2026-06-29T15:13:42,174 Created temporary directory: /tmp/pip-ephem-wheel-cache-jn2ircdr
2026-06-29T15:13:42,176 Created temporary directory: /tmp/pip-build-tracker-9dxezz29
2026-06-29T15:13:42,177 Initialized build tracking at /tmp/pip-build-tracker-9dxezz29
2026-06-29T15:13:42,177 Created build tracker: /tmp/pip-build-tracker-9dxezz29
2026-06-29T15:13:42,177 Entered build tracker: /tmp/pip-build-tracker-9dxezz29
2026-06-29T15:13:42,178 Created temporary directory: /tmp/pip-wheel-um3ziorm
2026-06-29T15:13:42,181 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T15:13:42,184 Created temporary directory: /tmp/pip-ephem-wheel-cache-13l0bos5
2026-06-29T15:13:42,205 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T15:13:42,209 2 location(s) to search for versions of oncoref:
2026-06-29T15:13:42,209 * https://pypi.org/simple/oncoref/
2026-06-29T15:13:42,209 * https://www.piwheels.org/simple/oncoref/
2026-06-29T15:13:42,210 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-06-29T15:13:42,210 Getting page https://pypi.org/simple/oncoref/
2026-06-29T15:13:42,212 Found index url https://pypi.org/simple
2026-06-29T15:13:42,463 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-06-29T15:13:42,473   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,474   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-06-29T15:13:42,475   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,476   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-06-29T15:13:42,477   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,478   Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0
2026-06-29T15:13:42,478   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,479   Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1
2026-06-29T15:13:42,480   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,481   Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2
2026-06-29T15:13:42,482   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,483   Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3
2026-06-29T15:13:42,484   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,484   Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4
2026-06-29T15:13:42,485   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,486   Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5
2026-06-29T15:13:42,486   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,487   Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6
2026-06-29T15:13:42,488   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,489   Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7
2026-06-29T15:13:42,489   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,490   Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8
2026-06-29T15:13:42,491   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,492   Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9
2026-06-29T15:13:42,493   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,494   Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10
2026-06-29T15:13:42,495   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,496   Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11
2026-06-29T15:13:42,497   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,498   Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12
2026-06-29T15:13:42,499   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,500   Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13
2026-06-29T15:13:42,501   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,502   Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14
2026-06-29T15:13:42,503   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ac/42/91b2b04455fb29d40afb47dc7ee2eae30218a24c4d540d95191d31f6f98e/oncoref-1.8.15-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,504   Found link https://files.pythonhosted.org/packages/26/8a/9cb4754077d37b89ed3ee3781cffdb03040d90286aaaedacba8cb238d7c3/oncoref-1.8.15.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.15
2026-06-29T15:13:42,505   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/3f/1af50bb6d208ada32a29b7e3ed29169932b97542b48e765c1d96130b7f3d/oncoref-1.8.16-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,506   Found link https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.16
2026-06-29T15:13:42,506   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/77/d24a0f29e452b83e5d6a1bfb366c72b8407bc7505d94280ca3ba609de07e/oncoref-1.8.17-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,507   Found link https://files.pythonhosted.org/packages/c1/e7/7f753f3a4b044b3f3bc8f75b75ef24df1c9b77d3f0742ee37fc243441830/oncoref-1.8.17.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.17
2026-06-29T15:13:42,508   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/04/55/5f2c1936263bdbe9a95a7c82d673eae8724b3eb1b99d4c1c33eadfc6edf5/oncoref-1.8.18-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,509   Found link https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.18
2026-06-29T15:13:42,510   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/07/35/638b350ebd4fd975c88adb9168c250b482cf549a77381cced479cdf3923f/oncoref-1.8.19-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,510   Found link https://files.pythonhosted.org/packages/39/5a/c1460247c124e495fc20ae3e76a760ee67da5f7263531a1093ae4cdc1983/oncoref-1.8.19.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.19
2026-06-29T15:13:42,511   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/eb/2d/584fe29a9ae1a336ec8dc1dadc08e60e036de296b703c428b69aafb97ee7/oncoref-1.8.20-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,512   Found link https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.20
2026-06-29T15:13:42,512   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/c2/b8/d13577ba1cd9a054203201a66d94d70c8c71156e5afaf85c557c52a8a4c8/oncoref-1.8.21-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,513   Found link https://files.pythonhosted.org/packages/f6/9d/ca143333eade742f336f48670b06ee9849c2c31d9322c5c7bb6979a191a3/oncoref-1.8.21.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.21
2026-06-29T15:13:42,514 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-06-29T15:13:42,515 Getting page https://www.piwheels.org/simple/oncoref/
2026-06-29T15:13:42,516 Found index url https://www.piwheels.org/simple
2026-06-29T15:13:42,924 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
2026-06-29T15:13:42,932   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.19-py3-none-any.whl#sha256=bbbd40de31c902830f47fa96432cc1984e1164d334e95a40633e18ec8caaa41e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,932   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.18-py3-none-any.whl#sha256=91f223a369ce125813e0c188cafd3277343fd2ca1caa4d34a5394ba1cb195781 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,933   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.17-py3-none-any.whl#sha256=5fa3e3356c1574425d42aebe7d135c933ff623b539736554634a762eeaab4a29 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,934   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.16-py3-none-any.whl#sha256=9defcd77c3360e0675a10c0b8de4a1784c19f227a985079b95e21e462de63e97 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,934   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.15-py3-none-any.whl#sha256=4dcd40c2e5c10b8f8be0d8df8489b5f05153d465eb43ddf7f9dc158bbe6b1de3 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,935   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.14-py3-none-any.whl#sha256=ac41cf84ca97c695a15f40326738750e2762e39f366bf99300777803874b26da (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,936   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.13-py3-none-any.whl#sha256=91c3e1fa8448033a913075559a2ee2b76fcbad64e20aeb7696484a9a5619dbef (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,936   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.12-py3-none-any.whl#sha256=2a0e59477b8939fc63d4a78f31b0b793fb2f49ea2aab861d853fa8479ccf9608 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,937   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.11-py3-none-any.whl#sha256=602ac0deb73739e65dfb65105b23357a94a67eb9e1faac0880bff5203ed4a818 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,938   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.10-py3-none-any.whl#sha256=3e789fd35641073e8afc8885dcef12d74a2323c2e0c8dad7b5e369392675e83a (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,939   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.9-py3-none-any.whl#sha256=2415de57054126a885d64b626bbb12657ce55d0791a686b7aba85fd8b784d399 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,939   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.8-py3-none-any.whl#sha256=f1b7351039ce534abc9d36a03b53fd9479b1629b4a6fd8698bc500162f1cd362 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,940   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.7-py3-none-any.whl#sha256=84f80af8afa25d02579e67983b74fd2e515df1ce6d0cb602ecb6808e994f8f63 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,940   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.6-py3-none-any.whl#sha256=460f281fc846e410a5992e3a87193febdfac8bf81f3e5497a5e5d72ae58176bf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,941   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,941   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,942   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,943   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,943   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,944   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,944   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,945   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T15:13:42,946 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-06-29T15:13:42,946 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-06-29T15:13:42,967 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-06-29T15:13:42,985 Collecting oncoref==1.8.20
2026-06-29T15:13:42,987   Created temporary directory: /tmp/pip-unpack-sk25ej6s
2026-06-29T15:13:43,315   Downloading oncoref-1.8.20.tar.gz (1.7 MB)
2026-06-29T15:13:44,019   Added oncoref==1.8.20 from https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz to build tracker '/tmp/pip-build-tracker-9dxezz29'
2026-06-29T15:13:44,026   Created temporary directory: /tmp/pip-build-env-40t_m4nd
2026-06-29T15:13:44,030   Installing build dependencies: started
2026-06-29T15:13:44,031   Running command pip subprocess to install build dependencies
2026-06-29T15:13:45,181   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-06-29T15:13:45,604   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T15:13:45,627   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T15:13:47,894   Collecting setuptools>=61.0
2026-06-29T15:13:47,895     Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-06-29T15:13:47,916     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-06-29T15:13:48,168   Collecting wheel
2026-06-29T15:13:48,168     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-06-29T15:13:48,186     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-06-29T15:13:48,378   Collecting packaging>=24.0
2026-06-29T15:13:48,379     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-06-29T15:13:48,393     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-06-29T15:13:48,593   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-29T15:13:48,616   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-29T15:13:48,701   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-29T15:13:48,747   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-29T15:13:48,775   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-29T15:13:48,869   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-29T15:13:51,639   Installing collected packages: setuptools, packaging, wheel
2026-06-29T15:13:55,235     Creating /tmp/pip-build-env-40t_m4nd/overlay/local/bin
2026-06-29T15:13:55,237     changing mode of /tmp/pip-build-env-40t_m4nd/overlay/local/bin/wheel to 755
2026-06-29T15:13:55,258   Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0
2026-06-29T15:13:55,543   Installing build dependencies: finished with status 'done'
2026-06-29T15:13:55,551   Getting requirements to build wheel: started
2026-06-29T15:13:55,552   Running command Getting requirements to build wheel
2026-06-29T15:13:56,518   running egg_info
2026-06-29T15:13:56,524   writing oncoref.egg-info/PKG-INFO
2026-06-29T15:13:56,530   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-29T15:13:56,531   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-29T15:13:56,534   writing requirements to oncoref.egg-info/requires.txt
2026-06-29T15:13:56,535   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-29T15:13:56,570   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T15:13:56,579   reading manifest template 'MANIFEST.in'
2026-06-29T15:13:56,580   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T15:13:56,581   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T15:13:56,582   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T15:13:56,584   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T15:13:56,585   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T15:13:56,585   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T15:13:56,586   adding license file 'LICENSE'
2026-06-29T15:13:56,594   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T15:13:56,691   Getting requirements to build wheel: finished with status 'done'
2026-06-29T15:13:56,694   Created temporary directory: /tmp/pip-modern-metadata-tpigu4mi
2026-06-29T15:13:56,697   Preparing metadata (pyproject.toml): started
2026-06-29T15:13:56,698   Running command Preparing metadata (pyproject.toml)
2026-06-29T15:13:57,352   running dist_info
2026-06-29T15:13:57,362   creating /tmp/pip-modern-metadata-tpigu4mi/oncoref.egg-info
2026-06-29T15:13:57,363   writing /tmp/pip-modern-metadata-tpigu4mi/oncoref.egg-info/PKG-INFO
2026-06-29T15:13:57,369   writing dependency_links to /tmp/pip-modern-metadata-tpigu4mi/oncoref.egg-info/dependency_links.txt
2026-06-29T15:13:57,371   writing entry points to /tmp/pip-modern-metadata-tpigu4mi/oncoref.egg-info/entry_points.txt
2026-06-29T15:13:57,373   writing requirements to /tmp/pip-modern-metadata-tpigu4mi/oncoref.egg-info/requires.txt
2026-06-29T15:13:57,374   writing top-level names to /tmp/pip-modern-metadata-tpigu4mi/oncoref.egg-info/top_level.txt
2026-06-29T15:13:57,375   writing manifest file '/tmp/pip-modern-metadata-tpigu4mi/oncoref.egg-info/SOURCES.txt'
2026-06-29T15:13:57,409   reading manifest file '/tmp/pip-modern-metadata-tpigu4mi/oncoref.egg-info/SOURCES.txt'
2026-06-29T15:13:57,411   reading manifest template 'MANIFEST.in'
2026-06-29T15:13:57,412   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T15:13:57,413   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T15:13:57,414   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T15:13:57,415   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T15:13:57,416   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T15:13:57,417   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T15:13:57,418   adding license file 'LICENSE'
2026-06-29T15:13:57,424   writing manifest file '/tmp/pip-modern-metadata-tpigu4mi/oncoref.egg-info/SOURCES.txt'
2026-06-29T15:13:57,425   creating '/tmp/pip-modern-metadata-tpigu4mi/oncoref-1.8.20.dist-info'
2026-06-29T15:13:57,549   Preparing metadata (pyproject.toml): finished with status 'done'
2026-06-29T15:13:57,554   Source in /tmp/pip-wheel-um3ziorm/oncoref_a5bc7833778a44b0bc7d1759320b2786 has version 1.8.20, which satisfies requirement oncoref==1.8.20 from https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz
2026-06-29T15:13:57,555   Removed oncoref==1.8.20 from https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz from build tracker '/tmp/pip-build-tracker-9dxezz29'
2026-06-29T15:13:57,560 Created temporary directory: /tmp/pip-unpack-8uwe98s4
2026-06-29T15:13:57,561 Building wheels for collected packages: oncoref
2026-06-29T15:13:57,566   Created temporary directory: /tmp/pip-wheel-3h4yyxbj
2026-06-29T15:13:57,566   Destination directory: /tmp/pip-wheel-3h4yyxbj
2026-06-29T15:13:57,569   Building wheel for oncoref (pyproject.toml): started
2026-06-29T15:13:57,570   Running command Building wheel for oncoref (pyproject.toml)
2026-06-29T15:13:58,204   running bdist_wheel
2026-06-29T15:13:58,222   running build
2026-06-29T15:13:58,222   running build_py
2026-06-29T15:13:58,229   creating build/lib/oncoref
2026-06-29T15:13:58,231   copying oncoref/coverage.py -> build/lib/oncoref
2026-06-29T15:13:58,234   copying oncoref/cta_coverage.py -> build/lib/oncoref
2026-06-29T15:13:58,236   copying oncoref/catalog.py -> build/lib/oncoref
2026-06-29T15:13:58,238   copying oncoref/version.py -> build/lib/oncoref
2026-06-29T15:13:58,240   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-06-29T15:13:58,243   copying oncoref/load_dataset.py -> build/lib/oncoref
2026-06-29T15:13:58,245   copying oncoref/expression_registry.py -> build/lib/oncoref
2026-06-29T15:13:58,247   copying oncoref/cta.py -> build/lib/oncoref
2026-06-29T15:13:58,250   copying oncoref/reference_data.py -> build/lib/oncoref
2026-06-29T15:13:58,252   copying oncoref/ici.py -> build/lib/oncoref
2026-06-29T15:13:58,255   copying oncoref/expression_builders.py -> build/lib/oncoref
2026-06-29T15:13:58,257   copying oncoref/cli.py -> build/lib/oncoref
2026-06-29T15:13:58,260   copying oncoref/hpa.py -> build/lib/oncoref
2026-06-29T15:13:58,263   copying oncoref/normalization.py -> build/lib/oncoref
2026-06-29T15:13:58,266   copying oncoref/__init__.py -> build/lib/oncoref
2026-06-29T15:13:58,268   copying oncoref/cta_peptides.py -> build/lib/oncoref
2026-06-29T15:13:58,270   copying oncoref/expression.py -> build/lib/oncoref
2026-06-29T15:13:58,274   copying oncoref/antigen_coverage.py -> build/lib/oncoref
2026-06-29T15:13:58,276   copying oncoref/incidence.py -> build/lib/oncoref
2026-06-29T15:13:58,279   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-06-29T15:13:58,282   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-06-29T15:13:58,285   copying oncoref/cancer_types.py -> build/lib/oncoref
2026-06-29T15:13:58,288   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-06-29T15:13:58,291   copying oncoref/cta_tissues.py -> build/lib/oncoref
2026-06-29T15:13:58,293   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-06-29T15:13:58,296   copying oncoref/cohorts.py -> build/lib/oncoref
2026-06-29T15:13:58,297   copying oncoref/proteoforms.py -> build/lib/oncoref
2026-06-29T15:13:58,300   copying oncoref/gene_qc.py -> build/lib/oncoref
2026-06-29T15:13:58,302   copying oncoref/genome.py -> build/lib/oncoref
2026-06-29T15:13:58,304   copying oncoref/samples.py -> build/lib/oncoref
2026-06-29T15:13:58,306   copying oncoref/data_manifest.py -> build/lib/oncoref
2026-06-29T15:13:58,308   copying oncoref/response_signatures.py -> build/lib/oncoref
2026-06-29T15:13:58,310   copying oncoref/peptides.py -> build/lib/oncoref
2026-06-29T15:13:58,313   copying oncoref/ici_response.py -> build/lib/oncoref
2026-06-29T15:13:58,315   copying oncoref/apd1.py -> build/lib/oncoref
2026-06-29T15:13:58,317   copying oncoref/cancer_genes.py -> build/lib/oncoref
2026-06-29T15:13:58,319   copying oncoref/gene_families.py -> build/lib/oncoref
2026-06-29T15:13:58,321   copying oncoref/fusions.py -> build/lib/oncoref
2026-06-29T15:13:58,323   copying oncoref/plots.py -> build/lib/oncoref
2026-06-29T15:13:58,326   copying oncoref/tmb.py -> build/lib/oncoref
2026-06-29T15:13:58,328   copying oncoref/cancer_ontology.py -> build/lib/oncoref
2026-06-29T15:13:58,330   copying oncoref/cta_curation_plots.py -> build/lib/oncoref
2026-06-29T15:13:58,344   creating build/lib/oncoref/data
2026-06-29T15:13:58,345   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,348   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,350   copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,352   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,354   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,357   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,359   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,362   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,365   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,368   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,371   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,374   copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,377   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,379   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,381   copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,384   copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,386   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,391   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,394   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,397   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,402   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,405   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,407   copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,411   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,415   copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,418   copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,421   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,428   copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,431   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,433   copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,444   copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,448   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,451   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,454   copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,457   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,460   copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,462   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,465   copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,467   copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,469   copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,473   copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,475   copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,478   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,480   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,483   copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,486   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,490   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,492   copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,495   copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,497   copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,500   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,504   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,507   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-06-29T15:13:58,510   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-06-29T15:13:58,520   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-06-29T15:13:58,527   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-06-29T15:13:58,539   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-06-29T15:13:58,553   installing to build/bdist.linux-armv7l/wheel
2026-06-29T15:13:58,554   running install
2026-06-29T15:13:58,577   running install_lib
2026-06-29T15:13:58,582   creating build/bdist.linux-armv7l/wheel
2026-06-29T15:13:58,585   creating build/bdist.linux-armv7l/wheel/oncoref
2026-06-29T15:13:58,586   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:58,589   copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:58,591   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:58,594   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:58,596   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:58,598   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:58,600   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:58,603   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:58,605   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:58,608   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:58,612   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-06-29T15:13:58,613   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,616   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,618   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,620   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,622   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,624   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,626   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,629   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,632   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,636   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,638   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,641   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,643   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,645   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,658   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,660   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,662   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,664   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,668   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,671   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,673   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,676   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,682   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,684   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,686   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,689   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,693   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,696   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,697   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,703   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,705   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,707   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,714   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,716   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,718   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,720   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,723   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,726   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,728   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,731   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,735   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,943   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,947   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,951   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,955   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,958   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,963   copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,970   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,975   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,978   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,989   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,993   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:58,997   copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:59,003   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:59,011   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:59,017   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:59,023   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T15:13:59,044   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,059   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,077   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,086   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,093   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,103   copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,109   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,119   copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,123   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,126   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,130   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,132   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,137   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,145   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,151   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,157   copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,167   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,184   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,197   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,202   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,204   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,206   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,208   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,211   copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,214   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,217   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,223   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,234   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,247   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,260   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,273   copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,284   copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T15:13:59,295   running install_egg_info
2026-06-29T15:13:59,310   running egg_info
2026-06-29T15:13:59,317   writing oncoref.egg-info/PKG-INFO
2026-06-29T15:13:59,324   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-29T15:13:59,326   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-29T15:13:59,330   writing requirements to oncoref.egg-info/requires.txt
2026-06-29T15:13:59,331   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-29T15:13:59,360   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T15:13:59,369   reading manifest template 'MANIFEST.in'
2026-06-29T15:13:59,371   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T15:13:59,372   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T15:13:59,374   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T15:13:59,375   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T15:13:59,376   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T15:13:59,377   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T15:13:59,378   adding license file 'LICENSE'
2026-06-29T15:13:59,386   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T15:13:59,388   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.20-py3.11.egg-info
2026-06-29T15:13:59,399   running install_scripts
2026-06-29T15:13:59,411   creating build/bdist.linux-armv7l/wheel/oncoref-1.8.20.dist-info/WHEEL
2026-06-29T15:13:59,414   creating '/tmp/pip-wheel-3h4yyxbj/.tmp-45_qzz81/oncoref-1.8.20-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-29T15:13:59,417   adding 'oncoref/__init__.py'
2026-06-29T15:13:59,419   adding 'oncoref/antigen_coverage.py'
2026-06-29T15:13:59,421   adding 'oncoref/apd1.py'
2026-06-29T15:13:59,422   adding 'oncoref/cancer_genes.py'
2026-06-29T15:13:59,424   adding 'oncoref/cancer_ontology.py'
2026-06-29T15:13:59,431   adding 'oncoref/cancer_types.py'
2026-06-29T15:13:59,433   adding 'oncoref/catalog.py'
2026-06-29T15:13:59,436   adding 'oncoref/cli.py'
2026-06-29T15:13:59,438   adding 'oncoref/cohorts.py'
2026-06-29T15:13:59,441   adding 'oncoref/coverage.py'
2026-06-29T15:13:59,444   adding 'oncoref/cta.py'
2026-06-29T15:13:59,446   adding 'oncoref/cta_coverage.py'
2026-06-29T15:13:59,448   adding 'oncoref/cta_curation_plots.py'
2026-06-29T15:13:59,449   adding 'oncoref/cta_peptides.py'
2026-06-29T15:13:59,452   adding 'oncoref/cta_regen.py'
2026-06-29T15:13:59,454   adding 'oncoref/cta_tissues.py'
2026-06-29T15:13:59,456   adding 'oncoref/data_bundle.py'
2026-06-29T15:13:59,458   adding 'oncoref/data_manifest.py'
2026-06-29T15:13:59,469   adding 'oncoref/expression.py'
2026-06-29T15:13:59,471   adding 'oncoref/expression_builders.py'
2026-06-29T15:13:59,475   adding 'oncoref/expression_engine.py'
2026-06-29T15:13:59,476   adding 'oncoref/expression_registry.py'
2026-06-29T15:13:59,478   adding 'oncoref/fusions.py'
2026-06-29T15:13:59,480   adding 'oncoref/gene_families.py'
2026-06-29T15:13:59,482   adding 'oncoref/gene_ids.py'
2026-06-29T15:13:59,484   adding 'oncoref/gene_qc.py'
2026-06-29T15:13:59,486   adding 'oncoref/genome.py'
2026-06-29T15:13:59,487   adding 'oncoref/hpa.py'
2026-06-29T15:13:59,491   adding 'oncoref/ici.py'
2026-06-29T15:13:59,493   adding 'oncoref/ici_response.py'
2026-06-29T15:13:59,495   adding 'oncoref/incidence.py'
2026-06-29T15:13:59,497   adding 'oncoref/load_dataset.py'
2026-06-29T15:13:59,501   adding 'oncoref/normalization.py'
2026-06-29T15:13:59,503   adding 'oncoref/peptides.py'
2026-06-29T15:13:59,510   adding 'oncoref/plots.py'
2026-06-29T15:13:59,513   adding 'oncoref/proteoforms.py'
2026-06-29T15:13:59,515   adding 'oncoref/reference_data.py'
2026-06-29T15:13:59,516   adding 'oncoref/response_signatures.py'
2026-06-29T15:13:59,517   adding 'oncoref/samples.py'
2026-06-29T15:13:59,519   adding 'oncoref/source_matrices.py'
2026-06-29T15:13:59,521   adding 'oncoref/tmb.py'
2026-06-29T15:13:59,522   adding 'oncoref/version.py'
2026-06-29T15:13:59,525   adding 'oncoref/data/cancer-apd1-response.csv'
2026-06-29T15:13:59,527   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-06-29T15:13:59,528   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-06-29T15:13:59,533   adding 'oncoref/data/cancer-driver-genes.csv'
2026-06-29T15:13:59,535   adding 'oncoref/data/cancer-driver-variants.csv'
2026-06-29T15:13:59,538   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-06-29T15:13:59,539   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-06-29T15:13:59,542   adding 'oncoref/data/cancer-fusions.csv'
2026-06-29T15:13:59,560   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-06-29T15:13:59,564   adding 'oncoref/data/cancer-ici-response.csv'
2026-06-29T15:13:59,566   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-06-29T15:13:59,580   adding 'oncoref/data/cancer-key-genes.csv'
2026-06-29T15:13:59,582   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-06-29T15:13:59,584   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-06-29T15:13:59,585   adding 'oncoref/data/cancer-normal-tissue-map.csv'
2026-06-29T15:13:59,614   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-06-29T15:13:59,617   adding 'oncoref/data/cancer-response-signatures.csv'
2026-06-29T15:13:59,618   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-06-29T15:13:59,630   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-06-29T15:13:59,633   adding 'oncoref/data/cancer-tmb.csv'
2026-06-29T15:13:59,635   adding 'oncoref/data/cancer-type-genes.csv'
2026-06-29T15:13:59,639   adding 'oncoref/data/cancer-type-registry.csv'
2026-06-29T15:13:59,641   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-06-29T15:13:59,694   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-06-29T15:13:59,700   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-06-29T15:13:59,703   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-06-29T15:13:59,705   adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv'
2026-06-29T15:13:59,716   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-06-29T15:13:59,718   adding 'oncoref/data/cohort-registry.csv'
2026-06-29T15:13:59,719   adding 'oncoref/data/cta-candidate-references.csv'
2026-06-29T15:13:59,721   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-06-29T15:13:59,722   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-06-29T15:13:59,723   adding 'oncoref/data/disease-state-rules.csv'
2026-06-29T15:13:59,750   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-06-29T15:13:59,756   adding 'oncoref/data/expression_sources.yaml'
2026-06-29T15:13:59,758   adding 'oncoref/data/extra-tx-mappings.csv'
2026-06-29T15:13:59,759   adding 'oncoref/data/family-burden-map.csv'
2026-06-29T15:13:59,761   adding 'oncoref/data/fusion-expression-effects.csv'
2026-06-29T15:13:59,762   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-06-29T15:13:59,763   adding 'oncoref/data/hemoglobin-genes.csv'
2026-06-29T15:13:59,765   adding 'oncoref/data/histone-genes.csv'
2026-06-29T15:13:59,766   adding 'oncoref/data/housekeeping-genes.csv'
2026-06-29T15:13:59,767   adding 'oncoref/data/mitochondrial-genes.csv'
2026-06-29T15:13:59,769   adding 'oncoref/data/narrative-gene-sets.csv'
2026-06-29T15:13:59,809   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-06-29T15:13:59,813   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-06-29T15:13:59,815   adding 'oncoref/data/numt-pseudogenes.csv'
2026-06-29T15:13:59,816   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-06-29T15:13:59,819   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-06-29T15:13:59,820   adding 'oncoref/data/proteoform-groups.csv'
2026-06-29T15:13:59,822   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-06-29T15:13:59,823   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-06-29T15:13:59,830   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-06-29T15:13:59,832   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-06-29T15:13:59,851   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-06-29T15:13:59,854   adding 'oncoref/data/source-matrices.csv'
2026-06-29T15:13:59,855   adding 'oncoref/data/tissue-burden-map.csv'
2026-06-29T15:13:59,858   adding 'oncoref-1.8.20.dist-info/licenses/LICENSE'
2026-06-29T15:13:59,860   adding 'oncoref-1.8.20.dist-info/METADATA'
2026-06-29T15:13:59,862   adding 'oncoref-1.8.20.dist-info/WHEEL'
2026-06-29T15:13:59,862   adding 'oncoref-1.8.20.dist-info/entry_points.txt'
2026-06-29T15:13:59,863   adding 'oncoref-1.8.20.dist-info/top_level.txt'
2026-06-29T15:13:59,865   adding 'oncoref-1.8.20.dist-info/RECORD'
2026-06-29T15:13:59,885   removing build/bdist.linux-armv7l/wheel
2026-06-29T15:14:00,003   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-06-29T15:14:00,042   Created wheel for oncoref: filename=oncoref-1.8.20-py3-none-any.whl size=1670426 sha256=02858d3770dc0077ec2663efc1ab8ae19e982b234caa93e7035f95670b0d174e
2026-06-29T15:14:00,044   Stored in directory: /tmp/pip-ephem-wheel-cache-13l0bos5/wheels/b8/eb/e3/d96e029a5aa6732139ccec392f084509623004afd3ab004217
2026-06-29T15:14:00,059 Successfully built oncoref
2026-06-29T15:14:00,112 Removed build tracker: '/tmp/pip-build-tracker-9dxezz29'