2026-06-26T14:06:38,833 Created temporary directory: /tmp/pip-ephem-wheel-cache-dmeysw6l
2026-06-26T14:06:38,835 Created temporary directory: /tmp/pip-build-tracker-0m1li6x3
2026-06-26T14:06:38,836 Initialized build tracking at /tmp/pip-build-tracker-0m1li6x3
2026-06-26T14:06:38,836 Created build tracker: /tmp/pip-build-tracker-0m1li6x3
2026-06-26T14:06:38,837 Entered build tracker: /tmp/pip-build-tracker-0m1li6x3
2026-06-26T14:06:38,838 Created temporary directory: /tmp/pip-wheel-womkzios
2026-06-26T14:06:38,841 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-26T14:06:38,843 Created temporary directory: /tmp/pip-ephem-wheel-cache-ixzndvql
2026-06-26T14:06:38,867 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-26T14:06:38,870 2 location(s) to search for versions of oncoref:
2026-06-26T14:06:38,870 * https://pypi.org/simple/oncoref/
2026-06-26T14:06:38,870 * https://www.piwheels.org/simple/oncoref/
2026-06-26T14:06:38,871 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-06-26T14:06:38,872 Getting page https://pypi.org/simple/oncoref/
2026-06-26T14:06:38,874 Found index url https://pypi.org/simple
2026-06-26T14:06:39,129 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-06-26T14:06:39,136   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,137   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-06-26T14:06:39,138   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,139   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-06-26T14:06:39,139   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,140   Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0
2026-06-26T14:06:39,141   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,142   Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1
2026-06-26T14:06:39,143   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,144   Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2
2026-06-26T14:06:39,145   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,146   Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3
2026-06-26T14:06:39,146   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,147   Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4
2026-06-26T14:06:39,148   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,148   Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5
2026-06-26T14:06:39,149   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,150   Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6
2026-06-26T14:06:39,151   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,152   Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7
2026-06-26T14:06:39,152   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,153   Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8
2026-06-26T14:06:39,154   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,155   Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9
2026-06-26T14:06:39,155   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,156   Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10
2026-06-26T14:06:39,157   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,158   Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11
2026-06-26T14:06:39,158   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,159   Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12
2026-06-26T14:06:39,160   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,161   Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13
2026-06-26T14:06:39,161 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-06-26T14:06:39,162 Getting page https://www.piwheels.org/simple/oncoref/
2026-06-26T14:06:39,164 Found index url https://www.piwheels.org/simple
2026-06-26T14:06:39,467 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
2026-06-26T14:06:39,473   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.12-py3-none-any.whl#sha256=2a0e59477b8939fc63d4a78f31b0b793fb2f49ea2aab861d853fa8479ccf9608 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,474   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.11-py3-none-any.whl#sha256=602ac0deb73739e65dfb65105b23357a94a67eb9e1faac0880bff5203ed4a818 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,474   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.10-py3-none-any.whl#sha256=3e789fd35641073e8afc8885dcef12d74a2323c2e0c8dad7b5e369392675e83a (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,475   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.9-py3-none-any.whl#sha256=2415de57054126a885d64b626bbb12657ce55d0791a686b7aba85fd8b784d399 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,476   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.8-py3-none-any.whl#sha256=f1b7351039ce534abc9d36a03b53fd9479b1629b4a6fd8698bc500162f1cd362 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,476   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.7-py3-none-any.whl#sha256=84f80af8afa25d02579e67983b74fd2e515df1ce6d0cb602ecb6808e994f8f63 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,477   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.6-py3-none-any.whl#sha256=460f281fc846e410a5992e3a87193febdfac8bf81f3e5497a5e5d72ae58176bf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,477   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,478   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,479   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,479   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,479   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,480   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,481   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,481   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T14:06:39,482 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-06-26T14:06:39,483 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-06-26T14:06:39,505 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-06-26T14:06:39,524 Collecting oncoref==1.8.13
2026-06-26T14:06:39,527   Created temporary directory: /tmp/pip-unpack-x2ffozaa
2026-06-26T14:06:39,867   Downloading oncoref-1.8.13.tar.gz (1.7 MB)
2026-06-26T14:06:40,879   Added oncoref==1.8.13 from https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz to build tracker '/tmp/pip-build-tracker-0m1li6x3'
2026-06-26T14:06:40,886   Created temporary directory: /tmp/pip-build-env-vm1f9yt4
2026-06-26T14:06:40,891   Installing build dependencies: started
2026-06-26T14:06:40,892   Running command pip subprocess to install build dependencies
2026-06-26T14:06:42,087   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-06-26T14:06:42,556   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-26T14:06:42,581   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-26T14:06:44,622   Collecting setuptools>=61.0
2026-06-26T14:06:44,624     Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-06-26T14:06:44,647     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-06-26T14:06:44,882   Collecting wheel
2026-06-26T14:06:44,883     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-06-26T14:06:44,902     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-06-26T14:06:45,104   Collecting packaging>=24.0
2026-06-26T14:06:45,104     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-06-26T14:06:45,120     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-06-26T14:06:45,314   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-26T14:06:45,341   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-26T14:06:45,439   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-26T14:06:45,484   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-26T14:06:45,528   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-26T14:06:45,631   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-26T14:06:48,397   Installing collected packages: setuptools, packaging, wheel
2026-06-26T14:06:52,249     Creating /tmp/pip-build-env-vm1f9yt4/overlay/local/bin
2026-06-26T14:06:52,252     changing mode of /tmp/pip-build-env-vm1f9yt4/overlay/local/bin/wheel to 755
2026-06-26T14:06:52,273   Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0
2026-06-26T14:06:52,563   Installing build dependencies: finished with status 'done'
2026-06-26T14:06:52,570   Getting requirements to build wheel: started
2026-06-26T14:06:52,572   Running command Getting requirements to build wheel
2026-06-26T14:06:53,335   running egg_info
2026-06-26T14:06:53,341   writing oncoref.egg-info/PKG-INFO
2026-06-26T14:06:53,346   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-26T14:06:53,348   writing entry points to oncoref.egg-info/entry_points.txt
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2026-06-26T14:06:53,353   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-26T14:06:53,392   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-26T14:06:53,401   reading manifest template 'MANIFEST.in'
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2026-06-26T14:06:53,411   adding license file 'LICENSE'
2026-06-26T14:06:53,418   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-26T14:06:53,528   Getting requirements to build wheel: finished with status 'done'
2026-06-26T14:06:53,532   Created temporary directory: /tmp/pip-modern-metadata-weirzicg
2026-06-26T14:06:53,536   Preparing metadata (pyproject.toml): started
2026-06-26T14:06:53,537   Running command Preparing metadata (pyproject.toml)
2026-06-26T14:06:54,218   running dist_info
2026-06-26T14:06:54,228   creating /tmp/pip-modern-metadata-weirzicg/oncoref.egg-info
2026-06-26T14:06:54,229   writing /tmp/pip-modern-metadata-weirzicg/oncoref.egg-info/PKG-INFO
2026-06-26T14:06:54,236   writing dependency_links to /tmp/pip-modern-metadata-weirzicg/oncoref.egg-info/dependency_links.txt
2026-06-26T14:06:54,238   writing entry points to /tmp/pip-modern-metadata-weirzicg/oncoref.egg-info/entry_points.txt
2026-06-26T14:06:54,241   writing requirements to /tmp/pip-modern-metadata-weirzicg/oncoref.egg-info/requires.txt
2026-06-26T14:06:54,242   writing top-level names to /tmp/pip-modern-metadata-weirzicg/oncoref.egg-info/top_level.txt
2026-06-26T14:06:54,243   writing manifest file '/tmp/pip-modern-metadata-weirzicg/oncoref.egg-info/SOURCES.txt'
2026-06-26T14:06:54,276   reading manifest file '/tmp/pip-modern-metadata-weirzicg/oncoref.egg-info/SOURCES.txt'
2026-06-26T14:06:54,278   reading manifest template 'MANIFEST.in'
2026-06-26T14:06:54,279   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
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2026-06-26T14:06:54,285   adding license file 'LICENSE'
2026-06-26T14:06:54,291   writing manifest file '/tmp/pip-modern-metadata-weirzicg/oncoref.egg-info/SOURCES.txt'
2026-06-26T14:06:54,292   creating '/tmp/pip-modern-metadata-weirzicg/oncoref-1.8.13.dist-info'
2026-06-26T14:06:54,419   Preparing metadata (pyproject.toml): finished with status 'done'
2026-06-26T14:06:54,424   Source in /tmp/pip-wheel-womkzios/oncoref_d7dacd67978d4dbd8f27d73902077a7f has version 1.8.13, which satisfies requirement oncoref==1.8.13 from https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz
2026-06-26T14:06:54,425   Removed oncoref==1.8.13 from https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz from build tracker '/tmp/pip-build-tracker-0m1li6x3'
2026-06-26T14:06:54,431 Created temporary directory: /tmp/pip-unpack-59yeetxi
2026-06-26T14:06:54,432 Building wheels for collected packages: oncoref
2026-06-26T14:06:54,438   Created temporary directory: /tmp/pip-wheel-gcxxdpq7
2026-06-26T14:06:54,439   Destination directory: /tmp/pip-wheel-gcxxdpq7
2026-06-26T14:06:54,442   Building wheel for oncoref (pyproject.toml): started
2026-06-26T14:06:54,444   Running command Building wheel for oncoref (pyproject.toml)
2026-06-26T14:06:55,088   running bdist_wheel
2026-06-26T14:06:55,111   running build
2026-06-26T14:06:55,112   running build_py
2026-06-26T14:06:55,119   creating build/lib/oncoref
2026-06-26T14:06:55,121   copying oncoref/proteoforms.py -> build/lib/oncoref
2026-06-26T14:06:55,124   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-06-26T14:06:55,127   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-06-26T14:06:55,130   copying oncoref/expression.py -> build/lib/oncoref
2026-06-26T14:06:55,133   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-06-26T14:06:55,135   copying oncoref/cta.py -> build/lib/oncoref
2026-06-26T14:06:55,139   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-06-26T14:06:55,142   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-06-26T14:06:55,144   copying oncoref/cta_tissues.py -> build/lib/oncoref
2026-06-26T14:06:55,146   copying oncoref/reference_data.py -> build/lib/oncoref
2026-06-26T14:06:55,148   copying oncoref/ici.py -> build/lib/oncoref
2026-06-26T14:06:55,151   copying oncoref/expression_builders.py -> build/lib/oncoref
2026-06-26T14:06:55,153   copying oncoref/cohorts.py -> build/lib/oncoref
2026-06-26T14:06:55,155   copying oncoref/cli.py -> build/lib/oncoref
2026-06-26T14:06:55,158   copying oncoref/load_dataset.py -> build/lib/oncoref
2026-06-26T14:06:55,161   copying oncoref/antigen_coverage.py -> build/lib/oncoref
2026-06-26T14:06:55,162   copying oncoref/response_signatures.py -> build/lib/oncoref
2026-06-26T14:06:55,164   copying oncoref/coverage.py -> build/lib/oncoref
2026-06-26T14:06:55,167   copying oncoref/cancer_ontology.py -> build/lib/oncoref
2026-06-26T14:06:55,168   copying oncoref/cancer_types.py -> build/lib/oncoref
2026-06-26T14:06:55,172   copying oncoref/hpa.py -> build/lib/oncoref
2026-06-26T14:06:55,174   copying oncoref/peptides.py -> build/lib/oncoref
2026-06-26T14:06:55,176   copying oncoref/samples.py -> build/lib/oncoref
2026-06-26T14:06:55,178   copying oncoref/__init__.py -> build/lib/oncoref
2026-06-26T14:06:55,181   copying oncoref/genome.py -> build/lib/oncoref
2026-06-26T14:06:55,184   copying oncoref/ici_response.py -> build/lib/oncoref
2026-06-26T14:06:55,186   copying oncoref/catalog.py -> build/lib/oncoref
2026-06-26T14:06:55,188   copying oncoref/fusions.py -> build/lib/oncoref
2026-06-26T14:06:55,191   copying oncoref/cta_peptides.py -> build/lib/oncoref
2026-06-26T14:06:55,193   copying oncoref/gene_qc.py -> build/lib/oncoref
2026-06-26T14:06:55,195   copying oncoref/incidence.py -> build/lib/oncoref
2026-06-26T14:06:55,197   copying oncoref/apd1.py -> build/lib/oncoref
2026-06-26T14:06:55,199   copying oncoref/tmb.py -> build/lib/oncoref
2026-06-26T14:06:55,201   copying oncoref/expression_registry.py -> build/lib/oncoref
2026-06-26T14:06:55,204   copying oncoref/gene_families.py -> build/lib/oncoref
2026-06-26T14:06:55,206   copying oncoref/cancer_genes.py -> build/lib/oncoref
2026-06-26T14:06:55,208   copying oncoref/data_manifest.py -> build/lib/oncoref
2026-06-26T14:06:55,211   copying oncoref/cta_coverage.py -> build/lib/oncoref
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2026-06-26T14:06:55,219   copying oncoref/plots.py -> build/lib/oncoref
2026-06-26T14:06:55,235   creating build/lib/oncoref/data
2026-06-26T14:06:55,236   copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,244   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,246   copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,248   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,250   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,252   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,254   copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,257   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,261   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,266   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,270   copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,277   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
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2026-06-26T14:06:55,282   copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,284   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,286   copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,288   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,293   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,295   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,297   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,300   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,304   copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,308   copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,310   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
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2026-06-26T14:06:55,314   copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,316   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,319   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,321   copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,324   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,328   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,331   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,334   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,336   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,342   copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,345   copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,349   copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,354   copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,359   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,365   copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,368   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,372   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,374   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,377   copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,379   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,381   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,384   copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,386   copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,389   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,392   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,395   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,401   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,404   copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data
2026-06-26T14:06:55,407   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-06-26T14:06:55,421   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-06-26T14:06:55,429   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-06-26T14:06:55,441   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-06-26T14:06:55,456   installing to build/bdist.linux-armv7l/wheel
2026-06-26T14:06:55,456   running install
2026-06-26T14:06:55,480   running install_lib
2026-06-26T14:06:55,486   creating build/bdist.linux-armv7l/wheel
2026-06-26T14:06:55,489   creating build/bdist.linux-armv7l/wheel/oncoref
2026-06-26T14:06:55,491   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,496   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,503   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,510   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,515   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,517   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,520   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,523   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,525   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,528   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,530   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,533   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,536   copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,538   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,541   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,544   copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,546   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,548   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,551   copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,553   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,557   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,560   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,562   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,564   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,567   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,570   copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,572   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,575   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,577   copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,579   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,582   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,585   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,587   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,590   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,592   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,595   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,597   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,600   copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,603   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-06-26T14:06:55,605   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,615   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,617   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,619   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,651   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,653   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,655   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,657   copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,660   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,680   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,683   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,685   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,688   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,690   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,692   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,705   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,707   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,709   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,716   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,719   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,721   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,726   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,736   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,739   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,741   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,744   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,746   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,749   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,751   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,754   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,757   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,763   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,765   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,772   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,775   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,777   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,783   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,785   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,788   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,798   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,802   copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,805   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,809   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,813   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,815   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,818   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,819   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,822   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,824   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,826   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,829   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,830   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,833   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,836   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,838   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,844   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,847   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T14:06:55,849   copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,851   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,853   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,855   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T14:06:55,858   running install_egg_info
2026-06-26T14:06:55,867   running egg_info
2026-06-26T14:06:55,872   writing oncoref.egg-info/PKG-INFO
2026-06-26T14:06:55,878   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-26T14:06:55,880   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-26T14:06:55,883   writing requirements to oncoref.egg-info/requires.txt
2026-06-26T14:06:55,884   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-26T14:06:55,904   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-26T14:06:55,913   reading manifest template 'MANIFEST.in'
2026-06-26T14:06:55,915   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-26T14:06:55,916   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-26T14:06:55,917   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-26T14:06:55,918   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-26T14:06:55,919   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-26T14:06:55,920   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-26T14:06:55,921   adding license file 'LICENSE'
2026-06-26T14:06:55,929   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-26T14:06:55,931   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.13-py3.11.egg-info
2026-06-26T14:06:55,943   running install_scripts
2026-06-26T14:06:55,955   creating build/bdist.linux-armv7l/wheel/oncoref-1.8.13.dist-info/WHEEL
2026-06-26T14:06:55,958   creating '/tmp/pip-wheel-gcxxdpq7/.tmp-93yymibx/oncoref-1.8.13-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-26T14:06:55,962   adding 'oncoref/__init__.py'
2026-06-26T14:06:55,964   adding 'oncoref/antigen_coverage.py'
2026-06-26T14:06:55,966   adding 'oncoref/apd1.py'
2026-06-26T14:06:55,968   adding 'oncoref/cancer_genes.py'
2026-06-26T14:06:55,969   adding 'oncoref/cancer_ontology.py'
2026-06-26T14:06:55,976   adding 'oncoref/cancer_types.py'
2026-06-26T14:06:55,979   adding 'oncoref/catalog.py'
2026-06-26T14:06:55,983   adding 'oncoref/cli.py'
2026-06-26T14:06:55,985   adding 'oncoref/cohorts.py'
2026-06-26T14:06:55,989   adding 'oncoref/coverage.py'
2026-06-26T14:06:55,991   adding 'oncoref/cta.py'
2026-06-26T14:06:55,993   adding 'oncoref/cta_coverage.py'
2026-06-26T14:06:55,995   adding 'oncoref/cta_curation_plots.py'
2026-06-26T14:06:55,996   adding 'oncoref/cta_peptides.py'
2026-06-26T14:06:56,000   adding 'oncoref/cta_regen.py'
2026-06-26T14:06:56,001   adding 'oncoref/cta_tissues.py'
2026-06-26T14:06:56,004   adding 'oncoref/data_bundle.py'
2026-06-26T14:06:56,006   adding 'oncoref/data_manifest.py'
2026-06-26T14:06:56,017   adding 'oncoref/expression.py'
2026-06-26T14:06:56,019   adding 'oncoref/expression_builders.py'
2026-06-26T14:06:56,021   adding 'oncoref/expression_engine.py'
2026-06-26T14:06:56,023   adding 'oncoref/expression_registry.py'
2026-06-26T14:06:56,025   adding 'oncoref/fusions.py'
2026-06-26T14:06:56,027   adding 'oncoref/gene_families.py'
2026-06-26T14:06:56,029   adding 'oncoref/gene_ids.py'
2026-06-26T14:06:56,031   adding 'oncoref/gene_qc.py'
2026-06-26T14:06:56,034   adding 'oncoref/genome.py'
2026-06-26T14:06:56,035   adding 'oncoref/hpa.py'
2026-06-26T14:06:56,040   adding 'oncoref/ici.py'
2026-06-26T14:06:56,041   adding 'oncoref/ici_response.py'
2026-06-26T14:06:56,043   adding 'oncoref/incidence.py'
2026-06-26T14:06:56,045   adding 'oncoref/load_dataset.py'
2026-06-26T14:06:56,049   adding 'oncoref/normalization.py'
2026-06-26T14:06:56,051   adding 'oncoref/peptides.py'
2026-06-26T14:06:56,058   adding 'oncoref/plots.py'
2026-06-26T14:06:56,061   adding 'oncoref/proteoforms.py'
2026-06-26T14:06:56,063   adding 'oncoref/reference_data.py'
2026-06-26T14:06:56,064   adding 'oncoref/response_signatures.py'
2026-06-26T14:06:56,065   adding 'oncoref/samples.py'
2026-06-26T14:06:56,067   adding 'oncoref/source_matrices.py'
2026-06-26T14:06:56,068   adding 'oncoref/tmb.py'
2026-06-26T14:06:56,070   adding 'oncoref/version.py'
2026-06-26T14:06:56,074   adding 'oncoref/data/cancer-apd1-response.csv'
2026-06-26T14:06:56,075   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-06-26T14:06:56,076   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-06-26T14:06:56,081   adding 'oncoref/data/cancer-driver-genes.csv'
2026-06-26T14:06:56,084   adding 'oncoref/data/cancer-driver-variants.csv'
2026-06-26T14:06:56,086   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-06-26T14:06:56,088   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-06-26T14:06:56,091   adding 'oncoref/data/cancer-fusions.csv'
2026-06-26T14:06:56,108   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-06-26T14:06:56,112   adding 'oncoref/data/cancer-ici-response.csv'
2026-06-26T14:06:56,114   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-06-26T14:06:56,128   adding 'oncoref/data/cancer-key-genes.csv'
2026-06-26T14:06:56,130   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-06-26T14:06:56,131   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-06-26T14:06:56,133   adding 'oncoref/data/cancer-normal-tissue-map.csv'
2026-06-26T14:06:56,162   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-06-26T14:06:56,165   adding 'oncoref/data/cancer-response-signatures.csv'
2026-06-26T14:06:56,166   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-06-26T14:06:56,178   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-06-26T14:06:56,181   adding 'oncoref/data/cancer-tmb.csv'
2026-06-26T14:06:56,184   adding 'oncoref/data/cancer-type-genes.csv'
2026-06-26T14:06:56,188   adding 'oncoref/data/cancer-type-registry.csv'
2026-06-26T14:06:56,189   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-06-26T14:06:56,242   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-06-26T14:06:56,248   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-06-26T14:06:56,252   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-06-26T14:06:56,253   adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv'
2026-06-26T14:06:56,264   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-06-26T14:06:56,266   adding 'oncoref/data/cohort-registry.csv'
2026-06-26T14:06:56,268   adding 'oncoref/data/cta-candidate-references.csv'
2026-06-26T14:06:56,269   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-06-26T14:06:56,271   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-06-26T14:06:56,272   adding 'oncoref/data/disease-state-rules.csv'
2026-06-26T14:06:56,300   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-06-26T14:06:56,306   adding 'oncoref/data/expression_sources.yaml'
2026-06-26T14:06:56,308   adding 'oncoref/data/extra-tx-mappings.csv'
2026-06-26T14:06:56,310   adding 'oncoref/data/family-burden-map.csv'
2026-06-26T14:06:56,311   adding 'oncoref/data/fusion-expression-effects.csv'
2026-06-26T14:06:56,313   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-06-26T14:06:56,314   adding 'oncoref/data/hemoglobin-genes.csv'
2026-06-26T14:06:56,316   adding 'oncoref/data/histone-genes.csv'
2026-06-26T14:06:56,317   adding 'oncoref/data/housekeeping-genes.csv'
2026-06-26T14:06:56,319   adding 'oncoref/data/mitochondrial-genes.csv'
2026-06-26T14:06:56,320   adding 'oncoref/data/narrative-gene-sets.csv'
2026-06-26T14:06:56,360   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-06-26T14:06:56,364   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-06-26T14:06:56,366   adding 'oncoref/data/numt-pseudogenes.csv'
2026-06-26T14:06:56,368   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-06-26T14:06:56,370   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-06-26T14:06:56,372   adding 'oncoref/data/proteoform-groups.csv'
2026-06-26T14:06:56,374   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-06-26T14:06:56,375   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-06-26T14:06:56,382   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-06-26T14:06:56,385   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-06-26T14:06:56,404   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-06-26T14:06:56,406   adding 'oncoref/data/source-matrices.csv'
2026-06-26T14:06:56,408   adding 'oncoref/data/tissue-burden-map.csv'
2026-06-26T14:06:56,411   adding 'oncoref-1.8.13.dist-info/licenses/LICENSE'
2026-06-26T14:06:56,413   adding 'oncoref-1.8.13.dist-info/METADATA'
2026-06-26T14:06:56,414   adding 'oncoref-1.8.13.dist-info/WHEEL'
2026-06-26T14:06:56,415   adding 'oncoref-1.8.13.dist-info/entry_points.txt'
2026-06-26T14:06:56,416   adding 'oncoref-1.8.13.dist-info/top_level.txt'
2026-06-26T14:06:56,418   adding 'oncoref-1.8.13.dist-info/RECORD'
2026-06-26T14:06:56,447   removing build/bdist.linux-armv7l/wheel
2026-06-26T14:06:56,571   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-06-26T14:06:56,619   Created wheel for oncoref: filename=oncoref-1.8.13-py3-none-any.whl size=1665692 sha256=91c3e1fa8448033a913075559a2ee2b76fcbad64e20aeb7696484a9a5619dbef
2026-06-26T14:06:56,620   Stored in directory: /tmp/pip-ephem-wheel-cache-ixzndvql/wheels/48/30/72/83d9c133b6ab1d44dcdc354a733bc35abc31efaddffeedaeac
2026-06-26T14:06:56,637 Successfully built oncoref
2026-06-26T14:06:56,698 Removed build tracker: '/tmp/pip-build-tracker-0m1li6x3'