2026-06-26T17:52:39,751 Created temporary directory: /tmp/pip-ephem-wheel-cache-2iqgdwix 2026-06-26T17:52:39,753 Created temporary directory: /tmp/pip-build-tracker-p5ps04hi 2026-06-26T17:52:39,754 Initialized build tracking at /tmp/pip-build-tracker-p5ps04hi 2026-06-26T17:52:39,754 Created build tracker: /tmp/pip-build-tracker-p5ps04hi 2026-06-26T17:52:39,755 Entered build tracker: /tmp/pip-build-tracker-p5ps04hi 2026-06-26T17:52:39,756 Created temporary directory: /tmp/pip-wheel-7ihjf50d 2026-06-26T17:52:39,759 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-26T17:52:39,761 Created temporary directory: /tmp/pip-ephem-wheel-cache-g7ndm3uq 2026-06-26T17:52:39,783 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-26T17:52:39,787 2 location(s) to search for versions of oncoref: 2026-06-26T17:52:39,787 * https://pypi.org/simple/oncoref/ 2026-06-26T17:52:39,787 * https://www.piwheels.org/simple/oncoref/ 2026-06-26T17:52:39,788 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/ 2026-06-26T17:52:39,789 Getting page https://pypi.org/simple/oncoref/ 2026-06-26T17:52:39,790 Found index url https://pypi.org/simple 2026-06-26T17:52:40,018 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json 2026-06-26T17:52:40,026 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,027 Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0 2026-06-26T17:52:40,028 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,029 Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0 2026-06-26T17:52:40,030 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,031 Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0 2026-06-26T17:52:40,032 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,033 Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1 2026-06-26T17:52:40,033 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,034 Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2 2026-06-26T17:52:40,035 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,036 Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3 2026-06-26T17:52:40,037 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,038 Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4 2026-06-26T17:52:40,038 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,039 Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5 2026-06-26T17:52:40,040 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,041 Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6 2026-06-26T17:52:40,041 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,042 Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7 2026-06-26T17:52:40,043 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,044 Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8 2026-06-26T17:52:40,044 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,045 Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9 2026-06-26T17:52:40,046 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,047 Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10 2026-06-26T17:52:40,048 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,049 Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11 2026-06-26T17:52:40,049 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,050 Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12 2026-06-26T17:52:40,051 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,051 Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13 2026-06-26T17:52:40,052 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,053 Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14 2026-06-26T17:52:40,054 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ac/42/91b2b04455fb29d40afb47dc7ee2eae30218a24c4d540d95191d31f6f98e/oncoref-1.8.15-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,055 Found link https://files.pythonhosted.org/packages/26/8a/9cb4754077d37b89ed3ee3781cffdb03040d90286aaaedacba8cb238d7c3/oncoref-1.8.15.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.15 2026-06-26T17:52:40,055 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/3f/1af50bb6d208ada32a29b7e3ed29169932b97542b48e765c1d96130b7f3d/oncoref-1.8.16-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,056 Found link https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.16 2026-06-26T17:52:40,057 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/77/d24a0f29e452b83e5d6a1bfb366c72b8407bc7505d94280ca3ba609de07e/oncoref-1.8.17-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,058 Found link https://files.pythonhosted.org/packages/c1/e7/7f753f3a4b044b3f3bc8f75b75ef24df1c9b77d3f0742ee37fc243441830/oncoref-1.8.17.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.17 2026-06-26T17:52:40,059 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/04/55/5f2c1936263bdbe9a95a7c82d673eae8724b3eb1b99d4c1c33eadfc6edf5/oncoref-1.8.18-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,060 Found link https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.18 2026-06-26T17:52:40,061 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/ 2026-06-26T17:52:40,062 Getting page https://www.piwheels.org/simple/oncoref/ 2026-06-26T17:52:40,063 Found index url https://www.piwheels.org/simple 2026-06-26T17:52:40,259 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html 2026-06-26T17:52:40,266 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.15-py3-none-any.whl#sha256=4dcd40c2e5c10b8f8be0d8df8489b5f05153d465eb43ddf7f9dc158bbe6b1de3 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,266 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.14-py3-none-any.whl#sha256=ac41cf84ca97c695a15f40326738750e2762e39f366bf99300777803874b26da (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,267 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.13-py3-none-any.whl#sha256=91c3e1fa8448033a913075559a2ee2b76fcbad64e20aeb7696484a9a5619dbef (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,267 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.12-py3-none-any.whl#sha256=2a0e59477b8939fc63d4a78f31b0b793fb2f49ea2aab861d853fa8479ccf9608 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,268 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.11-py3-none-any.whl#sha256=602ac0deb73739e65dfb65105b23357a94a67eb9e1faac0880bff5203ed4a818 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,268 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.10-py3-none-any.whl#sha256=3e789fd35641073e8afc8885dcef12d74a2323c2e0c8dad7b5e369392675e83a (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,269 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.9-py3-none-any.whl#sha256=2415de57054126a885d64b626bbb12657ce55d0791a686b7aba85fd8b784d399 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,270 Skipping link: No binaries permitted for oncoref: 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https://www.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,272 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,273 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,273 Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,274 Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,274 Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,275 Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,275 Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T17:52:40,276 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/ 2026-06-26T17:52:40,277 Skipping link: not a file: https://pypi.org/simple/oncoref/ 2026-06-26T17:52:40,298 Given no hashes to check 1 links for project 'oncoref': discarding no candidates 2026-06-26T17:52:40,315 Collecting oncoref==1.8.16 2026-06-26T17:52:40,317 Created temporary directory: /tmp/pip-unpack-nkxd43jz 2026-06-26T17:52:40,546 Downloading oncoref-1.8.16.tar.gz (1.7 MB) 2026-06-26T17:52:41,248 Added oncoref==1.8.16 from https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz to build tracker '/tmp/pip-build-tracker-p5ps04hi' 2026-06-26T17:52:41,255 Created temporary directory: /tmp/pip-build-env-yc3sef3l 2026-06-26T17:52:41,259 Installing build dependencies: started 2026-06-26T17:52:41,260 Running command pip subprocess to install build dependencies 2026-06-26T17:52:42,418 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-26T17:52:42,896 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-26T17:52:42,920 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-26T17:52:44,938 Collecting setuptools>=61.0 2026-06-26T17:52:44,939 Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-26T17:52:44,956 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-26T17:52:45,191 Collecting wheel 2026-06-26T17:52:45,192 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-06-26T17:52:45,212 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-06-26T17:52:45,399 Collecting packaging>=24.0 2026-06-26T17:52:45,400 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-06-26T17:52:45,429 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-06-26T17:52:45,628 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-26T17:52:45,650 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-26T17:52:45,754 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-26T17:52:45,792 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-26T17:52:45,823 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-26T17:52:45,947 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-26T17:52:48,686 Installing collected packages: setuptools, packaging, wheel 2026-06-26T17:52:52,160 Creating /tmp/pip-build-env-yc3sef3l/overlay/local/bin 2026-06-26T17:52:52,162 changing mode of /tmp/pip-build-env-yc3sef3l/overlay/local/bin/wheel to 755 2026-06-26T17:52:52,182 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-06-26T17:52:52,466 Installing build dependencies: finished with status 'done' 2026-06-26T17:52:52,473 Getting requirements to build wheel: started 2026-06-26T17:52:52,474 Running command Getting requirements to build wheel 2026-06-26T17:52:53,157 running egg_info 2026-06-26T17:52:53,162 writing oncoref.egg-info/PKG-INFO 2026-06-26T17:52:53,168 writing dependency_links to oncoref.egg-info/dependency_links.txt 2026-06-26T17:52:53,170 writing entry points to oncoref.egg-info/entry_points.txt 2026-06-26T17:52:53,173 writing requirements to oncoref.egg-info/requires.txt 2026-06-26T17:52:53,174 writing top-level names to oncoref.egg-info/top_level.txt 2026-06-26T17:52:53,209 reading manifest file 'oncoref.egg-info/SOURCES.txt' 2026-06-26T17:52:53,218 reading manifest template 'MANIFEST.in' 2026-06-26T17:52:53,220 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression' 2026-06-26T17:52:53,221 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles' 2026-06-26T17:52:53,222 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives' 2026-06-26T17:52:53,223 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5' 2026-06-26T17:52:53,224 warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv' 2026-06-26T17:52:53,225 warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv' 2026-06-26T17:52:53,226 adding license file 'LICENSE' 2026-06-26T17:52:53,233 writing manifest file 'oncoref.egg-info/SOURCES.txt' 2026-06-26T17:52:53,331 Getting requirements to build wheel: finished with status 'done' 2026-06-26T17:52:53,334 Created temporary directory: /tmp/pip-modern-metadata-g82yeeaw 2026-06-26T17:52:53,336 Preparing metadata (pyproject.toml): started 2026-06-26T17:52:53,338 Running command Preparing metadata (pyproject.toml) 2026-06-26T17:52:54,005 running dist_info 2026-06-26T17:52:54,015 creating /tmp/pip-modern-metadata-g82yeeaw/oncoref.egg-info 2026-06-26T17:52:54,016 writing /tmp/pip-modern-metadata-g82yeeaw/oncoref.egg-info/PKG-INFO 2026-06-26T17:52:54,022 writing dependency_links to /tmp/pip-modern-metadata-g82yeeaw/oncoref.egg-info/dependency_links.txt 2026-06-26T17:52:54,024 writing entry points to /tmp/pip-modern-metadata-g82yeeaw/oncoref.egg-info/entry_points.txt 2026-06-26T17:52:54,027 writing requirements to /tmp/pip-modern-metadata-g82yeeaw/oncoref.egg-info/requires.txt 2026-06-26T17:52:54,028 writing top-level names to /tmp/pip-modern-metadata-g82yeeaw/oncoref.egg-info/top_level.txt 2026-06-26T17:52:54,029 writing manifest file '/tmp/pip-modern-metadata-g82yeeaw/oncoref.egg-info/SOURCES.txt' 2026-06-26T17:52:54,061 reading manifest file '/tmp/pip-modern-metadata-g82yeeaw/oncoref.egg-info/SOURCES.txt' 2026-06-26T17:52:54,063 reading manifest template 'MANIFEST.in' 2026-06-26T17:52:54,065 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression' 2026-06-26T17:52:54,066 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles' 2026-06-26T17:52:54,067 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives' 2026-06-26T17:52:54,068 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5' 2026-06-26T17:52:54,069 warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv' 2026-06-26T17:52:54,069 warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv' 2026-06-26T17:52:54,070 adding license file 'LICENSE' 2026-06-26T17:52:54,076 writing manifest file '/tmp/pip-modern-metadata-g82yeeaw/oncoref.egg-info/SOURCES.txt' 2026-06-26T17:52:54,077 creating '/tmp/pip-modern-metadata-g82yeeaw/oncoref-1.8.16.dist-info' 2026-06-26T17:52:54,202 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-26T17:52:54,207 Source in /tmp/pip-wheel-7ihjf50d/oncoref_c63b243373ed45c0bdbcb898b3e25056 has version 1.8.16, which satisfies requirement oncoref==1.8.16 from https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz 2026-06-26T17:52:54,208 Removed oncoref==1.8.16 from https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz from build tracker '/tmp/pip-build-tracker-p5ps04hi' 2026-06-26T17:52:54,214 Created temporary directory: /tmp/pip-unpack-bg080ttv 2026-06-26T17:52:54,214 Building wheels for collected packages: oncoref 2026-06-26T17:52:54,219 Created temporary directory: /tmp/pip-wheel-p1euwsxq 2026-06-26T17:52:54,219 Destination directory: /tmp/pip-wheel-p1euwsxq 2026-06-26T17:52:54,222 Building wheel for oncoref (pyproject.toml): started 2026-06-26T17:52:54,223 Running command Building wheel for oncoref (pyproject.toml) 2026-06-26T17:52:54,843 running bdist_wheel 2026-06-26T17:52:54,862 running build 2026-06-26T17:52:54,862 running build_py 2026-06-26T17:52:54,869 creating build/lib/oncoref 2026-06-26T17:52:54,872 copying oncoref/antigen_coverage.py -> build/lib/oncoref 2026-06-26T17:52:54,874 copying oncoref/samples.py -> build/lib/oncoref 2026-06-26T17:52:54,876 copying oncoref/coverage.py -> build/lib/oncoref 2026-06-26T17:52:54,879 copying oncoref/plots.py -> build/lib/oncoref 2026-06-26T17:52:54,882 copying oncoref/genome.py -> build/lib/oncoref 2026-06-26T17:52:54,885 copying oncoref/ici_response.py -> build/lib/oncoref 2026-06-26T17:52:54,887 copying oncoref/version.py -> build/lib/oncoref 2026-06-26T17:52:54,889 copying oncoref/cta_curation_plots.py -> build/lib/oncoref 2026-06-26T17:52:54,892 copying oncoref/cancer_types.py -> build/lib/oncoref 2026-06-26T17:52:54,896 copying oncoref/ici.py -> build/lib/oncoref 2026-06-26T17:52:54,898 copying oncoref/tmb.py -> build/lib/oncoref 2026-06-26T17:52:54,901 copying oncoref/expression_registry.py -> build/lib/oncoref 2026-06-26T17:52:54,903 copying oncoref/apd1.py -> build/lib/oncoref 2026-06-26T17:52:54,905 copying oncoref/expression.py -> build/lib/oncoref 2026-06-26T17:52:54,909 copying oncoref/cta.py -> build/lib/oncoref 2026-06-26T17:52:54,911 copying oncoref/expression_engine.py -> build/lib/oncoref 2026-06-26T17:52:54,914 copying oncoref/fusions.py -> build/lib/oncoref 2026-06-26T17:52:54,915 copying oncoref/cohorts.py -> build/lib/oncoref 2026-06-26T17:52:54,917 copying oncoref/data_manifest.py -> build/lib/oncoref 2026-06-26T17:52:54,919 copying oncoref/catalog.py -> build/lib/oncoref 2026-06-26T17:52:54,922 copying oncoref/source_matrices.py -> build/lib/oncoref 2026-06-26T17:52:54,924 copying oncoref/cli.py -> build/lib/oncoref 2026-06-26T17:52:54,926 copying oncoref/gene_ids.py -> build/lib/oncoref 2026-06-26T17:52:54,929 copying oncoref/hpa.py -> build/lib/oncoref 2026-06-26T17:52:54,931 copying oncoref/cta_peptides.py -> build/lib/oncoref 2026-06-26T17:52:54,933 copying oncoref/__init__.py -> build/lib/oncoref 2026-06-26T17:52:54,936 copying oncoref/load_dataset.py -> build/lib/oncoref 2026-06-26T17:52:54,938 copying oncoref/gene_qc.py -> build/lib/oncoref 2026-06-26T17:52:54,940 copying oncoref/proteoforms.py -> build/lib/oncoref 2026-06-26T17:52:54,943 copying oncoref/incidence.py -> build/lib/oncoref 2026-06-26T17:52:54,945 copying oncoref/cancer_genes.py -> build/lib/oncoref 2026-06-26T17:52:54,947 copying oncoref/reference_data.py -> build/lib/oncoref 2026-06-26T17:52:54,949 copying oncoref/peptides.py -> build/lib/oncoref 2026-06-26T17:52:54,952 copying oncoref/cancer_ontology.py -> build/lib/oncoref 2026-06-26T17:52:54,954 copying oncoref/data_bundle.py -> build/lib/oncoref 2026-06-26T17:52:54,956 copying oncoref/response_signatures.py -> build/lib/oncoref 2026-06-26T17:52:54,958 copying oncoref/gene_families.py -> build/lib/oncoref 2026-06-26T17:52:54,961 copying oncoref/normalization.py -> build/lib/oncoref 2026-06-26T17:52:54,964 copying oncoref/cta_coverage.py -> build/lib/oncoref 2026-06-26T17:52:54,966 copying oncoref/cta_tissues.py -> build/lib/oncoref 2026-06-26T17:52:54,968 copying oncoref/expression_builders.py -> build/lib/oncoref 2026-06-26T17:52:54,970 copying oncoref/cta_regen.py -> build/lib/oncoref 2026-06-26T17:52:54,985 creating build/lib/oncoref/data 2026-06-26T17:52:54,986 copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data 2026-06-26T17:52:54,989 copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data 2026-06-26T17:52:54,994 copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data 2026-06-26T17:52:54,996 copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data 2026-06-26T17:52:54,998 copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,002 copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,004 copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,007 copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,010 copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,013 copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,017 copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,019 copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,024 copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,028 copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,030 copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,033 copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,035 copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,037 copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,040 copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,042 copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,047 copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,049 copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,052 copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,054 copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,057 copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,063 copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,065 copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,067 copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,070 copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,072 copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,075 copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,077 copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,085 copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,088 copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,090 copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,093 copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,095 copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,097 copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,102 copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,104 copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,107 copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,109 copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,113 copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,115 copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,117 copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,120 copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,122 copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,124 copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,127 copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,131 copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,133 copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,135 copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,139 copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data 2026-06-26T17:52:55,141 copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data 2026-06-26T17:52:55,147 copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data 2026-06-26T17:52:55,158 copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data 2026-06-26T17:52:55,166 copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data 2026-06-26T17:52:55,180 installing to build/bdist.linux-armv7l/wheel 2026-06-26T17:52:55,181 running install 2026-06-26T17:52:55,204 running install_lib 2026-06-26T17:52:55,209 creating build/bdist.linux-armv7l/wheel 2026-06-26T17:52:55,212 creating build/bdist.linux-armv7l/wheel/oncoref 2026-06-26T17:52:55,214 copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,217 copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,219 copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,221 copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,224 copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,227 copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,229 copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,231 copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,233 copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,236 copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,240 copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,242 copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,244 copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,246 copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,251 copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,254 copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,256 copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,258 copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,260 copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,263 copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,266 copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,268 copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,271 copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,274 copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,277 copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,279 copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,282 copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,284 copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,286 copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,289 copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,291 copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,294 copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,298 copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,300 copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,303 copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,306 copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,308 copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,312 copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,317 copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,321 copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,326 copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,329 copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T17:52:55,334 creating build/bdist.linux-armv7l/wheel/oncoref/data 2026-06-26T17:52:55,335 copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,337 copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,373 copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,374 copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,376 copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,382 copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,385 copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,424 copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,427 copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,429 copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,432 copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,435 copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,437 copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,441 copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,444 copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,446 copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,455 copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,457 copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,459 copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,461 copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,464 copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,465 copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,470 copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,472 copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,474 copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,476 copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,479 copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,484 copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,486 copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,488 copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,490 copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,493 copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,495 copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,497 copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,500 copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,508 copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,510 copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,513 copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,515 copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,517 copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,519 copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,523 copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,525 copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,528 copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,530 copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,533 copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,535 copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,537 copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,538 copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,540 copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,543 copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,550 copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,553 copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,555 copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,558 copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,560 copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,563 copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T17:52:55,565 running install_egg_info 2026-06-26T17:52:55,574 running egg_info 2026-06-26T17:52:55,579 writing oncoref.egg-info/PKG-INFO 2026-06-26T17:52:55,584 writing dependency_links to oncoref.egg-info/dependency_links.txt 2026-06-26T17:52:55,586 writing entry points to oncoref.egg-info/entry_points.txt 2026-06-26T17:52:55,588 writing requirements to oncoref.egg-info/requires.txt 2026-06-26T17:52:55,589 writing top-level names to oncoref.egg-info/top_level.txt 2026-06-26T17:52:55,608 reading manifest file 'oncoref.egg-info/SOURCES.txt' 2026-06-26T17:52:55,617 reading manifest template 'MANIFEST.in' 2026-06-26T17:52:55,619 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression' 2026-06-26T17:52:55,620 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles' 2026-06-26T17:52:55,621 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives' 2026-06-26T17:52:55,622 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5' 2026-06-26T17:52:55,623 warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv' 2026-06-26T17:52:55,624 warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv' 2026-06-26T17:52:55,625 adding license file 'LICENSE' 2026-06-26T17:52:55,633 writing manifest file 'oncoref.egg-info/SOURCES.txt' 2026-06-26T17:52:55,635 Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.16-py3.11.egg-info 2026-06-26T17:52:55,648 running install_scripts 2026-06-26T17:52:55,663 creating build/bdist.linux-armv7l/wheel/oncoref-1.8.16.dist-info/WHEEL 2026-06-26T17:52:55,666 creating '/tmp/pip-wheel-p1euwsxq/.tmp-_yb_6a8w/oncoref-1.8.16-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-26T17:52:55,670 adding 'oncoref/__init__.py' 2026-06-26T17:52:55,671 adding 'oncoref/antigen_coverage.py' 2026-06-26T17:52:55,673 adding 'oncoref/apd1.py' 2026-06-26T17:52:55,675 adding 'oncoref/cancer_genes.py' 2026-06-26T17:52:55,676 adding 'oncoref/cancer_ontology.py' 2026-06-26T17:52:55,683 adding 'oncoref/cancer_types.py' 2026-06-26T17:52:55,686 adding 'oncoref/catalog.py' 2026-06-26T17:52:55,689 adding 'oncoref/cli.py' 2026-06-26T17:52:55,690 adding 'oncoref/cohorts.py' 2026-06-26T17:52:55,693 adding 'oncoref/coverage.py' 2026-06-26T17:52:55,696 adding 'oncoref/cta.py' 2026-06-26T17:52:55,697 adding 'oncoref/cta_coverage.py' 2026-06-26T17:52:55,699 adding 'oncoref/cta_curation_plots.py' 2026-06-26T17:52:55,700 adding 'oncoref/cta_peptides.py' 2026-06-26T17:52:55,703 adding 'oncoref/cta_regen.py' 2026-06-26T17:52:55,705 adding 'oncoref/cta_tissues.py' 2026-06-26T17:52:55,707 adding 'oncoref/data_bundle.py' 2026-06-26T17:52:55,709 adding 'oncoref/data_manifest.py' 2026-06-26T17:52:55,719 adding 'oncoref/expression.py' 2026-06-26T17:52:55,722 adding 'oncoref/expression_builders.py' 2026-06-26T17:52:55,724 adding 'oncoref/expression_engine.py' 2026-06-26T17:52:55,726 adding 'oncoref/expression_registry.py' 2026-06-26T17:52:55,728 adding 'oncoref/fusions.py' 2026-06-26T17:52:55,730 adding 'oncoref/gene_families.py' 2026-06-26T17:52:55,732 adding 'oncoref/gene_ids.py' 2026-06-26T17:52:55,734 adding 'oncoref/gene_qc.py' 2026-06-26T17:52:55,737 adding 'oncoref/genome.py' 2026-06-26T17:52:55,738 adding 'oncoref/hpa.py' 2026-06-26T17:52:55,743 adding 'oncoref/ici.py' 2026-06-26T17:52:55,744 adding 'oncoref/ici_response.py' 2026-06-26T17:52:55,746 adding 'oncoref/incidence.py' 2026-06-26T17:52:55,748 adding 'oncoref/load_dataset.py' 2026-06-26T17:52:55,752 adding 'oncoref/normalization.py' 2026-06-26T17:52:55,755 adding 'oncoref/peptides.py' 2026-06-26T17:52:55,762 adding 'oncoref/plots.py' 2026-06-26T17:52:55,765 adding 'oncoref/proteoforms.py' 2026-06-26T17:52:55,767 adding 'oncoref/reference_data.py' 2026-06-26T17:52:55,769 adding 'oncoref/response_signatures.py' 2026-06-26T17:52:55,770 adding 'oncoref/samples.py' 2026-06-26T17:52:55,771 adding 'oncoref/source_matrices.py' 2026-06-26T17:52:55,773 adding 'oncoref/tmb.py' 2026-06-26T17:52:55,774 adding 'oncoref/version.py' 2026-06-26T17:52:55,778 adding 'oncoref/data/cancer-apd1-response.csv' 2026-06-26T17:52:55,779 adding 'oncoref/data/cancer-code-burden-map.csv' 2026-06-26T17:52:55,780 adding 'oncoref/data/cancer-cohort-aggregates.csv' 2026-06-26T17:52:55,785 adding 'oncoref/data/cancer-driver-genes.csv' 2026-06-26T17:52:55,788 adding 'oncoref/data/cancer-driver-variants.csv' 2026-06-26T17:52:55,790 adding 'oncoref/data/cancer-expression-source-candidates.csv' 2026-06-26T17:52:55,792 adding 'oncoref/data/cancer-frameshift-burden.csv' 2026-06-26T17:52:55,795 adding 'oncoref/data/cancer-fusions.csv' 2026-06-26T17:52:55,812 adding 'oncoref/data/cancer-ici-response-estimates.csv' 2026-06-26T17:52:55,816 adding 'oncoref/data/cancer-ici-response.csv' 2026-06-26T17:52:55,818 adding 'oncoref/data/cancer-incidence-mortality.csv' 2026-06-26T17:52:55,832 adding 'oncoref/data/cancer-key-genes.csv' 2026-06-26T17:52:55,834 adding 'oncoref/data/cancer-lineage-group-overrides.csv' 2026-06-26T17:52:55,836 adding 'oncoref/data/cancer-lineage-groups.csv' 2026-06-26T17:52:55,837 adding 'oncoref/data/cancer-normal-tissue-map.csv' 2026-06-26T17:52:55,866 adding 'oncoref/data/cancer-reference-expression-samples.csv.gz' 2026-06-26T17:52:55,869 adding 'oncoref/data/cancer-response-signatures.csv' 2026-06-26T17:52:55,870 adding 'oncoref/data/cancer-subtype-groupings.csv' 2026-06-26T17:52:55,882 adding 'oncoref/data/cancer-testis-antigens.csv' 2026-06-26T17:52:55,885 adding 'oncoref/data/cancer-tmb.csv' 2026-06-26T17:52:55,887 adding 'oncoref/data/cancer-type-genes.csv' 2026-06-26T17:52:55,891 adding 'oncoref/data/cancer-type-registry.csv' 2026-06-26T17:52:55,893 adding 'oncoref/data/cancer-viral-antigens.csv' 2026-06-26T17:52:55,945 adding 'oncoref/data/canonical-gene-space.csv.gz' 2026-06-26T17:52:55,950 adding 'oncoref/data/cdna-identical-gene-groups.csv' 2026-06-26T17:52:55,954 adding 'oncoref/data/censored-gene-reference-tpm.csv' 2026-06-26T17:52:55,956 adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv' 2026-06-26T17:52:55,966 adding 'oncoref/data/clean-tpm-censored-genes.csv' 2026-06-26T17:52:55,969 adding 'oncoref/data/cohort-registry.csv' 2026-06-26T17:52:55,970 adding 'oncoref/data/cta-candidate-references.csv' 2026-06-26T17:52:55,971 adding 'oncoref/data/cta-ihc-unreliable.csv' 2026-06-26T17:52:55,973 adding 'oncoref/data/degenerate-subtype-pairs.csv' 2026-06-26T17:52:55,974 adding 'oncoref/data/disease-state-rules.csv' 2026-06-26T17:52:56,001 adding 'oncoref/data/ensembl-id-aliases.csv' 2026-06-26T17:52:56,007 adding 'oncoref/data/expression_sources.yaml' 2026-06-26T17:52:56,009 adding 'oncoref/data/extra-tx-mappings.csv' 2026-06-26T17:52:56,010 adding 'oncoref/data/family-burden-map.csv' 2026-06-26T17:52:56,011 adding 'oncoref/data/fusion-expression-effects.csv' 2026-06-26T17:52:56,013 adding 'oncoref/data/fusion-surrogate-expression.csv' 2026-06-26T17:52:56,014 adding 'oncoref/data/hemoglobin-genes.csv' 2026-06-26T17:52:56,015 adding 'oncoref/data/histone-genes.csv' 2026-06-26T17:52:56,017 adding 'oncoref/data/housekeeping-genes.csv' 2026-06-26T17:52:56,018 adding 'oncoref/data/mitochondrial-genes.csv' 2026-06-26T17:52:56,019 adding 'oncoref/data/narrative-gene-sets.csv' 2026-06-26T17:52:56,060 adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz' 2026-06-26T17:52:56,063 adding 'oncoref/data/nuclear-retained-lncrnas.csv' 2026-06-26T17:52:56,065 adding 'oncoref/data/numt-pseudogenes.csv' 2026-06-26T17:52:56,066 adding 'oncoref/data/proteoform-collapse-overrides.csv' 2026-06-26T17:52:56,069 adding 'oncoref/data/proteoform-groups-genome.csv' 2026-06-26T17:52:56,071 adding 'oncoref/data/proteoform-groups.csv' 2026-06-26T17:52:56,073 adding 'oncoref/data/rare-cancer-fusion-rules.csv' 2026-06-26T17:52:56,074 adding 'oncoref/data/ribosomal-protein-genes.csv' 2026-06-26T17:52:56,081 adding 'oncoref/data/ribosomal-protein-pseudogenes.csv' 2026-06-26T17:52:56,083 adding 'oncoref/data/rrna-and-pseudogenes.csv' 2026-06-26T17:52:56,102 adding 'oncoref/data/small-noncoding-rnas.csv' 2026-06-26T17:52:56,104 adding 'oncoref/data/source-matrices.csv' 2026-06-26T17:52:56,105 adding 'oncoref/data/tissue-burden-map.csv' 2026-06-26T17:52:56,109 adding 'oncoref-1.8.16.dist-info/licenses/LICENSE' 2026-06-26T17:52:56,110 adding 'oncoref-1.8.16.dist-info/METADATA' 2026-06-26T17:52:56,111 adding 'oncoref-1.8.16.dist-info/WHEEL' 2026-06-26T17:52:56,112 adding 'oncoref-1.8.16.dist-info/entry_points.txt' 2026-06-26T17:52:56,113 adding 'oncoref-1.8.16.dist-info/top_level.txt' 2026-06-26T17:52:56,115 adding 'oncoref-1.8.16.dist-info/RECORD' 2026-06-26T17:52:56,135 removing build/bdist.linux-armv7l/wheel 2026-06-26T17:52:56,257 Building wheel for oncoref (pyproject.toml): finished with status 'done' 2026-06-26T17:52:56,303 Created wheel for oncoref: filename=oncoref-1.8.16-py3-none-any.whl size=1665823 sha256=9defcd77c3360e0675a10c0b8de4a1784c19f227a985079b95e21e462de63e97 2026-06-26T17:52:56,304 Stored in directory: /tmp/pip-ephem-wheel-cache-g7ndm3uq/wheels/c6/da/66/88ddd96fbf644b57dd61eab04c9165bc954eda7c456fd65552 2026-06-26T17:52:56,319 Successfully built oncoref 2026-06-26T17:52:56,371 Removed build tracker: '/tmp/pip-build-tracker-p5ps04hi'