2026-06-29T16:45:53,912 Created temporary directory: /tmp/pip-ephem-wheel-cache-zyjsc0_x
2026-06-29T16:45:53,914 Created temporary directory: /tmp/pip-build-tracker-gm7r3vm9
2026-06-29T16:45:53,914 Initialized build tracking at /tmp/pip-build-tracker-gm7r3vm9
2026-06-29T16:45:53,915 Created build tracker: /tmp/pip-build-tracker-gm7r3vm9
2026-06-29T16:45:53,915 Entered build tracker: /tmp/pip-build-tracker-gm7r3vm9
2026-06-29T16:45:53,916 Created temporary directory: /tmp/pip-wheel-udnicd2a
2026-06-29T16:45:53,919 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T16:45:53,921 Created temporary directory: /tmp/pip-ephem-wheel-cache-w0igh9c2
2026-06-29T16:45:53,943 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T16:45:53,946 2 location(s) to search for versions of oncoref:
2026-06-29T16:45:53,946 * https://pypi.org/simple/oncoref/
2026-06-29T16:45:53,946 * https://www.piwheels.org/simple/oncoref/
2026-06-29T16:45:53,947 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-06-29T16:45:53,948 Getting page https://pypi.org/simple/oncoref/
2026-06-29T16:45:53,950 Found index url https://pypi.org/simple
2026-06-29T16:45:54,099 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-06-29T16:45:54,109   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,110   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-06-29T16:45:54,111   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,112   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-06-29T16:45:54,113   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,114   Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0
2026-06-29T16:45:54,114   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,116   Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1
2026-06-29T16:45:54,116   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,117   Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2
2026-06-29T16:45:54,118   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,119   Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3
2026-06-29T16:45:54,120   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,121   Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4
2026-06-29T16:45:54,121   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,122   Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5
2026-06-29T16:45:54,123   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,124   Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6
2026-06-29T16:45:54,124   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,125   Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7
2026-06-29T16:45:54,126   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,127   Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8
2026-06-29T16:45:54,128   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,128   Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9
2026-06-29T16:45:54,129   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,130   Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10
2026-06-29T16:45:54,131   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,132   Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11
2026-06-29T16:45:54,132   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,133   Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12
2026-06-29T16:45:54,134   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,135   Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13
2026-06-29T16:45:54,135   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,136   Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14
2026-06-29T16:45:54,137   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ac/42/91b2b04455fb29d40afb47dc7ee2eae30218a24c4d540d95191d31f6f98e/oncoref-1.8.15-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,138   Found link https://files.pythonhosted.org/packages/26/8a/9cb4754077d37b89ed3ee3781cffdb03040d90286aaaedacba8cb238d7c3/oncoref-1.8.15.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.15
2026-06-29T16:45:54,139   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/3f/1af50bb6d208ada32a29b7e3ed29169932b97542b48e765c1d96130b7f3d/oncoref-1.8.16-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,140   Found link https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.16
2026-06-29T16:45:54,140   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/77/d24a0f29e452b83e5d6a1bfb366c72b8407bc7505d94280ca3ba609de07e/oncoref-1.8.17-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,141   Found link https://files.pythonhosted.org/packages/c1/e7/7f753f3a4b044b3f3bc8f75b75ef24df1c9b77d3f0742ee37fc243441830/oncoref-1.8.17.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.17
2026-06-29T16:45:54,142   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/04/55/5f2c1936263bdbe9a95a7c82d673eae8724b3eb1b99d4c1c33eadfc6edf5/oncoref-1.8.18-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,143   Found link https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.18
2026-06-29T16:45:54,144   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/07/35/638b350ebd4fd975c88adb9168c250b482cf549a77381cced479cdf3923f/oncoref-1.8.19-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,144   Found link https://files.pythonhosted.org/packages/39/5a/c1460247c124e495fc20ae3e76a760ee67da5f7263531a1093ae4cdc1983/oncoref-1.8.19.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.19
2026-06-29T16:45:54,145   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/eb/2d/584fe29a9ae1a336ec8dc1dadc08e60e036de296b703c428b69aafb97ee7/oncoref-1.8.20-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,146   Found link https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.20
2026-06-29T16:45:54,146   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/c2/b8/d13577ba1cd9a054203201a66d94d70c8c71156e5afaf85c557c52a8a4c8/oncoref-1.8.21-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,147   Found link https://files.pythonhosted.org/packages/f6/9d/ca143333eade742f336f48670b06ee9849c2c31d9322c5c7bb6979a191a3/oncoref-1.8.21.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.21
2026-06-29T16:45:54,148   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/59/bd/c385a7916a14b417f607eecb73034e821165e8f650435947ecf8845c5161/oncoref-1.8.22-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,149   Found link https://files.pythonhosted.org/packages/a7/cc/f9b0c987a30c7928b99e165f2bd778a677eb1433eb0802911d6678139aeb/oncoref-1.8.22.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.22
2026-06-29T16:45:54,149   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/e7/f2/ae5d03f1bf678a753916310b281effcbc4cf19a4e0e6995437966ad6ac91/oncoref-1.8.23-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,150   Found link https://files.pythonhosted.org/packages/be/8c/f6a66a8ae2ba39778734de5548a77246995f30c636670ff2ca38094ff59e/oncoref-1.8.23.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.23
2026-06-29T16:45:54,151 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-06-29T16:45:54,152 Getting page https://www.piwheels.org/simple/oncoref/
2026-06-29T16:45:54,153 Found index url https://www.piwheels.org/simple
2026-06-29T16:45:54,335 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
2026-06-29T16:45:54,343   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.21-py3-none-any.whl#sha256=ac7131b0f8f46c73d142fc08042a64e251ad3df564bfc62308d462affc18f008 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,343   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.20-py3-none-any.whl#sha256=02858d3770dc0077ec2663efc1ab8ae19e982b234caa93e7035f95670b0d174e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,344   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.19-py3-none-any.whl#sha256=bbbd40de31c902830f47fa96432cc1984e1164d334e95a40633e18ec8caaa41e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,345   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.18-py3-none-any.whl#sha256=91f223a369ce125813e0c188cafd3277343fd2ca1caa4d34a5394ba1cb195781 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,346   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.17-py3-none-any.whl#sha256=5fa3e3356c1574425d42aebe7d135c933ff623b539736554634a762eeaab4a29 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,346   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.16-py3-none-any.whl#sha256=9defcd77c3360e0675a10c0b8de4a1784c19f227a985079b95e21e462de63e97 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,347   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.15-py3-none-any.whl#sha256=4dcd40c2e5c10b8f8be0d8df8489b5f05153d465eb43ddf7f9dc158bbe6b1de3 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,347   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.14-py3-none-any.whl#sha256=ac41cf84ca97c695a15f40326738750e2762e39f366bf99300777803874b26da (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,348   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.13-py3-none-any.whl#sha256=91c3e1fa8448033a913075559a2ee2b76fcbad64e20aeb7696484a9a5619dbef (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,348   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.12-py3-none-any.whl#sha256=2a0e59477b8939fc63d4a78f31b0b793fb2f49ea2aab861d853fa8479ccf9608 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,349   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.11-py3-none-any.whl#sha256=602ac0deb73739e65dfb65105b23357a94a67eb9e1faac0880bff5203ed4a818 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,349   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.10-py3-none-any.whl#sha256=3e789fd35641073e8afc8885dcef12d74a2323c2e0c8dad7b5e369392675e83a (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,350   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.9-py3-none-any.whl#sha256=2415de57054126a885d64b626bbb12657ce55d0791a686b7aba85fd8b784d399 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,351   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.8-py3-none-any.whl#sha256=f1b7351039ce534abc9d36a03b53fd9479b1629b4a6fd8698bc500162f1cd362 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,351   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.7-py3-none-any.whl#sha256=84f80af8afa25d02579e67983b74fd2e515df1ce6d0cb602ecb6808e994f8f63 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,352   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.6-py3-none-any.whl#sha256=460f281fc846e410a5992e3a87193febdfac8bf81f3e5497a5e5d72ae58176bf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,352   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,353   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,354   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,354   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,355   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,355   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,356   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,356   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T16:45:54,357 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-06-29T16:45:54,357 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-06-29T16:45:54,381 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-06-29T16:45:54,401 Collecting oncoref==1.8.22
2026-06-29T16:45:54,403   Created temporary directory: /tmp/pip-unpack-nigo_eu0
2026-06-29T16:45:54,710   Downloading oncoref-1.8.22.tar.gz (1.7 MB)
2026-06-29T16:45:55,406   Added oncoref==1.8.22 from https://files.pythonhosted.org/packages/a7/cc/f9b0c987a30c7928b99e165f2bd778a677eb1433eb0802911d6678139aeb/oncoref-1.8.22.tar.gz to build tracker '/tmp/pip-build-tracker-gm7r3vm9'
2026-06-29T16:45:55,413   Created temporary directory: /tmp/pip-build-env-94_gttm5
2026-06-29T16:45:55,418   Installing build dependencies: started
2026-06-29T16:45:55,419   Running command pip subprocess to install build dependencies
2026-06-29T16:45:56,579   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-06-29T16:45:56,993   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T16:45:57,016   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T16:45:58,802   Collecting setuptools>=61.0
2026-06-29T16:45:58,803     Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-06-29T16:45:58,817     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-06-29T16:45:59,049   Collecting wheel
2026-06-29T16:45:59,050     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-06-29T16:45:59,063     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-06-29T16:45:59,247   Collecting packaging>=24.0
2026-06-29T16:45:59,247     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-06-29T16:45:59,259     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-06-29T16:45:59,449   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-29T16:45:59,467   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-29T16:45:59,552   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-29T16:45:59,586   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-29T16:45:59,609   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-29T16:45:59,692   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-29T16:46:02,452   Installing collected packages: setuptools, packaging, wheel
2026-06-29T16:46:05,922     Creating /tmp/pip-build-env-94_gttm5/overlay/local/bin
2026-06-29T16:46:05,924     changing mode of /tmp/pip-build-env-94_gttm5/overlay/local/bin/wheel to 755
2026-06-29T16:46:05,946   Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0
2026-06-29T16:46:06,230   Installing build dependencies: finished with status 'done'
2026-06-29T16:46:06,237   Getting requirements to build wheel: started
2026-06-29T16:46:06,238   Running command Getting requirements to build wheel
2026-06-29T16:46:06,945   running egg_info
2026-06-29T16:46:06,950   writing oncoref.egg-info/PKG-INFO
2026-06-29T16:46:06,956   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-29T16:46:06,958   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-29T16:46:06,961   writing requirements to oncoref.egg-info/requires.txt
2026-06-29T16:46:06,962   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-29T16:46:06,997   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T16:46:07,006   reading manifest template 'MANIFEST.in'
2026-06-29T16:46:07,008   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T16:46:07,009   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T16:46:07,010   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T16:46:07,011   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T16:46:07,012   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T16:46:07,013   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T16:46:07,014   adding license file 'LICENSE'
2026-06-29T16:46:07,022   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T16:46:07,119   Getting requirements to build wheel: finished with status 'done'
2026-06-29T16:46:07,123   Created temporary directory: /tmp/pip-modern-metadata-22hqsif5
2026-06-29T16:46:07,125   Preparing metadata (pyproject.toml): started
2026-06-29T16:46:07,126   Running command Preparing metadata (pyproject.toml)
2026-06-29T16:46:07,770   running dist_info
2026-06-29T16:46:07,781   creating /tmp/pip-modern-metadata-22hqsif5/oncoref.egg-info
2026-06-29T16:46:07,782   writing /tmp/pip-modern-metadata-22hqsif5/oncoref.egg-info/PKG-INFO
2026-06-29T16:46:07,789   writing dependency_links to /tmp/pip-modern-metadata-22hqsif5/oncoref.egg-info/dependency_links.txt
2026-06-29T16:46:07,791   writing entry points to /tmp/pip-modern-metadata-22hqsif5/oncoref.egg-info/entry_points.txt
2026-06-29T16:46:07,794   writing requirements to /tmp/pip-modern-metadata-22hqsif5/oncoref.egg-info/requires.txt
2026-06-29T16:46:07,794   writing top-level names to /tmp/pip-modern-metadata-22hqsif5/oncoref.egg-info/top_level.txt
2026-06-29T16:46:07,796   writing manifest file '/tmp/pip-modern-metadata-22hqsif5/oncoref.egg-info/SOURCES.txt'
2026-06-29T16:46:07,831   reading manifest file '/tmp/pip-modern-metadata-22hqsif5/oncoref.egg-info/SOURCES.txt'
2026-06-29T16:46:07,833   reading manifest template 'MANIFEST.in'
2026-06-29T16:46:07,834   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T16:46:07,836   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T16:46:07,837   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T16:46:07,838   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T16:46:07,839   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T16:46:07,840   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T16:46:07,841   adding license file 'LICENSE'
2026-06-29T16:46:07,847   writing manifest file '/tmp/pip-modern-metadata-22hqsif5/oncoref.egg-info/SOURCES.txt'
2026-06-29T16:46:07,848   creating '/tmp/pip-modern-metadata-22hqsif5/oncoref-1.8.22.dist-info'
2026-06-29T16:46:07,979   Preparing metadata (pyproject.toml): finished with status 'done'
2026-06-29T16:46:07,984   Source in /tmp/pip-wheel-udnicd2a/oncoref_74c276e4ee964416a4ba359633454226 has version 1.8.22, which satisfies requirement oncoref==1.8.22 from https://files.pythonhosted.org/packages/a7/cc/f9b0c987a30c7928b99e165f2bd778a677eb1433eb0802911d6678139aeb/oncoref-1.8.22.tar.gz
2026-06-29T16:46:07,985   Removed oncoref==1.8.22 from https://files.pythonhosted.org/packages/a7/cc/f9b0c987a30c7928b99e165f2bd778a677eb1433eb0802911d6678139aeb/oncoref-1.8.22.tar.gz from build tracker '/tmp/pip-build-tracker-gm7r3vm9'
2026-06-29T16:46:07,991 Created temporary directory: /tmp/pip-unpack-d18406i8
2026-06-29T16:46:07,992 Building wheels for collected packages: oncoref
2026-06-29T16:46:07,997   Created temporary directory: /tmp/pip-wheel-lf7oqg1y
2026-06-29T16:46:07,997   Destination directory: /tmp/pip-wheel-lf7oqg1y
2026-06-29T16:46:07,999   Building wheel for oncoref (pyproject.toml): started
2026-06-29T16:46:08,001   Running command Building wheel for oncoref (pyproject.toml)
2026-06-29T16:46:08,619   running bdist_wheel
2026-06-29T16:46:08,636   running build
2026-06-29T16:46:08,637   running build_py
2026-06-29T16:46:08,643   creating build/lib/oncoref
2026-06-29T16:46:08,646   copying oncoref/ici_response.py -> build/lib/oncoref
2026-06-29T16:46:08,649   copying oncoref/coverage.py -> build/lib/oncoref
2026-06-29T16:46:08,651   copying oncoref/normalization.py -> build/lib/oncoref
2026-06-29T16:46:08,655   copying oncoref/gene_families.py -> build/lib/oncoref
2026-06-29T16:46:08,657   copying oncoref/tmb.py -> build/lib/oncoref
2026-06-29T16:46:08,660   copying oncoref/reference_data.py -> build/lib/oncoref
2026-06-29T16:46:08,662   copying oncoref/apd1.py -> build/lib/oncoref
2026-06-29T16:46:08,664   copying oncoref/cta.py -> build/lib/oncoref
2026-06-29T16:46:08,667   copying oncoref/__init__.py -> build/lib/oncoref
2026-06-29T16:46:08,670   copying oncoref/cta_curation_plots.py -> build/lib/oncoref
2026-06-29T16:46:08,672   copying oncoref/cta_peptides.py -> build/lib/oncoref
2026-06-29T16:46:08,674   copying oncoref/load_dataset.py -> build/lib/oncoref
2026-06-29T16:46:08,677   copying oncoref/fusions.py -> build/lib/oncoref
2026-06-29T16:46:08,679   copying oncoref/antigen_coverage.py -> build/lib/oncoref
2026-06-29T16:46:08,681   copying oncoref/samples.py -> build/lib/oncoref
2026-06-29T16:46:08,683   copying oncoref/cli.py -> build/lib/oncoref
2026-06-29T16:46:08,686   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-06-29T16:46:08,688   copying oncoref/proteoforms.py -> build/lib/oncoref
2026-06-29T16:46:08,691   copying oncoref/ici.py -> build/lib/oncoref
2026-06-29T16:46:08,694   copying oncoref/cta_tissues.py -> build/lib/oncoref
2026-06-29T16:46:08,696   copying oncoref/cancer_ontology.py -> build/lib/oncoref
2026-06-29T16:46:08,698   copying oncoref/data_manifest.py -> build/lib/oncoref
2026-06-29T16:46:08,700   copying oncoref/catalog.py -> build/lib/oncoref
2026-06-29T16:46:08,703   copying oncoref/version.py -> build/lib/oncoref
2026-06-29T16:46:08,705   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-06-29T16:46:08,707   copying oncoref/response_signatures.py -> build/lib/oncoref
2026-06-29T16:46:08,709   copying oncoref/hpa.py -> build/lib/oncoref
2026-06-29T16:46:08,712   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-06-29T16:46:08,714   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-06-29T16:46:08,717   copying oncoref/gene_qc.py -> build/lib/oncoref
2026-06-29T16:46:08,719   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-06-29T16:46:08,721   copying oncoref/expression.py -> build/lib/oncoref
2026-06-29T16:46:08,726   copying oncoref/cancer_types.py -> build/lib/oncoref
2026-06-29T16:46:08,729   copying oncoref/cancer_genes.py -> build/lib/oncoref
2026-06-29T16:46:08,731   copying oncoref/expression_registry.py -> build/lib/oncoref
2026-06-29T16:46:08,734   copying oncoref/plots.py -> build/lib/oncoref
2026-06-29T16:46:08,737   copying oncoref/peptides.py -> build/lib/oncoref
2026-06-29T16:46:08,739   copying oncoref/incidence.py -> build/lib/oncoref
2026-06-29T16:46:08,742   copying oncoref/cta_coverage.py -> build/lib/oncoref
2026-06-29T16:46:08,744   copying oncoref/cohorts.py -> build/lib/oncoref
2026-06-29T16:46:08,745   copying oncoref/expression_builders.py -> build/lib/oncoref
2026-06-29T16:46:08,748   copying oncoref/genome.py -> build/lib/oncoref
2026-06-29T16:46:08,763   creating build/lib/oncoref/data
2026-06-29T16:46:08,764   copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,766   copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,769   copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,771   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,774   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,777   copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,780   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,782   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,785   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,788   copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,791   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,794   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,800   copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,803   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,805   copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,808   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,811   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,814   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,817   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,820   copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,822   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,825   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,828   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,831   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,833   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,839   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,842   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,844   copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,846   copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,850   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,855   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,858   copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,861   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,866   copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,869   copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,872   copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,874   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,877   copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,880   copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,883   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,885   copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,896   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,898   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,901   copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,903   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,906   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,909   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,912   copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,915   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,917   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,920   copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,923   copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,925   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
2026-06-29T16:46:08,930   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-06-29T16:46:08,939   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-06-29T16:46:08,952   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-06-29T16:46:08,964   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-06-29T16:46:08,978   installing to build/bdist.linux-armv7l/wheel
2026-06-29T16:46:08,979   running install
2026-06-29T16:46:09,002   running install_lib
2026-06-29T16:46:09,007   creating build/bdist.linux-armv7l/wheel
2026-06-29T16:46:09,010   creating build/bdist.linux-armv7l/wheel/oncoref
2026-06-29T16:46:09,011   copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,014   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,016   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,019   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,022   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,024   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,027   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,029   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,032   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,034   copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,037   copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,039   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,041   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,043   copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,045   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,048   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,050   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,053   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,056   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,059   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,061   copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,063   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,066   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,069   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,071   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,075   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,077   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,080   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,082   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,085   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,087   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,091   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-06-29T16:46:09,092   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,095   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,097   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,099   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,101   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,104   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,106   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,107   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,110   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,112   copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,114   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,117   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,121   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,123   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,125   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,128   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,130   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,132   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,134   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,137   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,139   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,152   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,155   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,157   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,159   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,161   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,164   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,172   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,174   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,176   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,178   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,181   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,187   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,189   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,191   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,197   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,200   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,202   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,204   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,207   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,210   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,212   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,214   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,222   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,224   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,226   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,228   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,231   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,233   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,237   copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,239   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,249   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,251   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,254   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,256   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,258   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,262   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T16:46:09,270   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,275   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,279   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,281   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,284   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,288   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,291   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,293   copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,296   copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,298   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,301   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T16:46:09,304   running install_egg_info
2026-06-29T16:46:09,313   running egg_info
2026-06-29T16:46:09,319   writing oncoref.egg-info/PKG-INFO
2026-06-29T16:46:09,325   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-29T16:46:09,327   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-29T16:46:09,330   writing requirements to oncoref.egg-info/requires.txt
2026-06-29T16:46:09,331   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-29T16:46:09,351   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T16:46:09,361   reading manifest template 'MANIFEST.in'
2026-06-29T16:46:09,363   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T16:46:09,364   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T16:46:09,366   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T16:46:09,367   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T16:46:09,369   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T16:46:09,370   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T16:46:09,371   adding license file 'LICENSE'
2026-06-29T16:46:09,380   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T16:46:09,382   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.22-py3.11.egg-info
2026-06-29T16:46:09,396   running install_scripts
2026-06-29T16:46:09,409   creating build/bdist.linux-armv7l/wheel/oncoref-1.8.22.dist-info/WHEEL
2026-06-29T16:46:09,413   creating '/tmp/pip-wheel-lf7oqg1y/.tmp-6gmk7lyt/oncoref-1.8.22-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-29T16:46:09,417   adding 'oncoref/__init__.py'
2026-06-29T16:46:09,419   adding 'oncoref/antigen_coverage.py'
2026-06-29T16:46:09,421   adding 'oncoref/apd1.py'
2026-06-29T16:46:09,423   adding 'oncoref/cancer_genes.py'
2026-06-29T16:46:09,425   adding 'oncoref/cancer_ontology.py'
2026-06-29T16:46:09,432   adding 'oncoref/cancer_types.py'
2026-06-29T16:46:09,435   adding 'oncoref/catalog.py'
2026-06-29T16:46:09,439   adding 'oncoref/cli.py'
2026-06-29T16:46:09,441   adding 'oncoref/cohorts.py'
2026-06-29T16:46:09,444   adding 'oncoref/coverage.py'
2026-06-29T16:46:09,448   adding 'oncoref/cta.py'
2026-06-29T16:46:09,450   adding 'oncoref/cta_coverage.py'
2026-06-29T16:46:09,452   adding 'oncoref/cta_curation_plots.py'
2026-06-29T16:46:09,454   adding 'oncoref/cta_peptides.py'
2026-06-29T16:46:09,457   adding 'oncoref/cta_regen.py'
2026-06-29T16:46:09,459   adding 'oncoref/cta_tissues.py'
2026-06-29T16:46:09,462   adding 'oncoref/data_bundle.py'
2026-06-29T16:46:09,465   adding 'oncoref/data_manifest.py'
2026-06-29T16:46:09,476   adding 'oncoref/expression.py'
2026-06-29T16:46:09,479   adding 'oncoref/expression_builders.py'
2026-06-29T16:46:09,483   adding 'oncoref/expression_engine.py'
2026-06-29T16:46:09,485   adding 'oncoref/expression_registry.py'
2026-06-29T16:46:09,487   adding 'oncoref/fusions.py'
2026-06-29T16:46:09,490   adding 'oncoref/gene_families.py'
2026-06-29T16:46:09,492   adding 'oncoref/gene_ids.py'
2026-06-29T16:46:09,494   adding 'oncoref/gene_qc.py'
2026-06-29T16:46:09,497   adding 'oncoref/genome.py'
2026-06-29T16:46:09,499   adding 'oncoref/hpa.py'
2026-06-29T16:46:09,504   adding 'oncoref/ici.py'
2026-06-29T16:46:09,506   adding 'oncoref/ici_response.py'
2026-06-29T16:46:09,508   adding 'oncoref/incidence.py'
2026-06-29T16:46:09,511   adding 'oncoref/load_dataset.py'
2026-06-29T16:46:09,515   adding 'oncoref/normalization.py'
2026-06-29T16:46:09,518   adding 'oncoref/peptides.py'
2026-06-29T16:46:09,525   adding 'oncoref/plots.py'
2026-06-29T16:46:09,529   adding 'oncoref/proteoforms.py'
2026-06-29T16:46:09,531   adding 'oncoref/reference_data.py'
2026-06-29T16:46:09,533   adding 'oncoref/response_signatures.py'
2026-06-29T16:46:09,535   adding 'oncoref/samples.py'
2026-06-29T16:46:09,537   adding 'oncoref/source_matrices.py'
2026-06-29T16:46:09,539   adding 'oncoref/tmb.py'
2026-06-29T16:46:09,541   adding 'oncoref/version.py'
2026-06-29T16:46:09,545   adding 'oncoref/data/cancer-apd1-response.csv'
2026-06-29T16:46:09,547   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-06-29T16:46:09,549   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-06-29T16:46:09,554   adding 'oncoref/data/cancer-driver-genes.csv'
2026-06-29T16:46:09,557   adding 'oncoref/data/cancer-driver-variants.csv'
2026-06-29T16:46:09,560   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-06-29T16:46:09,562   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-06-29T16:46:09,565   adding 'oncoref/data/cancer-fusions.csv'
2026-06-29T16:46:09,583   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-06-29T16:46:09,588   adding 'oncoref/data/cancer-ici-response.csv'
2026-06-29T16:46:09,590   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-06-29T16:46:09,605   adding 'oncoref/data/cancer-key-genes.csv'
2026-06-29T16:46:09,607   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-06-29T16:46:09,609   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-06-29T16:46:09,611   adding 'oncoref/data/cancer-normal-tissue-map.csv'
2026-06-29T16:46:09,640   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-06-29T16:46:09,644   adding 'oncoref/data/cancer-response-signatures.csv'
2026-06-29T16:46:09,646   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-06-29T16:46:09,658   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-06-29T16:46:09,660   adding 'oncoref/data/cancer-tmb.csv'
2026-06-29T16:46:09,663   adding 'oncoref/data/cancer-type-genes.csv'
2026-06-29T16:46:09,667   adding 'oncoref/data/cancer-type-registry.csv'
2026-06-29T16:46:09,669   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-06-29T16:46:09,721   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-06-29T16:46:09,726   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-06-29T16:46:09,730   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-06-29T16:46:09,732   adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv'
2026-06-29T16:46:09,742   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-06-29T16:46:09,744   adding 'oncoref/data/cohort-registry.csv'
2026-06-29T16:46:09,746   adding 'oncoref/data/cta-candidate-references.csv'
2026-06-29T16:46:09,747   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-06-29T16:46:09,748   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-06-29T16:46:09,750   adding 'oncoref/data/disease-state-rules.csv'
2026-06-29T16:46:09,777   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-06-29T16:46:09,783   adding 'oncoref/data/expression_sources.yaml'
2026-06-29T16:46:09,785   adding 'oncoref/data/extra-tx-mappings.csv'
2026-06-29T16:46:09,786   adding 'oncoref/data/family-burden-map.csv'
2026-06-29T16:46:09,787   adding 'oncoref/data/fusion-expression-effects.csv'
2026-06-29T16:46:09,789   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-06-29T16:46:09,790   adding 'oncoref/data/hemoglobin-genes.csv'
2026-06-29T16:46:09,792   adding 'oncoref/data/histone-genes.csv'
2026-06-29T16:46:09,793   adding 'oncoref/data/housekeeping-genes.csv'
2026-06-29T16:46:09,794   adding 'oncoref/data/mitochondrial-genes.csv'
2026-06-29T16:46:09,796   adding 'oncoref/data/narrative-gene-sets.csv'
2026-06-29T16:46:09,836   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-06-29T16:46:09,840   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-06-29T16:46:09,842   adding 'oncoref/data/numt-pseudogenes.csv'
2026-06-29T16:46:09,843   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-06-29T16:46:09,846   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-06-29T16:46:09,848   adding 'oncoref/data/proteoform-groups.csv'
2026-06-29T16:46:09,850   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-06-29T16:46:09,851   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-06-29T16:46:09,857   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-06-29T16:46:09,860   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-06-29T16:46:09,879   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-06-29T16:46:09,881   adding 'oncoref/data/source-matrices.csv'
2026-06-29T16:46:09,883   adding 'oncoref/data/tissue-burden-map.csv'
2026-06-29T16:46:09,886   adding 'oncoref-1.8.22.dist-info/licenses/LICENSE'
2026-06-29T16:46:09,888   adding 'oncoref-1.8.22.dist-info/METADATA'
2026-06-29T16:46:09,889   adding 'oncoref-1.8.22.dist-info/WHEEL'
2026-06-29T16:46:09,890   adding 'oncoref-1.8.22.dist-info/entry_points.txt'
2026-06-29T16:46:09,891   adding 'oncoref-1.8.22.dist-info/top_level.txt'
2026-06-29T16:46:09,893   adding 'oncoref-1.8.22.dist-info/RECORD'
2026-06-29T16:46:09,914   removing build/bdist.linux-armv7l/wheel
2026-06-29T16:46:10,036   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-06-29T16:46:10,092   Created wheel for oncoref: filename=oncoref-1.8.22-py3-none-any.whl size=1672109 sha256=f9f6af90f23f91ed83e606231a0b8288143792f632998acf8e42adb9b41fa572
2026-06-29T16:46:10,093   Stored in directory: /tmp/pip-ephem-wheel-cache-w0igh9c2/wheels/69/5a/e0/bf813b424371e22afb1324aca6805d181ff675ffd37b55c67d
2026-06-29T16:46:10,109 Successfully built oncoref
2026-06-29T16:46:10,164 Removed build tracker: '/tmp/pip-build-tracker-gm7r3vm9'