T05:35:57,619 Obtaining dependency information for setuptools>=42 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-18T05:35:57,632 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-18T05:35:57,879 Collecting wheel 2026-06-18T05:35:57,880 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-06-18T05:35:57,893 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-06-18T05:35:58,073 Collecting packaging>=24.0 2026-06-18T05:35:58,073 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-06-18T05:35:58,086 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-06-18T05:35:58,273 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-18T05:35:58,294 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-18T05:35:58,377 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-18T05:35:58,421 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-18T05:35:58,445 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-18T05:35:58,536 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-18T05:36:01,281 Installing collected packages: setuptools, packaging, wheel 2026-06-18T05:36:04,675 Creating /tmp/pip-build-env-3j9nst3e/overlay/local/bin 2026-06-18T05:36:04,677 changing mode of /tmp/pip-build-env-3j9nst3e/overlay/local/bin/wheel to 755 2026-06-18T05:36:04,697 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-06-18T05:36:04,986 Installing build dependencies: finished with status 'done' 2026-06-18T05:36:04,992 Getting requirements to build wheel: started 2026-06-18T05:36:04,993 Running command Getting requirements to build wheel 2026-06-18T05:36:05,584 /tmp/pip-build-env-3j9nst3e/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-18T05:36:05,585 !! 2026-06-18T05:36:05,586 ******************************************************************************** 2026-06-18T05:36:05,586 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-18T05:36:05,587 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-18T05:36:05,587 or your builds will no longer be supported. 2026-06-18T05:36:05,588 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-18T05:36:05,589 ******************************************************************************** 2026-06-18T05:36:05,590 !! 2026-06-18T05:36:05,590 corresp(dist, value, root_dir) 2026-06-18T05:36:05,667 /tmp/pip-build-env-3j9nst3e/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-18T05:36:05,667 !! 2026-06-18T05:36:05,668 ******************************************************************************** 2026-06-18T05:36:05,669 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-18T05:36:05,670 License :: OSI Approved :: MIT License 2026-06-18T05:36:05,671 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-18T05:36:05,671 ******************************************************************************** 2026-06-18T05:36:05,672 !! 2026-06-18T05:36:05,673 dist._finalize_license_expression() 2026-06-18T05:36:05,674 /tmp/pip-build-env-3j9nst3e/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-18T05:36:05,675 !! 2026-06-18T05:36:05,676 ******************************************************************************** 2026-06-18T05:36:05,676 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-18T05:36:05,678 License :: OSI Approved :: MIT License 2026-06-18T05:36:05,679 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-18T05:36:05,679 ******************************************************************************** 2026-06-18T05:36:05,680 !! 2026-06-18T05:36:05,681 self._finalize_license_expression() 2026-06-18T05:36:05,685 running egg_info 2026-06-18T05:36:05,691 writing cdot.egg-info/PKG-INFO 2026-06-18T05:36:05,697 writing dependency_links to cdot.egg-info/dependency_links.txt 2026-06-18T05:36:05,701 writing requirements to cdot.egg-info/requires.txt 2026-06-18T05:36:05,702 writing top-level names to cdot.egg-info/top_level.txt 2026-06-18T05:36:05,727 reading manifest file 'cdot.egg-info/SOURCES.txt' 2026-06-18T05:36:05,731 adding license file 'LICENSE' 2026-06-18T05:36:05,736 writing manifest file 'cdot.egg-info/SOURCES.txt' 2026-06-18T05:36:05,834 Getting requirements to build wheel: finished with status 'done' 2026-06-18T05:36:05,838 Created temporary directory: /tmp/pip-modern-metadata-ttm6sz1o 2026-06-18T05:36:05,840 Preparing metadata (pyproject.toml): started 2026-06-18T05:36:05,841 Running command Preparing metadata (pyproject.toml) 2026-06-18T05:36:06,405 /tmp/pip-build-env-3j9nst3e/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-18T05:36:06,405 !! 2026-06-18T05:36:06,406 ******************************************************************************** 2026-06-18T05:36:06,407 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-18T05:36:06,408 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-18T05:36:06,408 or your builds will no longer be supported. 2026-06-18T05:36:06,409 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-18T05:36:06,410 ******************************************************************************** 2026-06-18T05:36:06,410 !! 2026-06-18T05:36:06,411 corresp(dist, value, root_dir) 2026-06-18T05:36:06,483 /tmp/pip-build-env-3j9nst3e/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-18T05:36:06,484 !! 2026-06-18T05:36:06,485 ******************************************************************************** 2026-06-18T05:36:06,485 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-18T05:36:06,486 License :: OSI Approved :: MIT License 2026-06-18T05:36:06,487 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-18T05:36:06,488 ******************************************************************************** 2026-06-18T05:36:06,489 !! 2026-06-18T05:36:06,489 dist._finalize_license_expression() 2026-06-18T05:36:06,490 /tmp/pip-build-env-3j9nst3e/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-18T05:36:06,491 !! 2026-06-18T05:36:06,492 ******************************************************************************** 2026-06-18T05:36:06,493 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-18T05:36:06,494 License :: OSI Approved :: MIT License 2026-06-18T05:36:06,496 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-18T05:36:06,496 ******************************************************************************** 2026-06-18T05:36:06,497 !! 2026-06-18T05:36:06,498 self._finalize_license_expression() 2026-06-18T05:36:06,499 running dist_info 2026-06-18T05:36:06,509 creating /tmp/pip-modern-metadata-ttm6sz1o/cdot.egg-info 2026-06-18T05:36:06,510 writing /tmp/pip-modern-metadata-ttm6sz1o/cdot.egg-info/PKG-INFO 2026-06-18T05:36:06,516 writing dependency_links to /tmp/pip-modern-metadata-ttm6sz1o/cdot.egg-info/dependency_links.txt 2026-06-18T05:36:06,519 writing requirements to /tmp/pip-modern-metadata-ttm6sz1o/cdot.egg-info/requires.txt 2026-06-18T05:36:06,520 writing top-level names to /tmp/pip-modern-metadata-ttm6sz1o/cdot.egg-info/top_level.txt 2026-06-18T05:36:06,522 writing manifest file '/tmp/pip-modern-metadata-ttm6sz1o/cdot.egg-info/SOURCES.txt' 2026-06-18T05:36:06,543 reading manifest file '/tmp/pip-modern-metadata-ttm6sz1o/cdot.egg-info/SOURCES.txt' 2026-06-18T05:36:06,545 adding license file 'LICENSE' 2026-06-18T05:36:06,548 writing manifest file '/tmp/pip-modern-metadata-ttm6sz1o/cdot.egg-info/SOURCES.txt' 2026-06-18T05:36:06,550 creating '/tmp/pip-modern-metadata-ttm6sz1o/cdot-0.2.28.dist-info' 2026-06-18T05:36:06,673 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-18T05:36:06,678 Source in /tmp/pip-wheel-80ylamju/cdot_650b2851c25f428f9a18f738401e0bf5 has version 0.2.28, which satisfies requirement cdot==0.2.28 from https://files.pythonhosted.org/packages/64/a1/6b2e5bb1f142002e500c6d365a39f4a0102f9e9173c0576eee6137243bbb/cdot-0.2.28.tar.gz 2026-06-18T05:36:06,679 Removed cdot==0.2.28 from https://files.pythonhosted.org/packages/64/a1/6b2e5bb1f142002e500c6d365a39f4a0102f9e9173c0576eee6137243bbb/cdot-0.2.28.tar.gz from build tracker '/tmp/pip-build-tracker-a_8xtad4' 2026-06-18T05:36:06,685 Created temporary directory: /tmp/pip-unpack-kkuqymd1 2026-06-18T05:36:06,685 Building wheels for collected packages: cdot 2026-06-18T05:36:06,690 Created temporary directory: /tmp/pip-wheel-s5vy5f8a 2026-06-18T05:36:06,690 Destination directory: /tmp/pip-wheel-s5vy5f8a 2026-06-18T05:36:06,692 Building wheel for cdot (pyproject.toml): started 2026-06-18T05:36:06,693 Running command Building wheel for cdot (pyproject.toml) 2026-06-18T05:36:07,237 /tmp/pip-build-env-3j9nst3e/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-18T05:36:07,237 !! 2026-06-18T05:36:07,238 ******************************************************************************** 2026-06-18T05:36:07,239 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-18T05:36:07,240 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-18T05:36:07,240 or your builds will no longer be supported. 2026-06-18T05:36:07,241 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-18T05:36:07,242 ******************************************************************************** 2026-06-18T05:36:07,243 !! 2026-06-18T05:36:07,244 corresp(dist, value, root_dir) 2026-06-18T05:36:07,310 /tmp/pip-build-env-3j9nst3e/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-18T05:36:07,311 !! 2026-06-18T05:36:07,312 ******************************************************************************** 2026-06-18T05:36:07,313 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-18T05:36:07,314 License :: OSI Approved :: MIT License 2026-06-18T05:36:07,315 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-18T05:36:07,316 ******************************************************************************** 2026-06-18T05:36:07,317 !! 2026-06-18T05:36:07,318 dist._finalize_license_expression() 2026-06-18T05:36:07,318 /tmp/pip-build-env-3j9nst3e/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-18T05:36:07,319 !! 2026-06-18T05:36:07,320 ******************************************************************************** 2026-06-18T05:36:07,320 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-18T05:36:07,321 License :: OSI Approved :: MIT License 2026-06-18T05:36:07,322 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-18T05:36:07,323 ******************************************************************************** 2026-06-18T05:36:07,324 !! 2026-06-18T05:36:07,324 self._finalize_license_expression() 2026-06-18T05:36:07,325 running bdist_wheel 2026-06-18T05:36:07,335 running build 2026-06-18T05:36:07,336 running build_py 2026-06-18T05:36:07,342 creating build/lib/cdot 2026-06-18T05:36:07,344 copying cdot/data_release.py -> build/lib/cdot 2026-06-18T05:36:07,346 copying cdot/__init__.py -> build/lib/cdot 2026-06-18T05:36:07,348 copying cdot/models.py -> build/lib/cdot 2026-06-18T05:36:07,351 creating build/lib/analysis 2026-06-18T05:36:07,351 copying analysis/combine_csv.py -> build/lib/analysis 2026-06-18T05:36:07,353 copying analysis/clean_hgvs_search_csvs.py -> build/lib/analysis 2026-06-18T05:36:07,355 copying analysis/build_clinvar_pairs.py -> build/lib/analysis 2026-06-18T05:36:07,357 copying analysis/compare_providers.py -> build/lib/analysis 2026-06-18T05:36:07,359 copying analysis/investigate_fails.py -> build/lib/analysis 2026-06-18T05:36:07,360 copying analysis/compute_benchmark.py -> build/lib/analysis 2026-06-18T05:36:07,362 copying analysis/compute_coverage.py -> build/lib/analysis 2026-06-18T05:36:07,364 copying analysis/inject_and_clean.py -> build/lib/analysis 2026-06-18T05:36:07,366 copying analysis/benchmark_resolution.py -> build/lib/analysis 2026-06-18T05:36:07,369 creating build/lib/cdot/hgvs 2026-06-18T05:36:07,370 copying cdot/hgvs/gene_hgvs.py -> build/lib/cdot/hgvs 2026-06-18T05:36:07,373 copying cdot/hgvs/clean.py -> build/lib/cdot/hgvs 2026-06-18T05:36:07,375 copying cdot/hgvs/__init__.py -> build/lib/cdot/hgvs 2026-06-18T05:36:07,378 creating build/lib/cdot/pyhgvs 2026-06-18T05:36:07,378 copying cdot/pyhgvs/__init__.py -> build/lib/cdot/pyhgvs 2026-06-18T05:36:07,380 copying cdot/pyhgvs/pyhgvs_transcript.py -> build/lib/cdot/pyhgvs 2026-06-18T05:36:07,383 creating build/lib/cdot/hgvs/dataproviders 2026-06-18T05:36:07,384 copying cdot/hgvs/dataproviders/fasta_seqfetcher.py -> build/lib/cdot/hgvs/dataproviders 2026-06-18T05:36:07,386 copying cdot/hgvs/dataproviders/ensembl_tark_data_provider.py -> build/lib/cdot/hgvs/dataproviders 2026-06-18T05:36:07,388 copying cdot/hgvs/dataproviders/seqfetcher.py -> build/lib/cdot/hgvs/dataproviders 2026-06-18T05:36:07,391 copying cdot/hgvs/dataproviders/json_data_provider.py -> build/lib/cdot/hgvs/dataproviders 2026-06-18T05:36:07,393 copying cdot/hgvs/dataproviders/__init__.py -> build/lib/cdot/hgvs/dataproviders 2026-06-18T05:36:07,395 running egg_info 2026-06-18T05:36:07,404 writing cdot.egg-info/PKG-INFO 2026-06-18T05:36:07,409 writing dependency_links to cdot.egg-info/dependency_links.txt 2026-06-18T05:36:07,412 writing requirements to cdot.egg-info/requires.txt 2026-06-18T05:36:07,413 writing top-level names to cdot.egg-info/top_level.txt 2026-06-18T05:36:07,425 reading manifest file 'cdot.egg-info/SOURCES.txt' 2026-06-18T05:36:07,428 adding license file 'LICENSE' 2026-06-18T05:36:07,432 writing manifest file 'cdot.egg-info/SOURCES.txt' 2026-06-18T05:36:07,447 installing to build/bdist.linux-armv7l/wheel 2026-06-18T05:36:07,447 running install 2026-06-18T05:36:07,470 running install_lib 2026-06-18T05:36:07,475 creating build/bdist.linux-armv7l/wheel 2026-06-18T05:36:07,477 creating build/bdist.linux-armv7l/wheel/cdot 2026-06-18T05:36:07,479 creating build/bdist.linux-armv7l/wheel/cdot/hgvs 2026-06-18T05:36:07,480 copying build/lib/cdot/hgvs/gene_hgvs.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs 2026-06-18T05:36:07,483 creating build/bdist.linux-armv7l/wheel/cdot/hgvs/dataproviders 2026-06-18T05:36:07,484 copying build/lib/cdot/hgvs/dataproviders/fasta_seqfetcher.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs/dataproviders 2026-06-18T05:36:07,486 copying build/lib/cdot/hgvs/dataproviders/ensembl_tark_data_provider.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs/dataproviders 2026-06-18T05:36:07,489 copying build/lib/cdot/hgvs/dataproviders/seqfetcher.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs/dataproviders 2026-06-18T05:36:07,491 copying build/lib/cdot/hgvs/dataproviders/json_data_provider.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs/dataproviders 2026-06-18T05:36:07,494 copying build/lib/cdot/hgvs/dataproviders/__init__.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs/dataproviders 2026-06-18T05:36:07,495 copying build/lib/cdot/hgvs/clean.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs 2026-06-18T05:36:07,498 copying build/lib/cdot/hgvs/__init__.py -> build/bdist.linux-armv7l/wheel/./cdot/hgvs 2026-06-18T05:36:07,500 creating build/bdist.linux-armv7l/wheel/cdot/pyhgvs 2026-06-18T05:36:07,501 copying build/lib/cdot/pyhgvs/__init__.py -> build/bdist.linux-armv7l/wheel/./cdot/pyhgvs 2026-06-18T05:36:07,503 copying build/lib/cdot/pyhgvs/pyhgvs_transcript.py -> build/bdist.linux-armv7l/wheel/./cdot/pyhgvs 2026-06-18T05:36:07,505 copying build/lib/cdot/data_release.py -> build/bdist.linux-armv7l/wheel/./cdot 2026-06-18T05:36:07,507 copying build/lib/cdot/__init__.py -> build/bdist.linux-armv7l/wheel/./cdot 2026-06-18T05:36:07,508 copying build/lib/cdot/models.py -> build/bdist.linux-armv7l/wheel/./cdot 2026-06-18T05:36:07,511 creating build/bdist.linux-armv7l/wheel/analysis 2026-06-18T05:36:07,512 copying build/lib/analysis/combine_csv.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-18T05:36:07,514 copying build/lib/analysis/clean_hgvs_search_csvs.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-18T05:36:07,515 copying build/lib/analysis/build_clinvar_pairs.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-18T05:36:07,517 copying build/lib/analysis/compare_providers.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-18T05:36:07,519 copying build/lib/analysis/investigate_fails.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-18T05:36:07,520 copying build/lib/analysis/compute_benchmark.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-18T05:36:07,522 copying build/lib/analysis/compute_coverage.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-18T05:36:07,524 copying build/lib/analysis/inject_and_clean.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-18T05:36:07,527 copying build/lib/analysis/benchmark_resolution.py -> build/bdist.linux-armv7l/wheel/./analysis 2026-06-18T05:36:07,529 running install_egg_info 2026-06-18T05:36:07,534 Copying cdot.egg-info to build/bdist.linux-armv7l/wheel/./cdot-0.2.28-py3.11.egg-info 2026-06-18T05:36:07,543 running install_scripts 2026-06-18T05:36:07,552 creating build/bdist.linux-armv7l/wheel/cdot-0.2.28.dist-info/WHEEL 2026-06-18T05:36:07,554 creating '/tmp/pip-wheel-s5vy5f8a/.tmp-d5_y9lhf/cdot-0.2.28-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-18T05:36:07,558 adding 'analysis/benchmark_resolution.py' 2026-06-18T05:36:07,560 adding 'analysis/build_clinvar_pairs.py' 2026-06-18T05:36:07,561 adding 'analysis/clean_hgvs_search_csvs.py' 2026-06-18T05:36:07,563 adding 'analysis/combine_csv.py' 2026-06-18T05:36:07,564 adding 'analysis/compare_providers.py' 2026-06-18T05:36:07,565 adding 'analysis/compute_benchmark.py' 2026-06-18T05:36:07,567 adding 'analysis/compute_coverage.py' 2026-06-18T05:36:07,570 adding 'analysis/inject_and_clean.py' 2026-06-18T05:36:07,571 adding 'analysis/investigate_fails.py' 2026-06-18T05:36:07,573 adding 'cdot/__init__.py' 2026-06-18T05:36:07,574 adding 'cdot/data_release.py' 2026-06-18T05:36:07,576 adding 'cdot/models.py' 2026-06-18T05:36:07,578 adding 'cdot/hgvs/__init__.py' 2026-06-18T05:36:07,582 adding 'cdot/hgvs/clean.py' 2026-06-18T05:36:07,585 adding 'cdot/hgvs/gene_hgvs.py' 2026-06-18T05:36:07,587 adding 'cdot/hgvs/dataproviders/__init__.py' 2026-06-18T05:36:07,590 adding 'cdot/hgvs/dataproviders/ensembl_tark_data_provider.py' 2026-06-18T05:36:07,591 adding 'cdot/hgvs/dataproviders/fasta_seqfetcher.py' 2026-06-18T05:36:07,596 adding 'cdot/hgvs/dataproviders/json_data_provider.py' 2026-06-18T05:36:07,597 adding 'cdot/hgvs/dataproviders/seqfetcher.py' 2026-06-18T05:36:07,599 adding 'cdot/pyhgvs/__init__.py' 2026-06-18T05:36:07,600 adding 'cdot/pyhgvs/pyhgvs_transcript.py' 2026-06-18T05:36:07,603 adding 'cdot-0.2.28.dist-info/licenses/LICENSE' 2026-06-18T05:36:07,604 adding 'cdot-0.2.28.dist-info/METADATA' 2026-06-18T05:36:07,605 adding 'cdot-0.2.28.dist-info/WHEEL' 2026-06-18T05:36:07,606 adding 'cdot-0.2.28.dist-info/top_level.txt' 2026-06-18T05:36:07,607 adding 'cdot-0.2.28.dist-info/RECORD' 2026-06-18T05:36:07,609 removing build/bdist.linux-armv7l/wheel 2026-06-18T05:36:07,716 Building wheel for cdot (pyproject.toml): finished with status 'done' 2026-06-18T05:36:07,722 Created wheel for cdot: filename=cdot-0.2.28-py3-none-any.whl size=66840 sha256=b141e938ad548db8696eed0c75d3775545614dd072a4333c4f54facce8d7c3a7 2026-06-18T05:36:07,724 Stored in directory: /tmp/pip-ephem-wheel-cache-4nz6y2g_/wheels/76/3f/aa/3e0e037fd6f54bc57500d2c56c2a688605469969aac58ae025 2026-06-18T05:36:07,735 Successfully built cdot 2026-06-18T05:36:07,741 Removed build tracker: '/tmp/pip-build-tracker-a_8xtad4'