2026-06-26T18:28:21,713 Created temporary directory: /tmp/pip-ephem-wheel-cache-8m01mwcz 2026-06-26T18:28:21,715 Created temporary directory: /tmp/pip-build-tracker-50elg035 2026-06-26T18:28:21,716 Initialized build tracking at /tmp/pip-build-tracker-50elg035 2026-06-26T18:28:21,716 Created build tracker: /tmp/pip-build-tracker-50elg035 2026-06-26T18:28:21,716 Entered build tracker: /tmp/pip-build-tracker-50elg035 2026-06-26T18:28:21,717 Created temporary directory: /tmp/pip-wheel-sa1sthjj 2026-06-26T18:28:21,720 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-26T18:28:21,723 Created temporary directory: /tmp/pip-ephem-wheel-cache-3oboxbtg 2026-06-26T18:28:21,745 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-26T18:28:21,748 2 location(s) to search for versions of oncoref: 2026-06-26T18:28:21,748 * https://pypi.org/simple/oncoref/ 2026-06-26T18:28:21,748 * https://www.piwheels.org/simple/oncoref/ 2026-06-26T18:28:21,749 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/ 2026-06-26T18:28:21,750 Getting page https://pypi.org/simple/oncoref/ 2026-06-26T18:28:21,751 Found index url https://pypi.org/simple 2026-06-26T18:28:21,903 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json 2026-06-26T18:28:21,912 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,913 Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0 2026-06-26T18:28:21,913 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,915 Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0 2026-06-26T18:28:21,915 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,916 Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0 2026-06-26T18:28:21,917 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,918 Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1 2026-06-26T18:28:21,919 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,919 Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2 2026-06-26T18:28:21,920 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,921 Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3 2026-06-26T18:28:21,922 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,923 Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4 2026-06-26T18:28:21,924 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,925 Found link 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(requires-python:>=3.9) 2026-06-26T18:28:21,928 Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7 2026-06-26T18:28:21,928 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,929 Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8 2026-06-26T18:28:21,930 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,930 Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9 2026-06-26T18:28:21,931 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,932 Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10 2026-06-26T18:28:21,933 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,934 Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11 2026-06-26T18:28:21,934 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,935 Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12 2026-06-26T18:28:21,935 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,936 Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13 2026-06-26T18:28:21,937 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,938 Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14 2026-06-26T18:28:21,938 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ac/42/91b2b04455fb29d40afb47dc7ee2eae30218a24c4d540d95191d31f6f98e/oncoref-1.8.15-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,939 Found link https://files.pythonhosted.org/packages/26/8a/9cb4754077d37b89ed3ee3781cffdb03040d90286aaaedacba8cb238d7c3/oncoref-1.8.15.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.15 2026-06-26T18:28:21,940 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/3f/1af50bb6d208ada32a29b7e3ed29169932b97542b48e765c1d96130b7f3d/oncoref-1.8.16-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,941 Found link https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.16 2026-06-26T18:28:21,941 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/77/d24a0f29e452b83e5d6a1bfb366c72b8407bc7505d94280ca3ba609de07e/oncoref-1.8.17-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,942 Found link https://files.pythonhosted.org/packages/c1/e7/7f753f3a4b044b3f3bc8f75b75ef24df1c9b77d3f0742ee37fc243441830/oncoref-1.8.17.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.17 2026-06-26T18:28:21,943 Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/04/55/5f2c1936263bdbe9a95a7c82d673eae8724b3eb1b99d4c1c33eadfc6edf5/oncoref-1.8.18-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:21,944 Found link https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.18 2026-06-26T18:28:21,945 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/ 2026-06-26T18:28:21,945 Getting page https://www.piwheels.org/simple/oncoref/ 2026-06-26T18:28:21,946 Found index url https://www.piwheels.org/simple 2026-06-26T18:28:22,181 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html 2026-06-26T18:28:22,187 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.17-py3-none-any.whl#sha256=5fa3e3356c1574425d42aebe7d135c933ff623b539736554634a762eeaab4a29 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,188 Skipping link: No binaries permitted for oncoref: 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https://www.piwheels.org/simple/oncoref/oncoref-1.8.13-py3-none-any.whl#sha256=91c3e1fa8448033a913075559a2ee2b76fcbad64e20aeb7696484a9a5619dbef (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,190 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.12-py3-none-any.whl#sha256=2a0e59477b8939fc63d4a78f31b0b793fb2f49ea2aab861d853fa8479ccf9608 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,191 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.11-py3-none-any.whl#sha256=602ac0deb73739e65dfb65105b23357a94a67eb9e1faac0880bff5203ed4a818 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,191 Skipping link: No binaries permitted for oncoref: 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https://www.piwheels.org/simple/oncoref/oncoref-1.8.7-py3-none-any.whl#sha256=84f80af8afa25d02579e67983b74fd2e515df1ce6d0cb602ecb6808e994f8f63 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,194 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.6-py3-none-any.whl#sha256=460f281fc846e410a5992e3a87193febdfac8bf81f3e5497a5e5d72ae58176bf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,194 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,195 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,195 Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,196 Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,196 Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,197 Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,197 Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,198 Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9) 2026-06-26T18:28:22,198 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/ 2026-06-26T18:28:22,199 Skipping link: not a file: https://pypi.org/simple/oncoref/ 2026-06-26T18:28:22,220 Given no hashes to check 1 links for project 'oncoref': discarding no candidates 2026-06-26T18:28:22,238 Collecting oncoref==1.8.18 2026-06-26T18:28:22,240 Created temporary directory: /tmp/pip-unpack-jgjlovwx 2026-06-26T18:28:22,469 Downloading oncoref-1.8.18.tar.gz (1.7 MB) 2026-06-26T18:28:23,211 Added oncoref==1.8.18 from https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz to build tracker '/tmp/pip-build-tracker-50elg035' 2026-06-26T18:28:23,218 Created temporary directory: /tmp/pip-build-env-ycahb8k9 2026-06-26T18:28:23,223 Installing build dependencies: started 2026-06-26T18:28:23,224 Running command pip subprocess to install build dependencies 2026-06-26T18:28:24,573 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-06-26T18:28:25,035 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-26T18:28:25,058 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-26T18:28:27,015 Collecting setuptools>=61.0 2026-06-26T18:28:27,016 Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata 2026-06-26T18:28:27,031 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB) 2026-06-26T18:28:27,313 Collecting wheel 2026-06-26T18:28:27,313 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-06-26T18:28:27,331 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-06-26T18:28:27,527 Collecting packaging>=24.0 2026-06-26T18:28:27,528 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-06-26T18:28:27,540 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-06-26T18:28:27,729 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-26T18:28:27,752 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-26T18:28:27,852 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-26T18:28:27,888 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-06-26T18:28:27,919 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-06-26T18:28:28,002 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-06-26T18:28:30,756 Installing collected packages: setuptools, packaging, wheel 2026-06-26T18:28:34,175 Creating /tmp/pip-build-env-ycahb8k9/overlay/local/bin 2026-06-26T18:28:34,178 changing mode of /tmp/pip-build-env-ycahb8k9/overlay/local/bin/wheel to 755 2026-06-26T18:28:34,198 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-06-26T18:28:34,482 Installing build dependencies: finished with status 'done' 2026-06-26T18:28:34,489 Getting requirements to build wheel: started 2026-06-26T18:28:34,490 Running command Getting requirements to build wheel 2026-06-26T18:28:35,174 running egg_info 2026-06-26T18:28:35,179 writing oncoref.egg-info/PKG-INFO 2026-06-26T18:28:35,185 writing dependency_links to oncoref.egg-info/dependency_links.txt 2026-06-26T18:28:35,187 writing entry points to oncoref.egg-info/entry_points.txt 2026-06-26T18:28:35,190 writing requirements to oncoref.egg-info/requires.txt 2026-06-26T18:28:35,191 writing top-level names to oncoref.egg-info/top_level.txt 2026-06-26T18:28:35,225 reading manifest file 'oncoref.egg-info/SOURCES.txt' 2026-06-26T18:28:35,234 reading manifest template 'MANIFEST.in' 2026-06-26T18:28:35,236 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression' 2026-06-26T18:28:35,237 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles' 2026-06-26T18:28:35,239 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives' 2026-06-26T18:28:35,240 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5' 2026-06-26T18:28:35,241 warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv' 2026-06-26T18:28:35,242 warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv' 2026-06-26T18:28:35,243 adding license file 'LICENSE' 2026-06-26T18:28:35,251 writing manifest file 'oncoref.egg-info/SOURCES.txt' 2026-06-26T18:28:35,349 Getting requirements to build wheel: finished with status 'done' 2026-06-26T18:28:35,352 Created temporary directory: /tmp/pip-modern-metadata-04zs27qu 2026-06-26T18:28:35,355 Preparing metadata (pyproject.toml): started 2026-06-26T18:28:35,356 Running command Preparing metadata (pyproject.toml) 2026-06-26T18:28:35,999 running dist_info 2026-06-26T18:28:36,009 creating /tmp/pip-modern-metadata-04zs27qu/oncoref.egg-info 2026-06-26T18:28:36,010 writing /tmp/pip-modern-metadata-04zs27qu/oncoref.egg-info/PKG-INFO 2026-06-26T18:28:36,015 writing dependency_links to /tmp/pip-modern-metadata-04zs27qu/oncoref.egg-info/dependency_links.txt 2026-06-26T18:28:36,017 writing entry points to /tmp/pip-modern-metadata-04zs27qu/oncoref.egg-info/entry_points.txt 2026-06-26T18:28:36,019 writing requirements to /tmp/pip-modern-metadata-04zs27qu/oncoref.egg-info/requires.txt 2026-06-26T18:28:36,020 writing top-level names to /tmp/pip-modern-metadata-04zs27qu/oncoref.egg-info/top_level.txt 2026-06-26T18:28:36,022 writing manifest file '/tmp/pip-modern-metadata-04zs27qu/oncoref.egg-info/SOURCES.txt' 2026-06-26T18:28:36,054 reading manifest file '/tmp/pip-modern-metadata-04zs27qu/oncoref.egg-info/SOURCES.txt' 2026-06-26T18:28:36,056 reading manifest template 'MANIFEST.in' 2026-06-26T18:28:36,057 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression' 2026-06-26T18:28:36,058 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles' 2026-06-26T18:28:36,059 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives' 2026-06-26T18:28:36,060 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5' 2026-06-26T18:28:36,061 warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv' 2026-06-26T18:28:36,062 warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv' 2026-06-26T18:28:36,063 adding license file 'LICENSE' 2026-06-26T18:28:36,069 writing manifest file '/tmp/pip-modern-metadata-04zs27qu/oncoref.egg-info/SOURCES.txt' 2026-06-26T18:28:36,070 creating '/tmp/pip-modern-metadata-04zs27qu/oncoref-1.8.18.dist-info' 2026-06-26T18:28:36,197 Preparing metadata (pyproject.toml): finished with status 'done' 2026-06-26T18:28:36,202 Source in /tmp/pip-wheel-sa1sthjj/oncoref_4eeb22d981b84f0eaf31614541877ae2 has version 1.8.18, which satisfies requirement oncoref==1.8.18 from https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz 2026-06-26T18:28:36,203 Removed oncoref==1.8.18 from https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz from build tracker '/tmp/pip-build-tracker-50elg035' 2026-06-26T18:28:36,209 Created temporary directory: /tmp/pip-unpack-nxqabrgn 2026-06-26T18:28:36,209 Building wheels for collected packages: oncoref 2026-06-26T18:28:36,214 Created temporary directory: /tmp/pip-wheel-1xemf85j 2026-06-26T18:28:36,215 Destination directory: /tmp/pip-wheel-1xemf85j 2026-06-26T18:28:36,217 Building wheel for oncoref (pyproject.toml): started 2026-06-26T18:28:36,218 Running command Building wheel for oncoref (pyproject.toml) 2026-06-26T18:28:36,842 running bdist_wheel 2026-06-26T18:28:36,860 running build 2026-06-26T18:28:36,860 running build_py 2026-06-26T18:28:36,867 creating build/lib/oncoref 2026-06-26T18:28:36,871 copying oncoref/cta.py -> build/lib/oncoref 2026-06-26T18:28:36,874 copying oncoref/cohorts.py -> build/lib/oncoref 2026-06-26T18:28:36,876 copying oncoref/expression.py -> build/lib/oncoref 2026-06-26T18:28:36,879 copying oncoref/response_signatures.py -> build/lib/oncoref 2026-06-26T18:28:36,882 copying oncoref/data_bundle.py -> build/lib/oncoref 2026-06-26T18:28:36,884 copying oncoref/tmb.py -> build/lib/oncoref 2026-06-26T18:28:36,886 copying oncoref/cta_tissues.py -> build/lib/oncoref 2026-06-26T18:28:36,888 copying oncoref/gene_ids.py -> build/lib/oncoref 2026-06-26T18:28:36,890 copying oncoref/source_matrices.py -> build/lib/oncoref 2026-06-26T18:28:36,892 copying oncoref/gene_qc.py -> build/lib/oncoref 2026-06-26T18:28:36,895 copying oncoref/cli.py -> build/lib/oncoref 2026-06-26T18:28:36,898 copying oncoref/peptides.py -> build/lib/oncoref 2026-06-26T18:28:36,900 copying oncoref/expression_builders.py -> build/lib/oncoref 2026-06-26T18:28:36,903 copying oncoref/proteoforms.py -> build/lib/oncoref 2026-06-26T18:28:36,905 copying oncoref/samples.py -> build/lib/oncoref 2026-06-26T18:28:36,907 copying oncoref/cancer_genes.py -> build/lib/oncoref 2026-06-26T18:28:36,909 copying oncoref/expression_engine.py -> build/lib/oncoref 2026-06-26T18:28:36,911 copying oncoref/ici_response.py -> build/lib/oncoref 2026-06-26T18:28:36,914 copying oncoref/reference_data.py -> build/lib/oncoref 2026-06-26T18:28:36,916 copying oncoref/normalization.py -> build/lib/oncoref 2026-06-26T18:28:36,919 copying oncoref/apd1.py -> build/lib/oncoref 2026-06-26T18:28:36,921 copying oncoref/catalog.py -> build/lib/oncoref 2026-06-26T18:28:36,923 copying oncoref/antigen_coverage.py -> build/lib/oncoref 2026-06-26T18:28:36,925 copying oncoref/plots.py -> build/lib/oncoref 2026-06-26T18:28:36,929 copying oncoref/data_manifest.py -> build/lib/oncoref 2026-06-26T18:28:36,931 copying oncoref/hpa.py -> build/lib/oncoref 2026-06-26T18:28:36,933 copying oncoref/genome.py -> build/lib/oncoref 2026-06-26T18:28:36,936 copying oncoref/incidence.py -> build/lib/oncoref 2026-06-26T18:28:36,938 copying oncoref/cancer_types.py -> build/lib/oncoref 2026-06-26T18:28:36,942 copying oncoref/cta_curation_plots.py -> build/lib/oncoref 2026-06-26T18:28:36,944 copying oncoref/load_dataset.py -> build/lib/oncoref 2026-06-26T18:28:36,946 copying oncoref/cta_regen.py -> build/lib/oncoref 2026-06-26T18:28:36,949 copying oncoref/__init__.py -> build/lib/oncoref 2026-06-26T18:28:36,952 copying oncoref/cta_coverage.py -> build/lib/oncoref 2026-06-26T18:28:36,954 copying oncoref/fusions.py -> build/lib/oncoref 2026-06-26T18:28:36,957 copying oncoref/coverage.py -> build/lib/oncoref 2026-06-26T18:28:36,960 copying oncoref/version.py -> build/lib/oncoref 2026-06-26T18:28:36,962 copying oncoref/cancer_ontology.py -> build/lib/oncoref 2026-06-26T18:28:36,963 copying oncoref/ici.py -> build/lib/oncoref 2026-06-26T18:28:36,966 copying oncoref/cta_peptides.py -> build/lib/oncoref 2026-06-26T18:28:36,968 copying oncoref/expression_registry.py -> build/lib/oncoref 2026-06-26T18:28:36,970 copying oncoref/gene_families.py -> build/lib/oncoref 2026-06-26T18:28:36,985 creating build/lib/oncoref/data 2026-06-26T18:28:36,986 copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data 2026-06-26T18:28:36,989 copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data 2026-06-26T18:28:36,992 copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data 2026-06-26T18:28:36,995 copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data 2026-06-26T18:28:36,997 copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,000 copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,003 copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,006 copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,011 copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,016 copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,019 copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,021 copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,024 copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,027 copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,031 copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,033 copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,036 copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,038 copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,041 copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,043 copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,045 copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,048 copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,051 copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,053 copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,056 copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,061 copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,064 copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,067 copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,069 copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,072 copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,077 copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,080 copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,083 copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,085 copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,088 copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,090 copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,094 copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,096 copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,099 copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,101 copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,104 copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,106 copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,108 copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,110 copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,121 copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,123 copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,125 copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,127 copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,129 copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,132 copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,140 copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,144 copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,146 copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data 2026-06-26T18:28:37,148 copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data 2026-06-26T18:28:37,159 copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data 2026-06-26T18:28:37,167 copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data 2026-06-26T18:28:37,173 copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data 2026-06-26T18:28:37,188 installing to build/bdist.linux-armv7l/wheel 2026-06-26T18:28:37,188 running install 2026-06-26T18:28:37,211 running install_lib 2026-06-26T18:28:37,216 creating build/bdist.linux-armv7l/wheel 2026-06-26T18:28:37,219 creating build/bdist.linux-armv7l/wheel/oncoref 2026-06-26T18:28:37,221 copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,223 copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,225 copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,229 copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,231 copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,233 copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,235 copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,237 copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,240 copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,242 copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,244 copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,247 copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,250 copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,252 copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,255 copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,257 copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,259 copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,262 copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,264 copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,267 copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,270 copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,272 copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,274 copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,276 copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,280 copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,284 copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,287 copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,289 copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,291 copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,294 copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,298 creating build/bdist.linux-armv7l/wheel/oncoref/data 2026-06-26T18:28:37,299 copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,301 copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,303 copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,306 copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,308 copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,311 copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,314 copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,316 copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,318 copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,322 copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,326 copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,329 copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,330 copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,333 copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,335 copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,345 copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,347 copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,349 copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,351 copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,353 copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,362 copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,364 copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,366 copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,368 copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,371 copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,374 copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,376 copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,379 copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,383 copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,386 copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,388 copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,390 copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,392 copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,397 copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,399 copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,406 copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,408 copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,411 copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,412 copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,414 copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,417 copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,419 copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,422 copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,423 copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,425 copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,427 copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,429 copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,430 copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,438 copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,440 copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,442 copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,444 copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,446 copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,447 copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,455 copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,458 copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,460 copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-06-26T18:28:37,462 copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,465 copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,467 copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,470 copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,472 copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,474 copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,477 copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,479 copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,481 copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,484 copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,486 copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,488 copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-06-26T18:28:37,491 running install_egg_info 2026-06-26T18:28:37,500 running egg_info 2026-06-26T18:28:37,505 writing oncoref.egg-info/PKG-INFO 2026-06-26T18:28:37,511 writing dependency_links to oncoref.egg-info/dependency_links.txt 2026-06-26T18:28:37,512 writing entry points to oncoref.egg-info/entry_points.txt 2026-06-26T18:28:37,515 writing requirements to oncoref.egg-info/requires.txt 2026-06-26T18:28:37,516 writing top-level names to oncoref.egg-info/top_level.txt 2026-06-26T18:28:37,534 reading manifest file 'oncoref.egg-info/SOURCES.txt' 2026-06-26T18:28:37,543 reading manifest template 'MANIFEST.in' 2026-06-26T18:28:37,545 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression' 2026-06-26T18:28:37,546 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles' 2026-06-26T18:28:37,547 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives' 2026-06-26T18:28:37,549 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5' 2026-06-26T18:28:37,550 warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv' 2026-06-26T18:28:37,551 warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv' 2026-06-26T18:28:37,551 adding license file 'LICENSE' 2026-06-26T18:28:37,559 writing manifest file 'oncoref.egg-info/SOURCES.txt' 2026-06-26T18:28:37,561 Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.18-py3.11.egg-info 2026-06-26T18:28:37,574 running install_scripts 2026-06-26T18:28:37,589 creating build/bdist.linux-armv7l/wheel/oncoref-1.8.18.dist-info/WHEEL 2026-06-26T18:28:37,592 creating '/tmp/pip-wheel-1xemf85j/.tmp-0qoeyh5x/oncoref-1.8.18-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-26T18:28:37,596 adding 'oncoref/__init__.py' 2026-06-26T18:28:37,597 adding 'oncoref/antigen_coverage.py' 2026-06-26T18:28:37,599 adding 'oncoref/apd1.py' 2026-06-26T18:28:37,601 adding 'oncoref/cancer_genes.py' 2026-06-26T18:28:37,603 adding 'oncoref/cancer_ontology.py' 2026-06-26T18:28:37,610 adding 'oncoref/cancer_types.py' 2026-06-26T18:28:37,612 adding 'oncoref/catalog.py' 2026-06-26T18:28:37,615 adding 'oncoref/cli.py' 2026-06-26T18:28:37,617 adding 'oncoref/cohorts.py' 2026-06-26T18:28:37,620 adding 'oncoref/coverage.py' 2026-06-26T18:28:37,623 adding 'oncoref/cta.py' 2026-06-26T18:28:37,625 adding 'oncoref/cta_coverage.py' 2026-06-26T18:28:37,627 adding 'oncoref/cta_curation_plots.py' 2026-06-26T18:28:37,628 adding 'oncoref/cta_peptides.py' 2026-06-26T18:28:37,631 adding 'oncoref/cta_regen.py' 2026-06-26T18:28:37,633 adding 'oncoref/cta_tissues.py' 2026-06-26T18:28:37,636 adding 'oncoref/data_bundle.py' 2026-06-26T18:28:37,638 adding 'oncoref/data_manifest.py' 2026-06-26T18:28:37,648 adding 'oncoref/expression.py' 2026-06-26T18:28:37,651 adding 'oncoref/expression_builders.py' 2026-06-26T18:28:37,653 adding 'oncoref/expression_engine.py' 2026-06-26T18:28:37,655 adding 'oncoref/expression_registry.py' 2026-06-26T18:28:37,656 adding 'oncoref/fusions.py' 2026-06-26T18:28:37,659 adding 'oncoref/gene_families.py' 2026-06-26T18:28:37,661 adding 'oncoref/gene_ids.py' 2026-06-26T18:28:37,662 adding 'oncoref/gene_qc.py' 2026-06-26T18:28:37,665 adding 'oncoref/genome.py' 2026-06-26T18:28:37,667 adding 'oncoref/hpa.py' 2026-06-26T18:28:37,671 adding 'oncoref/ici.py' 2026-06-26T18:28:37,672 adding 'oncoref/ici_response.py' 2026-06-26T18:28:37,674 adding 'oncoref/incidence.py' 2026-06-26T18:28:37,676 adding 'oncoref/load_dataset.py' 2026-06-26T18:28:37,680 adding 'oncoref/normalization.py' 2026-06-26T18:28:37,682 adding 'oncoref/peptides.py' 2026-06-26T18:28:37,689 adding 'oncoref/plots.py' 2026-06-26T18:28:37,692 adding 'oncoref/proteoforms.py' 2026-06-26T18:28:37,694 adding 'oncoref/reference_data.py' 2026-06-26T18:28:37,695 adding 'oncoref/response_signatures.py' 2026-06-26T18:28:37,697 adding 'oncoref/samples.py' 2026-06-26T18:28:37,698 adding 'oncoref/source_matrices.py' 2026-06-26T18:28:37,700 adding 'oncoref/tmb.py' 2026-06-26T18:28:37,701 adding 'oncoref/version.py' 2026-06-26T18:28:37,704 adding 'oncoref/data/cancer-apd1-response.csv' 2026-06-26T18:28:37,706 adding 'oncoref/data/cancer-code-burden-map.csv' 2026-06-26T18:28:37,707 adding 'oncoref/data/cancer-cohort-aggregates.csv' 2026-06-26T18:28:37,712 adding 'oncoref/data/cancer-driver-genes.csv' 2026-06-26T18:28:37,715 adding 'oncoref/data/cancer-driver-variants.csv' 2026-06-26T18:28:37,717 adding 'oncoref/data/cancer-expression-source-candidates.csv' 2026-06-26T18:28:37,718 adding 'oncoref/data/cancer-frameshift-burden.csv' 2026-06-26T18:28:37,722 adding 'oncoref/data/cancer-fusions.csv' 2026-06-26T18:28:37,739 adding 'oncoref/data/cancer-ici-response-estimates.csv' 2026-06-26T18:28:37,744 adding 'oncoref/data/cancer-ici-response.csv' 2026-06-26T18:28:37,745 adding 'oncoref/data/cancer-incidence-mortality.csv' 2026-06-26T18:28:37,760 adding 'oncoref/data/cancer-key-genes.csv' 2026-06-26T18:28:37,762 adding 'oncoref/data/cancer-lineage-group-overrides.csv' 2026-06-26T18:28:37,763 adding 'oncoref/data/cancer-lineage-groups.csv' 2026-06-26T18:28:37,765 adding 'oncoref/data/cancer-normal-tissue-map.csv' 2026-06-26T18:28:37,793 adding 'oncoref/data/cancer-reference-expression-samples.csv.gz' 2026-06-26T18:28:37,796 adding 'oncoref/data/cancer-response-signatures.csv' 2026-06-26T18:28:37,798 adding 'oncoref/data/cancer-subtype-groupings.csv' 2026-06-26T18:28:37,809 adding 'oncoref/data/cancer-testis-antigens.csv' 2026-06-26T18:28:37,813 adding 'oncoref/data/cancer-tmb.csv' 2026-06-26T18:28:37,815 adding 'oncoref/data/cancer-type-genes.csv' 2026-06-26T18:28:37,819 adding 'oncoref/data/cancer-type-registry.csv' 2026-06-26T18:28:37,821 adding 'oncoref/data/cancer-viral-antigens.csv' 2026-06-26T18:28:37,873 adding 'oncoref/data/canonical-gene-space.csv.gz' 2026-06-26T18:28:37,878 adding 'oncoref/data/cdna-identical-gene-groups.csv' 2026-06-26T18:28:37,882 adding 'oncoref/data/censored-gene-reference-tpm.csv' 2026-06-26T18:28:37,884 adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv' 2026-06-26T18:28:37,895 adding 'oncoref/data/clean-tpm-censored-genes.csv' 2026-06-26T18:28:37,897 adding 'oncoref/data/cohort-registry.csv' 2026-06-26T18:28:37,898 adding 'oncoref/data/cta-candidate-references.csv' 2026-06-26T18:28:37,899 adding 'oncoref/data/cta-ihc-unreliable.csv' 2026-06-26T18:28:37,901 adding 'oncoref/data/degenerate-subtype-pairs.csv' 2026-06-26T18:28:37,902 adding 'oncoref/data/disease-state-rules.csv' 2026-06-26T18:28:37,929 adding 'oncoref/data/ensembl-id-aliases.csv' 2026-06-26T18:28:37,935 adding 'oncoref/data/expression_sources.yaml' 2026-06-26T18:28:37,937 adding 'oncoref/data/extra-tx-mappings.csv' 2026-06-26T18:28:37,938 adding 'oncoref/data/family-burden-map.csv' 2026-06-26T18:28:37,940 adding 'oncoref/data/fusion-expression-effects.csv' 2026-06-26T18:28:37,942 adding 'oncoref/data/fusion-surrogate-expression.csv' 2026-06-26T18:28:37,943 adding 'oncoref/data/hemoglobin-genes.csv' 2026-06-26T18:28:37,944 adding 'oncoref/data/histone-genes.csv' 2026-06-26T18:28:37,946 adding 'oncoref/data/housekeeping-genes.csv' 2026-06-26T18:28:37,947 adding 'oncoref/data/mitochondrial-genes.csv' 2026-06-26T18:28:37,948 adding 'oncoref/data/narrative-gene-sets.csv' 2026-06-26T18:28:37,988 adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz' 2026-06-26T18:28:37,992 adding 'oncoref/data/nuclear-retained-lncrnas.csv' 2026-06-26T18:28:37,994 adding 'oncoref/data/numt-pseudogenes.csv' 2026-06-26T18:28:37,995 adding 'oncoref/data/proteoform-collapse-overrides.csv' 2026-06-26T18:28:37,998 adding 'oncoref/data/proteoform-groups-genome.csv' 2026-06-26T18:28:38,000 adding 'oncoref/data/proteoform-groups.csv' 2026-06-26T18:28:38,002 adding 'oncoref/data/rare-cancer-fusion-rules.csv' 2026-06-26T18:28:38,003 adding 'oncoref/data/ribosomal-protein-genes.csv' 2026-06-26T18:28:38,009 adding 'oncoref/data/ribosomal-protein-pseudogenes.csv' 2026-06-26T18:28:38,012 adding 'oncoref/data/rrna-and-pseudogenes.csv' 2026-06-26T18:28:38,031 adding 'oncoref/data/small-noncoding-rnas.csv' 2026-06-26T18:28:38,033 adding 'oncoref/data/source-matrices.csv' 2026-06-26T18:28:38,034 adding 'oncoref/data/tissue-burden-map.csv' 2026-06-26T18:28:38,038 adding 'oncoref-1.8.18.dist-info/licenses/LICENSE' 2026-06-26T18:28:38,039 adding 'oncoref-1.8.18.dist-info/METADATA' 2026-06-26T18:28:38,041 adding 'oncoref-1.8.18.dist-info/WHEEL' 2026-06-26T18:28:38,042 adding 'oncoref-1.8.18.dist-info/entry_points.txt' 2026-06-26T18:28:38,043 adding 'oncoref-1.8.18.dist-info/top_level.txt' 2026-06-26T18:28:38,044 adding 'oncoref-1.8.18.dist-info/RECORD' 2026-06-26T18:28:38,064 removing build/bdist.linux-armv7l/wheel 2026-06-26T18:28:38,187 Building wheel for oncoref (pyproject.toml): finished with status 'done' 2026-06-26T18:28:38,229 Created wheel for oncoref: filename=oncoref-1.8.18-py3-none-any.whl size=1666492 sha256=91f223a369ce125813e0c188cafd3277343fd2ca1caa4d34a5394ba1cb195781 2026-06-26T18:28:38,230 Stored in directory: /tmp/pip-ephem-wheel-cache-3oboxbtg/wheels/3e/9f/30/07dd695a0bf6299e7e633be9c845963650aad96042023cf7fa 2026-06-26T18:28:38,245 Successfully built oncoref 2026-06-26T18:28:38,310 Removed build tracker: '/tmp/pip-build-tracker-50elg035'