2026-06-23T11:39:44,620 Created temporary directory: /tmp/pip-ephem-wheel-cache-4jngqfpg 2026-06-23T11:39:44,621 Created temporary directory: /tmp/pip-build-tracker-diw0tjym 2026-06-23T11:39:44,622 Initialized build tracking at /tmp/pip-build-tracker-diw0tjym 2026-06-23T11:39:44,622 Created build tracker: /tmp/pip-build-tracker-diw0tjym 2026-06-23T11:39:44,623 Entered build tracker: /tmp/pip-build-tracker-diw0tjym 2026-06-23T11:39:44,624 Created temporary directory: /tmp/pip-wheel-35mymmum 2026-06-23T11:39:44,627 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-23T11:39:44,629 Created temporary directory: /tmp/pip-ephem-wheel-cache-41xe7rt4 2026-06-23T11:39:44,652 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-23T11:39:44,656 2 location(s) to search for versions of scipion-em-tomo: 2026-06-23T11:39:44,656 * https://pypi.org/simple/scipion-em-tomo/ 2026-06-23T11:39:44,656 * https://www.piwheels.org/simple/scipion-em-tomo/ 2026-06-23T11:39:44,657 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-tomo/ 2026-06-23T11:39:44,657 Getting page https://pypi.org/simple/scipion-em-tomo/ 2026-06-23T11:39:44,659 Found index url https://pypi.org/simple 2026-06-23T11:39:44,818 Fetched page https://pypi.org/simple/scipion-em-tomo/ as application/vnd.pypi.simple.v1+json 2026-06-23T11:39:44,834 Found link https://files.pythonhosted.org/packages/4b/4c/5b70aecaa1ac9210c87ace96840ea974ccd610a88008cb14ad1274ccb307/scipion-em-tomo-0.0.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 0.0.1 2026-06-23T11:39:44,835 Found link https://files.pythonhosted.org/packages/64/5d/767f112679414c6fc0068867f3a600f2e1d2be0b39b70902d21ae0d8b6bb/scipion-em-tomo-3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.0 2026-06-23T11:39:44,836 Found link https://files.pythonhosted.org/packages/89/b7/09e587c8eebf58e9d466cd4f03dc25961c43aec8cb28a16b905b9a184dbe/scipion-em-tomo-3.0.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.2 2026-06-23T11:39:44,837 Found link https://files.pythonhosted.org/packages/ee/b3/696e070fef608e88eac8cbfbb6751cc4a6ffb6b0da0f7ab95d5c8bac77eb/scipion-em-tomo-3.0.4.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.4 2026-06-23T11:39:44,838 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/c9/6a/d73fa696ec196b9920750e18e346f24f251d5563427b335dde8418050d60/scipion_em_tomo-3.0.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,838 Found link https://files.pythonhosted.org/packages/1e/79/1fe5055e381bc7efc7a2326c4fb955d3bfad453b43f65a3e4c321aaacade/scipion-em-tomo-3.0.5.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.5 2026-06-23T11:39:44,839 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/f1/07/cd52d74299dbbc1f12a5c91a690482728f8df411325608f9d496ddaa2873/scipion_em_tomo-3.0.5-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,840 Found link https://files.pythonhosted.org/packages/7d/7e/82239c4147b00b92b5d8569e693c1b65319faebe69724d9d42c3e2d1d02b/scipion-em-tomo-3.0.6.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.6 2026-06-23T11:39:44,841 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/c1/2c/2b352785ef9211e1666d3849e35b1705b4a7a3f0c22a7881b65c8bc8aef0/scipion_em_tomo-3.0.6-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,843 Found link https://files.pythonhosted.org/packages/48/1b/218c21edfe5a3e136b5cb310cb2a79795c0d9e282cff00262057a7595d5a/scipion-em-tomo-3.0.7.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.7 2026-06-23T11:39:44,845 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/71/b0/fd5ce9ecbf5006136e2af54c1174acefe8496140a5665e270e8e68f34748/scipion_em_tomo-3.0.7-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,846 Found link https://files.pythonhosted.org/packages/09/7f/12c990023ae8f1514968476800cf90017bb578f5747fd1d2a64e133b7e27/scipion-em-tomo-3.0.8.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.8 2026-06-23T11:39:44,846 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/d9/64/6b4b1293fe099422194d59ccf5a12375e481030341e8ddbdb198b8247d04/scipion_em_tomo-3.0.8-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,847 Found link https://files.pythonhosted.org/packages/68/74/7bdf7f0557e323371550c0a64e241512ecc24784abcf9e75338e4fbf94a5/scipion-em-tomo-3.0.9.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.9 2026-06-23T11:39:44,848 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/05/92/cd9a65cca32fdaf357d074ce1d2f51858fe2378a6e8b72539d26561418e3/scipion_em_tomo-3.0.9-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,848 Found link https://files.pythonhosted.org/packages/0b/fd/509e9148c9f6b8eb192a3aa201f4728b9233655b0f4a90183228b0037f77/scipion-em-tomo-3.0.10.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.10 2026-06-23T11:39:44,849 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/d6/c1/ddb298fc9b11aa8206e120231583efa6d9f2bfc02c925f9a316b093f49fa/scipion_em_tomo-3.0.10-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,849 Found link https://files.pythonhosted.org/packages/dc/7f/834745f70596330af5c0af882ce5aea8074e288b96d0e5c12eb0bc4d0c1e/scipion-em-tomo-3.0.11.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.11 2026-06-23T11:39:44,850 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/a8/9d/95d4f3fc3c8e1d72ce99a4cc25646174a3751cae7c08cf7984ea1a111e79/scipion_em_tomo-3.0.11-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,851 Found link https://files.pythonhosted.org/packages/a2/8c/13644e0a04b94ba99ffdf7d61687bf2b76b4424efd431f8105d9849f4fe1/scipion-em-tomo-3.0.12.tar.gz (from 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https://files.pythonhosted.org/packages/d3/82/9a509444c48d8f1696c0c8760e236d0a788ab8eff20af46bac3864724eef/scipion-em-tomo-3.0.14.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.14 2026-06-23T11:39:44,854 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/a4/ee/d9bd2c12c01b1b21dc05657d9c193e13a546048aab39056150a7132d5ec4/scipion_em_tomo-3.0.14-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,855 Found link https://files.pythonhosted.org/packages/3b/2a/11bdfc8ac9198b2f13fae692999cef17a9d43ebafb628ed811e0ff6e61ae/scipion-em-tomo-3.0.15.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.15 2026-06-23T11:39:44,856 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/7d/84/b48cbf33ca559ec97210f164bedcb4e88fba1a6bed30049ff27f8dfb1c77/scipion_em_tomo-3.0.15-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,856 Found link https://files.pythonhosted.org/packages/52/2d/402e7f7e52cb4fd2d104308ecc058d05c10c96e2115c5b2d84a9df5efb3f/scipion-em-tomo-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.0 2026-06-23T11:39:44,857 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/6e/0d/928f81e2a365e5a359c03eeed1c6fac1df920aa91de65f87b54d56301780/scipion_em_tomo-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,857 Found link https://files.pythonhosted.org/packages/ed/62/12eeec013e35d9cb4b60162edafdbab91aab497aa1a99ed1d0dbb22c7d86/scipion-em-tomo-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.1 2026-06-23T11:39:44,858 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/c0/ec/7fe29c40cc3dba11359fff2b78d8608c88984da2364ce2e35831105023c9/scipion_em_tomo-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,859 Found link https://files.pythonhosted.org/packages/b8/d2/40f08695253523e3c5bdba6696f5d624b9bcc7f4ad634564c8981dd66fd4/scipion-em-tomo-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.2 2026-06-23T11:39:44,859 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/0e/7d/2bbc9681e4e8a611697b4ebcca09c252d5271de849b36929199f428690ef/scipion_em_tomo-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,860 Found link https://files.pythonhosted.org/packages/89/c9/41a4d33c66adfd6a4a977542f149d2709f8b52656fd59478bd5c408ff8cd/scipion-em-tomo-3.1.3.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.3 2026-06-23T11:39:44,860 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/b7/a5/053968418f445baf5ba5e9154bb46a995acc919238bf44d1143f421020ee/scipion_em_tomo-3.1.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,861 Found link https://files.pythonhosted.org/packages/22/d6/aa06a0d73aa4688cb4530fb3b78473d16af8e86d57c9b2fc731f192bdded/scipion-em-tomo-3.1.4.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.4 2026-06-23T11:39:44,862 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/67/12/385eb1c78f220e90d6bbab27d262283cb8face0e865c212291003662e2da/scipion_em_tomo-3.1.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,863 Found link https://files.pythonhosted.org/packages/2b/d0/ff2c8658221f1f87df302baa72d614194552e6dc59e17c688de1185c6a34/scipion-em-tomo-3.1.5.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.5 2026-06-23T11:39:44,863 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/d6/20/49484a7eec2b228822e29a65e6625bd70471b506a8e9ad6c053b01ab0327/scipion_em_tomo-3.1.5-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,864 Found link https://files.pythonhosted.org/packages/80/8f/8bfa3300950a13f7fffa00515f2d83d164cee07eef31e10b4e849388a2f1/scipion-em-tomo-3.1.6.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.6 2026-06-23T11:39:44,865 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/f3/e9/ffce27d9103b12544997e3c307018f040747368497043825f8f2f0f07421/scipion_em_tomo-3.1.6-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,865 Found link https://files.pythonhosted.org/packages/e0/14/edac03039b27c59dbf29b6a7953cd2ec29f4e3ffa358f332f5d661340021/scipion-em-tomo-3.1.7.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.7 2026-06-23T11:39:44,866 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/4f/64/6da2171d34cccd06f45bb32c434fa0c8fb715c778049cda3ff4aa7b77955/scipion_em_tomo-3.1.7-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,867 Found link https://files.pythonhosted.org/packages/8e/54/f7c0776e9516ae2c43bba075f25b62f44cd972286af90e15008778d5d07d/scipion-em-tomo-3.1.8.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.8 2026-06-23T11:39:44,868 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/cd/c3/1329006d7166c9f1d77e42336c867de3eabcf5b1482ca7049a7312925c18/scipion_em_tomo-3.1.8-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,868 Found link https://files.pythonhosted.org/packages/49/e8/860425d7e3f49a135d088eef9fb53406cd6c6fed051c232b09de1b80fa66/scipion-em-tomo-3.1.9.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.9 2026-06-23T11:39:44,869 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/e0/8e/6510653355e001efa66380410c6a3557d65969f86dc084f275b92c0dbf24/scipion_em_tomo-3.1.9-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,869 Found link https://files.pythonhosted.org/packages/41/da/dfdec0d60d53c086b01bb6c891fe5da550f1a11f63d9e2a9905f9ae6fba2/scipion-em-tomo-3.2.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.2.0 2026-06-23T11:39:44,870 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/c7/3a/e3cd1ce4d1b1077626fb6a05940160d9a1dd5482d90b95f9e1f1e803c926/scipion_em_tomo-3.2.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,870 Found link https://files.pythonhosted.org/packages/88/ed/22560e0b3b77369c37d26db0efdeb61797421fe403459c5f8e1612a24113/scipion-em-tomo-3.3.0.tar.gz (from 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https://files.pythonhosted.org/packages/f4/64/1237aed2180c90ebde019c82517330131858da6af2210c5658d79f890f48/scipion-em-tomo-3.4.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.4.1 2026-06-23T11:39:44,874 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/cc/33/5fe83f86542f53108078d770956e8bda4608b5fd1a83c06707d46d19bdb8/scipion_em_tomo-3.4.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,874 Found link https://files.pythonhosted.org/packages/51/99/5f5707ff74b0212081dac4438946d7df7d0244c49fc4e9ea52ffc1e0e11b/scipion-em-tomo-3.5.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.5.1 2026-06-23T11:39:44,875 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/13/7c/c45713ff8c39e0d4fa7fde9099d1410f2a3d61f55f1454f21df573159073/scipion_em_tomo-3.5.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,875 Found link https://files.pythonhosted.org/packages/f2/58/26759f7b22a3c34a70b9a8c426f887793cf6f183d754a35e14d5dd8e9787/scipion-em-tomo-3.6.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.6.0 2026-06-23T11:39:44,876 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/cd/37/bf31b29151100ca6932509d51046481333b56fbf66a9fb6018f098076afd/scipion_em_tomo-3.6.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,877 Found link https://files.pythonhosted.org/packages/11/39/e8be6a170fa04431a23d6b84a0b037240ec168925411e4e9cd1e6de35ea7/scipion-em-tomo-3.6.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.6.1 2026-06-23T11:39:44,877 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/ec/f7/fcc782cfa2b18512865b0fff79dfe869c01c7cf6510df0d507211460124e/scipion_em_tomo-3.6.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,878 Found link https://files.pythonhosted.org/packages/aa/0c/b53570117a260035827387eab332e4d7aae0d781e4ff210baca3e21d3bd6/scipion-em-tomo-3.7.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.7.0 2026-06-23T11:39:44,879 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/5c/02/8ba7933cac14333d9df1cf13885f8893270644cd5bb35cb540f81cfe9a4b/scipion_em_tomo-3.7.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,879 Found link https://files.pythonhosted.org/packages/04/da/f1e2b8393e8491ab100476dc15a0ab149dcadbc2809cc2b5b438bba26ba3/scipion-em-tomo-3.7.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.7.1 2026-06-23T11:39:44,880 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/30/6f/2e09235406700c76c732a554fea5a6f445f0762cdb9f331d8d3c67b021da/scipion_em_tomo-3.7.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,880 Found link https://files.pythonhosted.org/packages/f2/27/a17a83a4c1f8b7cbe03e848bca784ef1baef29156774b85adb3318a6bc44/scipion-em-tomo-3.7.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.7.2 2026-06-23T11:39:44,881 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/58/13/443ef4613f73c64c381c9a08ff6a46d18b8c6bbe8a05c496256ba6f0d87d/scipion_em_tomo-3.7.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,882 Found link https://files.pythonhosted.org/packages/29/6b/d47a5ab218722cde4dddc85a86ff78a335b17a38c1c8d668165d1d671e76/scipion-em-tomo-3.8.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.8.0 2026-06-23T11:39:44,883 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/c0/c1/d9af4a08dcbabd048927b989f54b8b0514b976982c67851a5edc3c4a6be0/scipion_em_tomo-3.8.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,883 Found link https://files.pythonhosted.org/packages/5a/04/f2a09d3c4fb896ace07efc8cb1c8241de65a7c185b7aef37d9cdfe16c4a7/scipion-em-tomo-3.9.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.9.0 2026-06-23T11:39:44,884 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/95/84/288b3afdb371bfe4c3174a39b58c93afe0d45332659fc777496fddfd6741/scipion_em_tomo-3.9.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,884 Found link https://files.pythonhosted.org/packages/0f/ec/266ed7a46bda0c7108aba5c2ad96c2e93d47e4ca4cdd4f51f0e926811136/scipion-em-tomo-3.9.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.9.1 2026-06-23T11:39:44,885 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/7a/c2/31d44262fb95ea9594fa85c91fa942ad8d338d61f127b648f7871b64cf23/scipion_em_tomo-3.9.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,886 Found link https://files.pythonhosted.org/packages/60/8b/c21a18e69d44b6d787516fdc21df98fb5689e009c02c311e5afebafd7908/scipion-em-tomo-3.9.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.9.2 2026-06-23T11:39:44,887 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/50/92/59978fd6aba3ef7870ce4b2375edd55d23a659e763ed1029c3aa79c891b6/scipion_em_tomo-3.9.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) 2026-06-23T11:39:44,887 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/cb/4f/a2de4aaa136fe23ab354cb48bcb737e2a7524fe01802fe65750ae1111c3a/scipion_em_tomo-3.10.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8) 2026-06-23T11:39:44,888 Found link https://files.pythonhosted.org/packages/49/54/22228b763352d92de03bc5b6bc138e5322ff781328aee51b04266c127eff/scipion_em_tomo-3.10.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8), version: 3.10.0 2026-06-23T11:39:44,889 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/0e/32/615a433f3e22df1e6e1f9d83f73e693957a7f962ef7663eb25d563a6f798/scipion_em_tomo-3.11.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8) 2026-06-23T11:39:44,889 Found link https://files.pythonhosted.org/packages/c2/25/445eaf87d65ca0ac47358a9252ccf324aa1458b28cc4b771e7888c5af2e3/scipion_em_tomo-3.11.3.tar.gz (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8), version: 3.11.3 2026-06-23T11:39:44,890 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/5c/63/0543444ee4f3692f8c5f0741134565be82dc5a33bdc7d01c15b750430332/scipion_em_tomo-3.11.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8) 2026-06-23T11:39:44,891 Found link https://files.pythonhosted.org/packages/42/01/a403683bcf21535facb41ea57a05ed467510edca4107faf97894a432eea5/scipion_em_tomo-3.11.4.tar.gz (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8), version: 3.11.4 2026-06-23T11:39:44,892 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/3e/fe/2684137cbe10960e395380a1d8ca1d09f58fd1033890650f6e5cf2209f33/scipion_em_tomo-3.11.5-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8) 2026-06-23T11:39:44,893 Found link https://files.pythonhosted.org/packages/0a/cd/1a8347104b0cbd8630017fef3a6d57b2fc4d165d3fd1650989a361e69794/scipion_em_tomo-3.11.5.tar.gz (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8), version: 3.11.5 2026-06-23T11:39:44,893 Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/9e/0c/c658d8c8c1640c5f171d9d4c53e077888beaf41ce2272139d3e758388ad5/scipion_em_tomo-3.12.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8) 2026-06-23T11:39:44,894 Found link https://files.pythonhosted.org/packages/8e/56/53df7e992b56c236610e781ecbc09db538bea3c688224b5bdad7f0ea8f57/scipion_em_tomo-3.12.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8), version: 3.12.0 2026-06-23T11:39:44,895 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-tomo/ 2026-06-23T11:39:44,895 Getting page https://www.piwheels.org/simple/scipion-em-tomo/ 2026-06-23T11:39:44,897 Found index url https://www.piwheels.org/simple 2026-06-23T11:39:45,082 Fetched page https://www.piwheels.org/simple/scipion-em-tomo/ as text/html 2026-06-23T11:39:45,087 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.11.5-py3-none-any.whl#sha256=1d6b7c9fb642428a2309fdcf8795bf8eb76eb266f5db4c2492ee4809cbda5749 (from https://www.piwheels.org/simple/scipion-em-tomo/) (requires-python:>=3.8) 2026-06-23T11:39:45,088 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.11.4-py3-none-any.whl#sha256=6294874759b9776f0946e0792373601a350c223393bfab0043e60954b50b307d (from https://www.piwheels.org/simple/scipion-em-tomo/) (requires-python:>=3.8) 2026-06-23T11:39:45,089 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.11.3-py3-none-any.whl#sha256=32aa2d896ab04309432bdfd4a5131ea537c5fc4e7ed801aba9a5d66c3b54a700 (from https://www.piwheels.org/simple/scipion-em-tomo/) (requires-python:>=3.8) 2026-06-23T11:39:45,090 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.10.0-py3-none-any.whl#sha256=d7426bea38a94f109569c29238c3c16a8df365ca04099b510f1e699c95a7b403 (from https://www.piwheels.org/simple/scipion-em-tomo/) (requires-python:>=3.8) 2026-06-23T11:39:45,090 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.10-py3-none-any.whl#sha256=ff7c8a2634853720654c729d8868be0ee38e6a06400157ea95521bb4bce439f2 (from https://www.piwheels.org/simple/scipion-em-tomo/) 2026-06-23T11:39:45,090 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.9-py3-none-any.whl#sha256=0e3d4d4680d976ec72c3bd289d10d07b8dd7673d9a5465dfa9a4a418b87fc963 (from https://www.piwheels.org/simple/scipion-em-tomo/) 2026-06-23T11:39:45,091 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.8-py3-none-any.whl#sha256=d692dd0a5b52a2ce3fcff9dd4c1709e41ab5d5bf30aaf7668ee5660e8170205c (from https://www.piwheels.org/simple/scipion-em-tomo/) 2026-06-23T11:39:45,091 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.7-py3-none-any.whl#sha256=fea40e7f7927c46468d6be4159fda7ddaf7ee32fc06d9cd350283bc411d82c35 (from https://www.piwheels.org/simple/scipion-em-tomo/) 2026-06-23T11:39:45,092 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.6-py3-none-any.whl#sha256=8c575df02024489797dfb206c8f3ab8a443df79c36f23e6e4255c65ad80505dd (from https://www.piwheels.org/simple/scipion-em-tomo/) 2026-06-23T11:39:45,092 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.5-py3-none-any.whl#sha256=1d0acf0b97a40541a691c021428641453291095b6c74469987d786cc1b25eb84 (from https://www.piwheels.org/simple/scipion-em-tomo/) 2026-06-23T11:39:45,093 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.4-py3-none-any.whl#sha256=9f0c7111043ce030d7e1d75bacdc774b1e4ef59837aa7f681e824cfdb483d6ff (from https://www.piwheels.org/simple/scipion-em-tomo/) 2026-06-23T11:39:45,094 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.2-py3-none-any.whl#sha256=ab66f4be38893d6016420d476acda5c18d85f739383935906efdb66b2e0bdfab (from https://www.piwheels.org/simple/scipion-em-tomo/) 2026-06-23T11:39:45,094 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.0-py3-none-any.whl#sha256=3eae830f3329dbe994cc8155a307396f86e4643ad956f61010a1fe281a0d3556 (from https://www.piwheels.org/simple/scipion-em-tomo/) 2026-06-23T11:39:45,095 Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-0.0.1-py3-none-any.whl#sha256=ad9ff32c3d6574e3915e471c471427e4e732a3cf21f3a5cb675edb0d2c083607 (from https://www.piwheels.org/simple/scipion-em-tomo/) 2026-06-23T11:39:45,095 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-tomo/ 2026-06-23T11:39:45,096 Skipping link: not a file: https://pypi.org/simple/scipion-em-tomo/ 2026-06-23T11:39:45,121 Given no hashes to check 1 links for project 'scipion-em-tomo': discarding no candidates 2026-06-23T11:39:45,141 Collecting scipion-em-tomo==3.12.0 2026-06-23T11:39:45,143 Created temporary directory: /tmp/pip-unpack-i68flcxa 2026-06-23T11:39:45,371 Downloading scipion_em_tomo-3.12.0.tar.gz (270 kB) 2026-06-23T11:39:45,685 Added scipion-em-tomo==3.12.0 from https://files.pythonhosted.org/packages/8e/56/53df7e992b56c236610e781ecbc09db538bea3c688224b5bdad7f0ea8f57/scipion_em_tomo-3.12.0.tar.gz to build tracker '/tmp/pip-build-tracker-diw0tjym' 2026-06-23T11:39:45,690 Created temporary directory: /tmp/pip-build-env-ar15k4j9 2026-06-23T11:39:45,695 Installing build dependencies: started 2026-06-23T11:39:45,696 Running command pip subprocess to install build dependencies 2026-06-23T11:39:46,831 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-23T11:39:47,269 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-23T11:39:47,292 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-23T11:39:49,072 Collecting setuptools 2026-06-23T11:39:49,073 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-23T11:39:49,096 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-23T11:39:49,330 Collecting wheel 2026-06-23T11:39:49,331 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-06-23T11:39:49,344 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-06-23T11:39:49,555 Collecting packaging>=24.0 2026-06-23T11:39:49,556 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-06-23T11:39:49,571 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-06-23T11:39:49,763 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-23T11:39:49,781 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-23T11:39:49,882 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-23T11:39:49,922 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-23T11:39:49,972 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-23T11:39:50,059 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-23T11:39:52,805 Installing collected packages: setuptools, packaging, wheel 2026-06-23T11:39:56,220 Creating /tmp/pip-build-env-ar15k4j9/overlay/local/bin 2026-06-23T11:39:56,222 changing mode of /tmp/pip-build-env-ar15k4j9/overlay/local/bin/wheel to 755 2026-06-23T11:39:56,243 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-06-23T11:39:56,527 Installing build dependencies: finished with status 'done' 2026-06-23T11:39:56,546 Getting requirements to build wheel: started 2026-06-23T11:39:56,548 Running command Getting requirements to build wheel 2026-06-23T11:39:57,200 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-06-23T11:39:57,201 `flat-layout` detected -- analysing . 2026-06-23T11:39:57,221 discovered packages -- ['tomo', 'tomo.protocols', 'tomo.tests', 'tomo.viewers', 'tomo.templates', 'tomo.convert', 'tomo.protocols.deprecated', 'tomo.viewers.deprecated'] 2026-06-23T11:39:57,227 /tmp/pip-build-env-ar15k4j9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-23T11:39:57,227 !! 2026-06-23T11:39:57,228 ******************************************************************************** 2026-06-23T11:39:57,229 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-23T11:39:57,230 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-23T11:39:57,230 or your builds will no longer be supported. 2026-06-23T11:39:57,231 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-23T11:39:57,231 ******************************************************************************** 2026-06-23T11:39:57,232 !! 2026-06-23T11:39:57,233 corresp(dist, value, root_dir) 2026-06-23T11:39:57,306 /tmp/pip-build-env-ar15k4j9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-23T11:39:57,307 !! 2026-06-23T11:39:57,308 ******************************************************************************** 2026-06-23T11:39:57,308 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-23T11:39:57,309 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-23T11:39:57,310 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-23T11:39:57,311 ******************************************************************************** 2026-06-23T11:39:57,312 !! 2026-06-23T11:39:57,313 dist._finalize_license_expression() 2026-06-23T11:39:57,314 /tmp/pip-build-env-ar15k4j9/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-23T11:39:57,314 !! 2026-06-23T11:39:57,316 ******************************************************************************** 2026-06-23T11:39:57,316 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-23T11:39:57,318 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-23T11:39:57,319 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-23T11:39:57,320 ******************************************************************************** 2026-06-23T11:39:57,321 !! 2026-06-23T11:39:57,321 self._finalize_license_expression() 2026-06-23T11:39:57,322 running egg_info 2026-06-23T11:39:57,326 writing scipion_em_tomo.egg-info/PKG-INFO 2026-06-23T11:39:57,329 writing dependency_links to scipion_em_tomo.egg-info/dependency_links.txt 2026-06-23T11:39:57,331 writing entry points to scipion_em_tomo.egg-info/entry_points.txt 2026-06-23T11:39:57,333 writing requirements to scipion_em_tomo.egg-info/requires.txt 2026-06-23T11:39:57,334 writing top-level names to scipion_em_tomo.egg-info/top_level.txt 2026-06-23T11:39:57,365 reading manifest file 'scipion_em_tomo.egg-info/SOURCES.txt' 2026-06-23T11:39:57,372 reading manifest template 'MANIFEST.in' 2026-06-23T11:39:57,375 adding license file 'LICENSE' 2026-06-23T11:39:57,382 writing manifest file 'scipion_em_tomo.egg-info/SOURCES.txt' 2026-06-23T11:39:57,482 Getting requirements to build wheel: finished with status 'done' 2026-06-23T11:39:57,486 Created temporary directory: /tmp/pip-modern-metadata-631_mz_t 2026-06-23T11:39:57,488 Preparing metadata (pyproject.toml): started 2026-06-23T11:39:57,489 Running command Preparing metadata (pyproject.toml) 2026-06-23T11:39:58,068 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-06-23T11:39:58,068 `flat-layout` detected -- analysing . 2026-06-23T11:39:58,085 discovered packages -- ['tomo', 'tomo.protocols', 'tomo.tests', 'tomo.viewers', 'tomo.templates', 'tomo.convert', 'tomo.protocols.deprecated', 'tomo.viewers.deprecated'] 2026-06-23T11:39:58,091 /tmp/pip-build-env-ar15k4j9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-23T11:39:58,091 !! 2026-06-23T11:39:58,092 ******************************************************************************** 2026-06-23T11:39:58,092 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-23T11:39:58,093 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-23T11:39:58,094 or your builds will no longer be supported. 2026-06-23T11:39:58,095 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-23T11:39:58,095 ******************************************************************************** 2026-06-23T11:39:58,096 !! 2026-06-23T11:39:58,097 corresp(dist, value, root_dir) 2026-06-23T11:39:58,165 /tmp/pip-build-env-ar15k4j9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-23T11:39:58,166 !! 2026-06-23T11:39:58,167 ******************************************************************************** 2026-06-23T11:39:58,168 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-23T11:39:58,169 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-23T11:39:58,170 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-23T11:39:58,171 ******************************************************************************** 2026-06-23T11:39:58,172 !! 2026-06-23T11:39:58,172 dist._finalize_license_expression() 2026-06-23T11:39:58,173 /tmp/pip-build-env-ar15k4j9/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-23T11:39:58,174 !! 2026-06-23T11:39:58,175 ******************************************************************************** 2026-06-23T11:39:58,176 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-23T11:39:58,177 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-23T11:39:58,178 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-23T11:39:58,179 ******************************************************************************** 2026-06-23T11:39:58,180 !! 2026-06-23T11:39:58,181 self._finalize_license_expression() 2026-06-23T11:39:58,181 running dist_info 2026-06-23T11:39:58,188 creating /tmp/pip-modern-metadata-631_mz_t/scipion_em_tomo.egg-info 2026-06-23T11:39:58,189 writing /tmp/pip-modern-metadata-631_mz_t/scipion_em_tomo.egg-info/PKG-INFO 2026-06-23T11:39:58,192 writing dependency_links to /tmp/pip-modern-metadata-631_mz_t/scipion_em_tomo.egg-info/dependency_links.txt 2026-06-23T11:39:58,194 writing entry points to /tmp/pip-modern-metadata-631_mz_t/scipion_em_tomo.egg-info/entry_points.txt 2026-06-23T11:39:58,195 writing requirements to /tmp/pip-modern-metadata-631_mz_t/scipion_em_tomo.egg-info/requires.txt 2026-06-23T11:39:58,196 writing top-level names to /tmp/pip-modern-metadata-631_mz_t/scipion_em_tomo.egg-info/top_level.txt 2026-06-23T11:39:58,198 writing manifest file '/tmp/pip-modern-metadata-631_mz_t/scipion_em_tomo.egg-info/SOURCES.txt' 2026-06-23T11:39:58,225 reading manifest file '/tmp/pip-modern-metadata-631_mz_t/scipion_em_tomo.egg-info/SOURCES.txt' 2026-06-23T11:39:58,226 reading manifest template 'MANIFEST.in' 2026-06-23T11:39:58,230 adding license file 'LICENSE' 2026-06-23T11:39:58,235 writing manifest file '/tmp/pip-modern-metadata-631_mz_t/scipion_em_tomo.egg-info/SOURCES.txt' 2026-06-23T11:39:58,236 creating '/tmp/pip-modern-metadata-631_mz_t/scipion_em_tomo-3.12.0.dist-info' 2026-06-23T11:39:58,361 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-23T11:39:58,366 Source in /tmp/pip-wheel-35mymmum/scipion-em-tomo_ad5a44377b064ef18a1a93829772f03e has version 3.12.0, which satisfies requirement scipion-em-tomo==3.12.0 from https://files.pythonhosted.org/packages/8e/56/53df7e992b56c236610e781ecbc09db538bea3c688224b5bdad7f0ea8f57/scipion_em_tomo-3.12.0.tar.gz 2026-06-23T11:39:58,366 Removed scipion-em-tomo==3.12.0 from https://files.pythonhosted.org/packages/8e/56/53df7e992b56c236610e781ecbc09db538bea3c688224b5bdad7f0ea8f57/scipion_em_tomo-3.12.0.tar.gz from build tracker '/tmp/pip-build-tracker-diw0tjym' 2026-06-23T11:39:58,372 Created temporary directory: /tmp/pip-unpack-190np8_4 2026-06-23T11:39:58,372 Building wheels for collected packages: scipion-em-tomo 2026-06-23T11:39:58,377 Created temporary directory: /tmp/pip-wheel-cs1hrhen 2026-06-23T11:39:58,377 Destination directory: /tmp/pip-wheel-cs1hrhen 2026-06-23T11:39:58,379 Building wheel for scipion-em-tomo (pyproject.toml): started 2026-06-23T11:39:58,380 Running command Building wheel for scipion-em-tomo (pyproject.toml) 2026-06-23T11:39:58,923 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-06-23T11:39:58,923 `flat-layout` detected -- analysing . 2026-06-23T11:39:58,941 discovered packages -- ['tomo', 'tomo.protocols', 'tomo.tests', 'tomo.viewers', 'tomo.templates', 'tomo.convert', 'tomo.protocols.deprecated', 'tomo.viewers.deprecated'] 2026-06-23T11:39:58,946 /tmp/pip-build-env-ar15k4j9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-06-23T11:39:58,947 !! 2026-06-23T11:39:58,948 ******************************************************************************** 2026-06-23T11:39:58,949 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-06-23T11:39:58,950 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-06-23T11:39:58,951 or your builds will no longer be supported. 2026-06-23T11:39:58,952 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-23T11:39:58,952 ******************************************************************************** 2026-06-23T11:39:58,954 !! 2026-06-23T11:39:58,954 corresp(dist, value, root_dir) 2026-06-23T11:39:59,018 /tmp/pip-build-env-ar15k4j9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-23T11:39:59,019 !! 2026-06-23T11:39:59,020 ******************************************************************************** 2026-06-23T11:39:59,020 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-23T11:39:59,022 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-23T11:39:59,028 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-23T11:39:59,030 ******************************************************************************** 2026-06-23T11:39:59,037 !! 2026-06-23T11:39:59,038 dist._finalize_license_expression() 2026-06-23T11:39:59,039 /tmp/pip-build-env-ar15k4j9/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-06-23T11:39:59,040 !! 2026-06-23T11:39:59,040 ******************************************************************************** 2026-06-23T11:39:59,041 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-06-23T11:39:59,042 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-06-23T11:39:59,043 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-06-23T11:39:59,043 ******************************************************************************** 2026-06-23T11:39:59,044 !! 2026-06-23T11:39:59,044 self._finalize_license_expression() 2026-06-23T11:39:59,045 running bdist_wheel 2026-06-23T11:39:59,049 running build 2026-06-23T11:39:59,049 running build_py 2026-06-23T11:39:59,055 creating build/lib/tomo 2026-06-23T11:39:59,057 copying tomo/utils.py -> build/lib/tomo 2026-06-23T11:39:59,060 copying tomo/wizards.py -> build/lib/tomo 2026-06-23T11:39:59,062 copying tomo/__init__.py -> build/lib/tomo 2026-06-23T11:39:59,064 copying tomo/objects.py -> build/lib/tomo 2026-06-23T11:39:59,070 copying tomo/constants.py -> build/lib/tomo 2026-06-23T11:39:59,073 creating build/lib/tomo/protocols 2026-06-23T11:39:59,074 copying tomo/protocols/protocol_ts_import.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,078 copying tomo/protocols/protocol_base.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,081 copying tomo/protocols/protocol_extract_coordinates.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,083 copying tomo/protocols/protocol_mask_coordinates.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,086 copying tomo/protocols/protocol_invert_tilt_angles.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,088 copying tomo/protocols/protocol_ts_estimate_ctf.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,090 copying tomo/protocols/protocol_tomo_apply_tomomask.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,093 copying tomo/protocols/protocol_mesh_from_segmentation.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,095 copying tomo/protocols/protocol_import_tomomasks.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,098 copying tomo/protocols/protocol_import_ctf.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,100 copying tomo/protocols/protocol_import_coordinates_from_scipion.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,102 copying tomo/protocols/protocol_tomo_to_mics.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,104 copying tomo/protocols/protocol_ts_consensus_alignment.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,107 copying tomo/protocols/protocol_compose_TS.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,110 copying tomo/protocols/protocol_assign_excluded_views.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,112 copying tomo/protocols/protocol_ts_import_coordinates.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,115 copying tomo/protocols/protocol_import_coordinates.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,117 copying tomo/protocols/protocol_misalignTS.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,120 copying tomo/protocols/protocol_ts_base.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,122 copying tomo/protocols/protocol_correct_tilt_offset.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,124 copying tomo/protocols/protocol_ts_convert_coords3d.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,127 copying tomo/protocols/protocol_import_tomograms.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,129 copying tomo/protocols/protocol_ts_correct_motion.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,132 copying tomo/protocols/protocol_assignTransformationTS.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,134 copying tomo/protocols/__init__.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,136 copying tomo/protocols/protocol_particles_to_subtomograms.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,138 copying tomo/protocols/protocol_project_coordinates.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,140 copying tomo/protocols/protocol_import_subtomograms.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,143 copying tomo/protocols/protocol_ts_exclude_views_filter.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,145 copying tomo/protocols/protocol_export_coords.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,147 copying tomo/protocols/protocol_split_evenodd_subtomos.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,149 copying tomo/protocols/protocol_ts_from_tomograms.py -> build/lib/tomo/protocols 2026-06-23T11:39:59,152 creating build/lib/tomo/tests 2026-06-23T11:39:59,153 copying tomo/tests/test_mesh_from_segmentation.py -> build/lib/tomo/tests 2026-06-23T11:39:59,155 copying tomo/tests/test_objects.py -> build/lib/tomo/tests 2026-06-23T11:39:59,157 copying tomo/tests/test_assign_excluded_views.py -> build/lib/tomo/tests 2026-06-23T11:39:59,160 copying tomo/tests/test_import.py -> build/lib/tomo/tests 2026-06-23T11:39:59,163 copying tomo/tests/test_base_centralized_layer.py -> build/lib/tomo/tests 2026-06-23T11:39:59,167 copying tomo/tests/test_import_with_pattern.py -> build/lib/tomo/tests 2026-06-23T11:39:59,170 copying tomo/tests/test_tomo_base.py -> build/lib/tomo/tests 2026-06-23T11:39:59,173 copying tomo/tests/test_ts_from_tomos.py -> build/lib/tomo/tests 2026-06-23T11:39:59,175 copying tomo/tests/test_export.py -> build/lib/tomo/tests 2026-06-23T11:39:59,177 copying tomo/tests/tests_filter_views.py -> build/lib/tomo/tests 2026-06-23T11:39:59,180 copying tomo/tests/test_compose_TS.py -> build/lib/tomo/tests 2026-06-23T11:39:59,182 copying tomo/tests/tests_tomo_apply_tomomask.py -> build/lib/tomo/tests 2026-06-23T11:39:59,185 copying tomo/tests/__init__.py -> build/lib/tomo/tests 2026-06-23T11:39:59,187 copying tomo/tests/test_correct_tilt_offset.py -> build/lib/tomo/tests 2026-06-23T11:39:59,189 copying tomo/tests/test_ts_import_disambiguation.py -> build/lib/tomo/tests 2026-06-23T11:39:59,192 copying tomo/tests/tests_ts_invert_tilt_angles.py -> build/lib/tomo/tests 2026-06-23T11:39:59,194 copying tomo/tests/test_transformations.py -> build/lib/tomo/tests 2026-06-23T11:39:59,196 copying tomo/tests/test_join_sets.py -> build/lib/tomo/tests 2026-06-23T11:39:59,199 copying tomo/tests/test_assign_transformation_ts.py -> build/lib/tomo/tests 2026-06-23T11:39:59,202 creating build/lib/tomo/viewers 2026-06-23T11:39:59,203 copying tomo/viewers/views_tkinter_tree.py -> build/lib/tomo/viewers 2026-06-23T11:39:59,207 copying tomo/viewers/views.py -> build/lib/tomo/viewers 2026-06-23T11:39:59,209 copying tomo/viewers/__init__.py -> build/lib/tomo/viewers 2026-06-23T11:39:59,211 copying tomo/viewers/viewer_split_evenodd.py -> build/lib/tomo/viewers 2026-06-23T11:39:59,213 copying tomo/viewers/viewers_data.py -> build/lib/tomo/viewers 2026-06-23T11:39:59,216 creating build/lib/tomo/convert 2026-06-23T11:39:59,217 copying tomo/convert/mdoc.py -> build/lib/tomo/convert 2026-06-23T11:39:59,220 copying tomo/convert/__init__.py -> build/lib/tomo/convert 2026-06-23T11:39:59,222 copying tomo/convert/convert.py -> build/lib/tomo/convert 2026-06-23T11:39:59,225 creating build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,226 copying tomo/protocols/deprecated/protocol_rotate_astigmatism.py -> build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,229 copying tomo/protocols/deprecated/protocol_ctf_validate.py -> build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,231 copying tomo/protocols/deprecated/protocol_assign_tomo2subtomo.py -> build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,234 copying tomo/protocols/deprecated/protocol_consensus_classes_subtomo.py -> build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,236 copying tomo/protocols/deprecated/protocol_ctf_consensus.py -> build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,239 copying tomo/protocols/deprecated/protocol_assign_tomo2tomoMask.py -> build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,241 copying tomo/protocols/deprecated/__init__.py -> build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,242 copying tomo/protocols/deprecated/protocol_landmark_to_2d.py -> build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,244 copying tomo/protocols/deprecated/protocol_alignment_assign.py -> build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,246 copying tomo/protocols/deprecated/protocol_fit_ellipsoid.py -> build/lib/tomo/protocols/deprecated 2026-06-23T11:39:59,249 creating build/lib/tomo/viewers/deprecated 2026-06-23T11:39:59,250 copying tomo/viewers/deprecated/viewer_ctf_tomo_consensus.py -> build/lib/tomo/viewers/deprecated 2026-06-23T11:39:59,252 copying tomo/viewers/deprecated/__init__.py -> build/lib/tomo/viewers/deprecated 2026-06-23T11:39:59,253 running egg_info 2026-06-23T11:39:59,263 writing scipion_em_tomo.egg-info/PKG-INFO 2026-06-23T11:39:59,266 writing dependency_links to scipion_em_tomo.egg-info/dependency_links.txt 2026-06-23T11:39:59,267 writing entry points to scipion_em_tomo.egg-info/entry_points.txt 2026-06-23T11:39:59,268 writing requirements to scipion_em_tomo.egg-info/requires.txt 2026-06-23T11:39:59,269 writing top-level names to scipion_em_tomo.egg-info/top_level.txt 2026-06-23T11:39:59,287 reading manifest file 'scipion_em_tomo.egg-info/SOURCES.txt' 2026-06-23T11:39:59,293 reading manifest template 'MANIFEST.in' 2026-06-23T11:39:59,296 adding license file 'LICENSE' 2026-06-23T11:39:59,302 writing manifest file 'scipion_em_tomo.egg-info/SOURCES.txt' 2026-06-23T11:39:59,310 copying tomo/icon.png -> build/lib/tomo 2026-06-23T11:39:59,313 copying tomo/protocols.conf -> build/lib/tomo 2026-06-23T11:39:59,315 creating build/lib/tomo/templates 2026-06-23T11:39:59,316 copying tomo/templates/tutorial_STA_CellEnv_Chlamy.json.template -> build/lib/tomo/templates 2026-06-23T11:39:59,319 copying tomo/templates/tutorial_STA_apoferritin.json.template -> build/lib/tomo/templates 2026-06-23T11:39:59,322 copying tomo/templates/202601_Streaming_Chlamy.json.template -> build/lib/tomo/templates 2026-06-23T11:39:59,325 copying tomo/templates/202601_F_Streaming_Chlamy.json.template -> build/lib/tomo/templates 2026-06-23T11:39:59,327 copying tomo/templates/202601_F_Streaming_HIV.json.template -> build/lib/tomo/templates 2026-06-23T11:39:59,330 copying tomo/templates/tutorial_STA_HIV.json.template -> build/lib/tomo/templates 2026-06-23T11:39:59,333 copying tomo/templates/tutorial_nonOrientedPicking_ribosome.json.template -> build/lib/tomo/templates 2026-06-23T11:39:59,335 copying tomo/templates/202601_Streaming_HIV.json.template -> build/lib/tomo/templates 2026-06-23T11:39:59,354 installing to build/bdist.linux-armv7l/wheel 2026-06-23T11:39:59,355 running install 2026-06-23T11:39:59,378 running install_lib 2026-06-23T11:39:59,384 creating build/bdist.linux-armv7l/wheel 2026-06-23T11:39:59,386 creating build/bdist.linux-armv7l/wheel/tomo 2026-06-23T11:39:59,387 copying build/lib/tomo/utils.py -> build/bdist.linux-armv7l/wheel/./tomo 2026-06-23T11:39:59,391 creating build/bdist.linux-armv7l/wheel/tomo/protocols 2026-06-23T11:39:59,392 copying build/lib/tomo/protocols/protocol_ts_import.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,395 copying build/lib/tomo/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,398 copying build/lib/tomo/protocols/protocol_extract_coordinates.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,401 copying build/lib/tomo/protocols/protocol_mask_coordinates.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,404 copying build/lib/tomo/protocols/protocol_invert_tilt_angles.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,406 copying build/lib/tomo/protocols/protocol_ts_estimate_ctf.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,409 copying build/lib/tomo/protocols/protocol_tomo_apply_tomomask.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,412 copying build/lib/tomo/protocols/protocol_mesh_from_segmentation.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,414 copying build/lib/tomo/protocols/protocol_import_tomomasks.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,417 copying build/lib/tomo/protocols/protocol_import_ctf.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,419 copying build/lib/tomo/protocols/protocol_import_coordinates_from_scipion.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,422 copying build/lib/tomo/protocols/protocol_tomo_to_mics.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,425 copying build/lib/tomo/protocols/protocol_ts_consensus_alignment.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,428 copying build/lib/tomo/protocols/protocol_compose_TS.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,431 creating build/bdist.linux-armv7l/wheel/tomo/protocols/deprecated 2026-06-23T11:39:59,432 copying build/lib/tomo/protocols/deprecated/protocol_rotate_astigmatism.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated 2026-06-23T11:39:59,435 copying build/lib/tomo/protocols/deprecated/protocol_ctf_validate.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated 2026-06-23T11:39:59,438 copying build/lib/tomo/protocols/deprecated/protocol_assign_tomo2subtomo.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated 2026-06-23T11:39:59,440 copying build/lib/tomo/protocols/deprecated/protocol_consensus_classes_subtomo.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated 2026-06-23T11:39:59,443 copying build/lib/tomo/protocols/deprecated/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated 2026-06-23T11:39:59,446 copying build/lib/tomo/protocols/deprecated/protocol_assign_tomo2tomoMask.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated 2026-06-23T11:39:59,448 copying build/lib/tomo/protocols/deprecated/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated 2026-06-23T11:39:59,450 copying build/lib/tomo/protocols/deprecated/protocol_landmark_to_2d.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated 2026-06-23T11:39:59,453 copying build/lib/tomo/protocols/deprecated/protocol_alignment_assign.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated 2026-06-23T11:39:59,455 copying build/lib/tomo/protocols/deprecated/protocol_fit_ellipsoid.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated 2026-06-23T11:39:59,458 copying build/lib/tomo/protocols/protocol_assign_excluded_views.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,461 copying build/lib/tomo/protocols/protocol_ts_import_coordinates.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,464 copying build/lib/tomo/protocols/protocol_import_coordinates.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,467 copying build/lib/tomo/protocols/protocol_misalignTS.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,470 copying build/lib/tomo/protocols/protocol_ts_base.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,472 copying build/lib/tomo/protocols/protocol_correct_tilt_offset.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,475 copying build/lib/tomo/protocols/protocol_ts_convert_coords3d.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,477 copying build/lib/tomo/protocols/protocol_import_tomograms.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,479 copying build/lib/tomo/protocols/protocol_ts_correct_motion.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,482 copying build/lib/tomo/protocols/protocol_assignTransformationTS.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,485 copying build/lib/tomo/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,486 copying build/lib/tomo/protocols/protocol_particles_to_subtomograms.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,488 copying build/lib/tomo/protocols/protocol_project_coordinates.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,490 copying build/lib/tomo/protocols/protocol_import_subtomograms.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,492 copying build/lib/tomo/protocols/protocol_ts_exclude_views_filter.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,495 copying build/lib/tomo/protocols/protocol_export_coords.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,498 copying build/lib/tomo/protocols/protocol_split_evenodd_subtomos.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,499 copying build/lib/tomo/protocols/protocol_ts_from_tomograms.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols 2026-06-23T11:39:59,502 creating build/bdist.linux-armv7l/wheel/tomo/tests 2026-06-23T11:39:59,503 copying build/lib/tomo/tests/test_mesh_from_segmentation.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,505 copying build/lib/tomo/tests/test_objects.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,507 copying build/lib/tomo/tests/test_assign_excluded_views.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,510 copying build/lib/tomo/tests/test_import.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,512 copying build/lib/tomo/tests/test_base_centralized_layer.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,516 copying build/lib/tomo/tests/test_import_with_pattern.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,519 copying build/lib/tomo/tests/test_tomo_base.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,522 copying build/lib/tomo/tests/test_ts_from_tomos.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,524 copying build/lib/tomo/tests/test_export.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,526 copying build/lib/tomo/tests/tests_filter_views.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,529 copying build/lib/tomo/tests/test_compose_TS.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,531 copying build/lib/tomo/tests/tests_tomo_apply_tomomask.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,533 copying build/lib/tomo/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,536 copying build/lib/tomo/tests/test_correct_tilt_offset.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,538 copying build/lib/tomo/tests/test_ts_import_disambiguation.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,540 copying build/lib/tomo/tests/tests_ts_invert_tilt_angles.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,542 copying build/lib/tomo/tests/test_transformations.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,544 copying build/lib/tomo/tests/test_join_sets.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,547 copying build/lib/tomo/tests/test_assign_transformation_ts.py -> build/bdist.linux-armv7l/wheel/./tomo/tests 2026-06-23T11:39:59,549 copying build/lib/tomo/protocols.conf -> build/bdist.linux-armv7l/wheel/./tomo 2026-06-23T11:39:59,551 copying build/lib/tomo/wizards.py -> build/bdist.linux-armv7l/wheel/./tomo 2026-06-23T11:39:59,553 creating build/bdist.linux-armv7l/wheel/tomo/viewers 2026-06-23T11:39:59,555 copying build/lib/tomo/viewers/views_tkinter_tree.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers 2026-06-23T11:39:59,559 creating build/bdist.linux-armv7l/wheel/tomo/viewers/deprecated 2026-06-23T11:39:59,560 copying build/lib/tomo/viewers/deprecated/viewer_ctf_tomo_consensus.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers/deprecated 2026-06-23T11:39:59,562 copying build/lib/tomo/viewers/deprecated/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers/deprecated 2026-06-23T11:39:59,564 copying build/lib/tomo/viewers/views.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers 2026-06-23T11:39:59,566 copying build/lib/tomo/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers 2026-06-23T11:39:59,568 copying build/lib/tomo/viewers/viewer_split_evenodd.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers 2026-06-23T11:39:59,570 copying build/lib/tomo/viewers/viewers_data.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers 2026-06-23T11:39:59,572 copying build/lib/tomo/icon.png -> build/bdist.linux-armv7l/wheel/./tomo 2026-06-23T11:39:59,574 copying build/lib/tomo/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo 2026-06-23T11:39:59,576 copying build/lib/tomo/objects.py -> build/bdist.linux-armv7l/wheel/./tomo 2026-06-23T11:39:59,580 creating build/bdist.linux-armv7l/wheel/tomo/templates 2026-06-23T11:39:59,581 copying build/lib/tomo/templates/tutorial_STA_CellEnv_Chlamy.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates 2026-06-23T11:39:59,584 copying build/lib/tomo/templates/tutorial_STA_apoferritin.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates 2026-06-23T11:39:59,586 copying build/lib/tomo/templates/202601_Streaming_Chlamy.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates 2026-06-23T11:39:59,588 copying build/lib/tomo/templates/202601_F_Streaming_Chlamy.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates 2026-06-23T11:39:59,590 copying build/lib/tomo/templates/202601_F_Streaming_HIV.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates 2026-06-23T11:39:59,593 copying build/lib/tomo/templates/tutorial_STA_HIV.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates 2026-06-23T11:39:59,595 copying build/lib/tomo/templates/tutorial_nonOrientedPicking_ribosome.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates 2026-06-23T11:39:59,597 copying build/lib/tomo/templates/202601_Streaming_HIV.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates 2026-06-23T11:39:59,600 creating build/bdist.linux-armv7l/wheel/tomo/convert 2026-06-23T11:39:59,601 copying build/lib/tomo/convert/mdoc.py -> build/bdist.linux-armv7l/wheel/./tomo/convert 2026-06-23T11:39:59,604 copying build/lib/tomo/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/convert 2026-06-23T11:39:59,606 copying build/lib/tomo/convert/convert.py -> build/bdist.linux-armv7l/wheel/./tomo/convert 2026-06-23T11:39:59,608 copying build/lib/tomo/constants.py -> build/bdist.linux-armv7l/wheel/./tomo 2026-06-23T11:39:59,610 running install_egg_info 2026-06-23T11:39:59,615 Copying scipion_em_tomo.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_tomo-3.12.0-py3.11.egg-info 2026-06-23T11:39:59,626 running install_scripts 2026-06-23T11:39:59,639 creating build/bdist.linux-armv7l/wheel/scipion_em_tomo-3.12.0.dist-info/WHEEL 2026-06-23T11:39:59,641 creating '/tmp/pip-wheel-cs1hrhen/.tmp-6v8wu7qf/scipion_em_tomo-3.12.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-23T11:39:59,649 adding 'scipion_em_tomo-3.12.0.dist-info/licenses/LICENSE' 2026-06-23T11:39:59,652 adding 'tomo/__init__.py' 2026-06-23T11:39:59,654 adding 'tomo/constants.py' 2026-06-23T11:39:59,656 adding 'tomo/icon.png' 2026-06-23T11:39:59,671 adding 'tomo/objects.py' 2026-06-23T11:39:59,673 adding 'tomo/protocols.conf' 2026-06-23T11:39:59,676 adding 'tomo/utils.py' 2026-06-23T11:39:59,678 adding 'tomo/wizards.py' 2026-06-23T11:39:59,680 adding 'tomo/convert/__init__.py' 2026-06-23T11:39:59,682 adding 'tomo/convert/convert.py' 2026-06-23T11:39:59,685 adding 'tomo/convert/mdoc.py' 2026-06-23T11:39:59,687 adding 'tomo/protocols/__init__.py' 2026-06-23T11:39:59,689 adding 'tomo/protocols/protocol_assignTransformationTS.py' 2026-06-23T11:39:59,691 adding 'tomo/protocols/protocol_assign_excluded_views.py' 2026-06-23T11:39:59,694 adding 'tomo/protocols/protocol_base.py' 2026-06-23T11:39:59,697 adding 'tomo/protocols/protocol_compose_TS.py' 2026-06-23T11:39:59,699 adding 'tomo/protocols/protocol_correct_tilt_offset.py' 2026-06-23T11:39:59,701 adding 'tomo/protocols/protocol_export_coords.py' 2026-06-23T11:39:59,703 adding 'tomo/protocols/protocol_extract_coordinates.py' 2026-06-23T11:39:59,705 adding 'tomo/protocols/protocol_import_coordinates.py' 2026-06-23T11:39:59,706 adding 'tomo/protocols/protocol_import_coordinates_from_scipion.py' 2026-06-23T11:39:59,708 adding 'tomo/protocols/protocol_import_ctf.py' 2026-06-23T11:39:59,710 adding 'tomo/protocols/protocol_import_subtomograms.py' 2026-06-23T11:39:59,712 adding 'tomo/protocols/protocol_import_tomograms.py' 2026-06-23T11:39:59,714 adding 'tomo/protocols/protocol_import_tomomasks.py' 2026-06-23T11:39:59,716 adding 'tomo/protocols/protocol_invert_tilt_angles.py' 2026-06-23T11:39:59,717 adding 'tomo/protocols/protocol_mask_coordinates.py' 2026-06-23T11:39:59,719 adding 'tomo/protocols/protocol_mesh_from_segmentation.py' 2026-06-23T11:39:59,722 adding 'tomo/protocols/protocol_misalignTS.py' 2026-06-23T11:39:59,723 adding 'tomo/protocols/protocol_particles_to_subtomograms.py' 2026-06-23T11:39:59,725 adding 'tomo/protocols/protocol_project_coordinates.py' 2026-06-23T11:39:59,726 adding 'tomo/protocols/protocol_split_evenodd_subtomos.py' 2026-06-23T11:39:59,728 adding 'tomo/protocols/protocol_tomo_apply_tomomask.py' 2026-06-23T11:39:59,730 adding 'tomo/protocols/protocol_tomo_to_mics.py' 2026-06-23T11:39:59,732 adding 'tomo/protocols/protocol_ts_base.py' 2026-06-23T11:39:59,735 adding 'tomo/protocols/protocol_ts_consensus_alignment.py' 2026-06-23T11:39:59,736 adding 'tomo/protocols/protocol_ts_convert_coords3d.py' 2026-06-23T11:39:59,739 adding 'tomo/protocols/protocol_ts_correct_motion.py' 2026-06-23T11:39:59,741 adding 'tomo/protocols/protocol_ts_estimate_ctf.py' 2026-06-23T11:39:59,746 adding 'tomo/protocols/protocol_ts_exclude_views_filter.py' 2026-06-23T11:39:59,748 adding 'tomo/protocols/protocol_ts_from_tomograms.py' 2026-06-23T11:39:59,755 adding 'tomo/protocols/protocol_ts_import.py' 2026-06-23T11:39:59,757 adding 'tomo/protocols/protocol_ts_import_coordinates.py' 2026-06-23T11:39:59,758 adding 'tomo/protocols/deprecated/__init__.py' 2026-06-23T11:39:59,760 adding 'tomo/protocols/deprecated/protocol_alignment_assign.py' 2026-06-23T11:39:59,761 adding 'tomo/protocols/deprecated/protocol_assign_tomo2subtomo.py' 2026-06-23T11:39:59,763 adding 'tomo/protocols/deprecated/protocol_assign_tomo2tomoMask.py' 2026-06-23T11:39:59,765 adding 'tomo/protocols/deprecated/protocol_consensus_classes_subtomo.py' 2026-06-23T11:39:59,767 adding 'tomo/protocols/deprecated/protocol_ctf_consensus.py' 2026-06-23T11:39:59,769 adding 'tomo/protocols/deprecated/protocol_ctf_validate.py' 2026-06-23T11:39:59,771 adding 'tomo/protocols/deprecated/protocol_fit_ellipsoid.py' 2026-06-23T11:39:59,773 adding 'tomo/protocols/deprecated/protocol_landmark_to_2d.py' 2026-06-23T11:39:59,775 adding 'tomo/protocols/deprecated/protocol_rotate_astigmatism.py' 2026-06-23T11:39:59,777 adding 'tomo/templates/202601_F_Streaming_Chlamy.json.template' 2026-06-23T11:39:59,779 adding 'tomo/templates/202601_F_Streaming_HIV.json.template' 2026-06-23T11:39:59,781 adding 'tomo/templates/202601_Streaming_Chlamy.json.template' 2026-06-23T11:39:59,782 adding 'tomo/templates/202601_Streaming_HIV.json.template' 2026-06-23T11:39:59,785 adding 'tomo/templates/tutorial_STA_CellEnv_Chlamy.json.template' 2026-06-23T11:39:59,787 adding 'tomo/templates/tutorial_STA_HIV.json.template' 2026-06-23T11:39:59,790 adding 'tomo/templates/tutorial_STA_apoferritin.json.template' 2026-06-23T11:39:59,792 adding 'tomo/templates/tutorial_nonOrientedPicking_ribosome.json.template' 2026-06-23T11:39:59,796 adding 'tomo/tests/__init__.py' 2026-06-23T11:39:59,798 adding 'tomo/tests/test_assign_excluded_views.py' 2026-06-23T11:39:59,800 adding 'tomo/tests/test_assign_transformation_ts.py' 2026-06-23T11:39:59,807 adding 'tomo/tests/test_base_centralized_layer.py' 2026-06-23T11:39:59,809 adding 'tomo/tests/test_compose_TS.py' 2026-06-23T11:39:59,810 adding 'tomo/tests/test_correct_tilt_offset.py' 2026-06-23T11:39:59,811 adding 'tomo/tests/test_export.py' 2026-06-23T11:39:59,815 adding 'tomo/tests/test_import.py' 2026-06-23T11:39:59,819 adding 'tomo/tests/test_import_with_pattern.py' 2026-06-23T11:39:59,821 adding 'tomo/tests/test_join_sets.py' 2026-06-23T11:39:59,822 adding 'tomo/tests/test_mesh_from_segmentation.py' 2026-06-23T11:39:59,824 adding 'tomo/tests/test_objects.py' 2026-06-23T11:39:59,828 adding 'tomo/tests/test_tomo_base.py' 2026-06-23T11:39:59,830 adding 'tomo/tests/test_transformations.py' 2026-06-23T11:39:59,831 adding 'tomo/tests/test_ts_from_tomos.py' 2026-06-23T11:39:59,833 adding 'tomo/tests/test_ts_import_disambiguation.py' 2026-06-23T11:39:59,836 adding 'tomo/tests/tests_filter_views.py' 2026-06-23T11:39:59,838 adding 'tomo/tests/tests_tomo_apply_tomomask.py' 2026-06-23T11:39:59,840 adding 'tomo/tests/tests_ts_invert_tilt_angles.py' 2026-06-23T11:39:59,842 adding 'tomo/viewers/__init__.py' 2026-06-23T11:39:59,843 adding 'tomo/viewers/viewer_split_evenodd.py' 2026-06-23T11:39:59,845 adding 'tomo/viewers/viewers_data.py' 2026-06-23T11:39:59,846 adding 'tomo/viewers/views.py' 2026-06-23T11:39:59,856 adding 'tomo/viewers/views_tkinter_tree.py' 2026-06-23T11:39:59,858 adding 'tomo/viewers/deprecated/__init__.py' 2026-06-23T11:39:59,859 adding 'tomo/viewers/deprecated/viewer_ctf_tomo_consensus.py' 2026-06-23T11:39:59,860 adding 'scipion_em_tomo-3.12.0.dist-info/METADATA' 2026-06-23T11:39:59,861 adding 'scipion_em_tomo-3.12.0.dist-info/WHEEL' 2026-06-23T11:39:59,862 adding 'scipion_em_tomo-3.12.0.dist-info/entry_points.txt' 2026-06-23T11:39:59,863 adding 'scipion_em_tomo-3.12.0.dist-info/top_level.txt' 2026-06-23T11:39:59,865 adding 'scipion_em_tomo-3.12.0.dist-info/RECORD' 2026-06-23T11:39:59,873 removing build/bdist.linux-armv7l/wheel 2026-06-23T11:40:00,013 Building wheel for scipion-em-tomo (pyproject.toml): finished with status 'done' 2026-06-23T11:40:00,027 Created wheel for scipion-em-tomo: filename=scipion_em_tomo-3.12.0-py3-none-any.whl size=351318 sha256=8db656ddb299c860f7efcd6699048ec7ff9abd0899b30af50150b3cfcaa1cb1a 2026-06-23T11:40:00,029 Stored in directory: /tmp/pip-ephem-wheel-cache-41xe7rt4/wheels/a0/31/e5/28b4ba7db4594b1dd4c70428a52540cbb787e1155005ff31de 2026-06-23T11:40:00,043 Successfully built scipion-em-tomo 2026-06-23T11:40:00,055 Removed build tracker: '/tmp/pip-build-tracker-diw0tjym'