2026-06-26T15:32:20,242 Created temporary directory: /tmp/pip-ephem-wheel-cache-bouy94fn
2026-06-26T15:32:20,244 Created temporary directory: /tmp/pip-build-tracker-29jjt2mj
2026-06-26T15:32:20,244 Initialized build tracking at /tmp/pip-build-tracker-29jjt2mj
2026-06-26T15:32:20,245 Created build tracker: /tmp/pip-build-tracker-29jjt2mj
2026-06-26T15:32:20,245 Entered build tracker: /tmp/pip-build-tracker-29jjt2mj
2026-06-26T15:32:20,246 Created temporary directory: /tmp/pip-wheel-e2zkdjou
2026-06-26T15:32:20,249 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-26T15:32:20,251 Created temporary directory: /tmp/pip-ephem-wheel-cache-yubleuen
2026-06-26T15:32:20,276 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-26T15:32:20,279 2 location(s) to search for versions of oncoref:
2026-06-26T15:32:20,279 * https://pypi.org/simple/oncoref/
2026-06-26T15:32:20,279 * https://www.piwheels.org/simple/oncoref/
2026-06-26T15:32:20,280 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-06-26T15:32:20,281 Getting page https://pypi.org/simple/oncoref/
2026-06-26T15:32:20,282 Found index url https://pypi.org/simple
2026-06-26T15:32:20,510 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-06-26T15:32:20,517   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,518   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-06-26T15:32:20,519   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,520   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-06-26T15:32:20,521   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,521   Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0
2026-06-26T15:32:20,522   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,523   Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1
2026-06-26T15:32:20,524   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,525   Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2
2026-06-26T15:32:20,526   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,527   Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3
2026-06-26T15:32:20,528   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,528   Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4
2026-06-26T15:32:20,529   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,530   Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5
2026-06-26T15:32:20,531   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,531   Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6
2026-06-26T15:32:20,532   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,533   Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7
2026-06-26T15:32:20,534   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,535   Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8
2026-06-26T15:32:20,535   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,536   Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9
2026-06-26T15:32:20,537   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,538   Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10
2026-06-26T15:32:20,539   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,540   Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11
2026-06-26T15:32:20,540   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,541   Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12
2026-06-26T15:32:20,542   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,543   Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13
2026-06-26T15:32:20,544   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,545   Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14
2026-06-26T15:32:20,545 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-06-26T15:32:20,546 Getting page https://www.piwheels.org/simple/oncoref/
2026-06-26T15:32:20,547 Found index url https://www.piwheels.org/simple
2026-06-26T15:32:20,747 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
2026-06-26T15:32:20,753   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.13-py3-none-any.whl#sha256=91c3e1fa8448033a913075559a2ee2b76fcbad64e20aeb7696484a9a5619dbef (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,754   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.12-py3-none-any.whl#sha256=2a0e59477b8939fc63d4a78f31b0b793fb2f49ea2aab861d853fa8479ccf9608 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,755   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.11-py3-none-any.whl#sha256=602ac0deb73739e65dfb65105b23357a94a67eb9e1faac0880bff5203ed4a818 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,755   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.10-py3-none-any.whl#sha256=3e789fd35641073e8afc8885dcef12d74a2323c2e0c8dad7b5e369392675e83a (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,756   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.9-py3-none-any.whl#sha256=2415de57054126a885d64b626bbb12657ce55d0791a686b7aba85fd8b784d399 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,756   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.8-py3-none-any.whl#sha256=f1b7351039ce534abc9d36a03b53fd9479b1629b4a6fd8698bc500162f1cd362 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,757   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.7-py3-none-any.whl#sha256=84f80af8afa25d02579e67983b74fd2e515df1ce6d0cb602ecb6808e994f8f63 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,758   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.6-py3-none-any.whl#sha256=460f281fc846e410a5992e3a87193febdfac8bf81f3e5497a5e5d72ae58176bf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,758   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,759   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,759   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,760   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,760   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,761   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,761   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,762   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-26T15:32:20,762 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-06-26T15:32:20,763 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-06-26T15:32:20,785 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-06-26T15:32:20,805 Collecting oncoref==1.8.14
2026-06-26T15:32:20,807   Created temporary directory: /tmp/pip-unpack-15kzh8y_
2026-06-26T15:32:20,955   Downloading oncoref-1.8.14.tar.gz (1.7 MB)
2026-06-26T15:32:21,563   Added oncoref==1.8.14 from https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz to build tracker '/tmp/pip-build-tracker-29jjt2mj'
2026-06-26T15:32:21,570   Created temporary directory: /tmp/pip-build-env-3lmvongi
2026-06-26T15:32:21,574   Installing build dependencies: started
2026-06-26T15:32:21,576   Running command pip subprocess to install build dependencies
2026-06-26T15:32:22,691   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-06-26T15:32:23,097   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-26T15:32:23,119   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-26T15:32:25,381   Collecting setuptools>=61.0
2026-06-26T15:32:25,382     Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-06-26T15:32:25,414     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-06-26T15:32:25,653   Collecting wheel
2026-06-26T15:32:25,653     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-06-26T15:32:25,669     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-06-26T15:32:25,859   Collecting packaging>=24.0
2026-06-26T15:32:25,860     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-06-26T15:32:25,877     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-06-26T15:32:26,070   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-26T15:32:26,093   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-26T15:32:26,177   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-26T15:32:26,235   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-26T15:32:26,260   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-26T15:32:26,369   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-26T15:32:29,160   Installing collected packages: setuptools, packaging, wheel
2026-06-26T15:32:32,575     Creating /tmp/pip-build-env-3lmvongi/overlay/local/bin
2026-06-26T15:32:32,577     changing mode of /tmp/pip-build-env-3lmvongi/overlay/local/bin/wheel to 755
2026-06-26T15:32:32,598   Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0
2026-06-26T15:32:32,883   Installing build dependencies: finished with status 'done'
2026-06-26T15:32:32,889   Getting requirements to build wheel: started
2026-06-26T15:32:32,891   Running command Getting requirements to build wheel
2026-06-26T15:32:33,571   running egg_info
2026-06-26T15:32:33,577   writing oncoref.egg-info/PKG-INFO
2026-06-26T15:32:33,583   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-26T15:32:33,586   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-26T15:32:33,589   writing requirements to oncoref.egg-info/requires.txt
2026-06-26T15:32:33,590   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-26T15:32:33,626   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-26T15:32:33,635   reading manifest template 'MANIFEST.in'
2026-06-26T15:32:33,637   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-26T15:32:33,639   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-26T15:32:33,640   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-26T15:32:33,642   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-26T15:32:33,643   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-26T15:32:33,645   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-26T15:32:33,645   adding license file 'LICENSE'
2026-06-26T15:32:33,654   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-26T15:32:33,752   Getting requirements to build wheel: finished with status 'done'
2026-06-26T15:32:33,756   Created temporary directory: /tmp/pip-modern-metadata-teh4uh5n
2026-06-26T15:32:33,758   Preparing metadata (pyproject.toml): started
2026-06-26T15:32:33,759   Running command Preparing metadata (pyproject.toml)
2026-06-26T15:32:34,406   running dist_info
2026-06-26T15:32:34,416   creating /tmp/pip-modern-metadata-teh4uh5n/oncoref.egg-info
2026-06-26T15:32:34,416   writing /tmp/pip-modern-metadata-teh4uh5n/oncoref.egg-info/PKG-INFO
2026-06-26T15:32:34,422   writing dependency_links to /tmp/pip-modern-metadata-teh4uh5n/oncoref.egg-info/dependency_links.txt
2026-06-26T15:32:34,424   writing entry points to /tmp/pip-modern-metadata-teh4uh5n/oncoref.egg-info/entry_points.txt
2026-06-26T15:32:34,426   writing requirements to /tmp/pip-modern-metadata-teh4uh5n/oncoref.egg-info/requires.txt
2026-06-26T15:32:34,427   writing top-level names to /tmp/pip-modern-metadata-teh4uh5n/oncoref.egg-info/top_level.txt
2026-06-26T15:32:34,429   writing manifest file '/tmp/pip-modern-metadata-teh4uh5n/oncoref.egg-info/SOURCES.txt'
2026-06-26T15:32:34,461   reading manifest file '/tmp/pip-modern-metadata-teh4uh5n/oncoref.egg-info/SOURCES.txt'
2026-06-26T15:32:34,463   reading manifest template 'MANIFEST.in'
2026-06-26T15:32:34,464   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-26T15:32:34,465   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-26T15:32:34,467   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-26T15:32:34,468   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-26T15:32:34,469   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-26T15:32:34,470   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-26T15:32:34,470   adding license file 'LICENSE'
2026-06-26T15:32:34,477   writing manifest file '/tmp/pip-modern-metadata-teh4uh5n/oncoref.egg-info/SOURCES.txt'
2026-06-26T15:32:34,478   creating '/tmp/pip-modern-metadata-teh4uh5n/oncoref-1.8.14.dist-info'
2026-06-26T15:32:34,604   Preparing metadata (pyproject.toml): finished with status 'done'
2026-06-26T15:32:34,608   Source in /tmp/pip-wheel-e2zkdjou/oncoref_42067ecb5dfd4419b0107477f8056663 has version 1.8.14, which satisfies requirement oncoref==1.8.14 from https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz
2026-06-26T15:32:34,609   Removed oncoref==1.8.14 from https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz from build tracker '/tmp/pip-build-tracker-29jjt2mj'
2026-06-26T15:32:34,615 Created temporary directory: /tmp/pip-unpack-l0mmf7jd
2026-06-26T15:32:34,616 Building wheels for collected packages: oncoref
2026-06-26T15:32:34,621   Created temporary directory: /tmp/pip-wheel-4ggz1yq7
2026-06-26T15:32:34,621   Destination directory: /tmp/pip-wheel-4ggz1yq7
2026-06-26T15:32:34,623   Building wheel for oncoref (pyproject.toml): started
2026-06-26T15:32:34,625   Running command Building wheel for oncoref (pyproject.toml)
2026-06-26T15:32:35,285   running bdist_wheel
2026-06-26T15:32:35,302   running build
2026-06-26T15:32:35,303   running build_py
2026-06-26T15:32:35,311   creating build/lib/oncoref
2026-06-26T15:32:35,315   copying oncoref/ici_response.py -> build/lib/oncoref
2026-06-26T15:32:35,318   copying oncoref/coverage.py -> build/lib/oncoref
2026-06-26T15:32:35,321   copying oncoref/normalization.py -> build/lib/oncoref
2026-06-26T15:32:35,324   copying oncoref/gene_families.py -> build/lib/oncoref
2026-06-26T15:32:35,327   copying oncoref/tmb.py -> build/lib/oncoref
2026-06-26T15:32:35,329   copying oncoref/reference_data.py -> build/lib/oncoref
2026-06-26T15:32:35,331   copying oncoref/apd1.py -> build/lib/oncoref
2026-06-26T15:32:35,333   copying oncoref/cta.py -> build/lib/oncoref
2026-06-26T15:32:35,335   copying oncoref/__init__.py -> build/lib/oncoref
2026-06-26T15:32:35,338   copying oncoref/cta_curation_plots.py -> build/lib/oncoref
2026-06-26T15:32:35,340   copying oncoref/cta_peptides.py -> build/lib/oncoref
2026-06-26T15:32:35,342   copying oncoref/load_dataset.py -> build/lib/oncoref
2026-06-26T15:32:35,344   copying oncoref/fusions.py -> build/lib/oncoref
2026-06-26T15:32:35,347   copying oncoref/antigen_coverage.py -> build/lib/oncoref
2026-06-26T15:32:35,349   copying oncoref/samples.py -> build/lib/oncoref
2026-06-26T15:32:35,351   copying oncoref/cli.py -> build/lib/oncoref
2026-06-26T15:32:35,353   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-06-26T15:32:35,356   copying oncoref/proteoforms.py -> build/lib/oncoref
2026-06-26T15:32:35,358   copying oncoref/ici.py -> build/lib/oncoref
2026-06-26T15:32:35,361   copying oncoref/cta_tissues.py -> build/lib/oncoref
2026-06-26T15:32:35,364   copying oncoref/cancer_ontology.py -> build/lib/oncoref
2026-06-26T15:32:35,365   copying oncoref/data_manifest.py -> build/lib/oncoref
2026-06-26T15:32:35,368   copying oncoref/catalog.py -> build/lib/oncoref
2026-06-26T15:32:35,370   copying oncoref/version.py -> build/lib/oncoref
2026-06-26T15:32:35,372   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-06-26T15:32:35,374   copying oncoref/response_signatures.py -> build/lib/oncoref
2026-06-26T15:32:35,376   copying oncoref/hpa.py -> build/lib/oncoref
2026-06-26T15:32:35,379   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-06-26T15:32:35,381   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-06-26T15:32:35,384   copying oncoref/gene_qc.py -> build/lib/oncoref
2026-06-26T15:32:35,387   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-06-26T15:32:35,389   copying oncoref/expression.py -> build/lib/oncoref
2026-06-26T15:32:35,393   copying oncoref/cancer_types.py -> build/lib/oncoref
2026-06-26T15:32:35,397   copying oncoref/cancer_genes.py -> build/lib/oncoref
2026-06-26T15:32:35,399   copying oncoref/expression_registry.py -> build/lib/oncoref
2026-06-26T15:32:35,401   copying oncoref/plots.py -> build/lib/oncoref
2026-06-26T15:32:35,405   copying oncoref/peptides.py -> build/lib/oncoref
2026-06-26T15:32:35,407   copying oncoref/incidence.py -> build/lib/oncoref
2026-06-26T15:32:35,409   copying oncoref/cta_coverage.py -> build/lib/oncoref
2026-06-26T15:32:35,411   copying oncoref/cohorts.py -> build/lib/oncoref
2026-06-26T15:32:35,413   copying oncoref/expression_builders.py -> build/lib/oncoref
2026-06-26T15:32:35,416   copying oncoref/genome.py -> build/lib/oncoref
2026-06-26T15:32:35,433   creating build/lib/oncoref/data
2026-06-26T15:32:35,434   copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,436   copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,439   copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,441   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,443   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,447   copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,450   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,452   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,455   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,457   copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,460   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,463   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,469   copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,472   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,475   copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,478   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,480   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,483   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,485   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,488   copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,491   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,493   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,496   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,498   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,500   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,506   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,509   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,511   copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,513   copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,516   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,523   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,525   copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,528   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,534   copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,537   copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,540   copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,543   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,546   copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,550   copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,552   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,555   copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,564   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,566   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,569   copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,571   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,574   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,577   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,580   copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,582   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,584   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,586   copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,589   copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,591   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
2026-06-26T15:32:35,595   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-06-26T15:32:35,601   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-06-26T15:32:35,611   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-06-26T15:32:35,618   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-06-26T15:32:35,632   installing to build/bdist.linux-armv7l/wheel
2026-06-26T15:32:35,633   running install
2026-06-26T15:32:35,658   running install_lib
2026-06-26T15:32:35,665   creating build/bdist.linux-armv7l/wheel
2026-06-26T15:32:35,670   creating build/bdist.linux-armv7l/wheel/oncoref
2026-06-26T15:32:35,673   copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,676   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,681   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,684   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,689   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,696   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,703   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,705   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,709   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,712   copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,715   copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,717   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,720   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,722   copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,724   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,726   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,728   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,731   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,733   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,736   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,738   copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,740   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,742   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,744   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,746   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,749   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,751   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,753   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,755   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,757   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,759   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,763   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-06-26T15:32:35,764   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,765   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,767   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,769   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,771   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,774   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,776   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,778   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,780   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,782   copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,784   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,787   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,792   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,795   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,797   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,799   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,801   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,804   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,806   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,809   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,811   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,819   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,821   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,823   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,825   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,827   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,830   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,835   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,837   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,838   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,840   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,842   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,847   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,849   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,851   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,855   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,858   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,860   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,862   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,865   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,868   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,870   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,872   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,879   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,881   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,884   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,885   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,888   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,891   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,893   copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,895   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,904   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,906   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,908   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,910   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,912   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,916   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-26T15:32:35,926   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,929   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,933   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,935   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,938   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,941   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,944   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,946   copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,949   copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,951   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,953   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-26T15:32:35,956   running install_egg_info
2026-06-26T15:32:35,965   running egg_info
2026-06-26T15:32:35,971   writing oncoref.egg-info/PKG-INFO
2026-06-26T15:32:35,976   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-26T15:32:35,978   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-26T15:32:35,980   writing requirements to oncoref.egg-info/requires.txt
2026-06-26T15:32:35,981   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-26T15:32:36,000   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-26T15:32:36,010   reading manifest template 'MANIFEST.in'
2026-06-26T15:32:36,012   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-26T15:32:36,013   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-26T15:32:36,015   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-26T15:32:36,016   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-26T15:32:36,018   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-26T15:32:36,019   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-26T15:32:36,020   adding license file 'LICENSE'
2026-06-26T15:32:36,028   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-26T15:32:36,030   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.14-py3.11.egg-info
2026-06-26T15:32:36,044   running install_scripts
2026-06-26T15:32:36,057   creating build/bdist.linux-armv7l/wheel/oncoref-1.8.14.dist-info/WHEEL
2026-06-26T15:32:36,060   creating '/tmp/pip-wheel-4ggz1yq7/.tmp-8avca9jn/oncoref-1.8.14-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-26T15:32:36,064   adding 'oncoref/__init__.py'
2026-06-26T15:32:36,067   adding 'oncoref/antigen_coverage.py'
2026-06-26T15:32:36,068   adding 'oncoref/apd1.py'
2026-06-26T15:32:36,070   adding 'oncoref/cancer_genes.py'
2026-06-26T15:32:36,072   adding 'oncoref/cancer_ontology.py'
2026-06-26T15:32:36,079   adding 'oncoref/cancer_types.py'
2026-06-26T15:32:36,082   adding 'oncoref/catalog.py'
2026-06-26T15:32:36,085   adding 'oncoref/cli.py'
2026-06-26T15:32:36,087   adding 'oncoref/cohorts.py'
2026-06-26T15:32:36,091   adding 'oncoref/coverage.py'
2026-06-26T15:32:36,094   adding 'oncoref/cta.py'
2026-06-26T15:32:36,096   adding 'oncoref/cta_coverage.py'
2026-06-26T15:32:36,098   adding 'oncoref/cta_curation_plots.py'
2026-06-26T15:32:36,100   adding 'oncoref/cta_peptides.py'
2026-06-26T15:32:36,103   adding 'oncoref/cta_regen.py'
2026-06-26T15:32:36,105   adding 'oncoref/cta_tissues.py'
2026-06-26T15:32:36,107   adding 'oncoref/data_bundle.py'
2026-06-26T15:32:36,110   adding 'oncoref/data_manifest.py'
2026-06-26T15:32:36,120   adding 'oncoref/expression.py'
2026-06-26T15:32:36,123   adding 'oncoref/expression_builders.py'
2026-06-26T15:32:36,125   adding 'oncoref/expression_engine.py'
2026-06-26T15:32:36,127   adding 'oncoref/expression_registry.py'
2026-06-26T15:32:36,129   adding 'oncoref/fusions.py'
2026-06-26T15:32:36,132   adding 'oncoref/gene_families.py'
2026-06-26T15:32:36,134   adding 'oncoref/gene_ids.py'
2026-06-26T15:32:36,136   adding 'oncoref/gene_qc.py'
2026-06-26T15:32:36,139   adding 'oncoref/genome.py'
2026-06-26T15:32:36,140   adding 'oncoref/hpa.py'
2026-06-26T15:32:36,145   adding 'oncoref/ici.py'
2026-06-26T15:32:36,147   adding 'oncoref/ici_response.py'
2026-06-26T15:32:36,149   adding 'oncoref/incidence.py'
2026-06-26T15:32:36,151   adding 'oncoref/load_dataset.py'
2026-06-26T15:32:36,155   adding 'oncoref/normalization.py'
2026-06-26T15:32:36,158   adding 'oncoref/peptides.py'
2026-06-26T15:32:36,165   adding 'oncoref/plots.py'
2026-06-26T15:32:36,168   adding 'oncoref/proteoforms.py'
2026-06-26T15:32:36,170   adding 'oncoref/reference_data.py'
2026-06-26T15:32:36,172   adding 'oncoref/response_signatures.py'
2026-06-26T15:32:36,174   adding 'oncoref/samples.py'
2026-06-26T15:32:36,176   adding 'oncoref/source_matrices.py'
2026-06-26T15:32:36,178   adding 'oncoref/tmb.py'
2026-06-26T15:32:36,179   adding 'oncoref/version.py'
2026-06-26T15:32:36,183   adding 'oncoref/data/cancer-apd1-response.csv'
2026-06-26T15:32:36,185   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-06-26T15:32:36,186   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-06-26T15:32:36,192   adding 'oncoref/data/cancer-driver-genes.csv'
2026-06-26T15:32:36,194   adding 'oncoref/data/cancer-driver-variants.csv'
2026-06-26T15:32:36,197   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-06-26T15:32:36,199   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-06-26T15:32:36,202   adding 'oncoref/data/cancer-fusions.csv'
2026-06-26T15:32:36,220   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-06-26T15:32:36,224   adding 'oncoref/data/cancer-ici-response.csv'
2026-06-26T15:32:36,226   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-06-26T15:32:36,241   adding 'oncoref/data/cancer-key-genes.csv'
2026-06-26T15:32:36,243   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-06-26T15:32:36,245   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-06-26T15:32:36,246   adding 'oncoref/data/cancer-normal-tissue-map.csv'
2026-06-26T15:32:36,275   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-06-26T15:32:36,279   adding 'oncoref/data/cancer-response-signatures.csv'
2026-06-26T15:32:36,280   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-06-26T15:32:36,292   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-06-26T15:32:36,294   adding 'oncoref/data/cancer-tmb.csv'
2026-06-26T15:32:36,297   adding 'oncoref/data/cancer-type-genes.csv'
2026-06-26T15:32:36,301   adding 'oncoref/data/cancer-type-registry.csv'
2026-06-26T15:32:36,302   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-06-26T15:32:36,355   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-06-26T15:32:36,360   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-06-26T15:32:36,364   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-06-26T15:32:36,366   adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv'
2026-06-26T15:32:36,377   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-06-26T15:32:36,379   adding 'oncoref/data/cohort-registry.csv'
2026-06-26T15:32:36,381   adding 'oncoref/data/cta-candidate-references.csv'
2026-06-26T15:32:36,383   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-06-26T15:32:36,385   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-06-26T15:32:36,387   adding 'oncoref/data/disease-state-rules.csv'
2026-06-26T15:32:36,414   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-06-26T15:32:36,422   adding 'oncoref/data/expression_sources.yaml'
2026-06-26T15:32:36,424   adding 'oncoref/data/extra-tx-mappings.csv'
2026-06-26T15:32:36,425   adding 'oncoref/data/family-burden-map.csv'
2026-06-26T15:32:36,426   adding 'oncoref/data/fusion-expression-effects.csv'
2026-06-26T15:32:36,428   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-06-26T15:32:36,429   adding 'oncoref/data/hemoglobin-genes.csv'
2026-06-26T15:32:36,430   adding 'oncoref/data/histone-genes.csv'
2026-06-26T15:32:36,431   adding 'oncoref/data/housekeeping-genes.csv'
2026-06-26T15:32:36,433   adding 'oncoref/data/mitochondrial-genes.csv'
2026-06-26T15:32:36,434   adding 'oncoref/data/narrative-gene-sets.csv'
2026-06-26T15:32:36,474   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-06-26T15:32:36,477   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-06-26T15:32:36,480   adding 'oncoref/data/numt-pseudogenes.csv'
2026-06-26T15:32:36,481   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-06-26T15:32:36,485   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-06-26T15:32:36,487   adding 'oncoref/data/proteoform-groups.csv'
2026-06-26T15:32:36,489   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-06-26T15:32:36,491   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-06-26T15:32:36,500   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-06-26T15:32:36,503   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-06-26T15:32:36,531   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-06-26T15:32:36,534   adding 'oncoref/data/source-matrices.csv'
2026-06-26T15:32:36,535   adding 'oncoref/data/tissue-burden-map.csv'
2026-06-26T15:32:36,540   adding 'oncoref-1.8.14.dist-info/licenses/LICENSE'
2026-06-26T15:32:36,543   adding 'oncoref-1.8.14.dist-info/METADATA'
2026-06-26T15:32:36,544   adding 'oncoref-1.8.14.dist-info/WHEEL'
2026-06-26T15:32:36,545   adding 'oncoref-1.8.14.dist-info/entry_points.txt'
2026-06-26T15:32:36,546   adding 'oncoref-1.8.14.dist-info/top_level.txt'
2026-06-26T15:32:36,549   adding 'oncoref-1.8.14.dist-info/RECORD'
2026-06-26T15:32:36,573   removing build/bdist.linux-armv7l/wheel
2026-06-26T15:32:36,704   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-06-26T15:32:36,743   Created wheel for oncoref: filename=oncoref-1.8.14-py3-none-any.whl size=1665762 sha256=ac41cf84ca97c695a15f40326738750e2762e39f366bf99300777803874b26da
2026-06-26T15:32:36,745   Stored in directory: /tmp/pip-ephem-wheel-cache-yubleuen/wheels/58/d1/6b/c9852c71c4e76712d2e0e360e375c206eb4605063e245cabf1
2026-06-26T15:32:36,760 Successfully built oncoref
2026-06-26T15:32:36,815 Removed build tracker: '/tmp/pip-build-tracker-29jjt2mj'