2026-06-18T13:31:55,760 Created temporary directory: /tmp/pip-ephem-wheel-cache-203whwq4
2026-06-18T13:31:55,762 Created temporary directory: /tmp/pip-build-tracker-rlqwf0ib
2026-06-18T13:31:55,763 Initialized build tracking at /tmp/pip-build-tracker-rlqwf0ib
2026-06-18T13:31:55,763 Created build tracker: /tmp/pip-build-tracker-rlqwf0ib
2026-06-18T13:31:55,764 Entered build tracker: /tmp/pip-build-tracker-rlqwf0ib
2026-06-18T13:31:55,764 Created temporary directory: /tmp/pip-wheel-82uijtxy
2026-06-18T13:31:55,768 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-18T13:31:55,770 Created temporary directory: /tmp/pip-ephem-wheel-cache-_874uk2s
2026-06-18T13:31:55,791 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-18T13:31:55,795 2 location(s) to search for versions of oncoref:
2026-06-18T13:31:55,795 * https://pypi.org/simple/oncoref/
2026-06-18T13:31:55,795 * https://www.piwheels.org/simple/oncoref/
2026-06-18T13:31:55,796 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-06-18T13:31:55,797 Getting page https://pypi.org/simple/oncoref/
2026-06-18T13:31:55,798 Found index url https://pypi.org/simple
2026-06-18T13:31:56,048 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-06-18T13:31:56,050   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-18T13:31:56,051   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-06-18T13:31:56,052   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-18T13:31:56,053   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-06-18T13:31:56,054 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-06-18T13:31:56,054 Getting page https://www.piwheels.org/simple/oncoref/
2026-06-18T13:31:56,056 Found index url https://www.piwheels.org/simple
2026-06-18T13:31:56,338 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
2026-06-18T13:31:56,339   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-18T13:31:56,340 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-06-18T13:31:56,341 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-06-18T13:31:56,359 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-06-18T13:31:56,377 Collecting oncoref==1.7.0
2026-06-18T13:31:56,379   Created temporary directory: /tmp/pip-unpack-2wffd68e
2026-06-18T13:31:56,706   Downloading oncoref-1.7.0.tar.gz (1.7 MB)
2026-06-18T13:31:57,368   Added oncoref==1.7.0 from https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-rlqwf0ib'
2026-06-18T13:31:57,375   Created temporary directory: /tmp/pip-build-env-hdl9dxft
2026-06-18T13:31:57,379   Installing build dependencies: started
2026-06-18T13:31:57,380   Running command pip subprocess to install build dependencies
2026-06-18T13:31:58,547   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-06-18T13:31:58,959   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-18T13:31:58,983   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-18T13:32:01,001   Collecting setuptools>=61.0
2026-06-18T13:32:01,002     Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-06-18T13:32:01,015     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-06-18T13:32:01,253   Collecting wheel
2026-06-18T13:32:01,254     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-06-18T13:32:01,267     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-06-18T13:32:01,450   Collecting packaging>=24.0
2026-06-18T13:32:01,451     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-06-18T13:32:01,464     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-06-18T13:32:01,653   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-18T13:32:01,675   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-18T13:32:01,764   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-18T13:32:01,795   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-18T13:32:01,820   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-18T13:32:01,909   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-18T13:32:04,668   Installing collected packages: setuptools, packaging, wheel
2026-06-18T13:32:08,089     Creating /tmp/pip-build-env-hdl9dxft/overlay/local/bin
2026-06-18T13:32:08,091     changing mode of /tmp/pip-build-env-hdl9dxft/overlay/local/bin/wheel to 755
2026-06-18T13:32:08,113   Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0
2026-06-18T13:32:08,398   Installing build dependencies: finished with status 'done'
2026-06-18T13:32:08,404   Getting requirements to build wheel: started
2026-06-18T13:32:08,406   Running command Getting requirements to build wheel
2026-06-18T13:32:09,333   running egg_info
2026-06-18T13:32:09,338   writing oncoref.egg-info/PKG-INFO
2026-06-18T13:32:09,344   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-18T13:32:09,346   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-18T13:32:09,348   writing requirements to oncoref.egg-info/requires.txt
2026-06-18T13:32:09,350   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-18T13:32:09,384   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-18T13:32:09,392   reading manifest template 'MANIFEST.in'
2026-06-18T13:32:09,394   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-18T13:32:09,395   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-18T13:32:09,396   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-18T13:32:09,398   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-18T13:32:09,398   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-18T13:32:09,399   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-18T13:32:09,400   adding license file 'LICENSE'
2026-06-18T13:32:09,408   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-18T13:32:09,505   Getting requirements to build wheel: finished with status 'done'
2026-06-18T13:32:09,508   Created temporary directory: /tmp/pip-modern-metadata-3ot7w21m
2026-06-18T13:32:09,511   Preparing metadata (pyproject.toml): started
2026-06-18T13:32:09,512   Running command Preparing metadata (pyproject.toml)
2026-06-18T13:32:10,157   running dist_info
2026-06-18T13:32:10,167   creating /tmp/pip-modern-metadata-3ot7w21m/oncoref.egg-info
2026-06-18T13:32:10,168   writing /tmp/pip-modern-metadata-3ot7w21m/oncoref.egg-info/PKG-INFO
2026-06-18T13:32:10,174   writing dependency_links to /tmp/pip-modern-metadata-3ot7w21m/oncoref.egg-info/dependency_links.txt
2026-06-18T13:32:10,175   writing entry points to /tmp/pip-modern-metadata-3ot7w21m/oncoref.egg-info/entry_points.txt
2026-06-18T13:32:10,177   writing requirements to /tmp/pip-modern-metadata-3ot7w21m/oncoref.egg-info/requires.txt
2026-06-18T13:32:10,178   writing top-level names to /tmp/pip-modern-metadata-3ot7w21m/oncoref.egg-info/top_level.txt
2026-06-18T13:32:10,180   writing manifest file '/tmp/pip-modern-metadata-3ot7w21m/oncoref.egg-info/SOURCES.txt'
2026-06-18T13:32:10,212   reading manifest file '/tmp/pip-modern-metadata-3ot7w21m/oncoref.egg-info/SOURCES.txt'
2026-06-18T13:32:10,214   reading manifest template 'MANIFEST.in'
2026-06-18T13:32:10,216   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-18T13:32:10,217   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-18T13:32:10,218   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-18T13:32:10,219   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-18T13:32:10,220   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-18T13:32:10,220   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-18T13:32:10,221   adding license file 'LICENSE'
2026-06-18T13:32:10,227   writing manifest file '/tmp/pip-modern-metadata-3ot7w21m/oncoref.egg-info/SOURCES.txt'
2026-06-18T13:32:10,228   creating '/tmp/pip-modern-metadata-3ot7w21m/oncoref-1.7.0.dist-info'
2026-06-18T13:32:10,353   Preparing metadata (pyproject.toml): finished with status 'done'
2026-06-18T13:32:10,358   Source in /tmp/pip-wheel-82uijtxy/oncoref_3a827a6a78b84c69aaf49471707d3095 has version 1.7.0, which satisfies requirement oncoref==1.7.0 from https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz
2026-06-18T13:32:10,359   Removed oncoref==1.7.0 from https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-rlqwf0ib'
2026-06-18T13:32:10,366 Created temporary directory: /tmp/pip-unpack-ocs0b33o
2026-06-18T13:32:10,366 Building wheels for collected packages: oncoref
2026-06-18T13:32:10,371   Created temporary directory: /tmp/pip-wheel-zl9dhlrx
2026-06-18T13:32:10,372   Destination directory: /tmp/pip-wheel-zl9dhlrx
2026-06-18T13:32:10,374   Building wheel for oncoref (pyproject.toml): started
2026-06-18T13:32:10,376   Running command Building wheel for oncoref (pyproject.toml)
2026-06-18T13:32:11,002   running bdist_wheel
2026-06-18T13:32:11,020   running build
2026-06-18T13:32:11,020   running build_py
2026-06-18T13:32:11,027   creating build/lib/oncoref
2026-06-18T13:32:11,029   copying oncoref/load_dataset.py -> build/lib/oncoref
2026-06-18T13:32:11,032   copying oncoref/catalog.py -> build/lib/oncoref
2026-06-18T13:32:11,034   copying oncoref/ici.py -> build/lib/oncoref
2026-06-18T13:32:11,037   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-06-18T13:32:11,040   copying oncoref/apd1.py -> build/lib/oncoref
2026-06-18T13:32:11,042   copying oncoref/cancer_types.py -> build/lib/oncoref
2026-06-18T13:32:11,044   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-06-18T13:32:11,047   copying oncoref/reference_data.py -> build/lib/oncoref
2026-06-18T13:32:11,049   copying oncoref/version.py -> build/lib/oncoref
2026-06-18T13:32:11,051   copying oncoref/expression_builders.py -> build/lib/oncoref
2026-06-18T13:32:11,053   copying oncoref/plots.py -> build/lib/oncoref
2026-06-18T13:32:11,057   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-06-18T13:32:11,059   copying oncoref/data_manifest.py -> build/lib/oncoref
2026-06-18T13:32:11,062   copying oncoref/cancer_genes.py -> build/lib/oncoref
2026-06-18T13:32:11,065   copying oncoref/cli.py -> build/lib/oncoref
2026-06-18T13:32:11,068   copying oncoref/cta.py -> build/lib/oncoref
2026-06-18T13:32:11,070   copying oncoref/gene_families.py -> build/lib/oncoref
2026-06-18T13:32:11,073   copying oncoref/proteoforms.py -> build/lib/oncoref
2026-06-18T13:32:11,076   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-06-18T13:32:11,078   copying oncoref/response_signatures.py -> build/lib/oncoref
2026-06-18T13:32:11,080   copying oncoref/expression_registry.py -> build/lib/oncoref
2026-06-18T13:32:11,083   copying oncoref/normalization.py -> build/lib/oncoref
2026-06-18T13:32:11,086   copying oncoref/incidence.py -> build/lib/oncoref
2026-06-18T13:32:11,088   copying oncoref/__init__.py -> build/lib/oncoref
2026-06-18T13:32:11,091   copying oncoref/peptides.py -> build/lib/oncoref
2026-06-18T13:32:11,093   copying oncoref/tmb.py -> build/lib/oncoref
2026-06-18T13:32:11,096   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-06-18T13:32:11,098   copying oncoref/genome.py -> build/lib/oncoref
2026-06-18T13:32:11,101   copying oncoref/gene_qc.py -> build/lib/oncoref
2026-06-18T13:32:11,103   copying oncoref/hpa.py -> build/lib/oncoref
2026-06-18T13:32:11,105   copying oncoref/coverage.py -> build/lib/oncoref
2026-06-18T13:32:11,107   copying oncoref/expression.py -> build/lib/oncoref
2026-06-18T13:32:11,111   copying oncoref/fusions.py -> build/lib/oncoref
2026-06-18T13:32:11,114   copying oncoref/samples.py -> build/lib/oncoref
2026-06-18T13:32:11,116   copying oncoref/cta_tissues.py -> build/lib/oncoref
2026-06-18T13:32:11,130   creating build/lib/oncoref/data
2026-06-18T13:32:11,131   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,134   copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,136   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,139   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,141   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,145   copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,147   copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,149   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,152   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,157   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,160   copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,163   copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,165   copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,167   copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,171   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,173   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,177   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,182   copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,184   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,187   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,189   copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,192   copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,194   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,199   copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,201   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,204   copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,206   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,209   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,212   copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,215   copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,223   copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,226   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,229   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,235   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,240   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,242   copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,245   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,247   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,252   copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,254   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,257   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,259   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,261   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,263   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,266   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,269   copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,272   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,275   copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,278   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,280   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,282   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-06-18T13:32:11,285   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-06-18T13:32:11,291   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-06-18T13:32:11,301   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-06-18T13:32:11,313   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-06-18T13:32:11,327   installing to build/bdist.linux-armv7l/wheel
2026-06-18T13:32:11,327   running install
2026-06-18T13:32:11,350   running install_lib
2026-06-18T13:32:11,355   creating build/bdist.linux-armv7l/wheel
2026-06-18T13:32:11,358   creating build/bdist.linux-armv7l/wheel/oncoref
2026-06-18T13:32:11,359   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,362   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,364   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,367   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,369   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,371   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,373   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,376   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,378   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,380   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,383   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,386   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,389   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,392   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,394   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,397   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,399   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,402   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,404   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,407   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,409   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,411   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,414   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,416   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,418   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,421   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,425   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-06-18T13:32:11,426   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,429   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,431   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,434   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,436   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,440   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,452   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,455   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,469   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,471   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,472   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,477   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,479   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,481   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,483   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,484   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,487   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,489   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,491   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,496   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,498   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,500   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,502   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,504   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,506   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,509   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,510   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,512   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,521   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,523   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,525   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,528   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,530   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,538   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,540   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,543   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,548   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,552   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,554   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,556   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,558   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,562   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,563   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,566   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,567   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,569   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,571   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,573   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,576   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,579   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,581   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,584   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,587   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,589   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,591   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-18T13:32:11,592   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,594   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,597   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,599   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,601   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,603   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,606   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,609   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,610   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-18T13:32:11,612   running install_egg_info
2026-06-18T13:32:11,621   running egg_info
2026-06-18T13:32:11,627   writing oncoref.egg-info/PKG-INFO
2026-06-18T13:32:11,631   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-18T13:32:11,633   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-18T13:32:11,635   writing requirements to oncoref.egg-info/requires.txt
2026-06-18T13:32:11,636   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-18T13:32:11,654   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-18T13:32:11,663   reading manifest template 'MANIFEST.in'
2026-06-18T13:32:11,664   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-18T13:32:11,666   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-18T13:32:11,667   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-18T13:32:11,668   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-18T13:32:11,669   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-18T13:32:11,669   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-18T13:32:11,670   adding license file 'LICENSE'
2026-06-18T13:32:11,678   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-18T13:32:11,679   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.7.0-py3.11.egg-info
2026-06-18T13:32:11,692   running install_scripts
2026-06-18T13:32:11,704   creating build/bdist.linux-armv7l/wheel/oncoref-1.7.0.dist-info/WHEEL
2026-06-18T13:32:11,706   creating '/tmp/pip-wheel-zl9dhlrx/.tmp-28shib44/oncoref-1.7.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-18T13:32:11,711   adding 'oncoref/__init__.py'
2026-06-18T13:32:11,713   adding 'oncoref/apd1.py'
2026-06-18T13:32:11,715   adding 'oncoref/cancer_genes.py'
2026-06-18T13:32:11,721   adding 'oncoref/cancer_types.py'
2026-06-18T13:32:11,725   adding 'oncoref/catalog.py'
2026-06-18T13:32:11,729   adding 'oncoref/cli.py'
2026-06-18T13:32:11,732   adding 'oncoref/coverage.py'
2026-06-18T13:32:11,735   adding 'oncoref/cta.py'
2026-06-18T13:32:11,740   adding 'oncoref/cta_regen.py'
2026-06-18T13:32:11,742   adding 'oncoref/cta_tissues.py'
2026-06-18T13:32:11,745   adding 'oncoref/data_bundle.py'
2026-06-18T13:32:11,749   adding 'oncoref/data_manifest.py'
2026-06-18T13:32:11,759   adding 'oncoref/expression.py'
2026-06-18T13:32:11,763   adding 'oncoref/expression_builders.py'
2026-06-18T13:32:11,766   adding 'oncoref/expression_engine.py'
2026-06-18T13:32:11,768   adding 'oncoref/expression_registry.py'
2026-06-18T13:32:11,770   adding 'oncoref/fusions.py'
2026-06-18T13:32:11,772   adding 'oncoref/gene_families.py'
2026-06-18T13:32:11,775   adding 'oncoref/gene_ids.py'
2026-06-18T13:32:11,777   adding 'oncoref/gene_qc.py'
2026-06-18T13:32:11,780   adding 'oncoref/genome.py'
2026-06-18T13:32:11,782   adding 'oncoref/hpa.py'
2026-06-18T13:32:11,786   adding 'oncoref/ici.py'
2026-06-18T13:32:11,788   adding 'oncoref/incidence.py'
2026-06-18T13:32:11,790   adding 'oncoref/load_dataset.py'
2026-06-18T13:32:11,796   adding 'oncoref/normalization.py'
2026-06-18T13:32:11,798   adding 'oncoref/peptides.py'
2026-06-18T13:32:11,808   adding 'oncoref/plots.py'
2026-06-18T13:32:11,811   adding 'oncoref/proteoforms.py'
2026-06-18T13:32:11,814   adding 'oncoref/reference_data.py'
2026-06-18T13:32:11,815   adding 'oncoref/response_signatures.py'
2026-06-18T13:32:11,816   adding 'oncoref/samples.py'
2026-06-18T13:32:11,818   adding 'oncoref/source_matrices.py'
2026-06-18T13:32:11,819   adding 'oncoref/tmb.py'
2026-06-18T13:32:11,821   adding 'oncoref/version.py'
2026-06-18T13:32:11,824   adding 'oncoref/data/cancer-apd1-response.csv'
2026-06-18T13:32:11,826   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-06-18T13:32:11,827   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-06-18T13:32:11,832   adding 'oncoref/data/cancer-driver-genes.csv'
2026-06-18T13:32:11,834   adding 'oncoref/data/cancer-driver-variants.csv'
2026-06-18T13:32:11,837   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-06-18T13:32:11,838   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-06-18T13:32:11,841   adding 'oncoref/data/cancer-fusions.csv'
2026-06-18T13:32:11,859   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-06-18T13:32:11,864   adding 'oncoref/data/cancer-ici-response.csv'
2026-06-18T13:32:11,865   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-06-18T13:32:11,880   adding 'oncoref/data/cancer-key-genes.csv'
2026-06-18T13:32:11,882   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-06-18T13:32:11,883   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-06-18T13:32:11,911   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-06-18T13:32:11,915   adding 'oncoref/data/cancer-response-signatures.csv'
2026-06-18T13:32:11,916   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-06-18T13:32:11,927   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-06-18T13:32:11,930   adding 'oncoref/data/cancer-tmb.csv'
2026-06-18T13:32:11,933   adding 'oncoref/data/cancer-type-genes.csv'
2026-06-18T13:32:11,937   adding 'oncoref/data/cancer-type-registry.csv'
2026-06-18T13:32:11,938   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-06-18T13:32:11,991   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-06-18T13:32:11,997   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-06-18T13:32:12,001   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-06-18T13:32:12,011   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-06-18T13:32:12,014   adding 'oncoref/data/cohort-registry.csv'
2026-06-18T13:32:12,015   adding 'oncoref/data/cta-candidate-references.csv'
2026-06-18T13:32:12,016   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-06-18T13:32:12,018   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-06-18T13:32:12,019   adding 'oncoref/data/disease-state-rules.csv'
2026-06-18T13:32:12,046   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-06-18T13:32:12,052   adding 'oncoref/data/expression_sources.yaml'
2026-06-18T13:32:12,054   adding 'oncoref/data/extra-tx-mappings.csv'
2026-06-18T13:32:12,055   adding 'oncoref/data/family-burden-map.csv'
2026-06-18T13:32:12,057   adding 'oncoref/data/fusion-expression-effects.csv'
2026-06-18T13:32:12,058   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-06-18T13:32:12,059   adding 'oncoref/data/hemoglobin-genes.csv'
2026-06-18T13:32:12,061   adding 'oncoref/data/histone-genes.csv'
2026-06-18T13:32:12,062   adding 'oncoref/data/housekeeping-genes.csv'
2026-06-18T13:32:12,063   adding 'oncoref/data/mitochondrial-genes.csv'
2026-06-18T13:32:12,065   adding 'oncoref/data/narrative-gene-sets.csv'
2026-06-18T13:32:12,105   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-06-18T13:32:12,109   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-06-18T13:32:12,111   adding 'oncoref/data/numt-pseudogenes.csv'
2026-06-18T13:32:12,112   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-06-18T13:32:12,115   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-06-18T13:32:12,117   adding 'oncoref/data/proteoform-groups.csv'
2026-06-18T13:32:12,118   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-06-18T13:32:12,120   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-06-18T13:32:12,126   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-06-18T13:32:12,129   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-06-18T13:32:12,148   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-06-18T13:32:12,150   adding 'oncoref/data/source-matrices.csv'
2026-06-18T13:32:12,151   adding 'oncoref/data/tissue-burden-map.csv'
2026-06-18T13:32:12,155   adding 'oncoref-1.7.0.dist-info/licenses/LICENSE'
2026-06-18T13:32:12,157   adding 'oncoref-1.7.0.dist-info/METADATA'
2026-06-18T13:32:12,158   adding 'oncoref-1.7.0.dist-info/WHEEL'
2026-06-18T13:32:12,159   adding 'oncoref-1.7.0.dist-info/entry_points.txt'
2026-06-18T13:32:12,160   adding 'oncoref-1.7.0.dist-info/top_level.txt'
2026-06-18T13:32:12,161   adding 'oncoref-1.7.0.dist-info/RECORD'
2026-06-18T13:32:12,181   removing build/bdist.linux-armv7l/wheel
2026-06-18T13:32:12,300   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-06-18T13:32:12,339   Created wheel for oncoref: filename=oncoref-1.7.0-py3-none-any.whl size=1626212 sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed
2026-06-18T13:32:12,340   Stored in directory: /tmp/pip-ephem-wheel-cache-_874uk2s/wheels/ae/74/cc/26893a64889bd8225d0556c7f6797723b702c903cc1fe00a28
2026-06-18T13:32:12,354 Successfully built oncoref
2026-06-18T13:32:12,394 Removed build tracker: '/tmp/pip-build-tracker-rlqwf0ib'